Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0334140 | XP_013465818.1 | 98.119 | 319 | 4 | 1 | 1 | 319 | 1 | 317 | 0.0 | 646 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0334140 | sp|Q9LE16|BRX11_ARATH | 79.062 | 320 | 60 | 3 | 1 | 319 | 1 | 314 | 0.0 | 523 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0191450 | Msa0334140 | 0.806498 | 7.988459e-50 | -8.615850e-47 |
| Msa0216640 | Msa0334140 | 0.843494 | 1.354103e-58 | -8.615850e-47 |
| Msa0295880 | Msa0334140 | 0.851767 | 7.161660e-61 | -8.615850e-47 |
| Msa0334140 | Msa0656410 | 0.804520 | 2.076838e-49 | -8.615850e-47 |
| Msa0334140 | Msa0822580 | 0.810493 | 1.121396e-50 | -8.615850e-47 |
| Msa0334140 | Msa1218170 | 0.836551 | 8.755540e-57 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0334140 | MtrunA17_Chr1g0149671 | 98.119 | 319 | 4 | 1 | 1 | 319 | 1 | 317 | 0.0 | 646 |
| Msa0334140 | MtrunA17_Chr7g0242911 | 97.179 | 319 | 5 | 1 | 1 | 319 | 1 | 315 | 0.0 | 638 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0334140 | AT3G15460.1 | 79.062 | 320 | 60 | 3 | 1 | 319 | 1 | 314 | 0.0 | 523 |
| Msa0334140 | AT1G52930.1 | 78.125 | 320 | 67 | 2 | 1 | 319 | 1 | 318 | 0.0 | 504 |
Find 112 sgRNAs with CRISPR-Local
Find 311 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTCTCTTCCCCATGTTATT+TGG | 0.215344 | 2_4:+52322101 | None:intergenic |
| GCTCTAGGCGTATTGTTTAT+AGG | 0.224171 | 2_4:-52321902 | Msa0334140:intron |
| GCTATATTTATATTCTTATA+TGG | 0.238642 | 2_4:-52318164 | Msa0334140:three_prime_UTR |
| TCACCATTCGTGTCGAATAT+AGG | 0.268094 | 2_4:+52318432 | None:intergenic |
| CAATTGTTGATGACCATATA+TGG | 0.275985 | 2_4:-52319852 | Msa0334140:CDS |
| AAAATATTCGGTGGCAGTTT+TGG | 0.276214 | 2_4:-52318790 | Msa0334140:CDS |
| ACTGCACTCTCTCTGGTGTT+GGG | 0.287267 | 2_4:-52323529 | Msa0334140:five_prime_UTR |
| CGCTTTGCAGAAGAAGAAAA+AGG | 0.301141 | 2_4:-52318609 | Msa0334140:CDS |
| ATGGAGGAATTGAAGCTTAC+TGG | 0.304877 | 2_4:-52320512 | Msa0334140:CDS |
| TGGTTTGGCGACACATATAA+TGG | 0.307289 | 2_4:+52318745 | None:intergenic |
| ACATGTTCAATTGGAGATAT+AGG | 0.307396 | 2_4:-52318338 | Msa0334140:three_prime_UTR |
| GTTGGCAGTCCATTCTTTGT+AGG | 0.311442 | 2_4:-52318403 | Msa0334140:three_prime_UTR |
| GAGACCAGTGAGGACCCTTT+TGG | 0.316595 | 2_4:-52322021 | Msa0334140:CDS |
| CACCATTCGTGTCGAATATA+GGG | 0.324795 | 2_4:+52318433 | None:intergenic |
| GGTAATTTCGGAACCATATA+TGG | 0.326418 | 2_4:+52319839 | None:intergenic |
| TGCATACTGGAAACTGTTAA+AGG | 0.335855 | 2_4:-52320432 | Msa0334140:CDS |
| AGACACAAACCTGGTAATTT+CGG | 0.336053 | 2_4:+52319827 | None:intergenic |
| TGGGTTTATCTTTAATTTAA+CGG | 0.337186 | 2_4:+52323631 | None:intergenic |
| TTGAATCCAATTAAAATATT+CGG | 0.338246 | 2_4:-52318802 | Msa0334140:CDS |
| TATTTATTGCAGAGTTAAAT+CGG | 0.349157 | 2_4:+52323604 | None:intergenic |
| TGAGAATGAAGTCGAGGTTA+AGG | 0.351881 | 2_4:-52321976 | Msa0334140:CDS |
| CACTGCACTCTCTCTGGTGT+TGG | 0.353004 | 2_4:-52323530 | Msa0334140:five_prime_UTR |
| GTTAAAGGAGATGCTGTTAC+AGG | 0.353959 | 2_4:-52320417 | Msa0334140:intron |
| TTCTCTTTGTTCCTGAATAC+AGG | 0.355373 | 2_4:+52321939 | None:intergenic |
| ATGGTGCTTCACCTGTATTC+AGG | 0.357859 | 2_4:-52321950 | Msa0334140:CDS |
| TTCATTTATACATGTTCAAT+TGG | 0.358064 | 2_4:-52318347 | Msa0334140:three_prime_UTR |
| GCTTCTGCCTCATTGCAAAA+AGG | 0.366733 | 2_4:-52321365 | Msa0334140:CDS |
| CTTACTGGGAATCACCTAAA+AGG | 0.369692 | 2_4:-52320497 | Msa0334140:CDS |
| AGGGTCCTCACTGGTCTCTC+TGG | 0.383639 | 2_4:+52322026 | None:intergenic |
| GGAAAGGCTTAGCCTTTCTA+TGG | 0.386528 | 2_4:+52319896 | None:intergenic |
| ATAATGGTCATTACCTGGTT+TGG | 0.399636 | 2_4:+52318730 | None:intergenic |
| CAGGAACAAAGAGAAAGTTT+TGG | 0.404050 | 2_4:-52321931 | Msa0334140:CDS |
| AATTTAACAGACGGACCGTT+GGG | 0.405139 | 2_4:+52320741 | None:intergenic |
| TTGGCAGTCCATTCTTTGTA+GGG | 0.408214 | 2_4:-52318402 | Msa0334140:three_prime_UTR |
| CCATTCCACTGCACTCTCTC+TGG | 0.409561 | 2_4:-52323536 | Msa0334140:five_prime_UTR |
| AGCTGTGGCTGTGCCCAAAA+AGG | 0.410300 | 2_4:-52322060 | Msa0334140:CDS |
| CACATATCTGCAAACTCATC+AGG | 0.414305 | 2_4:+52318515 | None:intergenic |
| TTAGCCTTTCTATGGTCCTT+CGG | 0.432964 | 2_4:+52319904 | None:intergenic |
| GAGCTCAACAAGCTCGTTCA+AGG | 0.438472 | 2_4:+52321306 | None:intergenic |
| GGCTGGAACATTTGCAAAGA+AGG | 0.442018 | 2_4:-52318588 | Msa0334140:CDS |
| AATGGATTCTCATATAAAGT+TGG | 0.442109 | 2_4:+52318763 | None:intergenic |
| TCTTATCCTTCCATCCCAAA+AGG | 0.448553 | 2_4:+52322006 | None:intergenic |
| AAATAAGCTGGTTATGTTCA+AGG | 0.453360 | 2_4:+52318070 | None:intergenic |
| TCTGAGATCACCGTCACAAC+AGG | 0.462455 | 2_4:-52323503 | Msa0334140:intron |
| GCATGAGATGGCCAATCCTC+TGG | 0.463080 | 2_4:-52318540 | Msa0334140:CDS |
| ATGGATTCTCATATAAAGTT+GGG | 0.466075 | 2_4:+52318764 | None:intergenic |
| CTGCACTCTCTCTGGTGTTG+GGG | 0.469674 | 2_4:-52323528 | Msa0334140:five_prime_UTR |
| AGGCAAAAGATCTTTATCTC+TGG | 0.470351 | 2_4:-52320776 | Msa0334140:CDS |
| CATTTCACTAAAACTAAGAA+TGG | 0.471289 | 2_4:-52318464 | Msa0334140:three_prime_UTR |
| AGCATAGTATCATAGTTTGA+TGG | 0.475248 | 2_4:+52318293 | None:intergenic |
| TGCAGAGTTAAATCGGGTCG+TGG | 0.478404 | 2_4:+52323611 | None:intergenic |
| TGATAAAATGACATTGATTG+AGG | 0.479641 | 2_4:-52318926 | Msa0334140:intron |
| GCATAAGCCAAGTCAATCTC+AGG | 0.486472 | 2_4:+52318093 | None:intergenic |
| CTCATCAGGCTCCAGAGGAT+TGG | 0.500537 | 2_4:+52318529 | None:intergenic |
| CCGACATTTGATGTTGAACC+TGG | 0.503744 | 2_4:-52321392 | Msa0334140:CDS |
| GTAGTAGTGTTTAGCAGAGA+AGG | 0.507024 | 2_4:-52318129 | Msa0334140:three_prime_UTR |
| ATTTATTGCAGAGTTAAATC+GGG | 0.508846 | 2_4:+52323605 | None:intergenic |
| TGATTTGTAGCCAAATAACA+TGG | 0.511138 | 2_4:-52322111 | Msa0334140:intron |
| TTTGATGAAAATGTCAAAAG+AGG | 0.513130 | 2_4:+52320467 | None:intergenic |
| CCAGAGAGAGTGCAGTGGAA+TGG | 0.515643 | 2_4:+52323536 | None:intergenic |
| TATATGGTTCCGAAATTACC+AGG | 0.519157 | 2_4:-52319836 | Msa0334140:intron |
| TGGAGGAATTGAAGCTTACT+GGG | 0.524362 | 2_4:-52320511 | Msa0334140:CDS |
| CTTATCCTTCCATCCCAAAA+GGG | 0.530204 | 2_4:+52322007 | None:intergenic |
| AAAGATTAATGGGCCTATGC+GGG | 0.533247 | 2_4:-52323659 | Msa0334140:five_prime_UTR |
| AATAAGCTGGTTATGTTCAA+GGG | 0.536671 | 2_4:+52318071 | None:intergenic |
| ATTATATGTGTCGCCAAACC+AGG | 0.539453 | 2_4:-52318743 | Msa0334140:intron |
| GCATAGTATCATAGTTTGAT+GGG | 0.542158 | 2_4:+52318294 | None:intergenic |
| AAATTTAACAGACGGACCGT+TGG | 0.547683 | 2_4:+52320740 | None:intergenic |
| TGGCAGTCCATTCTTTGTAG+GGG | 0.549352 | 2_4:-52318401 | Msa0334140:three_prime_UTR |
| AATGAGGCAGAAGCGATACC+AGG | 0.551260 | 2_4:+52321374 | None:intergenic |
| CATCCCAAAAGGGTCCTCAC+TGG | 0.551306 | 2_4:+52322017 | None:intergenic |
| GAAGTCGAGGTTAAGGAGAA+TGG | 0.558717 | 2_4:-52321969 | Msa0334140:CDS |
| GAAGAGAAAACGAAGCGAAA+AGG | 0.560289 | 2_4:-52322087 | Msa0334140:CDS |
| GGAAGTGAAGAAGCTAACCT+AGG | 0.562939 | 2_4:+52323557 | None:intergenic |
| AAAAGATCTTTATCTCTGGA+TGG | 0.569362 | 2_4:-52320772 | Msa0334140:CDS |
| GCTAACCTAGGGTTCTTTCG+AGG | 0.579966 | 2_4:+52323569 | None:intergenic |
| TTGATGAAAATGTCAAAAGA+GGG | 0.581244 | 2_4:+52320468 | None:intergenic |
| AATCCAATTAAAATATTCGG+TGG | 0.581638 | 2_4:-52318799 | Msa0334140:CDS |
| GCAAACTCATCAGGCTCCAG+AGG | 0.583650 | 2_4:+52318524 | None:intergenic |
| TTTAACGGAAATGCCCGCAT+AGG | 0.584749 | 2_4:+52323646 | None:intergenic |
| AAGGAGGAAAATGCATGAGA+TGG | 0.589573 | 2_4:-52318552 | Msa0334140:CDS |
| GCAGAGTTAAATCGGGTCGT+GGG | 0.590717 | 2_4:+52323612 | None:intergenic |
| GTTGAATCGAAAGAAACTAA+AGG | 0.591875 | 2_4:-52321334 | Msa0334140:CDS |
| CAGATCCTCGAAAGAACCCT+AGG | 0.591950 | 2_4:-52323574 | Msa0334140:five_prime_UTR |
| AACTCCGAAGGACCATAGAA+AGG | 0.592135 | 2_4:-52319908 | Msa0334140:CDS |
| TGAAAATGTCAAAAGAGGGC+GGG | 0.598198 | 2_4:+52320472 | None:intergenic |
| GAAGTGAAGAAGCTAACCTA+GGG | 0.600617 | 2_4:+52323558 | None:intergenic |
| TACTTGTTTAGGTTGGTCCA+CGG | 0.602021 | 2_4:-52318831 | Msa0334140:intron |
| CTGATGAGTTTGCAGATATG+TGG | 0.604261 | 2_4:-52318514 | Msa0334140:CDS |
| GATTTGTAGCCAAATAACAT+GGG | 0.607660 | 2_4:-52322110 | Msa0334140:intron |
| AAAAGATTAATGGGCCTATG+CGG | 0.609738 | 2_4:-52323660 | Msa0334140:five_prime_UTR |
| AAGCGAAAAGGCTGAAGCTG+TGG | 0.609947 | 2_4:-52322075 | Msa0334140:CDS |
| AGAAGGTCAAAGCAAAGACA+AGG | 0.616949 | 2_4:-52318571 | Msa0334140:CDS |
| TTTAACTCTGCAATAAATAG+CGG | 0.617711 | 2_4:-52323600 | Msa0334140:five_prime_UTR |
| CACCCTATATTCGACACGAA+TGG | 0.618094 | 2_4:-52318435 | Msa0334140:three_prime_UTR |
| AATTTGTCTGACTCATTGTG+AGG | 0.622655 | 2_4:+52318964 | None:intergenic |
| TGAAAATGAGAATGAAGTCG+AGG | 0.626692 | 2_4:-52321982 | Msa0334140:CDS |
| ATTGGATTCAAGCAGAACCG+TGG | 0.628585 | 2_4:+52318814 | None:intergenic |
| ATGAAAATGTCAAAAGAGGG+CGG | 0.629935 | 2_4:+52320471 | None:intergenic |
| AGGTCAAAGCAAAGACAAGG+AGG | 0.640567 | 2_4:-52318568 | Msa0334140:CDS |
| AATATACAGTATAAGTAAGG+CGG | 0.644721 | 2_4:+52318190 | None:intergenic |
| ATTTGTAGCCAAATAACATG+GGG | 0.646994 | 2_4:-52322109 | Msa0334140:intron |
| TGGATGGCAAAATGCCCCAA+CGG | 0.651109 | 2_4:-52320756 | Msa0334140:CDS |
| ATGTGAATTTCAGTGCAGGA+AGG | 0.660599 | 2_4:-52320796 | Msa0334140:intron |
| CCAGGTTCAACATCAAATGT+CGG | 0.661077 | 2_4:+52321392 | None:intergenic |
| TACAGTATAAGTAAGGCGGT+AGG | 0.661796 | 2_4:+52318194 | None:intergenic |
| ATTTAACAGACGGACCGTTG+GGG | 0.668767 | 2_4:+52320742 | None:intergenic |
| GAAATGAATACCTGTTGTGA+CGG | 0.682631 | 2_4:+52323493 | None:intergenic |
| CTCAACAAGCTCGTTCAAGG+TGG | 0.686995 | 2_4:+52321309 | None:intergenic |
| CAACACCAGAGAGAGTGCAG+TGG | 0.711326 | 2_4:+52323531 | None:intergenic |
| TTGCTCCAGAGAGACCAGTG+AGG | 0.749614 | 2_4:-52322031 | Msa0334140:CDS |
| GAGTCAGACAAATTACCCCG+AGG | 0.769107 | 2_4:-52318955 | Msa0334140:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTAATTGTTTAATTTTCT+AGG | - | chr2_4:52318592-52318611 | Msa0334140:CDS | 10.0% |
| !!! | ATTTTAAAAGTATTTTATTG+AGG | + | chr2_4:52318715-52318734 | None:intergenic | 10.0% |
| !! | AAAATTAAATTAATGTCAAA+TGG | - | chr2_4:52320003-52320022 | Msa0334140:intron | 10.0% |
| !!! | TTATTTAATTATTGTTTTTC+TGG | - | chr2_4:52323493-52323512 | Msa0334140:intron | 10.0% |
| !! | ATTTATTGTACAAATTTATG+AGG | - | chr2_4:52318406-52318425 | Msa0334140:three_prime_UTR | 15.0% |
| !!! | TAAAATTTTAAAGTACTTTG+CGG | + | chr2_4:52318497-52318516 | None:intergenic | 15.0% |
| !! | GTAAAATAAAAAATTACTCA+TGG | + | chr2_4:52318547-52318566 | None:intergenic | 15.0% |
| !!! | AATATTTTTTCTCATTCAAA+CGG | - | chr2_4:52318630-52318649 | Msa0334140:intron | 15.0% |
| !! | ATTAATATGTCAACATTTAA+CGG | + | chr2_4:52318920-52318939 | None:intergenic | 15.0% |
| !!! | AGTGTTATTAAATTTTAACA+AGG | + | chr2_4:52318962-52318981 | None:intergenic | 15.0% |
| !! | TTGTTAAAATTTAATAACAC+TGG | - | chr2_4:52318961-52318980 | Msa0334140:CDS | 15.0% |
| !! | TATATACATATGATTATTGA+AGG | - | chr2_4:52319045-52319064 | Msa0334140:intron | 15.0% |
| !! | AAATACAGCAAAATATATTT+GGG | + | chr2_4:52319855-52319874 | None:intergenic | 15.0% |
| !! | ATTGATCATAAACTTATTAT+AGG | - | chr2_4:52320300-52320319 | Msa0334140:intron | 15.0% |
| !!! | GATTATTTTTTATGACATTA+AGG | - | chr2_4:52320475-52320494 | Msa0334140:CDS | 15.0% |
| !!! | CTACACTTTAAAATTTAAAA+TGG | + | chr2_4:52320710-52320729 | None:intergenic | 15.0% |
| !! | AATAATATATAATCATAGCA+AGG | + | chr2_4:52321066-52321085 | None:intergenic | 15.0% |
| !!! | TAATGCTTTAAAAATTTGAA+AGG | + | chr2_4:52322172-52322191 | None:intergenic | 15.0% |
| !!! | TTGGTTATTTTTTAATGTAT+AGG | - | chr2_4:52322567-52322586 | Msa0334140:intron | 15.0% |
| !! | TTGAATCCAATTAAAATATT+CGG | - | chr2_4:52322915-52322934 | Msa0334140:intron | 15.0% |
| !! | AAAAATATACAGTATAAGTA+AGG | + | chr2_4:52323533-52323552 | None:intergenic | 15.0% |
| !! | GCTATATTTATATTCTTATA+TGG | - | chr2_4:52323553-52323572 | Msa0334140:five_prime_UTR | 15.0% |
| !! | AGGAGTAATAAAAAGATTAA+TGG | - | chr2_4:52318047-52318066 | Msa0334140:three_prime_UTR | 20.0% |
| !! | GGAGTAATAAAAAGATTAAT+GGG | - | chr2_4:52318048-52318067 | Msa0334140:three_prime_UTR | 20.0% |
| !!! | TGGGTTTATCTTTAATTTAA+CGG | + | chr2_4:52318089-52318108 | None:intergenic | 20.0% |
| !! | TATTTATTGCAGAGTTAAAT+CGG | + | chr2_4:52318116-52318135 | None:intergenic | 20.0% |
| !!! | AAAATTTTAAAGTACTTTGC+GGG | + | chr2_4:52318496-52318515 | None:intergenic | 20.0% |
| !!! | ATCGTTTTAAAGTAAAAACA+AGG | + | chr2_4:52318666-52318685 | None:intergenic | 20.0% |
| !! | AATTTAATAACACTGGATAT+AGG | - | chr2_4:52318968-52318987 | Msa0334140:CDS | 20.0% |
| !! | GAATTGTTATATTTGTATTG+AGG | - | chr2_4:52319010-52319029 | Msa0334140:intron | 20.0% |
| !! | TAAAATAATTCAAACCAAAC+AGG | - | chr2_4:52319430-52319449 | Msa0334140:intron | 20.0% |
| !! | GTGCATAAAAATTAAACTTT+GGG | + | chr2_4:52319456-52319475 | None:intergenic | 20.0% |
| !! | AGTGCATAAAAATTAAACTT+TGG | + | chr2_4:52319457-52319476 | None:intergenic | 20.0% |
| !!! | AAAATATATTTGGGTTTTGT+GGG | + | chr2_4:52319846-52319865 | None:intergenic | 20.0% |
| !! | CAAATACAGCAAAATATATT+TGG | + | chr2_4:52319856-52319875 | None:intergenic | 20.0% |
| !!! | TTCTTCATGTTTATTTTTTG+AGG | - | chr2_4:52320442-52320461 | Msa0334140:CDS | 20.0% |
| !! | TGTCATAAAAAATAATCGAA+AGG | + | chr2_4:52320472-52320491 | None:intergenic | 20.0% |
| !! | ATACATAGAAAATCCAATTT+GGG | + | chr2_4:52320759-52320778 | None:intergenic | 20.0% |
| !! | AATACATAGAAAATCCAATT+TGG | + | chr2_4:52320760-52320779 | None:intergenic | 20.0% |
| !! | CAGTTTACTTAATTTAAATC+TGG | - | chr2_4:52320784-52320803 | Msa0334140:CDS | 20.0% |
| !! | TTTACTTAATTTAAATCTGG+CGG | - | chr2_4:52320787-52320806 | Msa0334140:intron | 20.0% |
| !! | CTAACTAAAAATTTAACAGA+CGG | + | chr2_4:52320988-52321007 | None:intergenic | 20.0% |
| !! | GCTATGATTATATATTATTC+TGG | - | chr2_4:52321067-52321086 | Msa0334140:intron | 20.0% |
| !! | AAAAGAGAAATTAGTAAGAT+GGG | + | chr2_4:52321159-52321178 | None:intergenic | 20.0% |
| !! | TAAAAGAGAAATTAGTAAGA+TGG | + | chr2_4:52321160-52321179 | None:intergenic | 20.0% |
| !! | AGTTCTATAAATGTTATGTT+TGG | - | chr2_4:52321555-52321574 | Msa0334140:intron | 20.0% |
| !!! | AATTTTTAAAGCATTATCCT+TGG | - | chr2_4:52322176-52322195 | Msa0334140:intron | 20.0% |
| !!! | ATTTTTAAAGCATTATCCTT+GGG | - | chr2_4:52322177-52322196 | Msa0334140:intron | 20.0% |
| !!! | ATTGATAGTATATAAGGTTT+TGG | + | chr2_4:52322317-52322336 | None:intergenic | 20.0% |
| !!! | TTCTTCATTGATAGTATATA+AGG | + | chr2_4:52322323-52322342 | None:intergenic | 20.0% |
| !!! | AAGTAATGATTGTTTTACTA+TGG | - | chr2_4:52322341-52322360 | Msa0334140:intron | 20.0% |
| !!! | ACATCAGTTAAATGAATTTT+AGG | + | chr2_4:52322858-52322877 | None:intergenic | 20.0% |
| !!! | TTCTGAAAATAACTTCATAT+TGG | - | chr2_4:52323045-52323064 | Msa0334140:intron | 20.0% |
| !! | TTCATTTATACATGTTCAAT+TGG | - | chr2_4:52323370-52323389 | Msa0334140:intron | 20.0% |
| ! | ATTTATTGCAGAGTTAAATC+GGG | + | chr2_4:52318115-52318134 | None:intergenic | 25.0% |
| ! | TTTAACTCTGCAATAAATAG+CGG | - | chr2_4:52318117-52318136 | Msa0334140:three_prime_UTR | 25.0% |
| ! | AAAATTTAAAGGAACGCATA+TGG | + | chr2_4:52318468-52318487 | None:intergenic | 25.0% |
| !!! | TGCGGGTTTTTAAAATTTAA+AGG | + | chr2_4:52318479-52318498 | None:intergenic | 25.0% |
| !! | TTAATGCATATGTTCTTTTC+CGG | - | chr2_4:52319186-52319205 | Msa0334140:intron | 25.0% |
| !!! | CTATTTGTAAGCTATTTCTA+TGG | - | chr2_4:52319245-52319264 | Msa0334140:intron | 25.0% |
| !!! | CAAAATATATTTGGGTTTTG+TGG | + | chr2_4:52319847-52319866 | None:intergenic | 25.0% |
| !!! | TTGTTTATTTTGGCTATGTT+TGG | - | chr2_4:52319905-52319924 | Msa0334140:CDS | 25.0% |
| ! | TAATAGCTTAACTAAGTTGT+TGG | + | chr2_4:52319931-52319950 | None:intergenic | 25.0% |
| !! | ATTCTTTTACTGCACATAAA+GGG | + | chr2_4:52320195-52320214 | None:intergenic | 25.0% |
| !! | AATTCTTTTACTGCACATAA+AGG | + | chr2_4:52320196-52320215 | None:intergenic | 25.0% |
| !! | AAAACTTCTTCCTTTTATTG+CGG | - | chr2_4:52320255-52320274 | Msa0334140:intron | 25.0% |
| ! | GAAAATTCACTGTTTGTTTA+TGG | - | chr2_4:52320556-52320575 | Msa0334140:intron | 25.0% |
| ! | CAACAACATTTGTAACAAAA+TGG | + | chr2_4:52320596-52320615 | None:intergenic | 25.0% |
| !! | CATTTTGTTACAAATGTTGT+TGG | - | chr2_4:52320594-52320613 | Msa0334140:intron | 25.0% |
| ! | AACTCAAACTTGAGATTAAA+TGG | + | chr2_4:52320828-52320847 | None:intergenic | 25.0% |
| !!! | GTTAAATTTTTAGTTAGTGC+CGG | - | chr2_4:52320991-52321010 | Msa0334140:intron | 25.0% |
| ! | TATAATCATAGCAAGGAAAT+TGG | + | chr2_4:52321059-52321078 | None:intergenic | 25.0% |
| ! | CAAAAAGAAGAATAAAGAAC+TGG | + | chr2_4:52321103-52321122 | None:intergenic | 25.0% |
| ! | TTGATGAAAATGTCAAAAGA+GGG | + | chr2_4:52321252-52321271 | None:intergenic | 25.0% |
| ! | TTTGATGAAAATGTCAAAAG+AGG | + | chr2_4:52321253-52321272 | None:intergenic | 25.0% |
| !!! | ATTTTGAAAAAGATGCATAC+TGG | - | chr2_4:52321272-52321291 | Msa0334140:intron | 25.0% |
| !!! | TGTTTTGGATTCAAAAGTTA+AGG | - | chr2_4:52321351-52321370 | Msa0334140:CDS | 25.0% |
| !! | TTGATAATACGATCTTAGTT+TGG | - | chr2_4:52321379-52321398 | Msa0334140:CDS | 25.0% |
| ! | AATTTAAATTGAGCAGAATG+TGG | - | chr2_4:52321595-52321614 | Msa0334140:intron | 25.0% |
| ! | ATTTAAATTGAGCAGAATGT+GGG | - | chr2_4:52321596-52321615 | Msa0334140:intron | 25.0% |
| !!! | TTCACAATTTTCTCTAGTTT+TGG | - | chr2_4:52321636-52321655 | Msa0334140:intron | 25.0% |
| ! | CTGAGTTATGTATTTGAATA+GGG | - | chr2_4:52321668-52321687 | Msa0334140:intron | 25.0% |
| ! | TGAGTTATGTATTTGAATAG+GGG | - | chr2_4:52321669-52321688 | Msa0334140:intron | 25.0% |
| !!! | GTTTAAACTTTAAAATCCGT+TGG | - | chr2_4:52321974-52321993 | Msa0334140:CDS | 25.0% |
| !! | TATAATTATGCCAGTTGTTT+TGG | - | chr2_4:52322050-52322069 | Msa0334140:CDS | 25.0% |
| ! | TTCACTCAAGTAAAAAACTA+TGG | + | chr2_4:52322080-52322099 | None:intergenic | 25.0% |
| ! | TATACTAAAGCCTATTGTAA+AGG | + | chr2_4:52322205-52322224 | None:intergenic | 25.0% |
| !! | TCGTGATATCATATTTCTAT+TGG | + | chr2_4:52322267-52322286 | None:intergenic | 25.0% |
| !! | TAATCCAGTGAACTTAATTT+TGG | - | chr2_4:52322548-52322567 | Msa0334140:intron | 25.0% |
| ! | ATAACCAAAATTAAGTTCAC+TGG | + | chr2_4:52322555-52322574 | None:intergenic | 25.0% |
| !!! | CAATCAATGTCATTTTATCA+AGG | + | chr2_4:52322791-52322810 | None:intergenic | 25.0% |
| !! | TGATAAAATGACATTGATTG+AGG | - | chr2_4:52322791-52322810 | Msa0334140:intron | 25.0% |
| ! | AATCCAATTAAAATATTCGG+TGG | - | chr2_4:52322918-52322937 | Msa0334140:intron | 25.0% |
| ! | ATGGATTCTCATATAAAGTT+GGG | + | chr2_4:52322956-52322975 | None:intergenic | 25.0% |
| !! | AATGGATTCTCATATAAAGT+TGG | + | chr2_4:52322957-52322976 | None:intergenic | 25.0% |
| !!! | TGTTTTTAACCTCTTTATGT+TGG | - | chr2_4:52323071-52323090 | Msa0334140:intron | 25.0% |
| !!! | TTCTTAGTTTTAGTGAAATG+AGG | + | chr2_4:52323253-52323272 | None:intergenic | 25.0% |
| ! | CATTTCACTAAAACTAAGAA+TGG | - | chr2_4:52323253-52323272 | Msa0334140:intron | 25.0% |
| ! | AATATACAGTATAAGTAAGG+CGG | + | chr2_4:52323530-52323549 | None:intergenic | 25.0% |
| ! | GATTAGTAGAAAAAATAAGC+TGG | + | chr2_4:52323662-52323681 | None:intergenic | 25.0% |
| ! | AAGAGTACATCGAATAACAT+TGG | + | chr2_4:52318574-52318593 | None:intergenic | 30.0% |
| !!! | GTGCAAGATTTTGATTAGAT+TGG | + | chr2_4:52318750-52318769 | None:intergenic | 30.0% |
| TACATCTCAAATCATTTCAG+CGG | - | chr2_4:52318789-52318808 | Msa0334140:CDS | 30.0% | |
| TTAATAACACTGGATATAGG+TGG | - | chr2_4:52318971-52318990 | Msa0334140:CDS | 30.0% | |
| TAATAACACTGGATATAGGT+GGG | - | chr2_4:52318972-52318991 | Msa0334140:CDS | 30.0% | |
| ATAGGTGGGTGTTAAATTAT+AGG | - | chr2_4:52318986-52319005 | Msa0334140:intron | 30.0% | |
| TGTCTGATTATCAATTGTTC+AGG | - | chr2_4:52319079-52319098 | Msa0334140:intron | 30.0% | |
| TAAGCTGGTTATCTAAACAA+CGG | + | chr2_4:52319218-52319237 | None:intergenic | 30.0% | |
| !!! | GCTGTTTTAATAAGCTATCT+TGG | - | chr2_4:52319305-52319324 | Msa0334140:intron | 30.0% |
| GAGACTATTTGAAAGAACTT+AGG | + | chr2_4:52319385-52319404 | None:intergenic | 30.0% | |
| TAAAAAGTCACACACATGAT+TGG | + | chr2_4:52319499-52319518 | None:intergenic | 30.0% | |
| ! | TGATTTGTAGCCAAATAACA+TGG | - | chr2_4:52319606-52319625 | Msa0334140:intron | 30.0% |
| GATTTGTAGCCAAATAACAT+GGG | - | chr2_4:52319607-52319626 | Msa0334140:intron | 30.0% | |
| ATTTGTAGCCAAATAACATG+GGG | - | chr2_4:52319608-52319627 | Msa0334140:intron | 30.0% | |
| !!! | GTTTGTGTTTGTTTTGAGTT+CGG | - | chr2_4:52319880-52319899 | Msa0334140:CDS | 30.0% |
| !! | GAGTTCGGATTTGTTTATTT+TGG | - | chr2_4:52319895-52319914 | Msa0334140:CDS | 30.0% |
| AGTTAAGCTATTATGCTGTA+AGG | - | chr2_4:52319938-52319957 | Msa0334140:intron | 30.0% | |
| GTTAAGCTATTATGCTGTAA+GGG | - | chr2_4:52319939-52319958 | Msa0334140:intron | 30.0% | |
| AAGAAGCTGAAAACAGTTTA+TGG | - | chr2_4:52320078-52320097 | Msa0334140:intron | 30.0% | |
| AAACACTTGTAAGACTGTTT+GGG | + | chr2_4:52320133-52320152 | None:intergenic | 30.0% | |
| TAAACACTTGTAAGACTGTT+TGG | + | chr2_4:52320134-52320153 | None:intergenic | 30.0% | |
| ! | AAACTTCTTCCTTTTATTGC+GGG | - | chr2_4:52320256-52320275 | Msa0334140:intron | 30.0% |
| !!! | GGGTTATTGGTTTTTGATTA+TGG | - | chr2_4:52320276-52320295 | Msa0334140:intron | 30.0% |
| ! | TTGTTATCCTTTTTGCAATG+AGG | + | chr2_4:52320362-52320381 | None:intergenic | 30.0% |
| TCATTGCAAAAAGGATAACA+AGG | - | chr2_4:52320361-52320380 | Msa0334140:intron | 30.0% | |
| GTTGAATCGAAAGAAACTAA+AGG | - | chr2_4:52320383-52320402 | Msa0334140:intron | 30.0% | |
| AATCTCTTTCCTTTATGTGA+TGG | - | chr2_4:52320635-52320654 | Msa0334140:intron | 30.0% | |
| !! | TTCCTTTATGTGATGGATAA+TGG | - | chr2_4:52320642-52320661 | Msa0334140:intron | 30.0% |
| ATCCATTATCCATCACATAA+AGG | + | chr2_4:52320647-52320666 | None:intergenic | 30.0% | |
| ATAGAAAATCCAATTTGGGA+GGG | + | chr2_4:52320755-52320774 | None:intergenic | 30.0% | |
| ACTTGCTTAAGATTAAGAAC+AGG | + | chr2_4:52320851-52320870 | None:intergenic | 30.0% | |
| TCTAGTCTATTTGTGACATT+TGG | - | chr2_4:52320870-52320889 | Msa0334140:intron | 30.0% | |
| AAAAGATCTTTATCTCTGGA+TGG | - | chr2_4:52320945-52320964 | Msa0334140:intron | 30.0% | |
| CAAACAGATGAGAATATTAC+CGG | + | chr2_4:52321013-52321032 | None:intergenic | 30.0% | |
| !! | CTCATCTGTTTGTTATCTTA+AGG | - | chr2_4:52321021-52321040 | Msa0334140:intron | 30.0% |
| ! | ATAATACGATCTTAGTTTGG+TGG | - | chr2_4:52321382-52321401 | Msa0334140:CDS | 30.0% |
| TATAGAACTTCTCAAGTCAA+CGG | + | chr2_4:52321544-52321563 | None:intergenic | 30.0% | |
| AACTAGAGAAAATTGTGAAC+AGG | + | chr2_4:52321635-52321654 | None:intergenic | 30.0% | |
| CCTATTCAAATACATAACTC+AGG | + | chr2_4:52321670-52321689 | None:intergenic | 30.0% | |
| CCTGAGTTATGTATTTGAAT+AGG | - | chr2_4:52321667-52321686 | Msa0334140:intron | 30.0% | |
| CAATTGAGAAAACAAAAACG+TGG | + | chr2_4:52321851-52321870 | None:intergenic | 30.0% | |
| !! | CAATTGTTGATGACCATATA+TGG | - | chr2_4:52321865-52321884 | Msa0334140:intron | 30.0% |
| TGTTGAAAACAACAAACCAA+CGG | + | chr2_4:52321993-52322012 | None:intergenic | 30.0% | |
| !! | ATTGTTTTACTATGGTTGCA+TGG | - | chr2_4:52322349-52322368 | Msa0334140:intron | 30.0% |
| ACTGATTATTTGTAAACCAC+TGG | - | chr2_4:52322382-52322401 | Msa0334140:intron | 30.0% | |
| TACATAATAATAGCATCCAG+TGG | + | chr2_4:52322401-52322420 | None:intergenic | 30.0% | |
| ! | TAAACAATGCTATTTGATGC+TGG | - | chr2_4:52322601-52322620 | Msa0334140:intron | 30.0% |
| ACATGTTCAATTGGAGATAT+AGG | - | chr2_4:52323379-52323398 | Msa0334140:intron | 30.0% | |
| GCATAGTATCATAGTTTGAT+GGG | + | chr2_4:52323426-52323445 | None:intergenic | 30.0% | |
| AGCATAGTATCATAGTTTGA+TGG | + | chr2_4:52323427-52323446 | None:intergenic | 30.0% | |
| AATAAGCTGGTTATGTTCAA+GGG | + | chr2_4:52323649-52323668 | None:intergenic | 30.0% | |
| AAATAAGCTGGTTATGTTCA+AGG | + | chr2_4:52323650-52323669 | None:intergenic | 30.0% | |
| ! | AAAAGATTAATGGGCCTATG+CGG | - | chr2_4:52318057-52318076 | Msa0334140:three_prime_UTR | 35.0% |
| GAAATGAATACCTGTTGTGA+CGG | + | chr2_4:52318227-52318246 | None:intergenic | 35.0% | |
| TTTAAAGGAACGCATATGGT+TGG | + | chr2_4:52318464-52318483 | None:intergenic | 35.0% | |
| ACAAATAGCTGCAAATAAGC+TGG | + | chr2_4:52319233-52319252 | None:intergenic | 35.0% | |
| AATTAAACTTTGGGCCTGTT+TGG | + | chr2_4:52319447-52319466 | None:intergenic | 35.0% | |
| GTAACGACTCTTTACACTAA+CGG | - | chr2_4:52319539-52319558 | Msa0334140:intron | 35.0% | |
| TTTCTCTTCCCCATGTTATT+TGG | + | chr2_4:52319619-52319638 | None:intergenic | 35.0% | |
| TGAAAATGAGAATGAAGTCG+AGG | - | chr2_4:52319735-52319754 | Msa0334140:intron | 35.0% | |
| TTCTCTTTGTTCCTGAATAC+AGG | + | chr2_4:52319781-52319800 | None:intergenic | 35.0% | |
| ! | CAGGAACAAAGAGAAAGTTT+TGG | - | chr2_4:52319786-52319805 | Msa0334140:intron | 35.0% |
| !!! | AAGTTTTGGTTACTTGCTCT+AGG | - | chr2_4:52319800-52319819 | Msa0334140:intron | 35.0% |
| AAACTACCTTGAAGAGCTTA+TGG | - | chr2_4:52320055-52320074 | Msa0334140:intron | 35.0% | |
| !! | TTCCTTTTATTGCGGGTTAT+TGG | - | chr2_4:52320263-52320282 | Msa0334140:intron | 35.0% |
| AACCAATAACCCGCAATAAA+AGG | + | chr2_4:52320268-52320287 | None:intergenic | 35.0% | |
| CATAGAAAATCCAATTTGGG+AGG | + | chr2_4:52320756-52320775 | None:intergenic | 35.0% | |
| CTGAAATTCACATACACAGA+AGG | + | chr2_4:52320914-52320933 | None:intergenic | 35.0% | |
| AGGCAAAAGATCTTTATCTC+TGG | - | chr2_4:52320941-52320960 | Msa0334140:intron | 35.0% | |
| ! | AGAAATTAGTAAGATGGGCT+CGG | + | chr2_4:52321154-52321173 | None:intergenic | 35.0% |
| ATGAAAATGTCAAAAGAGGG+CGG | + | chr2_4:52321249-52321268 | None:intergenic | 35.0% | |
| TGCATACTGGAAACTGTTAA+AGG | - | chr2_4:52321285-52321304 | Msa0334140:CDS | 35.0% | |
| ! | TACTCTTCTATGCACTGTTT+TGG | - | chr2_4:52321336-52321355 | Msa0334140:CDS | 35.0% |
| AGAAAACAAAAACGTGGTCA+TGG | + | chr2_4:52321845-52321864 | None:intergenic | 35.0% | |
| GGTAATTTCGGAACCATATA+TGG | + | chr2_4:52321881-52321900 | None:intergenic | 35.0% | |
| TATATGGTTCCGAAATTACC+AGG | - | chr2_4:52321881-52321900 | Msa0334140:intron | 35.0% | |
| AGACACAAACCTGGTAATTT+CGG | + | chr2_4:52321893-52321912 | None:intergenic | 35.0% | |
| AAAAATAAGCGCAAGCATCT+TGG | - | chr2_4:52322026-52322045 | Msa0334140:CDS | 35.0% | |
| AACATTGCCGATGGATAAAT+TGG | - | chr2_4:52322137-52322156 | Msa0334140:intron | 35.0% | |
| ACATTGCCGATGGATAAATT+GGG | - | chr2_4:52322138-52322157 | Msa0334140:intron | 35.0% | |
| CACAAACCCAATTTATCCAT+CGG | + | chr2_4:52322147-52322166 | None:intergenic | 35.0% | |
| ATTGTCTACACTTCTAGTCT+AGG | - | chr2_4:52322426-52322445 | Msa0334140:intron | 35.0% | |
| ! | GTATGATTGATGGATCTACA+GGG | - | chr2_4:52322509-52322528 | Msa0334140:intron | 35.0% |
| !!! | CTTGCATTTTTTTGCGAATG+TGG | - | chr2_4:52322628-52322647 | Msa0334140:intron | 35.0% |
| TCTGCATGAGAATAAAAACG+TGG | + | chr2_4:52322725-52322744 | None:intergenic | 35.0% | |
| AATTTGTCTGACTCATTGTG+AGG | + | chr2_4:52322756-52322775 | None:intergenic | 35.0% | |
| ! | TCATTTTATCAAGGCTTCCT+CGG | + | chr2_4:52322782-52322801 | None:intergenic | 35.0% |
| ATTGATTGAGGTCTGCAAAT+TGG | - | chr2_4:52322803-52322822 | Msa0334140:intron | 35.0% | |
| TGTGTGCAAACTACTTGTTT+AGG | - | chr2_4:52322875-52322894 | Msa0334140:intron | 35.0% | |
| TGCAAACTACTTGTTTAGGT+TGG | - | chr2_4:52322879-52322898 | Msa0334140:intron | 35.0% | |
| !!! | CTGCCACCGAATATTTTAAT+TGG | + | chr2_4:52322924-52322943 | None:intergenic | 35.0% |
| !! | AAAATATTCGGTGGCAGTTT+TGG | - | chr2_4:52322927-52322946 | Msa0334140:intron | 35.0% |
| ATAATGGTCATTACCTGGTT+TGG | + | chr2_4:52322990-52323009 | None:intergenic | 35.0% | |
| AGAACATAATGGTCATTACC+TGG | + | chr2_4:52322995-52323014 | None:intergenic | 35.0% | |
| CTACAACAACCAACATAAAG+AGG | + | chr2_4:52323083-52323102 | None:intergenic | 35.0% | |
| !! | TTTTTAGCCTGAGATTGACT+TGG | - | chr2_4:52323617-52323636 | Msa0334140:five_prime_UTR | 35.0% |
| ! | AAAGATTAATGGGCCTATGC+GGG | - | chr2_4:52318058-52318077 | Msa0334140:three_prime_UTR | 40.0% |
| GAAGTGAAGAAGCTAACCTA+GGG | + | chr2_4:52318162-52318181 | None:intergenic | 40.0% | |
| !! | TGCACTTGTTTCTCGCTTTT+CGG | - | chr2_4:52318765-52318784 | Msa0334140:CDS | 40.0% |
| ATCTAAACAACGGTTCTCTC+CGG | + | chr2_4:52319208-52319227 | None:intergenic | 40.0% | |
| GAAGAGAAAACGAAGCGAAA+AGG | - | chr2_4:52319630-52319649 | Msa0334140:intron | 40.0% | |
| ! | GGAGCAACATCTTCCTTTTT+GGG | + | chr2_4:52319673-52319692 | None:intergenic | 40.0% |
| ! | TGGAGCAACATCTTCCTTTT+TGG | + | chr2_4:52319674-52319693 | None:intergenic | 40.0% |
| CTTATCCTTCCATCCCAAAA+GGG | + | chr2_4:52319713-52319732 | None:intergenic | 40.0% | |
| TCTTATCCTTCCATCCCAAA+AGG | + | chr2_4:52319714-52319733 | None:intergenic | 40.0% | |
| TGAGAATGAAGTCGAGGTTA+AGG | - | chr2_4:52319741-52319760 | Msa0334140:intron | 40.0% | |
| ! | GCTCTAGGCGTATTGTTTAT+AGG | - | chr2_4:52319815-52319834 | Msa0334140:intron | 40.0% |
| CTTCTTCCATAAGCTCTTCA+AGG | + | chr2_4:52320064-52320083 | None:intergenic | 40.0% | |
| CCAGGTTCAACATCAAATGT+CGG | + | chr2_4:52320328-52320347 | None:intergenic | 40.0% | |
| CAATTTGGGAGGGAAAACAA+AGG | + | chr2_4:52320745-52320764 | None:intergenic | 40.0% | |
| !!! | CTTTGTTTTCCCTCCCAAAT+TGG | - | chr2_4:52320743-52320762 | Msa0334140:CDS | 40.0% |
| GTGTATGTGAATTTCAGTGC+AGG | - | chr2_4:52320917-52320936 | Msa0334140:intron | 40.0% | |
| ATGTGAATTTCAGTGCAGGA+AGG | - | chr2_4:52320921-52320940 | Msa0334140:intron | 40.0% | |
| AATTTAACAGACGGACCGTT+GGG | + | chr2_4:52320979-52320998 | None:intergenic | 40.0% | |
| AAATTTAACAGACGGACCGT+TGG | + | chr2_4:52320980-52320999 | None:intergenic | 40.0% | |
| TGTGCACTGAAAAGCAATGA+AGG | + | chr2_4:52321183-52321202 | None:intergenic | 40.0% | |
| !! | TTGCTTTTCAGTGCACACAA+TGG | - | chr2_4:52321186-52321205 | Msa0334140:intron | 40.0% |
| ATGGAGGAATTGAAGCTTAC+TGG | - | chr2_4:52321205-52321224 | Msa0334140:intron | 40.0% | |
| TGGAGGAATTGAAGCTTACT+GGG | - | chr2_4:52321206-52321225 | Msa0334140:intron | 40.0% | |
| CTTACTGGGAATCACCTAAA+AGG | - | chr2_4:52321220-52321239 | Msa0334140:intron | 40.0% | |
| TGAAAATGTCAAAAGAGGGC+GGG | + | chr2_4:52321248-52321267 | None:intergenic | 40.0% | |
| GTTAAAGGAGATGCTGTTAC+AGG | - | chr2_4:52321300-52321319 | Msa0334140:CDS | 40.0% | |
| GAGATGCTGTTACAGGTATT+TGG | - | chr2_4:52321307-52321326 | Msa0334140:CDS | 40.0% | |
| !!! | TCTTAGTTTGGTGGTGCTTT+TGG | - | chr2_4:52321391-52321410 | Msa0334140:CDS | 40.0% |
| !!! | CTTAGTTTGGTGGTGCTTTT+GGG | - | chr2_4:52321392-52321411 | Msa0334140:CDS | 40.0% |
| !!! | TTAGTTTGGTGGTGCTTTTG+GGG | - | chr2_4:52321393-52321412 | Msa0334140:CDS | 40.0% |
| ! | TTTATGTGCGCACTTTTCTG+AGG | - | chr2_4:52321455-52321474 | Msa0334140:intron | 40.0% |
| !!! | GCGCACATGCATTTTTTTCT+TGG | - | chr2_4:52321710-52321729 | Msa0334140:intron | 40.0% |
| CCTTCGGAGTTTCAAAAATC+TGG | + | chr2_4:52321800-52321819 | None:intergenic | 40.0% | |
| !!! | CCAGATTTTTGAAACTCCGA+AGG | - | chr2_4:52321797-52321816 | Msa0334140:intron | 40.0% |
| ! | TTAGCCTTTCTATGGTCCTT+CGG | + | chr2_4:52321816-52321835 | None:intergenic | 40.0% |
| ACAAAAACGTGGTCATGGAA+AGG | + | chr2_4:52321840-52321859 | None:intergenic | 40.0% | |
| TGCAAATTCAGACACAAACC+TGG | + | chr2_4:52321902-52321921 | None:intergenic | 40.0% | |
| CTATGGCTAACCAAAACAAC+TGG | + | chr2_4:52322063-52322082 | None:intergenic | 40.0% | |
| TTCTTTGCTAACATTGCCGA+TGG | - | chr2_4:52322128-52322147 | Msa0334140:intron | 40.0% | |
| TCCTTGGGTTCCTTTACAAT+AGG | - | chr2_4:52322192-52322211 | Msa0334140:intron | 40.0% | |
| GTAGATCCATCAATCATACG+TGG | + | chr2_4:52322508-52322527 | None:intergenic | 40.0% | |
| ! | CGTATGATTGATGGATCTAC+AGG | - | chr2_4:52322508-52322527 | Msa0334140:intron | 40.0% |
| ! | ATTTTATCAAGGCTTCCTCG+GGG | + | chr2_4:52322780-52322799 | None:intergenic | 40.0% |
| ! | CATTTTATCAAGGCTTCCTC+GGG | + | chr2_4:52322781-52322800 | None:intergenic | 40.0% |
| !! | TACTTGTTTAGGTTGGTCCA+CGG | - | chr2_4:52322886-52322905 | Msa0334140:intron | 40.0% |
| ! | TGGTTTGGCGACACATATAA+TGG | + | chr2_4:52322975-52322994 | None:intergenic | 40.0% |
| ATTATATGTGTCGCCAAACC+AGG | - | chr2_4:52322974-52322993 | Msa0334140:intron | 40.0% | |
| AGTGTGCACAGAGAACATAA+TGG | + | chr2_4:52323006-52323025 | None:intergenic | 40.0% | |
| CGCTTTGCAGAAGAAGAAAA+AGG | - | chr2_4:52323108-52323127 | Msa0334140:intron | 40.0% | |
| TTGCAGAAGAAGAAAAAGGC+TGG | - | chr2_4:52323112-52323131 | Msa0334140:intron | 40.0% | |
| AGAAGGTCAAAGCAAAGACA+AGG | - | chr2_4:52323146-52323165 | Msa0334140:intron | 40.0% | |
| AAGGAGGAAAATGCATGAGA+TGG | - | chr2_4:52323165-52323184 | Msa0334140:intron | 40.0% | |
| CACATATCTGCAAACTCATC+AGG | + | chr2_4:52323205-52323224 | None:intergenic | 40.0% | |
| CTGATGAGTTTGCAGATATG+TGG | - | chr2_4:52323203-52323222 | Msa0334140:intron | 40.0% | |
| CACCATTCGTGTCGAATATA+GGG | + | chr2_4:52323287-52323306 | None:intergenic | 40.0% | |
| TCACCATTCGTGTCGAATAT+AGG | + | chr2_4:52323288-52323307 | None:intergenic | 40.0% | |
| ! | TCGACACGAATGGTGATTTT+TGG | - | chr2_4:52323292-52323311 | Msa0334140:intron | 40.0% |
| !!! | CACGAATGGTGATTTTTGGT+TGG | - | chr2_4:52323296-52323315 | Msa0334140:intron | 40.0% |
| TTGGCAGTCCATTCTTTGTA+GGG | - | chr2_4:52323315-52323334 | Msa0334140:intron | 40.0% | |
| CAAAAAGCCCCTACAAAGAA+TGG | + | chr2_4:52323326-52323345 | None:intergenic | 40.0% | |
| TACAGTATAAGTAAGGCGGT+AGG | + | chr2_4:52323526-52323545 | None:intergenic | 40.0% | |
| GTAGTAGTGTTTAGCAGAGA+AGG | - | chr2_4:52323588-52323607 | Msa0334140:five_prime_UTR | 40.0% | |
| TTTAACGGAAATGCCCGCAT+AGG | + | chr2_4:52318074-52318093 | None:intergenic | 45.0% | |
| GGAAGTGAAGAAGCTAACCT+AGG | + | chr2_4:52318163-52318182 | None:intergenic | 45.0% | |
| GAAGTCGAGGTTAAGGAGAA+TGG | - | chr2_4:52319748-52319767 | Msa0334140:intron | 45.0% | |
| ATGGTGCTTCACCTGTATTC+AGG | - | chr2_4:52319767-52319786 | Msa0334140:intron | 45.0% | |
| CTGCACATAAAGGGCTTGAT+TGG | + | chr2_4:52320186-52320205 | None:intergenic | 45.0% | |
| CCGACATTTGATGTTGAACC+TGG | - | chr2_4:52320325-52320344 | Msa0334140:intron | 45.0% | |
| GCTTCTGCCTCATTGCAAAA+AGG | - | chr2_4:52320352-52320371 | Msa0334140:intron | 45.0% | |
| GCAAGACACAAGAGTCAGAT+GGG | + | chr2_4:52320672-52320691 | None:intergenic | 45.0% | |
| TGCAAGACACAAGAGTCAGA+TGG | + | chr2_4:52320673-52320692 | None:intergenic | 45.0% | |
| ATTTAACAGACGGACCGTTG+GGG | + | chr2_4:52320978-52320997 | None:intergenic | 45.0% | |
| ! | CTTTTCAGTGCACACAATGG+AGG | - | chr2_4:52321189-52321208 | Msa0334140:intron | 45.0% |
| AACTCCGAAGGACCATAGAA+AGG | - | chr2_4:52321809-52321828 | Msa0334140:intron | 45.0% | |
| ! | GGAAAGGCTTAGCCTTTCTA+TGG | + | chr2_4:52321824-52321843 | None:intergenic | 45.0% |
| GCCTATTGTAAAGGAACCCA+AGG | + | chr2_4:52322196-52322215 | None:intergenic | 45.0% | |
| ! | AATCATACGTGGTAGCGTCA+TGG | + | chr2_4:52322497-52322516 | None:intergenic | 45.0% |
| ACGCTACCACGTATGATTGA+TGG | - | chr2_4:52322499-52322518 | Msa0334140:intron | 45.0% | |
| ATTGGATTCAAGCAGAACCG+TGG | + | chr2_4:52322906-52322925 | None:intergenic | 45.0% | |
| !! | ATATTCGGTGGCAGTTTTGG+AGG | - | chr2_4:52322930-52322949 | Msa0334140:intron | 45.0% |
| GGCTGGAACATTTGCAAAGA+AGG | - | chr2_4:52323129-52323148 | Msa0334140:intron | 45.0% | |
| AGGTCAAAGCAAAGACAAGG+AGG | - | chr2_4:52323149-52323168 | Msa0334140:intron | 45.0% | |
| CACCCTATATTCGACACGAA+TGG | - | chr2_4:52323282-52323301 | Msa0334140:intron | 45.0% | |
| GTTGGCAGTCCATTCTTTGT+AGG | - | chr2_4:52323314-52323333 | Msa0334140:intron | 45.0% | |
| TGGCAGTCCATTCTTTGTAG+GGG | - | chr2_4:52323316-52323335 | Msa0334140:intron | 45.0% | |
| GCATAAGCCAAGTCAATCTC+AGG | + | chr2_4:52323627-52323646 | None:intergenic | 45.0% | |
| GCAGAGTTAAATCGGGTCGT+GGG | + | chr2_4:52318108-52318127 | None:intergenic | 50.0% | |
| TGCAGAGTTAAATCGGGTCG+TGG | + | chr2_4:52318109-52318128 | None:intergenic | 50.0% | |
| CAGATCCTCGAAAGAACCCT+AGG | - | chr2_4:52318143-52318162 | Msa0334140:three_prime_UTR | 50.0% | |
| GCTAACCTAGGGTTCTTTCG+AGG | + | chr2_4:52318151-52318170 | None:intergenic | 50.0% | |
| ACTGCACTCTCTCTGGTGTT+GGG | - | chr2_4:52318188-52318207 | Msa0334140:three_prime_UTR | 50.0% | |
| ! | TCTGAGATCACCGTCACAAC+AGG | - | chr2_4:52318214-52318233 | Msa0334140:three_prime_UTR | 50.0% |
| AAGCGAAAAGGCTGAAGCTG+TGG | - | chr2_4:52319642-52319661 | Msa0334140:intron | 50.0% | |
| ! | AGACCAGTGAGGACCCTTTT+GGG | - | chr2_4:52319697-52319716 | Msa0334140:intron | 50.0% |
| AATGAGGCAGAAGCGATACC+AGG | + | chr2_4:52320346-52320365 | None:intergenic | 50.0% | |
| CTCAACAAGCTCGTTCAAGG+TGG | + | chr2_4:52320411-52320430 | None:intergenic | 50.0% | |
| GAGCTCAACAAGCTCGTTCA+AGG | + | chr2_4:52320414-52320433 | None:intergenic | 50.0% | |
| TGGATGGCAAAATGCCCCAA+CGG | - | chr2_4:52320961-52320980 | Msa0334140:intron | 50.0% | |
| GAGTCAGACAAATTACCCCG+AGG | - | chr2_4:52322762-52322781 | Msa0334140:intron | 50.0% | |
| ! | CCAGAGAGAGTGCAGTGGAA+TGG | + | chr2_4:52318184-52318203 | None:intergenic | 55.0% |
| CCATTCCACTGCACTCTCTC+TGG | - | chr2_4:52318181-52318200 | Msa0334140:three_prime_UTR | 55.0% | |
| ! | CAACACCAGAGAGAGTGCAG+TGG | + | chr2_4:52318189-52318208 | None:intergenic | 55.0% |
| CACTGCACTCTCTCTGGTGT+TGG | - | chr2_4:52318187-52318206 | Msa0334140:three_prime_UTR | 55.0% | |
| ! | CTGCACTCTCTCTGGTGTTG+GGG | - | chr2_4:52318189-52318208 | Msa0334140:three_prime_UTR | 55.0% |
| AGCTGTGGCTGTGCCCAAAA+AGG | - | chr2_4:52319657-52319676 | Msa0334140:intron | 55.0% | |
| TTGCTCCAGAGAGACCAGTG+AGG | - | chr2_4:52319686-52319705 | Msa0334140:intron | 55.0% | |
| ! | GAGACCAGTGAGGACCCTTT+TGG | - | chr2_4:52319696-52319715 | Msa0334140:intron | 55.0% |
| CATCCCAAAAGGGTCCTCAC+TGG | + | chr2_4:52319703-52319722 | None:intergenic | 55.0% | |
| !! | CAGTGAGGACCCTTTTGGGA+TGG | - | chr2_4:52319701-52319720 | Msa0334140:intron | 55.0% |
| !!! | GAGGACCCTTTTGGGATGGA+AGG | - | chr2_4:52319705-52319724 | Msa0334140:intron | 55.0% |
| ! | AAAGAGGGCGGGAGCCTTTT+AGG | + | chr2_4:52321237-52321256 | None:intergenic | 55.0% |
| GCATGAGATGGCCAATCCTC+TGG | - | chr2_4:52323177-52323196 | Msa0334140:intron | 55.0% | |
| CTCATCAGGCTCCAGAGGAT+TGG | + | chr2_4:52323191-52323210 | None:intergenic | 55.0% | |
| GCAAACTCATCAGGCTCCAG+AGG | + | chr2_4:52323196-52323215 | None:intergenic | 55.0% | |
| ! | AGGGTCCTCACTGGTCTCTC+TGG | + | chr2_4:52319694-52319713 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_4 | gene | 52318044 | 52323695 | 52318044 | ID=Msa0334140;Name=Msa0334140 |
| chr2_4 | mRNA | 52318044 | 52323695 | 52318044 | ID=Msa0334140-mRNA-1;Parent=Msa0334140;Name=Msa0334140-mRNA-1;_AED=0.17;_eAED=0.17;_QI=201|1|1|1|0.7|0.63|11|409|319 |
| chr2_4 | exon | 52318044 | 52318262 | 52318044 | ID=Msa0334140-mRNA-1:exon:15747;Parent=Msa0334140-mRNA-1 |
| chr2_4 | exon | 52318295 | 52318370 | 52318295 | ID=Msa0334140-mRNA-1:exon:15746;Parent=Msa0334140-mRNA-1 |
| chr2_4 | exon | 52318391 | 52318636 | 52318391 | ID=Msa0334140-mRNA-1:exon:15745;Parent=Msa0334140-mRNA-1 |
| chr2_4 | exon | 52318744 | 52318842 | 52318744 | ID=Msa0334140-mRNA-1:exon:15744;Parent=Msa0334140-mRNA-1 |
| chr2_4 | exon | 52318927 | 52318995 | 52318927 | ID=Msa0334140-mRNA-1:exon:15743;Parent=Msa0334140-mRNA-1 |
| chr2_4 | exon | 52319837 | 52319938 | 52319837 | ID=Msa0334140-mRNA-1:exon:15742;Parent=Msa0334140-mRNA-1 |
| chr2_4 | exon | 52320418 | 52320542 | 52320418 | ID=Msa0334140-mRNA-1:exon:15741;Parent=Msa0334140-mRNA-1 |
| chr2_4 | exon | 52320727 | 52320805 | 52320727 | ID=Msa0334140-mRNA-1:exon:15740;Parent=Msa0334140-mRNA-1 |
| chr2_4 | exon | 52321276 | 52321417 | 52321276 | ID=Msa0334140-mRNA-1:exon:15739;Parent=Msa0334140-mRNA-1 |
| chr2_4 | exon | 52321903 | 52322123 | 52321903 | ID=Msa0334140-mRNA-1:exon:15738;Parent=Msa0334140-mRNA-1 |
| chr2_4 | exon | 52323504 | 52323695 | 52323504 | ID=Msa0334140-mRNA-1:exon:15737;Parent=Msa0334140-mRNA-1 |
| chr2_4 | five_prime_UTR | 52323504 | 52323695 | 52323504 | ID=Msa0334140-mRNA-1:five_prime_utr;Parent=Msa0334140-mRNA-1 |
| chr2_4 | five_prime_UTR | 52322115 | 52322123 | 52322115 | ID=Msa0334140-mRNA-1:five_prime_utr;Parent=Msa0334140-mRNA-1 |
| chr2_4 | CDS | 52321903 | 52322114 | 52321903 | ID=Msa0334140-mRNA-1:cds;Parent=Msa0334140-mRNA-1 |
| chr2_4 | CDS | 52321276 | 52321417 | 52321276 | ID=Msa0334140-mRNA-1:cds;Parent=Msa0334140-mRNA-1 |
| chr2_4 | CDS | 52320727 | 52320805 | 52320727 | ID=Msa0334140-mRNA-1:cds;Parent=Msa0334140-mRNA-1 |
| chr2_4 | CDS | 52320418 | 52320542 | 52320418 | ID=Msa0334140-mRNA-1:cds;Parent=Msa0334140-mRNA-1 |
| chr2_4 | CDS | 52319837 | 52319938 | 52319837 | ID=Msa0334140-mRNA-1:cds;Parent=Msa0334140-mRNA-1 |
| chr2_4 | CDS | 52318927 | 52318995 | 52318927 | ID=Msa0334140-mRNA-1:cds;Parent=Msa0334140-mRNA-1 |
| chr2_4 | CDS | 52318744 | 52318842 | 52318744 | ID=Msa0334140-mRNA-1:cds;Parent=Msa0334140-mRNA-1 |
| chr2_4 | CDS | 52318505 | 52318636 | 52318505 | ID=Msa0334140-mRNA-1:cds;Parent=Msa0334140-mRNA-1 |
| chr2_4 | three_prime_UTR | 52318391 | 52318504 | 52318391 | ID=Msa0334140-mRNA-1:three_prime_utr;Parent=Msa0334140-mRNA-1 |
| chr2_4 | three_prime_UTR | 52318295 | 52318370 | 52318295 | ID=Msa0334140-mRNA-1:three_prime_utr;Parent=Msa0334140-mRNA-1 |
| chr2_4 | three_prime_UTR | 52318044 | 52318262 | 52318044 | ID=Msa0334140-mRNA-1:three_prime_utr;Parent=Msa0334140-mRNA-1 |
| Gene Sequence |
| Protein sequence |
