AlfalfaGEDB | Msa0334140

M. sativa cultivar zhongmu-4 / Msa0334140

KEGG: K14820
GO: GO:0000027 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016072 GO:0022607 GO:0022613 GO:0022618 GO:0031974 GO:0031981 GO:0034470 GO:0034622 GO:0034641 GO:0034660 GO:0042254 GO:0042255 GO:0042273 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0065003 GO:0070013 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363
PFAM: PF04427.21

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0334140	XP_013465818.1	98.119	319	4	1	1	319	1	317	0.0	646

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0334140	sp\|Q9LE16\|BRX11_ARATH	79.062	320	60	3	1	319	1	314	0.0	523

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0191450	Msa0334140	0.806498	7.988459e-50	-8.615850e-47
Msa0216640	Msa0334140	0.843494	1.354103e-58	-8.615850e-47
Msa0295880	Msa0334140	0.851767	7.161660e-61	-8.615850e-47
Msa0334140	Msa0656410	0.804520	2.076838e-49	-8.615850e-47
Msa0334140	Msa0822580	0.810493	1.121396e-50	-8.615850e-47
Msa0334140	Msa1218170	0.836551	8.755540e-57	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0334140	MtrunA17_Chr1g0149671	98.119	319	4	1	1	319	1	317	0.0	646
Msa0334140	MtrunA17_Chr7g0242911	97.179	319	5	1	1	319	1	315	0.0	638

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0334140	AT3G15460.1	79.062	320	60	3	1	319	1	314	0.0	523
Msa0334140	AT1G52930.1	78.125	320	67	2	1	319	1	318	0.0	504

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Find 112 sgRNAs with CRISPR-Local

Find 311 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGATCTTTATCTCTGGA+TGG	0.569362	2_4:-52320772	Msa0334140:CDS
AAAAGATTAATGGGCCTATG+CGG	0.609738	2_4:-52323660	Msa0334140:five_prime_UTR
AAAATATTCGGTGGCAGTTT+TGG	0.276214	2_4:-52318790	Msa0334140:CDS
AAAGATTAATGGGCCTATGC+GGG	0.533247	2_4:-52323659	Msa0334140:five_prime_UTR
AAATAAGCTGGTTATGTTCA+AGG	0.453360	2_4:+52318070	None:intergenic
AAATTTAACAGACGGACCGT+TGG	0.547683	2_4:+52320740	None:intergenic
AACTCCGAAGGACCATAGAA+AGG	0.592135	2_4:-52319908	Msa0334140:CDS
AAGCGAAAAGGCTGAAGCTG+TGG	0.609947	2_4:-52322075	Msa0334140:CDS
AAGGAGGAAAATGCATGAGA+TGG	0.589573	2_4:-52318552	Msa0334140:CDS
AATAAGCTGGTTATGTTCAA+GGG	0.536671	2_4:+52318071	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TACATCTCAAATCATTTCAG+CGG	-	chr2_4:52318789-52318808	Msa0334140:CDS	30.0%
TTAATAACACTGGATATAGG+TGG	-	chr2_4:52318971-52318990	Msa0334140:CDS	30.0%
TAATAACACTGGATATAGGT+GGG	-	chr2_4:52318972-52318991	Msa0334140:CDS	30.0%
ATAGGTGGGTGTTAAATTAT+AGG	-	chr2_4:52318986-52319005	Msa0334140:intron	30.0%
TGTCTGATTATCAATTGTTC+AGG	-	chr2_4:52319079-52319098	Msa0334140:intron	30.0%
TAAGCTGGTTATCTAAACAA+CGG	+	chr2_4:52319218-52319237	None:intergenic	30.0%
GAGACTATTTGAAAGAACTT+AGG	+	chr2_4:52319385-52319404	None:intergenic	30.0%
TAAAAAGTCACACACATGAT+TGG	+	chr2_4:52319499-52319518	None:intergenic	30.0%
GATTTGTAGCCAAATAACAT+GGG	-	chr2_4:52319607-52319626	Msa0334140:intron	30.0%
ATTTGTAGCCAAATAACATG+GGG	-	chr2_4:52319608-52319627	Msa0334140:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2_4	gene	52318044	52323695	52318044	ID=Msa0334140;Name=Msa0334140
chr2_4	mRNA	52318044	52323695	52318044	ID=Msa0334140-mRNA-1;Parent=Msa0334140;Name=Msa0334140-mRNA-1;_AED=0.17;_eAED=0.17;_QI=201\|1\|1\|1\|0.7\|0.63\|11\|409\|319
chr2_4	exon	52318044	52318262	52318044	ID=Msa0334140-mRNA-1:exon:15747;Parent=Msa0334140-mRNA-1
chr2_4	exon	52318295	52318370	52318295	ID=Msa0334140-mRNA-1:exon:15746;Parent=Msa0334140-mRNA-1
chr2_4	exon	52318391	52318636	52318391	ID=Msa0334140-mRNA-1:exon:15745;Parent=Msa0334140-mRNA-1
chr2_4	exon	52318744	52318842	52318744	ID=Msa0334140-mRNA-1:exon:15744;Parent=Msa0334140-mRNA-1
chr2_4	exon	52318927	52318995	52318927	ID=Msa0334140-mRNA-1:exon:15743;Parent=Msa0334140-mRNA-1
chr2_4	exon	52319837	52319938	52319837	ID=Msa0334140-mRNA-1:exon:15742;Parent=Msa0334140-mRNA-1
chr2_4	exon	52320418	52320542	52320418	ID=Msa0334140-mRNA-1:exon:15741;Parent=Msa0334140-mRNA-1
chr2_4	exon	52320727	52320805	52320727	ID=Msa0334140-mRNA-1:exon:15740;Parent=Msa0334140-mRNA-1
chr2_4	exon	52321276	52321417	52321276	ID=Msa0334140-mRNA-1:exon:15739;Parent=Msa0334140-mRNA-1
chr2_4	exon	52321903	52322123	52321903	ID=Msa0334140-mRNA-1:exon:15738;Parent=Msa0334140-mRNA-1
chr2_4	exon	52323504	52323695	52323504	ID=Msa0334140-mRNA-1:exon:15737;Parent=Msa0334140-mRNA-1
chr2_4	five_prime_UTR	52323504	52323695	52323504	ID=Msa0334140-mRNA-1:five_prime_utr;Parent=Msa0334140-mRNA-1
chr2_4	five_prime_UTR	52322115	52322123	52322115	ID=Msa0334140-mRNA-1:five_prime_utr;Parent=Msa0334140-mRNA-1
chr2_4	CDS	52321903	52322114	52321903	ID=Msa0334140-mRNA-1:cds;Parent=Msa0334140-mRNA-1
chr2_4	CDS	52321276	52321417	52321276	ID=Msa0334140-mRNA-1:cds;Parent=Msa0334140-mRNA-1
chr2_4	CDS	52320727	52320805	52320727	ID=Msa0334140-mRNA-1:cds;Parent=Msa0334140-mRNA-1
chr2_4	CDS	52320418	52320542	52320418	ID=Msa0334140-mRNA-1:cds;Parent=Msa0334140-mRNA-1
chr2_4	CDS	52319837	52319938	52319837	ID=Msa0334140-mRNA-1:cds;Parent=Msa0334140-mRNA-1
chr2_4	CDS	52318927	52318995	52318927	ID=Msa0334140-mRNA-1:cds;Parent=Msa0334140-mRNA-1
chr2_4	CDS	52318744	52318842	52318744	ID=Msa0334140-mRNA-1:cds;Parent=Msa0334140-mRNA-1
chr2_4	CDS	52318505	52318636	52318505	ID=Msa0334140-mRNA-1:cds;Parent=Msa0334140-mRNA-1
chr2_4	three_prime_UTR	52318391	52318504	52318391	ID=Msa0334140-mRNA-1:three_prime_utr;Parent=Msa0334140-mRNA-1
chr2_4	three_prime_UTR	52318295	52318370	52318295	ID=Msa0334140-mRNA-1:three_prime_utr;Parent=Msa0334140-mRNA-1
chr2_4	three_prime_UTR	52318044	52318262	52318044	ID=Msa0334140-mRNA-1:three_prime_utr;Parent=Msa0334140-mRNA-1

Gene Sequence

>Msa0334140

ATGGGGAAGAGAAAACGAAGCGAAAAGGCTGAAGCTGTGGCTGTGCCCAAAAAGGAAGATGTTGCTCCAGAGAGACCAGTGAGGACCCTTTTGGGATGGAAGGATAAGAATGAAAATGAGAATGAAGTCGAGGTTAAGGAGAATGGTGCTTCACCTGTATTCAGGAACAAAGAGAAAGTTTTGGTTACTTGCTCTAGGCGTATTGTTTATAGGTACCGACATTTGATGTTGAACCTGGTATCGCTTCTGCCTCATTGCAAAAAGGATAACAAGGTTGAATCGAAAGAAACTAAAGGCGCCACCTTGAACGAGCTTGTTGAGCTCAAAAACTGTTCTTCATGTTTATTTTTTGAGTGCAGGAAGGCAAAAGATCTTTATCTCTGGATGGCAAAATGCCCCAACGGTCCGTCTGTTAAATTTTTAGTTAGTGCCGTGCACACAATGGAGGAATTGAAGCTTACTGGGAATCACCTAAAAGGCTCCCGCCCTCTTTTGACATTTTCATCAAATTTTGAAAAAGATGCATACTGGAAACTGTTAAAGGAGATGCTGTTACAGATTTTTGAAACTCCGAAGGACCATAGAAAGGCTAAGCCTTTCCATGACCACGTTTTTGTTTTCTCAATTGTTGATGACCATATATGGTTCCGAAATTACCAGATCTCTGTTCCTCACAATGAGTCAGACAAATTACCCCGAGGAAGCCTTGATAAAATGACATTGATTGAGGTTGGTCCACGGTTCTGCTTGAATCCAATTAAAATATTCGGTGGCAGTTTTGGAGGCCCAACTTTATATGAGAATCCATTATATGTGTCGCCAAACCAGATTCGCGCTTTGCAGAAGAAGAAAAAGGCTGGAACATTTGCAAAGAAGGTCAAAGCAAAGACAAGGAGGAAAATGCATGAGATGGCCAATCCTCTGGAGCCTGATGAGTTTGCAGATATGTGGAAAGATTAA

Protein sequence

>Msa0334140

MGKRKRSEKAEAVAVPKKEDVAPERPVRTLLGWKDKNENENEVEVKENGASPVFRNKEKVLVTCSRRIVYRYRHLMLNLVSLLPHCKKDNKVESKETKGATLNELVELKNCSSCLFFECRKAKDLYLWMAKCPNGPSVKFLVSAVHTMEELKLTGNHLKGSRPLLTFSSNFEKDAYWKLLKEMLLQIFETPKDHRKAKPFHDHVFVFSIVDDHIWFRNYQISVPHNESDKLPRGSLDKMTLIEVGPRFCLNPIKIFGGSFGGPTLYENPLYVSPNQIRALQKKKKAGTFAKKVKAKTRRKMHEMANPLEPDEFADMWKD*