Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0656410 | XP_013446579.1 | 99.149 | 470 | 3 | 1 | 1 | 470 | 1 | 469 | 0.0 | 960 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0656410 | sp|Q9ZUN8|HTD1_ARATH | 70.880 | 443 | 125 | 3 | 29 | 468 | 25 | 466 | 0.0 | 640 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0656410 | A0A072TTT6 | 99.149 | 470 | 3 | 1 | 1 | 470 | 1 | 469 | 0.0 | 960 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0032810 | Msa0656410 | 0.805964 | 1.035180e-49 | -8.615850e-47 |
| Msa0091750 | Msa0656410 | 0.809271 | 2.054620e-50 | -8.615850e-47 |
| Msa0114570 | Msa0656410 | 0.803855 | 2.856361e-49 | -8.615850e-47 |
| Msa0617540 | Msa0656410 | 0.922281 | 1.205501e-88 | -8.615850e-47 |
| Msa0656410 | Msa0705800 | 0.845808 | 3.223156e-59 | -8.615850e-47 |
| Msa0656410 | Msa0709280 | 0.826432 | 2.722075e-54 | -8.615850e-47 |
| Msa0656410 | Msa0712610 | 0.819238 | 1.289922e-52 | -8.615850e-47 |
| Msa0656410 | Msa0729200 | 0.818502 | 1.895318e-52 | -8.615850e-47 |
| Msa0656410 | Msa0766080 | 0.803606 | 3.216988e-49 | -8.615850e-47 |
| Msa0656410 | Msa0769590 | 0.815628 | 8.387853e-52 | -8.615850e-47 |
| Msa0656410 | Msa0781080 | 0.800264 | 1.563533e-48 | -8.615850e-47 |
| Msa0656410 | Msa0806880 | 0.806406 | 8.354718e-50 | -8.615850e-47 |
| Msa0656410 | Msa0827380 | 0.807624 | 4.615721e-50 | -8.615850e-47 |
| Msa0656410 | Msa0876170 | 0.823896 | 1.082027e-53 | -8.615850e-47 |
| Msa0656410 | Msa1085420 | 0.830123 | 3.506357e-55 | -8.615850e-47 |
| Msa0656410 | Msa1094380 | 0.803267 | 3.782605e-49 | -8.615850e-47 |
| Msa0656410 | Msa1126520 | 0.820712 | 5.933489e-53 | -8.615850e-47 |
| Msa0656410 | Msa1177250 | 0.805398 | 1.360632e-49 | -8.615850e-47 |
| Msa0656410 | Msa1195300 | 0.829451 | 5.110564e-55 | -8.615850e-47 |
| Msa0656410 | Msa1218170 | 0.806113 | 9.629793e-50 | -8.615850e-47 |
| Msa0656410 | Msa1235610 | 0.841425 | 4.790627e-58 | -8.615850e-47 |
| Msa0656410 | Msa1332250 | 0.826219 | 3.058654e-54 | -8.615850e-47 |
| Msa0656410 | Msa1356790 | 0.811139 | 8.128914e-51 | -8.615850e-47 |
| Msa0656410 | Msa1369190 | 0.803179 | 3.944927e-49 | -8.615850e-47 |
| Msa0656410 | Msa1393000 | 0.800950 | 1.133109e-48 | -8.615850e-47 |
| Msa0656410 | Msa1403910 | 0.815745 | 7.896083e-52 | -8.615850e-47 |
| Msa0656410 | Msa1406080 | 0.807072 | 6.042102e-50 | -8.615850e-47 |
| Msa0656410 | Msa1413500 | 0.802310 | 5.962367e-49 | -8.615850e-47 |
| Msa0656410 | Msa1418770 | 0.810366 | 1.194445e-50 | -8.615850e-47 |
| Msa0138890 | Msa0656410 | 0.803320 | 3.687290e-49 | -8.615850e-47 |
| Msa0172930 | Msa0656410 | 0.807854 | 4.123494e-50 | -8.615850e-47 |
| Msa0229150 | Msa0656410 | 0.851403 | 9.081756e-61 | -8.615850e-47 |
| Msa0334140 | Msa0656410 | 0.804520 | 2.076838e-49 | -8.615850e-47 |
| Msa0546030 | Msa0656410 | 0.825247 | 5.202057e-54 | -8.615850e-47 |
| Msa0550420 | Msa0656410 | 0.808861 | 2.514922e-50 | -8.615850e-47 |
| Msa0584030 | Msa0656410 | 0.805430 | 1.340110e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0656410 | MtrunA17_Chr8g0377441 | 99.149 | 470 | 3 | 1 | 1 | 470 | 1 | 469 | 0.0 | 960 |
| Msa0656410 | MtrunA17_Chr5g0406931 | 78.925 | 465 | 77 | 7 | 1 | 461 | 1 | 448 | 0.0 | 677 |
| Msa0656410 | MtrunA17_Chr4g0052291 | 28.934 | 394 | 214 | 12 | 53 | 429 | 29 | 373 | 4.31e-34 | 132 |
| Msa0656410 | MtrunA17_Chr2g0299271 | 30.218 | 321 | 182 | 10 | 156 | 451 | 151 | 454 | 6.66e-32 | 127 |
| Msa0656410 | MtrunA17_Chr4g0036951 | 30.100 | 299 | 174 | 9 | 158 | 451 | 109 | 377 | 6.16e-29 | 117 |
| Msa0656410 | MtrunA17_Chr2g0330271 | 27.246 | 334 | 185 | 12 | 156 | 451 | 110 | 423 | 1.33e-25 | 109 |
| Msa0656410 | MtrunA17_Chr2g0283891 | 25.974 | 231 | 144 | 8 | 217 | 433 | 99 | 316 | 2.22e-16 | 80.1 |
| Msa0656410 | MtrunA17_Chr1g0176241 | 33.766 | 154 | 91 | 6 | 237 | 390 | 339 | 481 | 1.35e-12 | 69.7 |
| Msa0656410 | MtrunA17_Chr5g0447911 | 34.127 | 126 | 72 | 3 | 270 | 392 | 250 | 367 | 9.47e-11 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0656410 | AT2G19540.1 | 70.880 | 443 | 125 | 3 | 29 | 468 | 25 | 466 | 0.0 | 640 |
| Msa0656410 | AT5G58230.1 | 31.013 | 316 | 173 | 8 | 127 | 429 | 90 | 373 | 1.07e-35 | 137 |
| Msa0656410 | AT2G16780.1 | 29.114 | 316 | 191 | 8 | 147 | 451 | 92 | 385 | 4.89e-34 | 132 |
| Msa0656410 | AT4G35050.1 | 28.481 | 316 | 193 | 8 | 147 | 451 | 93 | 386 | 1.50e-31 | 125 |
| Msa0656410 | AT2G19520.1 | 28.440 | 327 | 183 | 10 | 156 | 451 | 157 | 463 | 1.03e-27 | 116 |
| Msa0656410 | AT4G29730.1 | 27.950 | 322 | 181 | 10 | 156 | 446 | 137 | 438 | 9.88e-27 | 113 |
| Msa0656410 | AT4G29730.3 | 27.541 | 305 | 171 | 9 | 156 | 430 | 137 | 421 | 4.64e-25 | 107 |
| Msa0656410 | AT4G29730.2 | 27.541 | 305 | 171 | 9 | 156 | 430 | 137 | 421 | 4.64e-25 | 107 |
| Msa0656410 | AT1G29260.1 | 28.108 | 185 | 114 | 6 | 217 | 395 | 98 | 269 | 1.17e-14 | 75.1 |
| Msa0656410 | AT4G34460.4 | 25.824 | 182 | 131 | 3 | 216 | 394 | 141 | 321 | 3.44e-12 | 68.2 |
| Msa0656410 | AT4G34460.1 | 25.824 | 182 | 131 | 3 | 216 | 394 | 146 | 326 | 3.59e-12 | 68.2 |
| Msa0656410 | AT4G34460.3 | 25.824 | 182 | 131 | 3 | 216 | 394 | 146 | 326 | 3.89e-12 | 67.8 |
| Msa0656410 | AT4G34460.2 | 25.824 | 182 | 131 | 3 | 216 | 394 | 84 | 264 | 5.08e-12 | 67.4 |
Find 136 sgRNAs with CRISPR-Local
Find 385 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTAAAGTATCCAATATTTC+TGG | 0.186014 | 4_3:-65690852 | Msa0656410:CDS |
| CAGGAGCGTTTACTTGTTCT+TGG | 0.192683 | 4_3:+65687399 | None:intergenic |
| CAGAATATGGGACCTTTCTT+TGG | 0.220480 | 4_3:-65687462 | Msa0656410:CDS |
| ATATTGGATGGCCTTGTCTT+AGG | 0.248468 | 4_3:-65691917 | Msa0656410:intron |
| AAACCTTCTTGGAATTCTAT+TGG | 0.254653 | 4_3:-65690879 | Msa0656410:CDS |
| CTGCCCAAGATGCACATATA+TGG | 0.270395 | 4_3:+65690545 | None:intergenic |
| GTACAAAAGCAAAATTTCTT+TGG | 0.285637 | 4_3:+65686760 | None:intergenic |
| TGGATAAAAGCATTGCAATA+TGG | 0.287928 | 4_3:-65688523 | Msa0656410:CDS |
| CACACAGTGTATTTCATTAC+AGG | 0.300493 | 4_3:-65691294 | Msa0656410:CDS |
| TGTGTGCCAATGCAGTTCTT+TGG | 0.305295 | 4_3:+65686995 | None:intergenic |
| CTTTGGCATAACTTAGATTC+AGG | 0.310531 | 4_3:+65686777 | None:intergenic |
| TGCAATATGGGATACTCGTT+TGG | 0.310651 | 4_3:-65688510 | Msa0656410:CDS |
| GTGTGCCAATGCAGTTCTTT+GGG | 0.311930 | 4_3:+65686996 | None:intergenic |
| AACCTTCTTGGAATTCTATT+GGG | 0.322573 | 4_3:-65690878 | Msa0656410:CDS |
| GGCGGCGGCGCCACAGGTTC+CGG | 0.327760 | 4_3:-65692030 | Msa0656410:CDS |
| CTGTCAGTATGTCCAGTAAA+AGG | 0.330541 | 4_3:+65688727 | None:intergenic |
| AGTTGGGGAGGCAGATCTTC+AGG | 0.338811 | 4_3:+65687380 | None:intergenic |
| GACTGGAGTCCTCTTGTTCC+AGG | 0.347996 | 4_3:-65688942 | Msa0656410:CDS |
| ATCATCTTCGGCGGCGGCGG+CGG | 0.352465 | 4_3:-65692045 | Msa0656410:CDS |
| GCAATATGGGATACTCGTTT+GGG | 0.354043 | 4_3:-65688509 | Msa0656410:CDS |
| TGCCGGTGGTCCTACTTTGC+AGG | 0.355683 | 4_3:-65690727 | Msa0656410:intron |
| ACGTCTCTTCCCAGAAATAT+TGG | 0.357236 | 4_3:+65690842 | None:intergenic |
| CCAAGGAGTTGATGCAGTTC+AGG | 0.373931 | 4_3:-65689009 | Msa0656410:CDS |
| CCCAGGCTGAGAAACCTTCT+TGG | 0.379293 | 4_3:-65690890 | Msa0656410:intron |
| CATTGGCACACACAGATTCC+TGG | 0.384701 | 4_3:-65686984 | Msa0656410:CDS |
| CTCACGAAGGTTGTATTAAC+CGG | 0.388862 | 4_3:-65690591 | Msa0656410:CDS |
| TGAAACTGATGACTCTGAAA+TGG | 0.392830 | 4_3:-65690802 | Msa0656410:CDS |
| ATCAACTCCTTGGACACCTT+CGG | 0.400128 | 4_3:+65689019 | None:intergenic |
| CCTGGTGAATAAACAATAGT+TGG | 0.407860 | 4_3:+65687363 | None:intergenic |
| TCGTGATCTCAGACTGCTTA+AGG | 0.409527 | 4_3:-65688285 | Msa0656410:intron |
| GAGTCATCAGTTTCACGTTT+AGG | 0.409980 | 4_3:+65690810 | None:intergenic |
| GGATAAAAGCATTGCAATAT+GGG | 0.421297 | 4_3:-65688522 | Msa0656410:CDS |
| ATGGGACCTTTCTTTGGAAA+AGG | 0.423598 | 4_3:-65687456 | Msa0656410:CDS |
| TGCCCAAGATGCACATATAT+GGG | 0.425064 | 4_3:+65690546 | None:intergenic |
| CTGGTGAATAAACAATAGTT+GGG | 0.426771 | 4_3:+65687364 | None:intergenic |
| TGTGCATCTTGGGCAGAATC+TGG | 0.430129 | 4_3:-65690538 | Msa0656410:CDS |
| GGCTAGTTGTATGTTGGCGT+CGG | 0.431422 | 4_3:-65688333 | Msa0656410:CDS |
| TCCCCATATATGTGCATCTT+GGG | 0.431645 | 4_3:-65690548 | Msa0656410:CDS |
| AGGAGCGTTTACTTGTTCTT+GGG | 0.432127 | 4_3:+65687400 | None:intergenic |
| TTTGTGCCATGGAGCGTATC+CGG | 0.432906 | 4_3:+65690572 | None:intergenic |
| GCAGTACATACTATCATTCC+AGG | 0.440018 | 4_3:+65686966 | None:intergenic |
| TGAATCATCTTCGGCGGCGG+CGG | 0.443523 | 4_3:-65692048 | Msa0656410:CDS |
| TTAAAGTATCCAATATTTCT+GGG | 0.447355 | 4_3:-65690851 | Msa0656410:CDS |
| TCCACACGAAGCTTCTTCAT+TGG | 0.452856 | 4_3:-65687721 | Msa0656410:CDS |
| ATCCCCATATATGTGCATCT+TGG | 0.460743 | 4_3:-65690549 | Msa0656410:CDS |
| AACTAGGTTACGCAGATTGT+AGG | 0.460907 | 4_3:+65692418 | None:intergenic |
| CCTGAACTGCATCAACTCCT+TGG | 0.464940 | 4_3:+65689009 | None:intergenic |
| CCAACTATTGTTTATTCACC+AGG | 0.472482 | 4_3:-65687363 | Msa0656410:intron |
| TGGATGTGATTGGATGCTTA+TGG | 0.478480 | 4_3:+65687754 | None:intergenic |
| TTTGGAAAAGGACGAGGAAG+AGG | 0.483191 | 4_3:-65687444 | Msa0656410:CDS |
| GCTAGTTGTATGTTGGCGTC+GGG | 0.490510 | 4_3:-65688332 | Msa0656410:CDS |
| AAGGTGCTTTGAATATTTGA+AGG | 0.491981 | 4_3:+65686918 | None:intergenic |
| TTGGCGTCGGGTAGTGATGA+TGG | 0.493276 | 4_3:-65688320 | Msa0656410:CDS |
| TACAAGGCAGTATCTGCTAT+AGG | 0.495721 | 4_3:-65686844 | Msa0656410:three_prime_UTR |
| ATGAAGGCTATGCTATAGAC+TGG | 0.496426 | 4_3:-65688959 | Msa0656410:CDS |
| AAACTTAGCACAAGCAGATA+AGG | 0.498037 | 4_3:+65686697 | None:intergenic |
| CCGGTAAAAGTGTGGCAACC+TGG | 0.501960 | 4_3:-65692011 | Msa0656410:CDS |
| ACCTGTGAGTGGCTTGTTGT+TGG | 0.504353 | 4_3:+65692378 | None:intergenic |
| TGAATGTATTGTCATGGAAC+AGG | 0.507712 | 4_3:-65688445 | Msa0656410:intron |
| AATCCTTTGCCACAGAATAT+GGG | 0.508159 | 4_3:-65687474 | Msa0656410:intron |
| CTCCACTCAATGGATGTGAT+TGG | 0.514101 | 4_3:+65687744 | None:intergenic |
| GTTCCAGGGAGGCTTGTATC+CGG | 0.514187 | 4_3:-65688927 | Msa0656410:intron |
| ATAGCAGATACTGCCTTGTA+AGG | 0.517707 | 4_3:+65686847 | None:intergenic |
| GCAGATAAGGAAATTAATAG+AGG | 0.518815 | 4_3:+65686710 | None:intergenic |
| GGCAGAATCTGGTCATGTGC+AGG | 0.520350 | 4_3:-65690527 | Msa0656410:intron |
| CCTTTCTTTGGAAAAGGACG+AGG | 0.522730 | 4_3:-65687450 | Msa0656410:CDS |
| TTCTGGGAAGAGACGTGAGC+TGG | 0.529788 | 4_3:-65690835 | Msa0656410:CDS |
| GAAACGGAGTGAATCATCTT+CGG | 0.530490 | 4_3:-65692057 | Msa0656410:CDS |
| GACGAAGAAGAAGGTGGTGC+CGG | 0.530693 | 4_3:-65690744 | Msa0656410:CDS |
| CGGCATAAAACATCGTCAAA+AGG | 0.531323 | 4_3:-65692204 | Msa0656410:CDS |
| GATAGTGAAGACGAAGAAGA+AGG | 0.533242 | 4_3:-65690753 | Msa0656410:CDS |
| ACTAGGTTACGCAGATTGTA+GGG | 0.533840 | 4_3:+65692419 | None:intergenic |
| GAGGGTGTTACCTGCAAAGT+AGG | 0.537218 | 4_3:+65690717 | None:intergenic |
| GCAACCTGGTGTGGATAAGT+TGG | 0.537432 | 4_3:-65691997 | Msa0656410:CDS |
| ACAGAAACCGAAGGTGTCCA+AGG | 0.538288 | 4_3:-65689026 | Msa0656410:CDS |
| CAATAATAGTATTTATCTGT+GGG | 0.539902 | 4_3:-65688788 | Msa0656410:CDS |
| TTACCGGATACAAGCCTCCC+TGG | 0.543277 | 4_3:+65688924 | None:intergenic |
| AAATTTAAGCACAAAGATGA+AGG | 0.546613 | 4_3:-65688975 | Msa0656410:CDS |
| TTCGTGTGGACTCCACTCAA+TGG | 0.553277 | 4_3:+65687734 | None:intergenic |
| GAGTGAATCATCTTCGGCGG+CGG | 0.557113 | 4_3:-65692051 | Msa0656410:CDS |
| GCAATAATAGTATTTATCTG+TGG | 0.558281 | 4_3:-65688789 | Msa0656410:CDS |
| ATAGTATGTACTGCAGCAGA+TGG | 0.561830 | 4_3:-65686957 | Msa0656410:CDS |
| TTCCATGTTGCAGCAGATGT+AGG | 0.568203 | 4_3:+65688763 | None:intergenic |
| TGGAGAGAATTGTAAGCAGA+AGG | 0.568749 | 4_3:+65691948 | None:intergenic |
| ACAAGCCTCCCTGGAACAAG+AGG | 0.572225 | 4_3:+65688933 | None:intergenic |
| ATCCCAATAGAATTCCAAGA+AGG | 0.572795 | 4_3:+65690876 | None:intergenic |
| TGTGCTTGAAAAGACGCAGC+TGG | 0.573745 | 4_3:+65688479 | None:intergenic |
| AAGACCCCAAAGAACTGCAT+TGG | 0.573867 | 4_3:-65687001 | Msa0656410:CDS |
| TAGGTTGGCTAGTTGTATGT+TGG | 0.574859 | 4_3:-65688339 | Msa0656410:CDS |
| GCCATCCAATATGAAAAGCA+TGG | 0.576629 | 4_3:+65691928 | None:intergenic |
| GGCATAACTTAGATTCAGGA+TGG | 0.577023 | 4_3:+65686781 | None:intergenic |
| TTTGAATATTTGAAGGCATG+AGG | 0.577378 | 4_3:+65686925 | None:intergenic |
| ACCAACAACAAGCCACTCAC+AGG | 0.580280 | 4_3:-65692379 | Msa0656410:intron |
| TCTTCCAACTTATCCACACC+AGG | 0.583170 | 4_3:+65691993 | None:intergenic |
| TGTGCCAATGCAGTTCTTTG+GGG | 0.585321 | 4_3:+65686997 | None:intergenic |
| AGCCTACATCTGCTGCAACA+TGG | 0.586634 | 4_3:-65688765 | Msa0656410:CDS |
| TTCTGTTCGAACTAAACCCA+TGG | 0.588801 | 4_3:+65691323 | None:intergenic |
| AAAAGTGTGGCAACCTGGTG+TGG | 0.591077 | 4_3:-65692006 | Msa0656410:CDS |
| GTATTTCATTACAGGGACAC+AGG | 0.601861 | 4_3:-65691286 | Msa0656410:intron |
| CTGATGTGAATGTATTGTCA+TGG | 0.604527 | 4_3:-65688451 | Msa0656410:CDS |
| TACCTGCAAAGTAGGACCAC+CGG | 0.605560 | 4_3:+65690725 | None:intergenic |
| TTACGTAAGTTGATTATCAG+CGG | 0.605575 | 4_3:+65687689 | None:intergenic |
| TGGCGTCGGGTAGTGATGAT+GGG | 0.605656 | 4_3:-65688319 | Msa0656410:CDS |
| TATTAACCGGATACGCTCCA+TGG | 0.608736 | 4_3:-65690578 | Msa0656410:CDS |
| ACACAGTGTATTTCATTACA+GGG | 0.609707 | 4_3:-65691293 | Msa0656410:CDS |
| GGAAAAGGACGAGGAAGAGG+AGG | 0.612345 | 4_3:-65687441 | Msa0656410:CDS |
| GAAGAAGAAGGTGGTGCCGG+TGG | 0.612395 | 4_3:-65690741 | Msa0656410:CDS |
| GACGAAGAAGAGAAAGAACT+AGG | 0.614313 | 4_3:+65692402 | None:intergenic |
| ACTGATGACTCTGAAATGGA+TGG | 0.615606 | 4_3:-65690798 | Msa0656410:CDS |
| CACAGGTTCCGGTAAAAGTG+TGG | 0.622299 | 4_3:-65692019 | Msa0656410:CDS |
| ACCTTTGACAAACCTGTGAG+TGG | 0.623381 | 4_3:+65692367 | None:intergenic |
| ACTGGAGTCCTCTTGTTCCA+GGG | 0.624385 | 4_3:-65688941 | Msa0656410:CDS |
| GCAGATACTGCCTTGTAAGG+TGG | 0.628414 | 4_3:+65686850 | None:intergenic |
| GTATTCAAAATGCGCTACCA+CGG | 0.630470 | 4_3:+65687776 | None:intergenic |
| TGAATAAACAATAGTTGGGG+AGG | 0.631441 | 4_3:+65687368 | None:intergenic |
| AAAGGCAAAGAGCAAGAACA+AGG | 0.634436 | 4_3:-65692186 | Msa0656410:intron |
| ATCCAATCACATCCATTGAG+TGG | 0.634447 | 4_3:-65687746 | Msa0656410:CDS |
| GTGTATCATGCAGCTTCTGA+TGG | 0.635224 | 4_3:+65686894 | None:intergenic |
| GGAGTCCTCTTGTTCCAGGG+AGG | 0.636093 | 4_3:-65688938 | Msa0656410:CDS |
| TCATGCAGCTTCTGATGGCA+AGG | 0.636729 | 4_3:+65686899 | None:intergenic |
| TGACTCTGAAATGGATGGTG+AGG | 0.638725 | 4_3:-65690793 | Msa0656410:CDS |
| GCCAATGAAGAAGCTTCGTG+TGG | 0.638913 | 4_3:+65687720 | None:intergenic |
| TGAATAGGAAGGAGATTCCG+TGG | 0.641695 | 4_3:-65687793 | Msa0656410:intron |
| TGGTGAGGATAGTGATAGCG+AGG | 0.651927 | 4_3:-65690778 | Msa0656410:CDS |
| GTAATGAAATACACTGTGTG+TGG | 0.652047 | 4_3:+65691297 | None:intergenic |
| GCCCAAGATGCACATATATG+GGG | 0.653392 | 4_3:+65690547 | None:intergenic |
| TTCACACCTACAGTTGCGGA+AGG | 0.659965 | 4_3:-65690617 | Msa0656410:intron |
| AACTAATTGAAGATGACTCG+CGG | 0.660356 | 4_3:-65692224 | Msa0656410:exon |
| TTTGTTCTTTACCTAAGACA+AGG | 0.662595 | 4_3:+65691906 | None:intergenic |
| TGGTGAATAAACAATAGTTG+GGG | 0.666731 | 4_3:+65687365 | None:intergenic |
| AGTGAAGACGAAGAAGAAGG+TGG | 0.675905 | 4_3:-65690750 | Msa0656410:CDS |
| ACGGAGTGAATCATCTTCGG+CGG | 0.677615 | 4_3:-65692054 | Msa0656410:CDS |
| CAATATGGGATACTCGTTTG+GGG | 0.693736 | 4_3:-65688508 | Msa0656410:CDS |
| TATGGGATACTCGTTTGGGG+AGG | 0.701784 | 4_3:-65688505 | Msa0656410:CDS |
| CTAGCAGAGACAGAAACCGA+AGG | 0.703665 | 4_3:-65689035 | Msa0656410:CDS |
| TTGCGGAAGGTAACTCACGA+AGG | 0.747550 | 4_3:-65690604 | Msa0656410:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATTAAATATATCTAATCA+AGG | + | chr4_3:65691914-65691933 | None:intergenic | 10.0% |
| !!! | TTTTGAAAAAATTGAAGAAA+CGG | - | chr4_3:65686900-65686919 | Msa0656410:CDS | 15.0% |
| !!! | TCATGATTTATTTTTTGTTT+GGG | - | chr4_3:65687596-65687615 | Msa0656410:intron | 15.0% |
| !! | ATTTCAAAGATTAACTTATA+AGG | + | chr4_3:65689330-65689349 | None:intergenic | 15.0% |
| !!! | ATAAGTTAATCTTTGAAATA+TGG | - | chr4_3:65689331-65689350 | Msa0656410:intron | 15.0% |
| !! | AATATTATCTATACTAATGT+TGG | + | chr4_3:65689430-65689449 | None:intergenic | 15.0% |
| !!! | CAACATATTGAAATTTTTTA+AGG | - | chr4_3:65689734-65689753 | Msa0656410:intron | 15.0% |
| !! | AATAACAAAAACAAAATAGT+CGG | + | chr4_3:65691132-65691151 | None:intergenic | 15.0% |
| !!! | AAGTTCATTATTTTTTGAAT+AGG | - | chr4_3:65691165-65691184 | Msa0656410:intron | 15.0% |
| !!! | GATAATATTTCTGATTCATT+TGG | - | chr4_3:65686702-65686721 | Msa0656410:three_prime_UTR | 20.0% |
| !!! | GTCATGATTTATTTTTTGTT+TGG | - | chr4_3:65687595-65687614 | Msa0656410:intron | 20.0% |
| !!! | CATGATTTATTTTTTGTTTG+GGG | - | chr4_3:65687597-65687616 | Msa0656410:intron | 20.0% |
| !!! | TAGAATTTTTTGTCCTTTAA+TGG | - | chr4_3:65687844-65687863 | Msa0656410:intron | 20.0% |
| !!! | TTTAAAGTATCCAATATTTC+TGG | - | chr4_3:65688121-65688140 | Msa0656410:intron | 20.0% |
| !!! | TTAAAGTATCCAATATTTCT+GGG | - | chr4_3:65688122-65688141 | Msa0656410:intron | 20.0% |
| !! | AGTAAAAATTCATATGAAGA+GGG | + | chr4_3:65688277-65688296 | None:intergenic | 20.0% |
| !! | AAGTAAAAATTCATATGAAG+AGG | + | chr4_3:65688278-65688297 | None:intergenic | 20.0% |
| !!! | GAGTTAATTTTTTTAATCGA+CGG | - | chr4_3:65688537-65688556 | Msa0656410:CDS | 20.0% |
| !! | TGTGAAACATATGTATAAAA+TGG | - | chr4_3:65689294-65689313 | Msa0656410:intron | 20.0% |
| !! | TATAGTACTAAACAAACTAT+GGG | + | chr4_3:65689357-65689376 | None:intergenic | 20.0% |
| !! | TTATAGTACTAAACAAACTA+TGG | + | chr4_3:65689358-65689377 | None:intergenic | 20.0% |
| !!! | TAGTATAGATAATATTTCTG+CGG | - | chr4_3:65689434-65689453 | Msa0656410:intron | 20.0% |
| !!! | TTAAGGTTCTTAAATTTTAG+CGG | - | chr4_3:65689751-65689770 | Msa0656410:intron | 20.0% |
| !! | TTGAACAAAAATATACAACT+CGG | + | chr4_3:65689861-65689880 | None:intergenic | 20.0% |
| !! | CAATAATAGTATTTATCTGT+GGG | - | chr4_3:65690185-65690204 | Msa0656410:intron | 20.0% |
| !!! | TTTGTATGGTTTTTCTATAT+GGG | + | chr4_3:65690738-65690757 | None:intergenic | 20.0% |
| !!! | TTTTGTATGGTTTTTCTATA+TGG | + | chr4_3:65690739-65690758 | None:intergenic | 20.0% |
| !!! | AGAAAGTTTACAATTTTGTA+TGG | + | chr4_3:65690752-65690771 | None:intergenic | 20.0% |
| !! | TAATGATGTAATATGCTATT+AGG | + | chr4_3:65690918-65690937 | None:intergenic | 20.0% |
| !!! | TCATTATTTTTTGAATAGGA+AGG | - | chr4_3:65691169-65691188 | Msa0656410:intron | 20.0% |
| !! | ATAAATCCCTGAAATTTATT+AGG | + | chr4_3:65691362-65691381 | None:intergenic | 20.0% |
| !! | AATCCAAAGTAAGAAAAATA+AGG | + | chr4_3:65691465-65691484 | None:intergenic | 20.0% |
| !!! | CATTTTTCTTTCAAGTATTT+GGG | + | chr4_3:65692441-65692460 | None:intergenic | 20.0% |
| !!! | TCATTTTTCTTTCAAGTATT+TGG | + | chr4_3:65692442-65692461 | None:intergenic | 20.0% |
| !! | AAATACTTGAAAGAAAAATG+AGG | - | chr4_3:65692441-65692460 | Msa0656410:five_prime_UTR | 20.0% |
| !!! | ATTCTGCTTTTTATTTTCTG+TGG | - | chr4_3:65686856-65686875 | Msa0656410:three_prime_UTR | 25.0% |
| !!! | TTCTGCTTTTTATTTTCTGT+GGG | - | chr4_3:65686857-65686876 | Msa0656410:three_prime_UTR | 25.0% |
| !!! | AATAAAACCCATTATTTTGC+TGG | - | chr4_3:65687122-65687141 | Msa0656410:intron | 25.0% |
| ! | ATAATTCAATGTAGTCACTT+GGG | - | chr4_3:65687288-65687307 | Msa0656410:intron | 25.0% |
| ! | AAGAATTATGACATTGTGAT+TGG | - | chr4_3:65687395-65687414 | Msa0656410:CDS | 25.0% |
| !! | TCTTGTGTGTTTTCTTTTAT+AGG | - | chr4_3:65687725-65687744 | Msa0656410:CDS | 25.0% |
| ! | AAAACTCAAAAGTCCATTAA+AGG | + | chr4_3:65687860-65687879 | None:intergenic | 25.0% |
| !! | TTAAACTATGAGCAACTTTT+TGG | + | chr4_3:65688590-65688609 | None:intergenic | 25.0% |
| ! | CATATTTCATACTATGTTAG+TGG | - | chr4_3:65688623-65688642 | Msa0656410:intron | 25.0% |
| !!! | TTGAACCAAGTTATTTCTAT+TGG | - | chr4_3:65688772-65688791 | Msa0656410:CDS | 25.0% |
| !!! | TTTTTCTTGTTTCAATGTTG+TGG | - | chr4_3:65688805-65688824 | Msa0656410:intron | 25.0% |
| ! | AATCATTCAACTGTTAATGT+GGG | + | chr4_3:65689029-65689048 | None:intergenic | 25.0% |
| ! | TCAAAATGACAAAATATGTG+TGG | + | chr4_3:65689142-65689161 | None:intergenic | 25.0% |
| ! | TAGAATGTATAAGATTGAAG+TGG | - | chr4_3:65689186-65689205 | Msa0656410:intron | 25.0% |
| ! | TAAATTTAGCTACATGATTG+TGG | - | chr4_3:65689215-65689234 | Msa0656410:intron | 25.0% |
| !!! | GGACTTTATTGTTTTTGTTA+TGG | - | chr4_3:65689240-65689259 | Msa0656410:intron | 25.0% |
| ! | TTATCTATACTAATGTTGGT+AGG | + | chr4_3:65689426-65689445 | None:intergenic | 25.0% |
| ! | CGTAATAAATTTGTAGATCT+GGG | - | chr4_3:65689892-65689911 | Msa0656410:intron | 25.0% |
| !! | TTGTGCTTAAATTTTTGTAG+TGG | + | chr4_3:65689992-65690011 | None:intergenic | 25.0% |
| ! | AAATTTAAGCACAAAGATGA+AGG | - | chr4_3:65689998-65690017 | Msa0656410:intron | 25.0% |
| ! | TCATTGTCAAAGTAGATATA+AGG | - | chr4_3:65690129-65690148 | Msa0656410:intron | 25.0% |
| ! | GCAATAATAGTATTTATCTG+TGG | - | chr4_3:65690184-65690203 | Msa0656410:intron | 25.0% |
| !! | ATTGAAAAAACTCCTTTTAC+TGG | - | chr4_3:65690234-65690253 | Msa0656410:intron | 25.0% |
| ! | AATGAAATACAACAGATATG+AGG | + | chr4_3:65690606-65690625 | None:intergenic | 25.0% |
| ! | AAACAGCAAAATTACTGTAT+AGG | - | chr4_3:65690783-65690802 | Msa0656410:CDS | 25.0% |
| ! | TAATATGCTATTAGGACATA+AGG | + | chr4_3:65690910-65690929 | None:intergenic | 25.0% |
| ! | TCAACTTACGTAAGTAAATA+CGG | - | chr4_3:65691294-65691313 | Msa0656410:CDS | 25.0% |
| ! | ACGAATTCCTAATAAATTTC+AGG | - | chr4_3:65691352-65691371 | Msa0656410:intron | 25.0% |
| ! | CGAATTCCTAATAAATTTCA+GGG | - | chr4_3:65691353-65691372 | Msa0656410:intron | 25.0% |
| ! | TGTTTCTCTCATATTATCTT+TGG | - | chr4_3:65691384-65691403 | Msa0656410:intron | 25.0% |
| ! | GTTTCTCTCATATTATCTTT+GGG | - | chr4_3:65691385-65691404 | Msa0656410:intron | 25.0% |
| !! | AGCTTTTGTATAATGAAAGA+AGG | + | chr4_3:65691853-65691872 | None:intergenic | 25.0% |
| ! | TACAAGTTAAAGGAAATAAG+AGG | + | chr4_3:65691941-65691960 | None:intergenic | 25.0% |
| !!! | TATTTCCTTTAACTTGTAAC+AGG | - | chr4_3:65691943-65691962 | Msa0656410:CDS | 25.0% |
| !!! | ATTTCCTTTAACTTGTAACA+GGG | - | chr4_3:65691944-65691963 | Msa0656410:CDS | 25.0% |
| !!! | TAGGTATTGCTATTTTAGTT+TGG | - | chr4_3:65692148-65692167 | Msa0656410:intron | 25.0% |
| ! | GTACAAAAGCAAAATTTCTT+TGG | + | chr4_3:65692216-65692235 | None:intergenic | 25.0% |
| ! | TGTAGGGTTTTTACGTTTTA+GGG | + | chr4_3:65686541-65686560 | None:intergenic | 30.0% |
| ! | TTGTAGGGTTTTTACGTTTT+AGG | + | chr4_3:65686542-65686561 | None:intergenic | 30.0% |
| AATAAAGTGCGAGATCAAAA+GGG | + | chr4_3:65686839-65686858 | None:intergenic | 30.0% | |
| TTTGTTCTTTACCTAAGACA+AGG | + | chr4_3:65687070-65687089 | None:intergenic | 30.0% | |
| GATAACTCCAGCAAAATAAT+GGG | + | chr4_3:65687132-65687151 | None:intergenic | 30.0% | |
| TGATAACTCCAGCAAAATAA+TGG | + | chr4_3:65687133-65687152 | None:intergenic | 30.0% | |
| CATAATTCAATGTAGTCACT+TGG | - | chr4_3:65687287-65687306 | Msa0656410:intron | 30.0% | |
| TGTCATAATTCTTGTGAAAG+AGG | + | chr4_3:65687388-65687407 | None:intergenic | 30.0% | |
| ! | TGACATAGAATTGGTAACAT+TGG | + | chr4_3:65687421-65687440 | None:intergenic | 30.0% |
| ACACAGTGTATTTCATTACA+GGG | - | chr4_3:65687680-65687699 | Msa0656410:intron | 30.0% | |
| ACTGTTCATTACCAATCAAA+TGG | - | chr4_3:65687777-65687796 | Msa0656410:CDS | 30.0% | |
| CTGTTCATTACCAATCAAAT+GGG | - | chr4_3:65687778-65687797 | Msa0656410:CDS | 30.0% | |
| TGTTCATTACCAATCAAATG+GGG | - | chr4_3:65687779-65687798 | Msa0656410:CDS | 30.0% | |
| !! | GTAACGGAAAAGTTGATATT+GGG | - | chr4_3:65687801-65687820 | Msa0656410:intron | 30.0% |
| AAAGCTAGTAAAACATGACT+AGG | + | chr4_3:65688007-65688026 | None:intergenic | 30.0% | |
| AAACCTTCTTGGAATTCTAT+TGG | - | chr4_3:65688094-65688113 | Msa0656410:intron | 30.0% | |
| AACCTTCTTGGAATTCTATT+GGG | - | chr4_3:65688095-65688114 | Msa0656410:intron | 30.0% | |
| ! | AGTTGATCTTACTGACATTT+TGG | - | chr4_3:65688328-65688347 | Msa0656410:CDS | 30.0% |
| !!! | AGTTTTAAAAACCCTATGAC+TGG | - | chr4_3:65688471-65688490 | Msa0656410:CDS | 30.0% |
| GCTTTAACCAAACATTTACT+TGG | + | chr4_3:65688504-65688523 | None:intergenic | 30.0% | |
| GTAGTAAATGAGCCATTATT+TGG | - | chr4_3:65688647-65688666 | Msa0656410:intron | 30.0% | |
| CTGATCCAATAGAAATAACT+TGG | + | chr4_3:65688780-65688799 | None:intergenic | 30.0% | |
| !! | AGTTATTTCTATTGGATCAG+AGG | - | chr4_3:65688780-65688799 | Msa0656410:CDS | 30.0% |
| !! | GTTATTTCTATTGGATCAGA+GGG | - | chr4_3:65688781-65688800 | Msa0656410:CDS | 30.0% |
| !!! | TGAATGTTGTTATTTTGCCA+TGG | - | chr4_3:65688922-65688941 | Msa0656410:intron | 30.0% |
| !!! | GAATGTTGTTATTTTGCCAT+GGG | - | chr4_3:65688923-65688942 | Msa0656410:intron | 30.0% |
| CTTAGTAGAACATTGTCAAA+GGG | + | chr4_3:65688982-65689001 | None:intergenic | 30.0% | |
| TCTTAGTAGAACATTGTCAA+AGG | + | chr4_3:65688983-65689002 | None:intergenic | 30.0% | |
| ATCATTCAACTGTTAATGTG+GGG | + | chr4_3:65689028-65689047 | None:intergenic | 30.0% | |
| CAATCATTCAACTGTTAATG+TGG | + | chr4_3:65689030-65689049 | None:intergenic | 30.0% | |
| TTTCACAATTAATGTCTGCA+TGG | + | chr4_3:65689281-65689300 | None:intergenic | 30.0% | |
| !! | AGTATCTCGTTTGATTTGAT+AGG | - | chr4_3:65689503-65689522 | Msa0656410:intron | 30.0% |
| AGGATAAATTATTCTGTTCC+AGG | - | chr4_3:65689523-65689542 | Msa0656410:intron | 30.0% | |
| ATGTTGCAATTGCAATACTT+AGG | + | chr4_3:65689588-65689607 | None:intergenic | 30.0% | |
| !! | AGTATCTCGTTTGATTTGAT+AGG | - | chr4_3:65689503-65689522 | Msa0656410:intron | 30.0% |
| AGGATAAATTATTCTGTTCC+AGG | - | chr4_3:65689523-65689542 | Msa0656410:intron | 30.0% | |
| ATGTTGCAATTGCAATACTT+AGG | + | chr4_3:65689588-65689607 | None:intergenic | 30.0% | |
| ACTTCTTTGATAGAAAGAGA+TGG | + | chr4_3:65689818-65689837 | None:intergenic | 30.0% | |
| GCGTAATAAATTTGTAGATC+TGG | - | chr4_3:65689891-65689910 | Msa0656410:intron | 30.0% | |
| AAAATAAGCCCAATGATTAC+CGG | + | chr4_3:65690068-65690087 | None:intergenic | 30.0% | |
| ATGTTGATCTTCATGTTTGT+AGG | - | chr4_3:65690156-65690175 | Msa0656410:intron | 30.0% | |
| TGTTGATCTTCATGTTTGTA+GGG | - | chr4_3:65690157-65690176 | Msa0656410:intron | 30.0% | |
| ! | TATTGCAATGCTTTTATCCA+CGG | + | chr4_3:65690450-65690469 | None:intergenic | 30.0% |
| !! | TGGATAAAAGCATTGCAATA+TGG | - | chr4_3:65690450-65690469 | Msa0656410:intron | 30.0% |
| !! | GGATAAAAGCATTGCAATAT+GGG | - | chr4_3:65690451-65690470 | Msa0656410:intron | 30.0% |
| TAGAATGAAAATTGAGTCGA+TGG | + | chr4_3:65690578-65690597 | None:intergenic | 30.0% | |
| TGTATTTCATTGTACTGAGT+AGG | - | chr4_3:65690615-65690634 | Msa0656410:intron | 30.0% | |
| GATGCTTTAATTGTCTTATC+TGG | - | chr4_3:65690861-65690880 | Msa0656410:CDS | 30.0% | |
| ! | AGGAACTTTTTATCGGAAAA+TGG | + | chr4_3:65690890-65690909 | None:intergenic | 30.0% |
| ! | GGACATAAGGAACTTTTTAT+CGG | + | chr4_3:65690897-65690916 | None:intergenic | 30.0% |
| TCCTTCAAAAATGCATTTCT+GGG | + | chr4_3:65691027-65691046 | None:intergenic | 30.0% | |
| TTCCTTCAAAAATGCATTTC+TGG | + | chr4_3:65691028-65691047 | None:intergenic | 30.0% | |
| AACAAAAACAAAATAGTCGG+CGG | + | chr4_3:65691129-65691148 | None:intergenic | 30.0% | |
| !! | TTACGTAAGTTGATTATCAG+CGG | + | chr4_3:65691287-65691306 | None:intergenic | 30.0% |
| GTAAGAAAAATAAGGCAGTT+TGG | + | chr4_3:65691457-65691476 | None:intergenic | 30.0% | |
| !!! | CTGCCTTATTTTTCTTACTT+TGG | - | chr4_3:65691459-65691478 | Msa0656410:intron | 30.0% |
| TGGTGAATAAACAATAGTTG+GGG | + | chr4_3:65691611-65691630 | None:intergenic | 30.0% | |
| CTGGTGAATAAACAATAGTT+GGG | + | chr4_3:65691612-65691631 | None:intergenic | 30.0% | |
| AACCTAGCTTATACTCAAAT+AGG | + | chr4_3:65691781-65691800 | None:intergenic | 30.0% | |
| ! | TTTGAATATTTGAAGGCATG+AGG | + | chr4_3:65692051-65692070 | None:intergenic | 30.0% |
| ! | AAGGTGCTTTGAATATTTGA+AGG | + | chr4_3:65692058-65692077 | None:intergenic | 30.0% |
| !!! | TTGCTATTTTAGTTTGGACA+AGG | - | chr4_3:65692154-65692173 | Msa0656410:intron | 30.0% |
| GCAGATAAGGAAATTAATAG+AGG | + | chr4_3:65692266-65692285 | None:intergenic | 30.0% | |
| ! | GTAGGGTTTTTACGTTTTAG+GGG | + | chr4_3:65686540-65686559 | None:intergenic | 35.0% |
| AACTAATTGAAGATGACTCG+CGG | - | chr4_3:65686749-65686768 | Msa0656410:three_prime_UTR | 35.0% | |
| GAATAAAGTGCGAGATCAAA+AGG | + | chr4_3:65686840-65686859 | None:intergenic | 35.0% | |
| ! | TCTCTCCATGCTTTTCATAT+TGG | - | chr4_3:65687040-65687059 | Msa0656410:intron | 35.0% |
| ! | TCCATGCTTTTCATATTGGA+TGG | - | chr4_3:65687044-65687063 | Msa0656410:intron | 35.0% |
| CTGGAGTTATCACTGTTAAA+TGG | - | chr4_3:65687141-65687160 | Msa0656410:intron | 35.0% | |
| TCATAGCTCTTGAATTGCAA+TGG | + | chr4_3:65687209-65687228 | None:intergenic | 35.0% | |
| ! | TGACATAGAATTGGTGACAT+TGG | - | chr4_3:65687322-65687341 | Msa0656410:intron | 35.0% |
| ! | ATTGGTGACATTGGTAACAT+TGG | - | chr4_3:65687331-65687350 | Msa0656410:intron | 35.0% |
| AAGCAAACGCACAAAAATTG+TGG | + | chr4_3:65687543-65687562 | None:intergenic | 35.0% | |
| ! | GATATTTTACGTGACACCAT+GGG | - | chr4_3:65687634-65687653 | Msa0656410:intron | 35.0% |
| GTAATGAAATACACTGTGTG+TGG | + | chr4_3:65687679-65687698 | None:intergenic | 35.0% | |
| CACACAGTGTATTTCATTAC+AGG | - | chr4_3:65687679-65687698 | Msa0656410:intron | 35.0% | |
| TGTCTCATGAATCATCTTGA+AGG | - | chr4_3:65687749-65687768 | Msa0656410:CDS | 35.0% | |
| TTACCAATCAAATGGGGTAA+CGG | - | chr4_3:65687785-65687804 | Msa0656410:CDS | 35.0% | |
| !! | GGTAACGGAAAAGTTGATAT+TGG | - | chr4_3:65687800-65687819 | Msa0656410:intron | 35.0% |
| CATGCAACATATTATCAACG+AGG | + | chr4_3:65688060-65688079 | None:intergenic | 35.0% | |
| ATCCCAATAGAATTCCAAGA+AGG | + | chr4_3:65688100-65688119 | None:intergenic | 35.0% | |
| ! | TGAAACTGATGACTCTGAAA+TGG | - | chr4_3:65688171-65688190 | Msa0656410:intron | 35.0% |
| TCCTTAGCCAAGTAAATGTT+TGG | - | chr4_3:65688494-65688513 | Msa0656410:CDS | 35.0% | |
| ACCAAACATTTACTTGGCTA+AGG | + | chr4_3:65688498-65688517 | None:intergenic | 35.0% | |
| GATACGACAGAAAAGTTGAA+GGG | + | chr4_3:65688675-65688694 | None:intergenic | 35.0% | |
| TGATACGACAGAAAAGTTGA+AGG | + | chr4_3:65688676-65688695 | None:intergenic | 35.0% | |
| TCTTTCCTACATGCTATTAG+TGG | - | chr4_3:65688698-65688717 | Msa0656410:intron | 35.0% | |
| ATAGCACAAAGGATTCACAA+TGG | - | chr4_3:65688832-65688851 | Msa0656410:intron | 35.0% | |
| TAGCACAAAGGATTCACAAT+GGG | - | chr4_3:65688833-65688852 | Msa0656410:intron | 35.0% | |
| !!! | GCAAATTGCACTGATTGTTT+TGG | - | chr4_3:65688897-65688916 | Msa0656410:intron | 35.0% |
| CTTGGGTAATGACAAAATCT+GGG | + | chr4_3:65688956-65688975 | None:intergenic | 35.0% | |
| TCATTCAACTGTTAATGTGG+GGG | + | chr4_3:65689027-65689046 | None:intergenic | 35.0% | |
| AAAGTGAGTATTTGAGAGCT+TGG | - | chr4_3:65689063-65689082 | Msa0656410:CDS | 35.0% | |
| TTGAGAGCTTGGAATTGTAA+CGG | - | chr4_3:65689074-65689093 | Msa0656410:intron | 35.0% | |
| ! | TCTAATGAGTTGAAGTTTGC+TGG | - | chr4_3:65689163-65689182 | Msa0656410:intron | 35.0% |
| TTTAGCTACATGATTGTGGT+TGG | - | chr4_3:65689219-65689238 | Msa0656410:intron | 35.0% | |
| !! | ATACTAGCTCTGAACTTTGT+CGG | + | chr4_3:65689488-65689507 | None:intergenic | 35.0% |
| ! | CAGGTATAATTTTTGCCCTT+GGG | - | chr4_3:65689542-65689561 | Msa0656410:intron | 35.0% |
| !! | TTAAATTTTAGCGGCAGCTA+AGG | - | chr4_3:65689760-65689779 | Msa0656410:intron | 35.0% |
| GTTGATCTTCATGTTTGTAG+GGG | - | chr4_3:65690158-65690177 | Msa0656410:intron | 35.0% | |
| ACACTGAAATGTTCCGAAAA+AGG | + | chr4_3:65690313-65690332 | None:intergenic | 35.0% | |
| CAAAAACATGAGGTTCTGTA+GGG | + | chr4_3:65690418-65690437 | None:intergenic | 35.0% | |
| CTGATGTGAATGTATTGTCA+TGG | - | chr4_3:65690522-65690541 | Msa0656410:intron | 35.0% | |
| TGAATGTATTGTCATGGAAC+AGG | - | chr4_3:65690528-65690547 | Msa0656410:CDS | 35.0% | |
| !!! | AGGTATTCAGCATTGACTTT+TGG | - | chr4_3:65690548-65690567 | Msa0656410:CDS | 35.0% |
| TTTCATTGTACTGAGTAGGT+TGG | - | chr4_3:65690619-65690638 | Msa0656410:intron | 35.0% | |
| ! | GTTTTTCTATATGGGCAAAG+GGG | + | chr4_3:65690730-65690749 | None:intergenic | 35.0% |
| ! | GGTTTTTCTATATGGGCAAA+GGG | + | chr4_3:65690731-65690750 | None:intergenic | 35.0% |
| ! | TGGTTTTTCTATATGGGCAA+AGG | + | chr4_3:65690732-65690751 | None:intergenic | 35.0% |
| ! | ACCCAGAAATGCATTTTTGA+AGG | - | chr4_3:65691023-65691042 | Msa0656410:intron | 35.0% |
| TATTTGCAGAGTCCATGAAA+GGG | + | chr4_3:65691416-65691435 | None:intergenic | 35.0% | |
| TTATTTGCAGAGTCCATGAA+AGG | + | chr4_3:65691417-65691436 | None:intergenic | 35.0% | |
| TAATCCTTTGCCACAGAATA+TGG | - | chr4_3:65691498-65691517 | Msa0656410:intron | 35.0% | |
| TGAATAAACAATAGTTGGGG+AGG | + | chr4_3:65691608-65691627 | None:intergenic | 35.0% | |
| CCTGGTGAATAAACAATAGT+TGG | + | chr4_3:65691613-65691632 | None:intergenic | 35.0% | |
| CCAACTATTGTTTATTCACC+AGG | - | chr4_3:65691610-65691629 | Msa0656410:intron | 35.0% | |
| GCAAAGTGATTCAAATTACC+TGG | + | chr4_3:65691631-65691650 | None:intergenic | 35.0% | |
| AGCCTATTTGAGTATAAGCT+AGG | - | chr4_3:65691776-65691795 | Msa0656410:intron | 35.0% | |
| CTAATCAAGGAGTTCTATCA+TGG | + | chr4_3:65691901-65691920 | None:intergenic | 35.0% | |
| TTGTCCCTGTTACAAGTTAA+AGG | + | chr4_3:65691951-65691970 | None:intergenic | 35.0% | |
| ! | AAGTTTTCAACCACCTTACA+AGG | - | chr4_3:65692113-65692132 | Msa0656410:intron | 35.0% |
| CTTTGGCATAACTTAGATTC+AGG | + | chr4_3:65692199-65692218 | None:intergenic | 35.0% | |
| AAACTTAGCACAAGCAGATA+AGG | + | chr4_3:65692279-65692298 | None:intergenic | 35.0% | |
| !!! | TTGAGTTGAGTGTTTTGAGA+TGG | - | chr4_3:65692307-65692326 | Msa0656410:intron | 35.0% |
| ACTAGGTTACGCAGATTGTA+GGG | + | chr4_3:65686557-65686576 | None:intergenic | 40.0% | |
| AACTAGGTTACGCAGATTGT+AGG | + | chr4_3:65686558-65686577 | None:intergenic | 40.0% | |
| GACGAAGAAGAGAAAGAACT+AGG | + | chr4_3:65686574-65686593 | None:intergenic | 40.0% | |
| CGGCATAAAACATCGTCAAA+AGG | - | chr4_3:65686769-65686788 | Msa0656410:three_prime_UTR | 40.0% | |
| AAAGGCAAAGAGCAAGAACA+AGG | - | chr4_3:65686787-65686806 | Msa0656410:three_prime_UTR | 40.0% | |
| GAAACGGAGTGAATCATCTT+CGG | - | chr4_3:65686916-65686935 | Msa0656410:CDS | 40.0% | |
| TGGAGAGAATTGTAAGCAGA+AGG | + | chr4_3:65687028-65687047 | None:intergenic | 40.0% | |
| GCCATCCAATATGAAAAGCA+TGG | + | chr4_3:65687048-65687067 | None:intergenic | 40.0% | |
| !! | ATATTGGATGGCCTTGTCTT+AGG | - | chr4_3:65687056-65687075 | Msa0656410:intron | 40.0% |
| GCACTTGAGTGACATAGAAT+TGG | + | chr4_3:65687430-65687449 | None:intergenic | 40.0% | |
| ! | ACACCTTCAATCAGAAGTGT+CGG | - | chr4_3:65687488-65687507 | Msa0656410:intron | 40.0% |
| !! | TCGGTACTTTAGAGTTCAAG+AGG | - | chr4_3:65687507-65687526 | Msa0656410:intron | 40.0% |
| ! | CGATATTTTACGTGACACCA+TGG | - | chr4_3:65687633-65687652 | Msa0656410:intron | 40.0% |
| TTCTGTTCGAACTAAACCCA+TGG | + | chr4_3:65687653-65687672 | None:intergenic | 40.0% | |
| GTATTTCATTACAGGGACAC+AGG | - | chr4_3:65687687-65687706 | Msa0656410:intron | 40.0% | |
| TTTCCGTTACCCCATTTGAT+TGG | + | chr4_3:65687791-65687810 | None:intergenic | 40.0% | |
| ACAAGGCGATTCTATGTGTT+GGG | + | chr4_3:65687903-65687922 | None:intergenic | 40.0% | |
| ACGTCTCTTCCCAGAAATAT+TGG | + | chr4_3:65688134-65688153 | None:intergenic | 40.0% | |
| GAGTCATCAGTTTCACGTTT+AGG | + | chr4_3:65688166-65688185 | None:intergenic | 40.0% | |
| !! | ACTGATGACTCTGAAATGGA+TGG | - | chr4_3:65688175-65688194 | Msa0656410:intron | 40.0% |
| GATAGTGAAGACGAAGAAGA+AGG | - | chr4_3:65688220-65688239 | Msa0656410:intron | 40.0% | |
| TCAACTTCAACACAGTCAAG+AGG | + | chr4_3:65688314-65688333 | None:intergenic | 40.0% | |
| CTCACGAAGGTTGTATTAAC+CGG | - | chr4_3:65688382-65688401 | Msa0656410:intron | 40.0% | |
| ! | TATATGGGGATTTTGTGCCA+TGG | + | chr4_3:65688415-65688434 | None:intergenic | 40.0% |
| ATCCCCATATATGTGCATCT+TGG | - | chr4_3:65688424-65688443 | Msa0656410:intron | 40.0% | |
| TCCCCATATATGTGCATCTT+GGG | - | chr4_3:65688425-65688444 | Msa0656410:intron | 40.0% | |
| TGCCCAAGATGCACATATAT+GGG | + | chr4_3:65688430-65688449 | None:intergenic | 40.0% | |
| !! | AGTTGAAGGGTGCCAAATAA+TGG | + | chr4_3:65688662-65688681 | None:intergenic | 40.0% |
| TCTAGCCACTAATAGCATGT+AGG | + | chr4_3:65688706-65688725 | None:intergenic | 40.0% | |
| AGGATTCACAATGGGAATAG+AGG | - | chr4_3:65688841-65688860 | Msa0656410:intron | 40.0% | |
| GGATTCACAATGGGAATAGA+GGG | - | chr4_3:65688842-65688861 | Msa0656410:intron | 40.0% | |
| GCTTGGGTAATGACAAAATC+TGG | + | chr4_3:65688957-65688976 | None:intergenic | 40.0% | |
| ACATTGTCAAAGGGATGCTT+GGG | + | chr4_3:65688973-65688992 | None:intergenic | 40.0% | |
| AACATTGTCAAAGGGATGCT+TGG | + | chr4_3:65688974-65688993 | None:intergenic | 40.0% | |
| ! | TTGTAACGGAGAACTCGATT+TGG | - | chr4_3:65689088-65689107 | Msa0656410:intron | 40.0% |
| CCAAGGGCAAAAATTATACC+TGG | + | chr4_3:65689544-65689563 | None:intergenic | 40.0% | |
| ! | CCAGGTATAATTTTTGCCCT+TGG | - | chr4_3:65689541-65689560 | Msa0656410:intron | 40.0% |
| GTAACCTCATTTGTACCCAA+GGG | + | chr4_3:65689560-65689579 | None:intergenic | 40.0% | |
| AGTAACCTCATTTGTACCCA+AGG | + | chr4_3:65689561-65689580 | None:intergenic | 40.0% | |
| ! | CAGGTATAATTTTCGCCCTT+GGG | - | chr4_3:65689674-65689693 | Msa0656410:intron | 40.0% |
| GTAACCTCATTTGTACCCAA+GGG | + | chr4_3:65689560-65689579 | None:intergenic | 40.0% | |
| AGTAACCTCATTTGTACCCA+AGG | + | chr4_3:65689561-65689580 | None:intergenic | 40.0% | |
| ATGAAGGCTATGCTATAGAC+TGG | - | chr4_3:65690014-65690033 | Msa0656410:intron | 40.0% | |
| GCTTGTATCCGGTAATCATT+GGG | - | chr4_3:65690057-65690076 | Msa0656410:intron | 40.0% | |
| CTGTCAGTATGTCCAGTAAA+AGG | + | chr4_3:65690249-65690268 | None:intergenic | 40.0% | |
| !! | GTTCCGAAAAAGGTATTGCT+TGG | + | chr4_3:65690303-65690322 | None:intergenic | 40.0% |
| GCAAAAACATGAGGTTCTGT+AGG | + | chr4_3:65690419-65690438 | None:intergenic | 40.0% | |
| GAGCAAGAAGCAAAAACATG+AGG | + | chr4_3:65690428-65690447 | None:intergenic | 40.0% | |
| TGCAATATGGGATACTCGTT+TGG | - | chr4_3:65690463-65690482 | Msa0656410:intron | 40.0% | |
| GCAATATGGGATACTCGTTT+GGG | - | chr4_3:65690464-65690483 | Msa0656410:intron | 40.0% | |
| CAATATGGGATACTCGTTTG+GGG | - | chr4_3:65690465-65690484 | Msa0656410:intron | 40.0% | |
| ! | TAGGTTGGCTAGTTGTATGT+TGG | - | chr4_3:65690634-65690653 | Msa0656410:intron | 40.0% |
| TCAGACTGCTTAAGGTATGT+TGG | - | chr4_3:65690696-65690715 | Msa0656410:intron | 40.0% | |
| AAGGAACTTCTAGATGCACT+TGG | - | chr4_3:65691042-65691061 | Msa0656410:intron | 40.0% | |
| GTATTCAAAATGCGCTACCA+CGG | + | chr4_3:65691200-65691219 | None:intergenic | 40.0% | |
| TGGATGTGATTGGATGCTTA+TGG | + | chr4_3:65691222-65691241 | None:intergenic | 40.0% | |
| ATCCAATCACATCCATTGAG+TGG | - | chr4_3:65691227-65691246 | Msa0656410:intron | 40.0% | |
| TACACCATCCACAGAATTGT+TGG | - | chr4_3:65691329-65691348 | Msa0656410:CDS | 40.0% | |
| GAATTCGTCCAACAATTCTG+TGG | + | chr4_3:65691340-65691359 | None:intergenic | 40.0% | |
| !! | CTTTGGGTTTTACCCTTTCA+TGG | - | chr4_3:65691401-65691420 | Msa0656410:intron | 40.0% |
| !! | AGGAGCGTTTACTTGTTCTT+GGG | + | chr4_3:65691576-65691595 | None:intergenic | 40.0% |
| TGCTCAACAATGAGTACGTT+TGG | - | chr4_3:65691648-65691667 | Msa0656410:intron | 40.0% | |
| GCTCAACAATGAGTACGTTT+GGG | - | chr4_3:65691649-65691668 | Msa0656410:intron | 40.0% | |
| GCAGTACATACTATCATTCC+AGG | + | chr4_3:65692010-65692029 | None:intergenic | 40.0% | |
| ATAGTATGTACTGCAGCAGA+TGG | - | chr4_3:65692016-65692035 | Msa0656410:CDS | 40.0% | |
| ATAGCAGATACTGCCTTGTA+AGG | + | chr4_3:65692129-65692148 | None:intergenic | 40.0% | |
| TACAAGGCAGTATCTGCTAT+AGG | - | chr4_3:65692129-65692148 | Msa0656410:intron | 40.0% | |
| GGCATAACTTAGATTCAGGA+TGG | + | chr4_3:65692195-65692214 | None:intergenic | 40.0% | |
| !!! | AGTTGAGTGTTTTGAGATGG+TGG | - | chr4_3:65692310-65692329 | Msa0656410:intron | 40.0% |
| !!! | GTTGAGTGTTTTGAGATGGT+GGG | - | chr4_3:65692311-65692330 | Msa0656410:intron | 40.0% |
| ACCTTTGACAAACCTGTGAG+TGG | + | chr4_3:65686609-65686628 | None:intergenic | 45.0% | |
| TCTTCCAACTTATCCACACC+AGG | + | chr4_3:65686983-65687002 | None:intergenic | 45.0% | |
| TAGTCACTTGGGTAGCACTT+GGG | - | chr4_3:65687299-65687318 | Msa0656410:intron | 45.0% | |
| GCACTTGGGTGACATAGAAT+TGG | - | chr4_3:65687313-65687332 | Msa0656410:intron | 45.0% | |
| TACACCGACACAAGTGACTA+CGG | + | chr4_3:65687456-65687475 | None:intergenic | 45.0% | |
| ! | GTACCGACACTTCTGATTGA+AGG | + | chr4_3:65687494-65687513 | None:intergenic | 45.0% |
| CACAAGGCGATTCTATGTGT+TGG | + | chr4_3:65687904-65687923 | None:intergenic | 45.0% | |
| CACTAGCAGATAGCATCACA+AGG | + | chr4_3:65687920-65687939 | None:intergenic | 45.0% | |
| TAATATGTTGCATGTGCCCC+AGG | - | chr4_3:65688066-65688085 | Msa0656410:intron | 45.0% | |
| !! | TGACTCTGAAATGGATGGTG+AGG | - | chr4_3:65688180-65688199 | Msa0656410:intron | 45.0% |
| AGTGAAGACGAAGAAGAAGG+TGG | - | chr4_3:65688223-65688242 | Msa0656410:intron | 45.0% | |
| TCTGTTCACACCTACAGTTG+CGG | - | chr4_3:65688352-65688371 | Msa0656410:intron | 45.0% | |
| TATTAACCGGATACGCTCCA+TGG | - | chr4_3:65688395-65688414 | Msa0656410:intron | 45.0% | |
| GCCCAAGATGCACATATATG+GGG | + | chr4_3:65688429-65688448 | None:intergenic | 45.0% | |
| CTGCCCAAGATGCACATATA+TGG | + | chr4_3:65688431-65688450 | None:intergenic | 45.0% | |
| TTGGCTAAGGACCAGTCATA+GGG | + | chr4_3:65688485-65688504 | None:intergenic | 45.0% | |
| GTTGTGGCTGAATAGCACAA+AGG | - | chr4_3:65688821-65688840 | Msa0656410:intron | 45.0% | |
| ! | TGTTGGTAGGTTCACAAGTC+AGG | + | chr4_3:65689413-65689432 | None:intergenic | 45.0% |
| ! | TATTTCTGCGGTTCCACAAC+AGG | - | chr4_3:65689446-65689465 | Msa0656410:intron | 45.0% |
| TATTATCTCCCGACCTGTTG+TGG | + | chr4_3:65689462-65689481 | None:intergenic | 45.0% | |
| TTTGCCCTTGGGTACAAATG+AGG | - | chr4_3:65689553-65689572 | Msa0656410:intron | 45.0% | |
| CCAAGGGCGAAAATTATACC+TGG | + | chr4_3:65689676-65689695 | None:intergenic | 45.0% | |
| ! | CCAGGTATAATTTTCGCCCT+TGG | - | chr4_3:65689673-65689692 | Msa0656410:intron | 45.0% |
| ATCAACTCCTTGGACACCTT+CGG | + | chr4_3:65689957-65689976 | None:intergenic | 45.0% | |
| GGCTTGTATCCGGTAATCAT+TGG | - | chr4_3:65690056-65690075 | Msa0656410:intron | 45.0% | |
| TTCCATGTTGCAGCAGATGT+AGG | + | chr4_3:65690213-65690232 | None:intergenic | 45.0% | |
| !! | CCGAAAAAGGTATTGCTTGG+CGG | + | chr4_3:65690300-65690319 | None:intergenic | 45.0% |
| ! | CCGCCAAGCAATACCTTTTT+CGG | - | chr4_3:65690297-65690316 | Msa0656410:intron | 45.0% |
| TGTTCAATGAACCCTTGCAG+TGG | - | chr4_3:65690390-65690409 | Msa0656410:intron | 45.0% | |
| !! | TGTTTTTGCTTCTTGCTCCG+TGG | - | chr4_3:65690430-65690449 | Msa0656410:intron | 45.0% |
| !! | TGCGTCTTTTCAAGCACACA+AGG | - | chr4_3:65690499-65690518 | Msa0656410:intron | 45.0% |
| TCGTGATCTCAGACTGCTTA+AGG | - | chr4_3:65690688-65690707 | Msa0656410:intron | 45.0% | |
| TGAATAGGAAGGAGATTCCG+TGG | - | chr4_3:65691180-65691199 | Msa0656410:intron | 45.0% | |
| CTCCACTCAATGGATGTGAT+TGG | + | chr4_3:65691232-65691251 | None:intergenic | 45.0% | |
| TCCACACGAAGCTTCTTCAT+TGG | - | chr4_3:65691252-65691271 | Msa0656410:intron | 45.0% | |
| TCGTCCAACAATTCTGTGGA+TGG | + | chr4_3:65691336-65691355 | None:intergenic | 45.0% | |
| ! | CCTCGTCCTTTTCCAAAGAA+AGG | + | chr4_3:65691526-65691545 | None:intergenic | 45.0% |
| ! | CCTTTCTTTGGAAAAGGACG+AGG | - | chr4_3:65691523-65691542 | Msa0656410:intron | 45.0% |
| TTTGGAAAAGGACGAGGAAG+AGG | - | chr4_3:65691529-65691548 | Msa0656410:intron | 45.0% | |
| !! | CAGGAGCGTTTACTTGTTCT+TGG | + | chr4_3:65691577-65691596 | None:intergenic | 45.0% |
| AAGACCCCAAAGAACTGCAT+TGG | - | chr4_3:65691972-65691991 | Msa0656410:CDS | 45.0% | |
| TGTGCCAATGCAGTTCTTTG+GGG | + | chr4_3:65691979-65691998 | None:intergenic | 45.0% | |
| GTGTGCCAATGCAGTTCTTT+GGG | + | chr4_3:65691980-65691999 | None:intergenic | 45.0% | |
| TGTGTGCCAATGCAGTTCTT+TGG | + | chr4_3:65691981-65692000 | None:intergenic | 45.0% | |
| GTGTATCATGCAGCTTCTGA+TGG | + | chr4_3:65692082-65692101 | None:intergenic | 45.0% | |
| ACCAACAACAAGCCACTCAC+AGG | - | chr4_3:65686594-65686613 | Msa0656410:three_prime_UTR | 50.0% | |
| !! | ACCTGTGAGTGGCTTGTTGT+TGG | + | chr4_3:65686598-65686617 | None:intergenic | 50.0% |
| GCCACTCACAGGTTTGTCAA+AGG | - | chr4_3:65686605-65686624 | Msa0656410:three_prime_UTR | 50.0% | |
| ACGGAGTGAATCATCTTCGG+CGG | - | chr4_3:65686919-65686938 | Msa0656410:CDS | 50.0% | |
| ! | CACACTTTTACCGGAACCTG+TGG | + | chr4_3:65686956-65686975 | None:intergenic | 50.0% |
| CACAGGTTCCGGTAAAAGTG+TGG | - | chr4_3:65686954-65686973 | Msa0656410:CDS | 50.0% | |
| ! | CCAGGTTGCCACACTTTTAC+CGG | + | chr4_3:65686965-65686984 | None:intergenic | 50.0% |
| ! | AAAAGTGTGGCAACCTGGTG+TGG | - | chr4_3:65686967-65686986 | Msa0656410:CDS | 50.0% |
| GCAACCTGGTGTGGATAAGT+TGG | - | chr4_3:65686976-65686995 | Msa0656410:CDS | 50.0% | |
| GTAGTCACTTGGGTAGCACT+TGG | - | chr4_3:65687298-65687317 | Msa0656410:intron | 50.0% | |
| GCCGATCACAATGTCACAAG+CGG | - | chr4_3:65687353-65687372 | Msa0656410:intron | 50.0% | |
| GCCGCTTGTGACATTGTGAT+CGG | + | chr4_3:65687357-65687376 | None:intergenic | 50.0% | |
| CTACCCGTAGTCACTTGTGT+CGG | - | chr4_3:65687449-65687468 | Msa0656410:CDS | 50.0% | |
| ACACCGACACAAGTGACTAC+GGG | + | chr4_3:65687455-65687474 | None:intergenic | 50.0% | |
| ! | CTTGTGTCGGTGTAGTACAC+TGG | - | chr4_3:65687462-65687481 | Msa0656410:CDS | 50.0% |
| CAAGAAGGTTTCTCAGCCTG+GGG | + | chr4_3:65688085-65688104 | None:intergenic | 50.0% | |
| CCAAGAAGGTTTCTCAGCCT+GGG | + | chr4_3:65688086-65688105 | None:intergenic | 50.0% | |
| TCCAAGAAGGTTTCTCAGCC+TGG | + | chr4_3:65688087-65688106 | None:intergenic | 50.0% | |
| ! | TGGTGAGGATAGTGATAGCG+AGG | - | chr4_3:65688195-65688214 | Msa0656410:intron | 50.0% |
| TACCTGCAAAGTAGGACCAC+CGG | + | chr4_3:65688251-65688270 | None:intergenic | 50.0% | |
| !! | GAGGGTGTTACCTGCAAAGT+AGG | + | chr4_3:65688259-65688278 | None:intergenic | 50.0% |
| TTCACACCTACAGTTGCGGA+AGG | - | chr4_3:65688356-65688375 | Msa0656410:intron | 50.0% | |
| GAGTTACCTTCCGCAACTGT+AGG | + | chr4_3:65688365-65688384 | None:intergenic | 50.0% | |
| TTGCGGAAGGTAACTCACGA+AGG | - | chr4_3:65688369-65688388 | Msa0656410:intron | 50.0% | |
| TTTGTGCCATGGAGCGTATC+CGG | + | chr4_3:65688404-65688423 | None:intergenic | 50.0% | |
| TGTGCATCTTGGGCAGAATC+TGG | - | chr4_3:65688435-65688454 | Msa0656410:intron | 50.0% | |
| CTTGGCTAAGGACCAGTCAT+AGG | + | chr4_3:65688486-65688505 | None:intergenic | 50.0% | |
| ! | AAATCTGGGACATCAGCCCA+TGG | + | chr4_3:65688942-65688961 | None:intergenic | 50.0% |
| AGGTTCACAAGTCAGGTCGT+GGG | + | chr4_3:65689406-65689425 | None:intergenic | 50.0% | |
| TAGGTTCACAAGTCAGGTCG+TGG | + | chr4_3:65689407-65689426 | None:intergenic | 50.0% | |
| !! | CTAGCTCTGAACTTTGTCGG+AGG | + | chr4_3:65689485-65689504 | None:intergenic | 50.0% |
| TTCGCCCTTGGGTACAAATG+AGG | - | chr4_3:65689685-65689704 | Msa0656410:intron | 50.0% | |
| AGCGGCAGCTAAGGTTGTTA+AGG | - | chr4_3:65689769-65689788 | Msa0656410:intron | 50.0% | |
| GCGGCAGCTAAGGTTGTTAA+GGG | - | chr4_3:65689770-65689789 | Msa0656410:intron | 50.0% | |
| CTAGCAGAGACAGAAACCGA+AGG | - | chr4_3:65689938-65689957 | Msa0656410:intron | 50.0% | |
| !! | ACAGAAACCGAAGGTGTCCA+AGG | - | chr4_3:65689947-65689966 | Msa0656410:intron | 50.0% |
| CCTGAACTGCATCAACTCCT+TGG | + | chr4_3:65689967-65689986 | None:intergenic | 50.0% | |
| !! | CCAAGGAGTTGATGCAGTTC+AGG | - | chr4_3:65689964-65689983 | Msa0656410:intron | 50.0% |
| ACTGGAGTCCTCTTGTTCCA+GGG | - | chr4_3:65690032-65690051 | Msa0656410:intron | 50.0% | |
| AGCCTACATCTGCTGCAACA+TGG | - | chr4_3:65690208-65690227 | Msa0656410:intron | 50.0% | |
| TATGGGATACTCGTTTGGGG+AGG | - | chr4_3:65690468-65690487 | Msa0656410:intron | 50.0% | |
| TGTGCTTGAAAAGACGCAGC+TGG | + | chr4_3:65690497-65690516 | None:intergenic | 50.0% | |
| ! | GGCTAGTTGTATGTTGGCGT+CGG | - | chr4_3:65690640-65690659 | Msa0656410:intron | 50.0% |
| GCTAGTTGTATGTTGGCGTC+GGG | - | chr4_3:65690641-65690660 | Msa0656410:intron | 50.0% | |
| TTCGTGTGGACTCCACTCAA+TGG | + | chr4_3:65691242-65691261 | None:intergenic | 50.0% | |
| GCCAATGAAGAAGCTTCGTG+TGG | + | chr4_3:65691256-65691275 | None:intergenic | 50.0% | |
| CATTGGCACACACAGATTCC+TGG | - | chr4_3:65691989-65692008 | Msa0656410:CDS | 50.0% | |
| TCATGCAGCTTCTGATGGCA+AGG | + | chr4_3:65692077-65692096 | None:intergenic | 50.0% | |
| GCAGATACTGCCTTGTAAGG+TGG | + | chr4_3:65692126-65692145 | None:intergenic | 50.0% | |
| GAGTGAATCATCTTCGGCGG+CGG | - | chr4_3:65686922-65686941 | Msa0656410:CDS | 55.0% | |
| ! | CCGGTAAAAGTGTGGCAACC+TGG | - | chr4_3:65686962-65686981 | Msa0656410:CDS | 55.0% |
| CCCAGGCTGAGAAACCTTCT+TGG | - | chr4_3:65688083-65688102 | Msa0656410:intron | 55.0% | |
| ! | TTCTGGGAAGAGACGTGAGC+TGG | - | chr4_3:65688138-65688157 | Msa0656410:intron | 55.0% |
| GACGAAGAAGAAGGTGGTGC+CGG | - | chr4_3:65688229-65688248 | Msa0656410:intron | 55.0% | |
| GGCAGAATCTGGTCATGTGC+AGG | - | chr4_3:65688446-65688465 | Msa0656410:CDS | 55.0% | |
| TCTGCGGTTCCACAACAGGT+CGG | - | chr4_3:65689450-65689469 | Msa0656410:intron | 55.0% | |
| GACTGGAGTCCTCTTGTTCC+AGG | - | chr4_3:65690031-65690050 | Msa0656410:intron | 55.0% | |
| ACAAGCCTCCCTGGAACAAG+AGG | + | chr4_3:65690043-65690062 | None:intergenic | 55.0% | |
| GTTCCAGGGAGGCTTGTATC+CGG | - | chr4_3:65690046-65690065 | Msa0656410:intron | 55.0% | |
| TTACCGGATACAAGCCTCCC+TGG | + | chr4_3:65690052-65690071 | None:intergenic | 55.0% | |
| TCTGTAGGGCTCCACTGCAA+GGG | + | chr4_3:65690404-65690423 | None:intergenic | 55.0% | |
| TTCTGTAGGGCTCCACTGCA+AGG | + | chr4_3:65690405-65690424 | None:intergenic | 55.0% | |
| ! | TTGGCGTCGGGTAGTGATGA+TGG | - | chr4_3:65690653-65690672 | Msa0656410:intron | 55.0% |
| ! | TGGCGTCGGGTAGTGATGAT+GGG | - | chr4_3:65690654-65690673 | Msa0656410:intron | 55.0% |
| GGAAAAGGACGAGGAAGAGG+AGG | - | chr4_3:65691532-65691551 | Msa0656410:intron | 55.0% | |
| AGTTGGGGAGGCAGATCTTC+AGG | + | chr4_3:65691596-65691615 | None:intergenic | 55.0% | |
| TGAATCATCTTCGGCGGCGG+CGG | - | chr4_3:65686925-65686944 | Msa0656410:CDS | 60.0% | |
| ! | GAAGAAGAAGGTGGTGCCGG+TGG | - | chr4_3:65688232-65688251 | Msa0656410:intron | 60.0% |
| TGCCGGTGGTCCTACTTTGC+AGG | - | chr4_3:65688246-65688265 | Msa0656410:intron | 60.0% | |
| CTGCGGTTCCACAACAGGTC+GGG | - | chr4_3:65689451-65689470 | Msa0656410:intron | 60.0% | |
| GGAGTCCTCTTGTTCCAGGG+AGG | - | chr4_3:65690035-65690054 | Msa0656410:intron | 60.0% | |
| ATCATCTTCGGCGGCGGCGG+CGG | - | chr4_3:65686928-65686947 | Msa0656410:CDS | 70.0% | |
| ! | GGCGGCGGCGCCACAGGTTC+CGG | - | chr4_3:65686943-65686962 | Msa0656410:CDS | 80.0% |
| ! | GGCGGCGGCGGCGGCGCCAC+AGG | - | chr4_3:65686937-65686956 | Msa0656410:CDS | 95.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 65686522 | 65692473 | 65686522 | ID=Msa0656410;Name=Msa0656410 |
| chr4_3 | mRNA | 65686522 | 65692473 | 65686522 | ID=Msa0656410-mRNA-1;Parent=Msa0656410;Name=Msa0656410-mRNA-1;_AED=0.08;_eAED=0.08;_QI=112|1|1|1|0.91|0.84|13|377|470 |
| chr4_3 | exon | 65686522 | 65687030 | 65686522 | ID=Msa0656410-mRNA-1:exon:18718;Parent=Msa0656410-mRNA-1 |
| chr4_3 | exon | 65687364 | 65687481 | 65687364 | ID=Msa0656410-mRNA-1:exon:18717;Parent=Msa0656410-mRNA-1 |
| chr4_3 | exon | 65687693 | 65687808 | 65687693 | ID=Msa0656410-mRNA-1:exon:18716;Parent=Msa0656410-mRNA-1 |
| chr4_3 | exon | 65688286 | 65688358 | 65688286 | ID=Msa0656410-mRNA-1:exon:18715;Parent=Msa0656410-mRNA-1 |
| chr4_3 | exon | 65688446 | 65688585 | 65688446 | ID=Msa0656410-mRNA-1:exon:18714;Parent=Msa0656410-mRNA-1 |
| chr4_3 | exon | 65688711 | 65688817 | 65688711 | ID=Msa0656410-mRNA-1:exon:18713;Parent=Msa0656410-mRNA-1 |
| chr4_3 | exon | 65688928 | 65689087 | 65688928 | ID=Msa0656410-mRNA-1:exon:18712;Parent=Msa0656410-mRNA-1 |
| chr4_3 | exon | 65690528 | 65690626 | 65690528 | ID=Msa0656410-mRNA-1:exon:18711;Parent=Msa0656410-mRNA-1 |
| chr4_3 | exon | 65690728 | 65690907 | 65690728 | ID=Msa0656410-mRNA-1:exon:18710;Parent=Msa0656410-mRNA-1 |
| chr4_3 | exon | 65691287 | 65691365 | 65691287 | ID=Msa0656410-mRNA-1:exon:18709;Parent=Msa0656410-mRNA-1 |
| chr4_3 | exon | 65691918 | 65692078 | 65691918 | ID=Msa0656410-mRNA-1:exon:18708;Parent=Msa0656410-mRNA-1 |
| chr4_3 | exon | 65692187 | 65692252 | 65692187 | ID=Msa0656410-mRNA-1:exon:18707;Parent=Msa0656410-mRNA-1 |
| chr4_3 | exon | 65692380 | 65692473 | 65692380 | ID=Msa0656410-mRNA-1:exon:18706;Parent=Msa0656410-mRNA-1 |
| chr4_3 | five_prime_UTR | 65692380 | 65692473 | 65692380 | ID=Msa0656410-mRNA-1:five_prime_utr;Parent=Msa0656410-mRNA-1 |
| chr4_3 | five_prime_UTR | 65692235 | 65692252 | 65692235 | ID=Msa0656410-mRNA-1:five_prime_utr;Parent=Msa0656410-mRNA-1 |
| chr4_3 | CDS | 65692187 | 65692234 | 65692187 | ID=Msa0656410-mRNA-1:cds;Parent=Msa0656410-mRNA-1 |
| chr4_3 | CDS | 65691918 | 65692078 | 65691918 | ID=Msa0656410-mRNA-1:cds;Parent=Msa0656410-mRNA-1 |
| chr4_3 | CDS | 65691287 | 65691365 | 65691287 | ID=Msa0656410-mRNA-1:cds;Parent=Msa0656410-mRNA-1 |
| chr4_3 | CDS | 65690728 | 65690907 | 65690728 | ID=Msa0656410-mRNA-1:cds;Parent=Msa0656410-mRNA-1 |
| chr4_3 | CDS | 65690528 | 65690626 | 65690528 | ID=Msa0656410-mRNA-1:cds;Parent=Msa0656410-mRNA-1 |
| chr4_3 | CDS | 65688928 | 65689087 | 65688928 | ID=Msa0656410-mRNA-1:cds;Parent=Msa0656410-mRNA-1 |
| chr4_3 | CDS | 65688711 | 65688817 | 65688711 | ID=Msa0656410-mRNA-1:cds;Parent=Msa0656410-mRNA-1 |
| chr4_3 | CDS | 65688446 | 65688585 | 65688446 | ID=Msa0656410-mRNA-1:cds;Parent=Msa0656410-mRNA-1 |
| chr4_3 | CDS | 65688286 | 65688358 | 65688286 | ID=Msa0656410-mRNA-1:cds;Parent=Msa0656410-mRNA-1 |
| chr4_3 | CDS | 65687693 | 65687808 | 65687693 | ID=Msa0656410-mRNA-1:cds;Parent=Msa0656410-mRNA-1 |
| chr4_3 | CDS | 65687364 | 65687481 | 65687364 | ID=Msa0656410-mRNA-1:cds;Parent=Msa0656410-mRNA-1 |
| chr4_3 | CDS | 65686899 | 65687030 | 65686899 | ID=Msa0656410-mRNA-1:cds;Parent=Msa0656410-mRNA-1 |
| chr4_3 | three_prime_UTR | 65686522 | 65686898 | 65686522 | ID=Msa0656410-mRNA-1:three_prime_utr;Parent=Msa0656410-mRNA-1 |
| Gene Sequence |
| Protein sequence |
