Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0295880 | XP_013465818.1 | 98.119 | 319 | 4 | 1 | 1 | 319 | 1 | 317 | 0.0 | 646 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0295880 | sp|Q9LE16|BRX11_ARATH | 79.062 | 320 | 60 | 3 | 1 | 319 | 1 | 314 | 0.0 | 523 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0295880 | A0A072VCY8 | 98.119 | 319 | 4 | 1 | 1 | 319 | 1 | 317 | 0.0 | 646 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0044990 | Msa0295880 | 0.801152 | 1.030387e-48 | -8.615850e-47 |
| Msa0114570 | Msa0295880 | 0.815040 | 1.133293e-51 | -8.615850e-47 |
| Msa0172930 | Msa0295880 | 0.809186 | 2.142938e-50 | -8.615850e-47 |
| Msa0295880 | Msa0334140 | 0.851767 | 7.161660e-61 | -8.615850e-47 |
| Msa0295880 | Msa0550420 | 0.827582 | 1.445123e-54 | -8.615850e-47 |
| Msa0295880 | Msa0617540 | 0.813656 | 2.292263e-51 | -8.615850e-47 |
| Msa0295880 | Msa1037290 | 0.803822 | 2.901800e-49 | -8.615850e-47 |
| Msa0295880 | Msa1368920 | 0.803122 | 4.053380e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0295880 | MtrunA17_Chr1g0149671 | 98.119 | 319 | 4 | 1 | 1 | 319 | 1 | 317 | 0.0 | 646 |
| Msa0295880 | MtrunA17_Chr7g0242911 | 97.179 | 319 | 5 | 1 | 1 | 319 | 1 | 315 | 0.0 | 638 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0295880 | AT3G15460.1 | 79.062 | 320 | 60 | 3 | 1 | 319 | 1 | 314 | 0.0 | 523 |
| Msa0295880 | AT1G52930.1 | 78.125 | 320 | 67 | 2 | 1 | 319 | 1 | 318 | 0.0 | 504 |
Find 111 sgRNAs with CRISPR-Local
Find 306 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTCTCTTCCCCATGTTATT+TGG | 0.215344 | 2_3:-48705419 | None:intergenic |
| GCTCTAGGCGTATTGTTTAT+AGG | 0.224171 | 2_3:+48705618 | Msa0295880:CDS |
| GCTATATTTATATTCTTATA+TGG | 0.238642 | 2_3:+48709361 | Msa0295880:three_prime_UTR |
| CACCATTCTTGTCGAATATA+AGG | 0.275783 | 2_3:-48709092 | None:intergenic |
| CAATTGTTGATGACCATATA+TGG | 0.275985 | 2_3:+48707670 | Msa0295880:CDS |
| AAAATATTCGGTGGCAGTTT+TGG | 0.276214 | 2_3:+48708735 | Msa0295880:CDS |
| ACTGCACTCTCTCTGGTGTT+GGG | 0.287267 | 2_3:+48704048 | Msa0295880:five_prime_UTR |
| CGCTTTGCAGAAGAAGAAAA+AGG | 0.301141 | 2_3:+48708916 | Msa0295880:CDS |
| ATGGAGGAATTGAAGCTTAC+TGG | 0.304877 | 2_3:+48707010 | Msa0295880:CDS |
| TGGTTTGGCGACACATATAA+TGG | 0.307289 | 2_3:-48708780 | None:intergenic |
| ACATGTTCAATTGGAGATAT+AGG | 0.307396 | 2_3:+48709187 | Msa0295880:three_prime_UTR |
| GTTGGCAGTCCATTCTTTGT+AGG | 0.311442 | 2_3:+48709122 | Msa0295880:three_prime_UTR |
| GAGACCAGTGAGGACCCTTT+TGG | 0.316595 | 2_3:+48705499 | Msa0295880:CDS |
| GGTAATTTCGGAACCATATA+TGG | 0.326418 | 2_3:-48707683 | None:intergenic |
| TGCATACTGGAAACTGTTAA+AGG | 0.335855 | 2_3:+48707090 | Msa0295880:CDS |
| AGACACAAACCTGGTAATTT+CGG | 0.336053 | 2_3:-48707695 | None:intergenic |
| TGGGTTTATCTTTAATTTAA+CGG | 0.337186 | 2_3:-48703945 | None:intergenic |
| TTGAATCCAATTAAAATATT+CGG | 0.338246 | 2_3:+48708723 | Msa0295880:CDS |
| TATTTATTGCAGAGTTAAAT+CGG | 0.349157 | 2_3:-48703972 | None:intergenic |
| TGAGAATGAAGTCGAGGTTA+AGG | 0.351881 | 2_3:+48705544 | Msa0295880:CDS |
| CACTGCACTCTCTCTGGTGT+TGG | 0.353004 | 2_3:+48704047 | Msa0295880:five_prime_UTR |
| GTTAAAGGAGATGCTGTTAC+AGG | 0.353959 | 2_3:+48707105 | Msa0295880:CDS |
| TTCTCTTTGTTCCTGAATAC+AGG | 0.355373 | 2_3:-48705581 | None:intergenic |
| ATGGTGCTTCACCTGTATTC+AGG | 0.357859 | 2_3:+48705570 | Msa0295880:CDS |
| TTCATTTATACATGTTCAAT+TGG | 0.358064 | 2_3:+48709178 | Msa0295880:three_prime_UTR |
| GCTTCTGCCTCATTGCAAAA+AGG | 0.366733 | 2_3:+48706157 | Msa0295880:CDS |
| CTTACTGGGAATCACCTAAA+AGG | 0.369692 | 2_3:+48707025 | Msa0295880:CDS |
| AGGGTCCTCACTGGTCTCTC+TGG | 0.383639 | 2_3:-48705494 | None:intergenic |
| GGAAAGGCTTAGCCTTTCTA+TGG | 0.386528 | 2_3:-48707626 | None:intergenic |
| ATAATGGTCATTACCTGGTT+TGG | 0.399636 | 2_3:-48708795 | None:intergenic |
| CAGGAACAAAGAGAAAGTTT+TGG | 0.404050 | 2_3:+48705589 | Msa0295880:CDS |
| AATTTAACAGACGGACCGTT+GGG | 0.405139 | 2_3:-48706781 | None:intergenic |
| TTGGCAGTCCATTCTTTGTA+GGG | 0.408214 | 2_3:+48709123 | Msa0295880:three_prime_UTR |
| CCATTCCACTGCACTCTCTC+TGG | 0.409561 | 2_3:+48704041 | Msa0295880:five_prime_UTR |
| AGCTGTGGCTGTGCCCAAAA+AGG | 0.410300 | 2_3:+48705460 | Msa0295880:CDS |
| CACATATCTGCAAACTCATC+AGG | 0.414305 | 2_3:-48709010 | None:intergenic |
| TTAGCCTTTCTATGGTCCTT+CGG | 0.432964 | 2_3:-48707618 | None:intergenic |
| GAGCTCAACAAGCTCGTTCA+AGG | 0.438472 | 2_3:-48706216 | None:intergenic |
| GGCTGGAACATTTGCAAAGA+AGG | 0.442018 | 2_3:+48708937 | Msa0295880:CDS |
| AATGGATTCTCATATAAAGT+TGG | 0.442109 | 2_3:-48708762 | None:intergenic |
| GAAGTGAAGAAGCTAACCTT+AGG | 0.445240 | 2_3:-48704019 | None:intergenic |
| TCTTATCCTTCCATCCCAAA+AGG | 0.448553 | 2_3:-48705514 | None:intergenic |
| AAATAAGCTGGTTATGTTCA+AGG | 0.453360 | 2_3:-48709455 | None:intergenic |
| TCTGAGATCACCGTCACAAC+AGG | 0.462455 | 2_3:+48704074 | Msa0295880:five_prime_UTR |
| ATCATAGTATCATAGTTTGA+TGG | 0.462877 | 2_3:-48709232 | None:intergenic |
| GCATGAGATGGCCAATCCTC+TGG | 0.463080 | 2_3:+48708985 | Msa0295880:CDS |
| ATGGATTCTCATATAAAGTT+GGG | 0.466075 | 2_3:-48708761 | None:intergenic |
| CTGCACTCTCTCTGGTGTTG+GGG | 0.469674 | 2_3:+48704049 | Msa0295880:five_prime_UTR |
| AGGCAAAAGATCTTTATCTC+TGG | 0.470351 | 2_3:+48706746 | Msa0295880:CDS |
| CATTTCACTAAAACTAAGAA+TGG | 0.471289 | 2_3:+48709061 | Msa0295880:three_prime_UTR |
| TGCAGAGTTAAATCGGGTCG+TGG | 0.478404 | 2_3:-48703965 | None:intergenic |
| TGATAAAATGACATTGATTG+AGG | 0.479641 | 2_3:+48708599 | Msa0295880:CDS |
| GCATAAGCCAAGTCAATCTC+AGG | 0.486472 | 2_3:-48709432 | None:intergenic |
| CTCATCAGGCTCCAGAGGAT+TGG | 0.500537 | 2_3:-48708996 | None:intergenic |
| CCGACATTTGATGTTGAACC+TGG | 0.503744 | 2_3:+48706130 | Msa0295880:CDS |
| GTAGTAGTGTTTAGCAGAGA+AGG | 0.507024 | 2_3:+48709396 | Msa0295880:three_prime_UTR |
| ATTTATTGCAGAGTTAAATC+GGG | 0.508846 | 2_3:-48703971 | None:intergenic |
| TGATTTGTAGCCAAATAACA+TGG | 0.511138 | 2_3:+48705409 | Msa0295880:intron |
| TTTGATGAAAATGTCAAAAG+AGG | 0.513130 | 2_3:-48707055 | None:intergenic |
| CCAGAGAGAGTGCAGTGGAA+TGG | 0.515643 | 2_3:-48704041 | None:intergenic |
| CACCTTATATTCGACAAGAA+TGG | 0.516175 | 2_3:+48709090 | Msa0295880:three_prime_UTR |
| TATATGGTTCCGAAATTACC+AGG | 0.519157 | 2_3:+48707686 | Msa0295880:CDS |
| TGGAGGAATTGAAGCTTACT+GGG | 0.524362 | 2_3:+48707011 | Msa0295880:CDS |
| CTAACCTTAGGGTTCTTTCG+AGG | 0.527740 | 2_3:-48704007 | None:intergenic |
| CTTATCCTTCCATCCCAAAA+GGG | 0.530204 | 2_3:-48705513 | None:intergenic |
| TCATAGTATCATAGTTTGAT+GGG | 0.532574 | 2_3:-48709231 | None:intergenic |
| AAAGATTAATGGGCCTATGC+GGG | 0.533247 | 2_3:+48703917 | Msa0295880:five_prime_UTR |
| AATAAGCTGGTTATGTTCAA+GGG | 0.536671 | 2_3:-48709454 | None:intergenic |
| ATTATATGTGTCGCCAAACC+AGG | 0.539453 | 2_3:+48708782 | Msa0295880:CDS |
| AAATTTAACAGACGGACCGT+TGG | 0.547683 | 2_3:-48706782 | None:intergenic |
| TGGCAGTCCATTCTTTGTAG+GGG | 0.549352 | 2_3:+48709124 | Msa0295880:three_prime_UTR |
| AATGAGGCAGAAGCGATACC+AGG | 0.551260 | 2_3:-48706148 | None:intergenic |
| CATCCCAAAAGGGTCCTCAC+TGG | 0.551306 | 2_3:-48705503 | None:intergenic |
| GAAGTCGAGGTTAAGGAGAA+TGG | 0.558717 | 2_3:+48705551 | Msa0295880:CDS |
| GAAGAGAAAACGAAGCGAAA+AGG | 0.560289 | 2_3:+48705433 | Msa0295880:CDS |
| AAAAGATCTTTATCTCTGGA+TGG | 0.569362 | 2_3:+48706750 | Msa0295880:CDS |
| GTTGAATCGAAAGAAACTAA+AGG | 0.577805 | 2_3:+48706188 | Msa0295880:CDS |
| TTGATGAAAATGTCAAAAGA+GGG | 0.581244 | 2_3:-48707054 | None:intergenic |
| AATCCAATTAAAATATTCGG+TGG | 0.581638 | 2_3:+48708726 | Msa0295880:CDS |
| GCAAACTCATCAGGCTCCAG+AGG | 0.583650 | 2_3:-48709001 | None:intergenic |
| TTTAACGGAAATGCCCGCAT+AGG | 0.584749 | 2_3:-48703930 | None:intergenic |
| AAGTGAAGAAGCTAACCTTA+GGG | 0.585753 | 2_3:-48704018 | None:intergenic |
| AAGGAGGAAAATGCATGAGA+TGG | 0.589573 | 2_3:+48708973 | Msa0295880:CDS |
| GCAGAGTTAAATCGGGTCGT+GGG | 0.590717 | 2_3:-48703964 | None:intergenic |
| AACTCCGAAGGACCATAGAA+AGG | 0.592135 | 2_3:+48707614 | Msa0295880:CDS |
| TGAAAATGTCAAAAGAGGGC+GGG | 0.598198 | 2_3:-48707050 | None:intergenic |
| TACTTGTTTAGGTTGGTCCA+CGG | 0.602021 | 2_3:+48708694 | Msa0295880:intron |
| CTGATGAGTTTGCAGATATG+TGG | 0.604261 | 2_3:+48709011 | Msa0295880:CDS |
| GATTTGTAGCCAAATAACAT+GGG | 0.607660 | 2_3:+48705410 | Msa0295880:intron |
| AAAAGATTAATGGGCCTATG+CGG | 0.609738 | 2_3:+48703916 | Msa0295880:five_prime_UTR |
| AAGCGAAAAGGCTGAAGCTG+TGG | 0.609947 | 2_3:+48705445 | Msa0295880:CDS |
| AGAAGGTCAAAGCAAAGACA+AGG | 0.616949 | 2_3:+48708954 | Msa0295880:CDS |
| TTTAACTCTGCAATAAATAG+CGG | 0.617711 | 2_3:+48703976 | Msa0295880:five_prime_UTR |
| AATTTGTCTGACTCATTGTG+AGG | 0.622655 | 2_3:-48708561 | None:intergenic |
| TGAAAATGAGAATGAAGTCG+AGG | 0.626692 | 2_3:+48705538 | Msa0295880:CDS |
| ATTGGATTCAAGCAGAACCG+TGG | 0.628585 | 2_3:-48708711 | None:intergenic |
| ATGAAAATGTCAAAAGAGGG+CGG | 0.629935 | 2_3:-48707051 | None:intergenic |
| AGGTCAAAGCAAAGACAAGG+AGG | 0.640567 | 2_3:+48708957 | Msa0295880:CDS |
| AGATCCTCGAAAGAACCCTA+AGG | 0.644102 | 2_3:+48704003 | Msa0295880:five_prime_UTR |
| AATATACAGTATAAGTAAGG+CGG | 0.644721 | 2_3:-48709335 | None:intergenic |
| ATTTGTAGCCAAATAACATG+GGG | 0.646994 | 2_3:+48705411 | Msa0295880:intron |
| TGGATGGCAAAATGCCCCAA+CGG | 0.651109 | 2_3:+48706766 | Msa0295880:CDS |
| ATGTGAATTTCAGTGCAGGA+AGG | 0.660599 | 2_3:+48706726 | Msa0295880:intron |
| CCAGGTTCAACATCAAATGT+CGG | 0.661077 | 2_3:-48706130 | None:intergenic |
| TACAGTATAAGTAAGGCGGT+AGG | 0.661796 | 2_3:-48709331 | None:intergenic |
| ATTTAACAGACGGACCGTTG+GGG | 0.668767 | 2_3:-48706780 | None:intergenic |
| GAAATGAATACCTGTTGTGA+CGG | 0.682631 | 2_3:-48704084 | None:intergenic |
| CTCAACAAGCTCGTTCAAGG+TGG | 0.692925 | 2_3:-48706213 | None:intergenic |
| CAACACCAGAGAGAGTGCAG+TGG | 0.711326 | 2_3:-48704046 | None:intergenic |
| TTGCTCCAGAGAGACCAGTG+AGG | 0.749614 | 2_3:+48705489 | Msa0295880:CDS |
| GAGTCAGACAAATTACCCCG+AGG | 0.769107 | 2_3:+48708570 | Msa0295880:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTAATTGTTTAATTTTCT+AGG | + | chr2_3:48704454-48704473 | Msa0295880:intron | 10.0% |
| !!! | ATTTTAAAAGTATTTTATTG+AGG | - | chr2_3:48704577-48704596 | None:intergenic | 10.0% |
| !! | AAAATTAAATTAATGTCAAA+TGG | + | chr2_3:48705806-48705825 | Msa0295880:intron | 10.0% |
| !!! | TTATTTAATTATTGTTTTTC+TGG | + | chr2_3:48709301-48709320 | Msa0295880:three_prime_UTR | 10.0% |
| !! | ATTTATTGTACAAATTTATG+AGG | + | chr2_3:48704266-48704285 | Msa0295880:intron | 15.0% |
| !!! | TAAAATTTTAAAGTACTTTG+CGG | - | chr2_3:48704359-48704378 | None:intergenic | 15.0% |
| !! | GTAAAATAAAAAATTACTCA+TGG | - | chr2_3:48704409-48704428 | None:intergenic | 15.0% |
| !! | ATTAATATGTCAACATTTAA+CGG | - | chr2_3:48704723-48704742 | None:intergenic | 15.0% |
| !!! | AGTGTTATTAAATTTTAACA+AGG | - | chr2_3:48704765-48704784 | None:intergenic | 15.0% |
| !! | TTGTTAAAATTTAATAACAC+TGG | + | chr2_3:48704764-48704783 | Msa0295880:intron | 15.0% |
| !! | TATATACATATGATTATTGA+AGG | + | chr2_3:48704848-48704867 | Msa0295880:intron | 15.0% |
| !! | AAATACAGCAAAATATATTT+GGG | - | chr2_3:48705658-48705677 | None:intergenic | 15.0% |
| !! | ATTGATCATAAACTTATTAT+AGG | + | chr2_3:48706105-48706124 | Msa0295880:intron | 15.0% |
| !!! | GATTATTTTTTATGACATTA+AGG | + | chr2_3:48706280-48706299 | Msa0295880:intron | 15.0% |
| !!! | CTACACTTTAAAATTTAAAA+TGG | - | chr2_3:48706515-48706534 | None:intergenic | 15.0% |
| !! | AATAATATATAATCATAGCA+AGG | - | chr2_3:48706871-48706890 | None:intergenic | 15.0% |
| !!! | TAATGCTTTAAAAATTTGAA+AGG | - | chr2_3:48707977-48707996 | None:intergenic | 15.0% |
| !!! | TTGGTTATTTTTTAATGTAT+AGG | + | chr2_3:48708375-48708394 | Msa0295880:intron | 15.0% |
| !! | TTGAATCCAATTAAAATATT+CGG | + | chr2_3:48708723-48708742 | Msa0295880:CDS | 15.0% |
| !!! | TTATTTTCAGAAGAAAATTA+CGG | - | chr2_3:48708845-48708864 | None:intergenic | 15.0% |
| !! | AAAAATATACAGTATAAGTA+AGG | - | chr2_3:48709341-48709360 | None:intergenic | 15.0% |
| !! | GCTATATTTATATTCTTATA+TGG | + | chr2_3:48709361-48709380 | Msa0295880:three_prime_UTR | 15.0% |
| !! | AGGAGTAATAAAAAGATTAA+TGG | + | chr2_3:48703906-48703925 | Msa0295880:five_prime_UTR | 20.0% |
| !! | GGAGTAATAAAAAGATTAAT+GGG | + | chr2_3:48703907-48703926 | Msa0295880:five_prime_UTR | 20.0% |
| !!! | TGGGTTTATCTTTAATTTAA+CGG | - | chr2_3:48703948-48703967 | None:intergenic | 20.0% |
| !! | TATTTATTGCAGAGTTAAAT+CGG | - | chr2_3:48703975-48703994 | None:intergenic | 20.0% |
| !!! | AAAATTTTAAAGTACTTTGC+GGG | - | chr2_3:48704358-48704377 | None:intergenic | 20.0% |
| !!! | ATCGTTTTAAAGTAAAAACA+AGG | - | chr2_3:48704528-48704547 | None:intergenic | 20.0% |
| !! | AATTTAATAACACTGGATAT+AGG | + | chr2_3:48704771-48704790 | Msa0295880:intron | 20.0% |
| !! | GAATTGTTATATTTGTATTG+AGG | + | chr2_3:48704813-48704832 | Msa0295880:intron | 20.0% |
| !! | TAAAATAATTCAAACCAAAC+AGG | + | chr2_3:48705233-48705252 | Msa0295880:intron | 20.0% |
| !! | GTGCATAAAAATTAAACTTT+GGG | - | chr2_3:48705259-48705278 | None:intergenic | 20.0% |
| !! | AGTGCATAAAAATTAAACTT+TGG | - | chr2_3:48705260-48705279 | None:intergenic | 20.0% |
| !!! | AAAATATATTTGGGTTTTGT+GGG | - | chr2_3:48705649-48705668 | None:intergenic | 20.0% |
| !! | CAAATACAGCAAAATATATT+TGG | - | chr2_3:48705659-48705678 | None:intergenic | 20.0% |
| !!! | TTCTTCATGTTTATTTTTTG+AGG | + | chr2_3:48706247-48706266 | Msa0295880:CDS | 20.0% |
| !! | TGTCATAAAAAATAATCGAA+AGG | - | chr2_3:48706277-48706296 | None:intergenic | 20.0% |
| !! | CAGTTTACTTAATTTAAATC+TGG | + | chr2_3:48706589-48706608 | Msa0295880:intron | 20.0% |
| !! | TTTACTTAATTTAAATCTGG+CGG | + | chr2_3:48706592-48706611 | Msa0295880:intron | 20.0% |
| !! | CTAACTAAAAATTTAACAGA+CGG | - | chr2_3:48706793-48706812 | None:intergenic | 20.0% |
| !! | GCTATGATTATATATTATTC+TGG | + | chr2_3:48706872-48706891 | Msa0295880:intron | 20.0% |
| !! | AAAAGAGAAATTAGTAAGAT+GGG | - | chr2_3:48706964-48706983 | None:intergenic | 20.0% |
| !! | TAAAAGAGAAATTAGTAAGA+TGG | - | chr2_3:48706965-48706984 | None:intergenic | 20.0% |
| !! | AGTTCTATAAATGTTATGTT+TGG | + | chr2_3:48707360-48707379 | Msa0295880:intron | 20.0% |
| !!! | TTTTTAAAGCATTATCCTTT+TGG | + | chr2_3:48707983-48708002 | Msa0295880:intron | 20.0% |
| !!! | TTTTAAAGCATTATCCTTTT+GGG | + | chr2_3:48707984-48708003 | Msa0295880:intron | 20.0% |
| !!! | ATTGATAGTATATAAGGTTT+TGG | - | chr2_3:48708125-48708144 | None:intergenic | 20.0% |
| !!! | TTCTTCATTGATAGTATATA+AGG | - | chr2_3:48708131-48708150 | None:intergenic | 20.0% |
| !!! | AAGTAATGATTGTTTTACTA+TGG | + | chr2_3:48708149-48708168 | Msa0295880:intron | 20.0% |
| !!! | ACATCAGTTAAATGAATTTT+AGG | - | chr2_3:48708666-48708685 | None:intergenic | 20.0% |
| !!! | TTCTGAAAATAACTTCATAT+TGG | + | chr2_3:48708853-48708872 | Msa0295880:intron | 20.0% |
| !! | TTCATTTATACATGTTCAAT+TGG | + | chr2_3:48709178-48709197 | Msa0295880:three_prime_UTR | 20.0% |
| ! | ATTTATTGCAGAGTTAAATC+GGG | - | chr2_3:48703974-48703993 | None:intergenic | 25.0% |
| ! | TTTAACTCTGCAATAAATAG+CGG | + | chr2_3:48703976-48703995 | Msa0295880:five_prime_UTR | 25.0% |
| ! | AAAATTTAAAGGAACGCATA+TGG | - | chr2_3:48704330-48704349 | None:intergenic | 25.0% |
| !!! | TGCGGGTTTTTAAAATTTAA+AGG | - | chr2_3:48704341-48704360 | None:intergenic | 25.0% |
| !!! | CTATTTGTAAGCTATTTCTA+TGG | + | chr2_3:48705048-48705067 | Msa0295880:intron | 25.0% |
| !!! | CAAAATATATTTGGGTTTTG+TGG | - | chr2_3:48705650-48705669 | None:intergenic | 25.0% |
| !!! | TTGTTTATTTTGGCTATGTT+TGG | + | chr2_3:48705708-48705727 | Msa0295880:intron | 25.0% |
| ! | TAATAGCTTAACTAAGTTGT+TGG | - | chr2_3:48705734-48705753 | None:intergenic | 25.0% |
| !! | ATTCTTTTACTGCACATAAA+GGG | - | chr2_3:48706000-48706019 | None:intergenic | 25.0% |
| !! | AATTCTTTTACTGCACATAA+AGG | - | chr2_3:48706001-48706020 | None:intergenic | 25.0% |
| !! | AAAACTTCTTCCTTTTATTG+CGG | + | chr2_3:48706060-48706079 | Msa0295880:intron | 25.0% |
| ! | GAAAATTCACTGTTTGTTTA+TGG | + | chr2_3:48706361-48706380 | Msa0295880:intron | 25.0% |
| ! | CAACAACATTTGTAACAAAA+TGG | - | chr2_3:48706401-48706420 | None:intergenic | 25.0% |
| !! | CATTTTGTTACAAATGTTGT+TGG | + | chr2_3:48706399-48706418 | Msa0295880:intron | 25.0% |
| ! | ATACATAGAAAAGCCAATTT+GGG | - | chr2_3:48706564-48706583 | None:intergenic | 25.0% |
| ! | AATACATAGAAAAGCCAATT+TGG | - | chr2_3:48706565-48706584 | None:intergenic | 25.0% |
| ! | AACTCAAACTTGAGATTAAA+TGG | - | chr2_3:48706633-48706652 | None:intergenic | 25.0% |
| !!! | GTTAAATTTTTAGTTAGTGC+CGG | + | chr2_3:48706796-48706815 | Msa0295880:CDS | 25.0% |
| ! | TATAATCATAGCAAGGAAAT+TGG | - | chr2_3:48706864-48706883 | None:intergenic | 25.0% |
| ! | CAAAAAGAAGAATAAAGAAC+TGG | - | chr2_3:48706908-48706927 | None:intergenic | 25.0% |
| ! | TTGATGAAAATGTCAAAAGA+GGG | - | chr2_3:48707057-48707076 | None:intergenic | 25.0% |
| ! | TTTGATGAAAATGTCAAAAG+AGG | - | chr2_3:48707058-48707077 | None:intergenic | 25.0% |
| !!! | ATTTTGAAAAAGATGCATAC+TGG | + | chr2_3:48707077-48707096 | Msa0295880:CDS | 25.0% |
| !!! | TGTTTTGGATTCAAAAGTTA+AGG | + | chr2_3:48707156-48707175 | Msa0295880:intron | 25.0% |
| !! | TTGATAATACGATCTTAGTT+TGG | + | chr2_3:48707184-48707203 | Msa0295880:intron | 25.0% |
| ! | AATTTAAATTGAGCAGAATG+TGG | + | chr2_3:48707400-48707419 | Msa0295880:intron | 25.0% |
| ! | ATTTAAATTGAGCAGAATGT+GGG | + | chr2_3:48707401-48707420 | Msa0295880:intron | 25.0% |
| !!! | TTCACAATTTTCTCTAGTTT+TGG | + | chr2_3:48707441-48707460 | Msa0295880:intron | 25.0% |
| ! | CTGAGTTATGTATTTGAATA+GGG | + | chr2_3:48707473-48707492 | Msa0295880:intron | 25.0% |
| ! | TGAGTTATGTATTTGAATAG+GGG | + | chr2_3:48707474-48707493 | Msa0295880:intron | 25.0% |
| !!! | GTTTAAACTTTAAAATCCGT+TGG | + | chr2_3:48707779-48707798 | Msa0295880:intron | 25.0% |
| !! | TATAATTATGCCAGTTGTTT+TGG | + | chr2_3:48707855-48707874 | Msa0295880:intron | 25.0% |
| ! | TTCACTCAAGTAAAAAACTA+TGG | - | chr2_3:48707885-48707904 | None:intergenic | 25.0% |
| ! | ATACTAAAGCCTATTTGTAA+AGG | - | chr2_3:48708012-48708031 | None:intergenic | 25.0% |
| !! | TCGTGATATCATATTTCTAT+TGG | - | chr2_3:48708075-48708094 | None:intergenic | 25.0% |
| !! | TAATCCAGTGAACTTAATTT+TGG | + | chr2_3:48708356-48708375 | Msa0295880:intron | 25.0% |
| ! | ATAACCAAAATTAAGTTCAC+TGG | - | chr2_3:48708363-48708382 | None:intergenic | 25.0% |
| !!! | CAATCAATGTCATTTTATCA+AGG | - | chr2_3:48708599-48708618 | None:intergenic | 25.0% |
| !! | TGATAAAATGACATTGATTG+AGG | + | chr2_3:48708599-48708618 | Msa0295880:CDS | 25.0% |
| ! | AATCCAATTAAAATATTCGG+TGG | + | chr2_3:48708726-48708745 | Msa0295880:CDS | 25.0% |
| ! | ATGGATTCTCATATAAAGTT+GGG | - | chr2_3:48708764-48708783 | None:intergenic | 25.0% |
| !! | AATGGATTCTCATATAAAGT+TGG | - | chr2_3:48708765-48708784 | None:intergenic | 25.0% |
| !!! | TGTTTTTAACCTCTTTATGT+TGG | + | chr2_3:48708879-48708898 | Msa0295880:intron | 25.0% |
| !!! | TTCTTAGTTTTAGTGAAATG+AGG | - | chr2_3:48709061-48709080 | None:intergenic | 25.0% |
| ! | CATTTCACTAAAACTAAGAA+TGG | + | chr2_3:48709061-48709080 | Msa0295880:three_prime_UTR | 25.0% |
| ! | TCATAGTATCATAGTTTGAT+GGG | - | chr2_3:48709234-48709253 | None:intergenic | 25.0% |
| ! | ATCATAGTATCATAGTTTGA+TGG | - | chr2_3:48709235-48709254 | None:intergenic | 25.0% |
| ! | AATATACAGTATAAGTAAGG+CGG | - | chr2_3:48709338-48709357 | None:intergenic | 25.0% |
| ! | GATTAGTAGAAAAAATAAGC+TGG | - | chr2_3:48709470-48709489 | None:intergenic | 25.0% |
| ! | AAGAGTACATCGAATAACAT+TGG | - | chr2_3:48704436-48704455 | None:intergenic | 30.0% |
| !!! | GTGCAAGATTTTGATTAGAT+TGG | - | chr2_3:48704612-48704631 | None:intergenic | 30.0% |
| TACATCTCAAATCATTTCAG+CGG | + | chr2_3:48704651-48704670 | Msa0295880:intron | 30.0% | |
| TTAATAACACTGGATATAGG+TGG | + | chr2_3:48704774-48704793 | Msa0295880:intron | 30.0% | |
| TAATAACACTGGATATAGGT+GGG | + | chr2_3:48704775-48704794 | Msa0295880:intron | 30.0% | |
| ATAGGTGGGTGTTAAATTAT+AGG | + | chr2_3:48704789-48704808 | Msa0295880:intron | 30.0% | |
| TGTCTGATTATCAATTGTTC+AGG | + | chr2_3:48704882-48704901 | Msa0295880:intron | 30.0% | |
| TAAGCTGGTTATCTAAACAA+CGG | - | chr2_3:48705021-48705040 | None:intergenic | 30.0% | |
| !!! | GCTGTTTTAATAAGCTATCT+TGG | + | chr2_3:48705108-48705127 | Msa0295880:intron | 30.0% |
| GAGACTATTTGAAAGAACTT+AGG | - | chr2_3:48705188-48705207 | None:intergenic | 30.0% | |
| TAAAAAGTCACACACATGAT+TGG | - | chr2_3:48705302-48705321 | None:intergenic | 30.0% | |
| ! | TGATTTGTAGCCAAATAACA+TGG | + | chr2_3:48705409-48705428 | Msa0295880:intron | 30.0% |
| GATTTGTAGCCAAATAACAT+GGG | + | chr2_3:48705410-48705429 | Msa0295880:intron | 30.0% | |
| ATTTGTAGCCAAATAACATG+GGG | + | chr2_3:48705411-48705430 | Msa0295880:intron | 30.0% | |
| !!! | GTTTGTGTTTGTTTTGAGTT+CGG | + | chr2_3:48705683-48705702 | Msa0295880:intron | 30.0% |
| !! | GAGTTCGGATTTGTTTATTT+TGG | + | chr2_3:48705698-48705717 | Msa0295880:intron | 30.0% |
| AGTTAAGCTATTATGCTGTA+AGG | + | chr2_3:48705741-48705760 | Msa0295880:intron | 30.0% | |
| GTTAAGCTATTATGCTGTAA+GGG | + | chr2_3:48705742-48705761 | Msa0295880:intron | 30.0% | |
| AAGAAGCTGAAAACAGTTTA+TGG | + | chr2_3:48705883-48705902 | Msa0295880:intron | 30.0% | |
| AAACACTTGTAAGACTGTTT+GGG | - | chr2_3:48705938-48705957 | None:intergenic | 30.0% | |
| TAAACACTTGTAAGACTGTT+TGG | - | chr2_3:48705939-48705958 | None:intergenic | 30.0% | |
| ! | AAACTTCTTCCTTTTATTGC+GGG | + | chr2_3:48706061-48706080 | Msa0295880:intron | 30.0% |
| !!! | GGGTTATTGGTTTTTGATTA+TGG | + | chr2_3:48706081-48706100 | Msa0295880:intron | 30.0% |
| ! | TTGTTATCCTTTTTGCAATG+AGG | - | chr2_3:48706167-48706186 | None:intergenic | 30.0% |
| TCATTGCAAAAAGGATAACA+AGG | + | chr2_3:48706166-48706185 | Msa0295880:CDS | 30.0% | |
| GTTGAATCGAAAGAAACTAA+AGG | + | chr2_3:48706188-48706207 | Msa0295880:CDS | 30.0% | |
| AATCTCTTTCCTTTATGTGA+TGG | + | chr2_3:48706440-48706459 | Msa0295880:intron | 30.0% | |
| !! | TTCCTTTATGTGATGGATAA+TGG | + | chr2_3:48706447-48706466 | Msa0295880:intron | 30.0% |
| ATCCATTATCCATCACATAA+AGG | - | chr2_3:48706452-48706471 | None:intergenic | 30.0% | |
| ACTTGCTTAAGATTAAGAAC+AGG | - | chr2_3:48706656-48706675 | None:intergenic | 30.0% | |
| TCTAGTCTATTTGTGACATT+TGG | + | chr2_3:48706675-48706694 | Msa0295880:intron | 30.0% | |
| AAAAGATCTTTATCTCTGGA+TGG | + | chr2_3:48706750-48706769 | Msa0295880:CDS | 30.0% | |
| CAAACAGATGAGAATATTAC+CGG | - | chr2_3:48706818-48706837 | None:intergenic | 30.0% | |
| !! | CTCATCTGTTTGTTATCTTA+AGG | + | chr2_3:48706826-48706845 | Msa0295880:intron | 30.0% |
| ! | ATAATACGATCTTAGTTTGG+TGG | + | chr2_3:48707187-48707206 | Msa0295880:intron | 30.0% |
| TATAGAACTTCTCAAGTCAA+CGG | - | chr2_3:48707349-48707368 | None:intergenic | 30.0% | |
| AACTAGAGAAAATTGTGAAC+AGG | - | chr2_3:48707440-48707459 | None:intergenic | 30.0% | |
| CCTATTCAAATACATAACTC+AGG | - | chr2_3:48707475-48707494 | None:intergenic | 30.0% | |
| CCTGAGTTATGTATTTGAAT+AGG | + | chr2_3:48707472-48707491 | Msa0295880:intron | 30.0% | |
| CAATTGAGAAAACAAAAACG+TGG | - | chr2_3:48707656-48707675 | None:intergenic | 30.0% | |
| !! | CAATTGTTGATGACCATATA+TGG | + | chr2_3:48707670-48707689 | Msa0295880:CDS | 30.0% |
| TGTTGAAAACAACAAACCAA+CGG | - | chr2_3:48707798-48707817 | None:intergenic | 30.0% | |
| TATTTGTAAAGGAACCCAAA+AGG | - | chr2_3:48708001-48708020 | None:intergenic | 30.0% | |
| !!! | TTTTGGGTTCCTTTACAAAT+AGG | + | chr2_3:48708000-48708019 | Msa0295880:intron | 30.0% |
| !! | ATTGTTTTACTATGGTTGCA+TGG | + | chr2_3:48708157-48708176 | Msa0295880:intron | 30.0% |
| ACTGATTATTTGTAAACCAC+TGG | + | chr2_3:48708190-48708209 | Msa0295880:intron | 30.0% | |
| TACATAATAATAGCATCCAG+TGG | - | chr2_3:48708209-48708228 | None:intergenic | 30.0% | |
| ! | TAAACAATGCTATTTGATGC+TGG | + | chr2_3:48708409-48708428 | Msa0295880:intron | 30.0% |
| ACATGTTCAATTGGAGATAT+AGG | + | chr2_3:48709187-48709206 | Msa0295880:three_prime_UTR | 30.0% | |
| AATAAGCTGGTTATGTTCAA+GGG | - | chr2_3:48709457-48709476 | None:intergenic | 30.0% | |
| AAATAAGCTGGTTATGTTCA+AGG | - | chr2_3:48709458-48709477 | None:intergenic | 30.0% | |
| ! | AAAAGATTAATGGGCCTATG+CGG | + | chr2_3:48703916-48703935 | Msa0295880:five_prime_UTR | 35.0% |
| AAGTGAAGAAGCTAACCTTA+GGG | - | chr2_3:48704021-48704040 | None:intergenic | 35.0% | |
| GAAATGAATACCTGTTGTGA+CGG | - | chr2_3:48704087-48704106 | None:intergenic | 35.0% | |
| TTTAAAGGAACGCATATGGT+TGG | - | chr2_3:48704326-48704345 | None:intergenic | 35.0% | |
| ACAAATAGCTGCAAATAAGC+TGG | - | chr2_3:48705036-48705055 | None:intergenic | 35.0% | |
| AATTAAACTTTGGGCCTGTT+TGG | - | chr2_3:48705250-48705269 | None:intergenic | 35.0% | |
| GTAACGACTCTTTACACTAA+CGG | + | chr2_3:48705342-48705361 | Msa0295880:intron | 35.0% | |
| TTTCTCTTCCCCATGTTATT+TGG | - | chr2_3:48705422-48705441 | None:intergenic | 35.0% | |
| TGAAAATGAGAATGAAGTCG+AGG | + | chr2_3:48705538-48705557 | Msa0295880:CDS | 35.0% | |
| TTCTCTTTGTTCCTGAATAC+AGG | - | chr2_3:48705584-48705603 | None:intergenic | 35.0% | |
| ! | CAGGAACAAAGAGAAAGTTT+TGG | + | chr2_3:48705589-48705608 | Msa0295880:CDS | 35.0% |
| !!! | AAGTTTTGGTTACTTGCTCT+AGG | + | chr2_3:48705603-48705622 | Msa0295880:CDS | 35.0% |
| AAACTACCTTGAAGAGCTTA+TGG | + | chr2_3:48705860-48705879 | Msa0295880:intron | 35.0% | |
| !! | TTCCTTTTATTGCGGGTTAT+TGG | + | chr2_3:48706068-48706087 | Msa0295880:intron | 35.0% |
| AACCAATAACCCGCAATAAA+AGG | - | chr2_3:48706073-48706092 | None:intergenic | 35.0% | |
| ATAGAAAAGCCAATTTGGGA+GGG | - | chr2_3:48706560-48706579 | None:intergenic | 35.0% | |
| CTGAAATTCACATACACAGA+AGG | - | chr2_3:48706719-48706738 | None:intergenic | 35.0% | |
| AGGCAAAAGATCTTTATCTC+TGG | + | chr2_3:48706746-48706765 | Msa0295880:CDS | 35.0% | |
| ! | AGAAATTAGTAAGATGGGCT+CGG | - | chr2_3:48706959-48706978 | None:intergenic | 35.0% |
| ATGAAAATGTCAAAAGAGGG+CGG | - | chr2_3:48707054-48707073 | None:intergenic | 35.0% | |
| TGCATACTGGAAACTGTTAA+AGG | + | chr2_3:48707090-48707109 | Msa0295880:CDS | 35.0% | |
| ! | TACTCTTCTATGCACTGTTT+TGG | + | chr2_3:48707141-48707160 | Msa0295880:intron | 35.0% |
| AGAAAACAAAAACGTGGTCA+TGG | - | chr2_3:48707650-48707669 | None:intergenic | 35.0% | |
| GGTAATTTCGGAACCATATA+TGG | - | chr2_3:48707686-48707705 | None:intergenic | 35.0% | |
| TATATGGTTCCGAAATTACC+AGG | + | chr2_3:48707686-48707705 | Msa0295880:CDS | 35.0% | |
| AGACACAAACCTGGTAATTT+CGG | - | chr2_3:48707698-48707717 | None:intergenic | 35.0% | |
| AAAAATAAGCGCAAGCATCT+TGG | + | chr2_3:48707831-48707850 | Msa0295880:intron | 35.0% | |
| AACATTGCCGATGGATAAAT+TGG | + | chr2_3:48707942-48707961 | Msa0295880:intron | 35.0% | |
| ACATTGCCGATGGATAAATT+GGG | + | chr2_3:48707943-48707962 | Msa0295880:intron | 35.0% | |
| CACAAACCCAATTTATCCAT+CGG | - | chr2_3:48707952-48707971 | None:intergenic | 35.0% | |
| ATTGTCTACACTTCTAGTCT+AGG | + | chr2_3:48708234-48708253 | Msa0295880:intron | 35.0% | |
| ! | GTATGATTGATGGATCTACA+GGG | + | chr2_3:48708317-48708336 | Msa0295880:intron | 35.0% |
| !!! | CTTGCATTTTTTTGCGAATG+TGG | + | chr2_3:48708436-48708455 | Msa0295880:intron | 35.0% |
| TCTGCATGAGAATAAAAACG+TGG | - | chr2_3:48708533-48708552 | None:intergenic | 35.0% | |
| AATTTGTCTGACTCATTGTG+AGG | - | chr2_3:48708564-48708583 | None:intergenic | 35.0% | |
| ! | TCATTTTATCAAGGCTTCCT+CGG | - | chr2_3:48708590-48708609 | None:intergenic | 35.0% |
| ATTGATTGAGGTCTGCAAAT+TGG | + | chr2_3:48708611-48708630 | Msa0295880:intron | 35.0% | |
| TGTGTGCAAACTACTTGTTT+AGG | + | chr2_3:48708683-48708702 | Msa0295880:intron | 35.0% | |
| TGCAAACTACTTGTTTAGGT+TGG | + | chr2_3:48708687-48708706 | Msa0295880:intron | 35.0% | |
| !!! | CTGCCACCGAATATTTTAAT+TGG | - | chr2_3:48708732-48708751 | None:intergenic | 35.0% |
| !! | AAAATATTCGGTGGCAGTTT+TGG | + | chr2_3:48708735-48708754 | Msa0295880:CDS | 35.0% |
| ATAATGGTCATTACCTGGTT+TGG | - | chr2_3:48708798-48708817 | None:intergenic | 35.0% | |
| AGAACATAATGGTCATTACC+TGG | - | chr2_3:48708803-48708822 | None:intergenic | 35.0% | |
| CACCTTATATTCGACAAGAA+TGG | + | chr2_3:48709090-48709109 | Msa0295880:three_prime_UTR | 35.0% | |
| CACCATTCTTGTCGAATATA+AGG | - | chr2_3:48709095-48709114 | None:intergenic | 35.0% | |
| ! | TCGACAAGAATGGTGATTTT+TGG | + | chr2_3:48709100-48709119 | Msa0295880:three_prime_UTR | 35.0% |
| !!! | CAAGAATGGTGATTTTTGGT+TGG | + | chr2_3:48709104-48709123 | Msa0295880:three_prime_UTR | 35.0% |
| !! | TTTTTAGCCTGAGATTGACT+TGG | + | chr2_3:48709425-48709444 | Msa0295880:three_prime_UTR | 35.0% |
| ! | AAAGATTAATGGGCCTATGC+GGG | + | chr2_3:48703917-48703936 | Msa0295880:five_prime_UTR | 40.0% |
| GAAGTGAAGAAGCTAACCTT+AGG | - | chr2_3:48704022-48704041 | None:intergenic | 40.0% | |
| !! | TGCACTTGTTTCTCGCTTTT+CGG | + | chr2_3:48704627-48704646 | Msa0295880:intron | 40.0% |
| GAAGAGAAAACGAAGCGAAA+AGG | + | chr2_3:48705433-48705452 | Msa0295880:CDS | 40.0% | |
| ! | GGAGCAACATCTTCCTTTTT+GGG | - | chr2_3:48705476-48705495 | None:intergenic | 40.0% |
| ! | TGGAGCAACATCTTCCTTTT+TGG | - | chr2_3:48705477-48705496 | None:intergenic | 40.0% |
| CTTATCCTTCCATCCCAAAA+GGG | - | chr2_3:48705516-48705535 | None:intergenic | 40.0% | |
| TCTTATCCTTCCATCCCAAA+AGG | - | chr2_3:48705517-48705536 | None:intergenic | 40.0% | |
| TGAGAATGAAGTCGAGGTTA+AGG | + | chr2_3:48705544-48705563 | Msa0295880:CDS | 40.0% | |
| ! | GCTCTAGGCGTATTGTTTAT+AGG | + | chr2_3:48705618-48705637 | Msa0295880:CDS | 40.0% |
| CTTCTTCCATAAGCTCTTCA+AGG | - | chr2_3:48705869-48705888 | None:intergenic | 40.0% | |
| CCAGGTTCAACATCAAATGT+CGG | - | chr2_3:48706133-48706152 | None:intergenic | 40.0% | |
| CAATTTGGGAGGGAAAACAA+AGG | - | chr2_3:48706550-48706569 | None:intergenic | 40.0% | |
| !!! | CTTTGTTTTCCCTCCCAAAT+TGG | + | chr2_3:48706548-48706567 | Msa0295880:intron | 40.0% |
| CATAGAAAAGCCAATTTGGG+AGG | - | chr2_3:48706561-48706580 | None:intergenic | 40.0% | |
| GTGTATGTGAATTTCAGTGC+AGG | + | chr2_3:48706722-48706741 | Msa0295880:intron | 40.0% | |
| ATGTGAATTTCAGTGCAGGA+AGG | + | chr2_3:48706726-48706745 | Msa0295880:intron | 40.0% | |
| AATTTAACAGACGGACCGTT+GGG | - | chr2_3:48706784-48706803 | None:intergenic | 40.0% | |
| AAATTTAACAGACGGACCGT+TGG | - | chr2_3:48706785-48706804 | None:intergenic | 40.0% | |
| ATGGAGGAATTGAAGCTTAC+TGG | + | chr2_3:48707010-48707029 | Msa0295880:CDS | 40.0% | |
| TGGAGGAATTGAAGCTTACT+GGG | + | chr2_3:48707011-48707030 | Msa0295880:CDS | 40.0% | |
| CTTACTGGGAATCACCTAAA+AGG | + | chr2_3:48707025-48707044 | Msa0295880:CDS | 40.0% | |
| TGAAAATGTCAAAAGAGGGC+GGG | - | chr2_3:48707053-48707072 | None:intergenic | 40.0% | |
| GTTAAAGGAGATGCTGTTAC+AGG | + | chr2_3:48707105-48707124 | Msa0295880:CDS | 40.0% | |
| GAGATGCTGTTACAGGTATT+TGG | + | chr2_3:48707112-48707131 | Msa0295880:intron | 40.0% | |
| !!! | CTTAGTTTGGTGGTGCTTTT+CGG | + | chr2_3:48707197-48707216 | Msa0295880:intron | 40.0% |
| !!! | TTAGTTTGGTGGTGCTTTTC+GGG | + | chr2_3:48707198-48707217 | Msa0295880:intron | 40.0% |
| ! | TTTATGTGCGCACTTTTCTG+AGG | + | chr2_3:48707260-48707279 | Msa0295880:intron | 40.0% |
| !!! | GCGCACATGCATTTTTTTCT+TGG | + | chr2_3:48707515-48707534 | Msa0295880:intron | 40.0% |
| CCTTCGGAGTTTCAAAAATC+TGG | - | chr2_3:48707605-48707624 | None:intergenic | 40.0% | |
| !!! | CCAGATTTTTGAAACTCCGA+AGG | + | chr2_3:48707602-48707621 | Msa0295880:intron | 40.0% |
| ! | TTAGCCTTTCTATGGTCCTT+CGG | - | chr2_3:48707621-48707640 | None:intergenic | 40.0% |
| ACAAAAACGTGGTCATGGAA+AGG | - | chr2_3:48707645-48707664 | None:intergenic | 40.0% | |
| TGCAAATTCAGACACAAACC+TGG | - | chr2_3:48707707-48707726 | None:intergenic | 40.0% | |
| CTATGGCTAACCAAAACAAC+TGG | - | chr2_3:48707868-48707887 | None:intergenic | 40.0% | |
| TTCTTTGCTAACATTGCCGA+TGG | + | chr2_3:48707933-48707952 | Msa0295880:intron | 40.0% | |
| GTAGATCCATCAATCATACG+TGG | - | chr2_3:48708316-48708335 | None:intergenic | 40.0% | |
| ! | CGTATGATTGATGGATCTAC+AGG | + | chr2_3:48708316-48708335 | Msa0295880:intron | 40.0% |
| ! | ATTTTATCAAGGCTTCCTCG+GGG | - | chr2_3:48708588-48708607 | None:intergenic | 40.0% |
| ! | CATTTTATCAAGGCTTCCTC+GGG | - | chr2_3:48708589-48708608 | None:intergenic | 40.0% |
| !! | TACTTGTTTAGGTTGGTCCA+CGG | + | chr2_3:48708694-48708713 | Msa0295880:intron | 40.0% |
| ! | TGGTTTGGCGACACATATAA+TGG | - | chr2_3:48708783-48708802 | None:intergenic | 40.0% |
| ATTATATGTGTCGCCAAACC+AGG | + | chr2_3:48708782-48708801 | Msa0295880:CDS | 40.0% | |
| AGTGTGCACAGAGAACATAA+TGG | - | chr2_3:48708814-48708833 | None:intergenic | 40.0% | |
| CGCTTTGCAGAAGAAGAAAA+AGG | + | chr2_3:48708916-48708935 | Msa0295880:CDS | 40.0% | |
| TTGCAGAAGAAGAAAAAGGC+TGG | + | chr2_3:48708920-48708939 | Msa0295880:CDS | 40.0% | |
| AGAAGGTCAAAGCAAAGACA+AGG | + | chr2_3:48708954-48708973 | Msa0295880:CDS | 40.0% | |
| AAGGAGGAAAATGCATGAGA+TGG | + | chr2_3:48708973-48708992 | Msa0295880:CDS | 40.0% | |
| CACATATCTGCAAACTCATC+AGG | - | chr2_3:48709013-48709032 | None:intergenic | 40.0% | |
| CTGATGAGTTTGCAGATATG+TGG | + | chr2_3:48709011-48709030 | Msa0295880:CDS | 40.0% | |
| TTGGCAGTCCATTCTTTGTA+GGG | + | chr2_3:48709123-48709142 | Msa0295880:three_prime_UTR | 40.0% | |
| CAAAAAGCCCCTACAAAGAA+TGG | - | chr2_3:48709134-48709153 | None:intergenic | 40.0% | |
| TACAGTATAAGTAAGGCGGT+AGG | - | chr2_3:48709334-48709353 | None:intergenic | 40.0% | |
| GTAGTAGTGTTTAGCAGAGA+AGG | + | chr2_3:48709396-48709415 | Msa0295880:three_prime_UTR | 40.0% | |
| TTTAACGGAAATGCCCGCAT+AGG | - | chr2_3:48703933-48703952 | None:intergenic | 45.0% | |
| AGATCCTCGAAAGAACCCTA+AGG | + | chr2_3:48704003-48704022 | Msa0295880:five_prime_UTR | 45.0% | |
| CTAACCTTAGGGTTCTTTCG+AGG | - | chr2_3:48704010-48704029 | None:intergenic | 45.0% | |
| GAAGTCGAGGTTAAGGAGAA+TGG | + | chr2_3:48705551-48705570 | Msa0295880:CDS | 45.0% | |
| ATGGTGCTTCACCTGTATTC+AGG | + | chr2_3:48705570-48705589 | Msa0295880:CDS | 45.0% | |
| ! | CTGCACATAAAGGGCTTGTT+TGG | - | chr2_3:48705991-48706010 | None:intergenic | 45.0% |
| CCGACATTTGATGTTGAACC+TGG | + | chr2_3:48706130-48706149 | Msa0295880:CDS | 45.0% | |
| GCTTCTGCCTCATTGCAAAA+AGG | + | chr2_3:48706157-48706176 | Msa0295880:CDS | 45.0% | |
| GCAAGACACAAGAGTCAGAT+GGG | - | chr2_3:48706477-48706496 | None:intergenic | 45.0% | |
| TGCAAGACACAAGAGTCAGA+TGG | - | chr2_3:48706478-48706497 | None:intergenic | 45.0% | |
| ATTTAACAGACGGACCGTTG+GGG | - | chr2_3:48706783-48706802 | None:intergenic | 45.0% | |
| TGTGCACTGAAAAGCAGTGA+AGG | - | chr2_3:48706988-48707007 | None:intergenic | 45.0% | |
| !! | CTGCTTTTCAGTGCACACAA+TGG | + | chr2_3:48706991-48707010 | Msa0295880:intron | 45.0% |
| ! | CTTTTCAGTGCACACAATGG+AGG | + | chr2_3:48706994-48707013 | Msa0295880:intron | 45.0% |
| AACTCCGAAGGACCATAGAA+AGG | + | chr2_3:48707614-48707633 | Msa0295880:CDS | 45.0% | |
| ! | GGAAAGGCTTAGCCTTTCTA+TGG | - | chr2_3:48707629-48707648 | None:intergenic | 45.0% |
| ! | AATCATACGTGGTAGCGTCA+TGG | - | chr2_3:48708305-48708324 | None:intergenic | 45.0% |
| ACGCTACCACGTATGATTGA+TGG | + | chr2_3:48708307-48708326 | Msa0295880:intron | 45.0% | |
| ATTGGATTCAAGCAGAACCG+TGG | - | chr2_3:48708714-48708733 | None:intergenic | 45.0% | |
| !! | ATATTCGGTGGCAGTTTTGG+AGG | + | chr2_3:48708738-48708757 | Msa0295880:CDS | 45.0% |
| GGCTGGAACATTTGCAAAGA+AGG | + | chr2_3:48708937-48708956 | Msa0295880:CDS | 45.0% | |
| AGGTCAAAGCAAAGACAAGG+AGG | + | chr2_3:48708957-48708976 | Msa0295880:CDS | 45.0% | |
| GTTGGCAGTCCATTCTTTGT+AGG | + | chr2_3:48709122-48709141 | Msa0295880:three_prime_UTR | 45.0% | |
| TGGCAGTCCATTCTTTGTAG+GGG | + | chr2_3:48709124-48709143 | Msa0295880:three_prime_UTR | 45.0% | |
| GCATAAGCCAAGTCAATCTC+AGG | - | chr2_3:48709435-48709454 | None:intergenic | 45.0% | |
| GCAGAGTTAAATCGGGTCGT+GGG | - | chr2_3:48703967-48703986 | None:intergenic | 50.0% | |
| TGCAGAGTTAAATCGGGTCG+TGG | - | chr2_3:48703968-48703987 | None:intergenic | 50.0% | |
| ACTGCACTCTCTCTGGTGTT+GGG | + | chr2_3:48704048-48704067 | Msa0295880:five_prime_UTR | 50.0% | |
| ! | TCTGAGATCACCGTCACAAC+AGG | + | chr2_3:48704074-48704093 | Msa0295880:five_prime_UTR | 50.0% |
| AAGCGAAAAGGCTGAAGCTG+TGG | + | chr2_3:48705445-48705464 | Msa0295880:CDS | 50.0% | |
| ! | AGACCAGTGAGGACCCTTTT+GGG | + | chr2_3:48705500-48705519 | Msa0295880:CDS | 50.0% |
| AATGAGGCAGAAGCGATACC+AGG | - | chr2_3:48706151-48706170 | None:intergenic | 50.0% | |
| CTCAACAAGCTCGTTCAAGG+TGG | - | chr2_3:48706216-48706235 | None:intergenic | 50.0% | |
| GAGCTCAACAAGCTCGTTCA+AGG | - | chr2_3:48706219-48706238 | None:intergenic | 50.0% | |
| TGGATGGCAAAATGCCCCAA+CGG | + | chr2_3:48706766-48706785 | Msa0295880:CDS | 50.0% | |
| GAGTCAGACAAATTACCCCG+AGG | + | chr2_3:48708570-48708589 | Msa0295880:CDS | 50.0% | |
| ! | CCAGAGAGAGTGCAGTGGAA+TGG | - | chr2_3:48704044-48704063 | None:intergenic | 55.0% |
| CCATTCCACTGCACTCTCTC+TGG | + | chr2_3:48704041-48704060 | Msa0295880:five_prime_UTR | 55.0% | |
| ! | CAACACCAGAGAGAGTGCAG+TGG | - | chr2_3:48704049-48704068 | None:intergenic | 55.0% |
| CACTGCACTCTCTCTGGTGT+TGG | + | chr2_3:48704047-48704066 | Msa0295880:five_prime_UTR | 55.0% | |
| ! | CTGCACTCTCTCTGGTGTTG+GGG | + | chr2_3:48704049-48704068 | Msa0295880:five_prime_UTR | 55.0% |
| AGCTGTGGCTGTGCCCAAAA+AGG | + | chr2_3:48705460-48705479 | Msa0295880:CDS | 55.0% | |
| TTGCTCCAGAGAGACCAGTG+AGG | + | chr2_3:48705489-48705508 | Msa0295880:CDS | 55.0% | |
| ! | GAGACCAGTGAGGACCCTTT+TGG | + | chr2_3:48705499-48705518 | Msa0295880:CDS | 55.0% |
| CATCCCAAAAGGGTCCTCAC+TGG | - | chr2_3:48705506-48705525 | None:intergenic | 55.0% | |
| !! | CAGTGAGGACCCTTTTGGGA+TGG | + | chr2_3:48705504-48705523 | Msa0295880:CDS | 55.0% |
| !!! | GAGGACCCTTTTGGGATGGA+AGG | + | chr2_3:48705508-48705527 | Msa0295880:CDS | 55.0% |
| ! | AAAGAGGGCGGGAGCCTTTT+AGG | - | chr2_3:48707042-48707061 | None:intergenic | 55.0% |
| GCATGAGATGGCCAATCCTC+TGG | + | chr2_3:48708985-48709004 | Msa0295880:CDS | 55.0% | |
| CTCATCAGGCTCCAGAGGAT+TGG | - | chr2_3:48708999-48709018 | None:intergenic | 55.0% | |
| GCAAACTCATCAGGCTCCAG+AGG | - | chr2_3:48709004-48709023 | None:intergenic | 55.0% | |
| ! | AGGGTCCTCACTGGTCTCTC+TGG | - | chr2_3:48705497-48705516 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_3 | gene | 48703903 | 48709503 | 48703903 | ID=Msa0295880;Name=Msa0295880 |
| chr2_3 | mRNA | 48703903 | 48709503 | 48703903 | ID=Msa0295880-mRNA-1;Parent=Msa0295880;Name=Msa0295880-mRNA-1;_AED=0.09;_eAED=0.09;_QI=202|1|1|1|0.7|0.54|11|408|319 |
| chr2_3 | exon | 48703903 | 48704095 | 48703903 | ID=Msa0295880-mRNA-1:exon:15288;Parent=Msa0295880-mRNA-1 |
| chr2_3 | exon | 48705419 | 48705639 | 48705419 | ID=Msa0295880-mRNA-1:exon:15289;Parent=Msa0295880-mRNA-1 |
| chr2_3 | exon | 48706127 | 48706268 | 48706127 | ID=Msa0295880-mRNA-1:exon:15290;Parent=Msa0295880-mRNA-1 |
| chr2_3 | exon | 48706739 | 48706817 | 48706739 | ID=Msa0295880-mRNA-1:exon:15291;Parent=Msa0295880-mRNA-1 |
| chr2_3 | exon | 48707002 | 48707126 | 48707002 | ID=Msa0295880-mRNA-1:exon:15292;Parent=Msa0295880-mRNA-1 |
| chr2_3 | exon | 48707606 | 48707707 | 48707606 | ID=Msa0295880-mRNA-1:exon:15293;Parent=Msa0295880-mRNA-1 |
| chr2_3 | exon | 48708552 | 48708620 | 48708552 | ID=Msa0295880-mRNA-1:exon:15294;Parent=Msa0295880-mRNA-1 |
| chr2_3 | exon | 48708705 | 48708803 | 48708705 | ID=Msa0295880-mRNA-1:exon:15295;Parent=Msa0295880-mRNA-1 |
| chr2_3 | exon | 48708911 | 48709156 | 48708911 | ID=Msa0295880-mRNA-1:exon:15296;Parent=Msa0295880-mRNA-1 |
| chr2_3 | exon | 48709177 | 48709261 | 48709177 | ID=Msa0295880-mRNA-1:exon:15297;Parent=Msa0295880-mRNA-1 |
| chr2_3 | exon | 48709295 | 48709503 | 48709295 | ID=Msa0295880-mRNA-1:exon:15298;Parent=Msa0295880-mRNA-1 |
| chr2_3 | five_prime_UTR | 48703903 | 48704095 | 48703903 | ID=Msa0295880-mRNA-1:five_prime_utr;Parent=Msa0295880-mRNA-1 |
| chr2_3 | five_prime_UTR | 48705419 | 48705427 | 48705419 | ID=Msa0295880-mRNA-1:five_prime_utr;Parent=Msa0295880-mRNA-1 |
| chr2_3 | CDS | 48705428 | 48705639 | 48705428 | ID=Msa0295880-mRNA-1:cds;Parent=Msa0295880-mRNA-1 |
| chr2_3 | CDS | 48706127 | 48706268 | 48706127 | ID=Msa0295880-mRNA-1:cds;Parent=Msa0295880-mRNA-1 |
| chr2_3 | CDS | 48706739 | 48706817 | 48706739 | ID=Msa0295880-mRNA-1:cds;Parent=Msa0295880-mRNA-1 |
| chr2_3 | CDS | 48707002 | 48707126 | 48707002 | ID=Msa0295880-mRNA-1:cds;Parent=Msa0295880-mRNA-1 |
| chr2_3 | CDS | 48707606 | 48707707 | 48707606 | ID=Msa0295880-mRNA-1:cds;Parent=Msa0295880-mRNA-1 |
| chr2_3 | CDS | 48708552 | 48708620 | 48708552 | ID=Msa0295880-mRNA-1:cds;Parent=Msa0295880-mRNA-1 |
| chr2_3 | CDS | 48708705 | 48708803 | 48708705 | ID=Msa0295880-mRNA-1:cds;Parent=Msa0295880-mRNA-1 |
| chr2_3 | CDS | 48708911 | 48709042 | 48708911 | ID=Msa0295880-mRNA-1:cds;Parent=Msa0295880-mRNA-1 |
| chr2_3 | three_prime_UTR | 48709043 | 48709156 | 48709043 | ID=Msa0295880-mRNA-1:three_prime_utr;Parent=Msa0295880-mRNA-1 |
| chr2_3 | three_prime_UTR | 48709177 | 48709261 | 48709177 | ID=Msa0295880-mRNA-1:three_prime_utr;Parent=Msa0295880-mRNA-1 |
| chr2_3 | three_prime_UTR | 48709295 | 48709503 | 48709295 | ID=Msa0295880-mRNA-1:three_prime_utr;Parent=Msa0295880-mRNA-1 |
| Gene Sequence |
| Protein sequence |
