Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0338780 | XP_013462840.1 | 96.457 | 254 | 9 | 0 | 1 | 254 | 216 | 469 | 0.0 | 522 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0338780 | sp|P92980|APR3_ARATH | 79.528 | 254 | 47 | 1 | 1 | 254 | 210 | 458 | 4.66e-152 | 434 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0196700 | Msa0338780 | 0.943037 | 2.472143e-102 | -8.615850e-47 |
| Msa0196710 | Msa0338780 | 0.891796 | 2.862613e-74 | -8.615850e-47 |
| Msa0238580 | Msa0338780 | 0.867520 | 1.288016e-65 | -8.615850e-47 |
| Msa0276150 | Msa0338780 | 0.861460 | 1.010377e-63 | -8.615850e-47 |
| Msa0338780 | Msa0425710 | 0.826366 | 2.821707e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0338780 | MtrunA17_Chr2g0288581 | 96.457 | 254 | 9 | 0 | 1 | 254 | 216 | 469 | 0.0 | 522 |
| Msa0338780 | MtrunA17_Chr1g0189051 | 77.333 | 75 | 17 | 0 | 179 | 253 | 2 | 76 | 1.77e-32 | 114 |
| Msa0338780 | MtrunA17_Chr3g0079881 | 78.571 | 70 | 15 | 0 | 185 | 254 | 13 | 82 | 9.53e-30 | 107 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0338780 | AT4G21990.1 | 79.528 | 254 | 47 | 1 | 1 | 254 | 210 | 458 | 4.74e-153 | 434 |
| Msa0338780 | AT4G04610.1 | 76.953 | 256 | 49 | 2 | 1 | 254 | 218 | 465 | 3.78e-147 | 419 |
| Msa0338780 | AT1G62180.2 | 74.409 | 254 | 56 | 1 | 1 | 254 | 203 | 447 | 3.90e-144 | 411 |
| Msa0338780 | AT1G62180.1 | 74.409 | 254 | 56 | 1 | 1 | 254 | 210 | 454 | 7.12e-144 | 411 |
| Msa0338780 | AT4G21990.2 | 90.526 | 95 | 9 | 0 | 1 | 95 | 245 | 339 | 5.49e-60 | 193 |
Find 85 sgRNAs with CRISPR-Local
Find 204 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCCGTTTCCATTACCATTC+TGG | 0.158439 | 2_4:-59326518 | None:intergenic |
| TGGCATTTATTAATGCTTTA+AGG | 0.170654 | 2_4:+59327037 | Msa0338780:CDS |
| TGCTCAAGCTGACCACATTC+TGG | 0.202249 | 2_4:-59326587 | None:intergenic |
| AATTGAGAATCTAGCTAAAT+TGG | 0.278779 | 2_4:+59326617 | Msa0338780:CDS |
| TCATGCTGACCAGGCAAAAC+TGG | 0.308335 | 2_4:-59326411 | None:intergenic |
| GTCTGAAGTACCCGTTGTTC+AGG | 0.324589 | 2_4:+59326215 | Msa0338780:CDS |
| GGAGGAATCATATGTTGATT+TGG | 0.337432 | 2_4:+59326837 | Msa0338780:CDS |
| ATCGGCCGAGAAGAGTGTTT+AGG | 0.350482 | 2_4:-59326976 | None:intergenic |
| TCGGCCGAGAAGAGTGTTTA+GGG | 0.355914 | 2_4:-59326975 | None:intergenic |
| GGTTTGAGAGCATGGATAAC+TGG | 0.378025 | 2_4:+59326162 | None:intergenic |
| TCTTCCCTAAACACTCTTCT+CGG | 0.378246 | 2_4:+59326971 | Msa0338780:CDS |
| CCCTCTCTTTCATGCTGACC+AGG | 0.381378 | 2_4:-59326420 | None:intergenic |
| TCACAAAGGTAATTTGAAAC+AGG | 0.394072 | 2_4:+59326485 | Msa0338780:CDS |
| TGCATAGAGCACAACGATCC+AGG | 0.397198 | 2_4:-59326655 | None:intergenic |
| TCCGTTTCCATTACCATTCT+GGG | 0.399151 | 2_4:-59326517 | None:intergenic |
| TGTGAATGCAATGCATTAAC+AGG | 0.400904 | 2_4:-59326351 | None:intergenic |
| GCAGAGAATTTAGCAGGGTC+AGG | 0.405699 | 2_4:+59326859 | Msa0338780:CDS |
| AAGACCACACTCCTTTGCTT+TGG | 0.412645 | 2_4:-59326463 | None:intergenic |
| GCTCAAGCTGACCACATTCT+GGG | 0.413593 | 2_4:-59326586 | None:intergenic |
| TTACCCTTCACATTTGCAAC+CGG | 0.414227 | 2_4:-59326294 | None:intergenic |
| AGAATATGCGAAGAATGAAC+TGG | 0.418272 | 2_4:+59326921 | Msa0338780:CDS |
| GTGGTCAGCTTGAGCAGGGC+TGG | 0.421089 | 2_4:+59326594 | Msa0338780:CDS |
| CTCTTAAGGGTTTGAGAGCA+TGG | 0.434805 | 2_4:+59326154 | None:intergenic |
| AAGATCAGTCGCCTGGTACT+AGG | 0.444407 | 2_4:+59326193 | Msa0338780:CDS |
| GAGAGACGTTGATTCATTAG+TGG | 0.445667 | 2_4:+59327017 | Msa0338780:CDS |
| ACAGGATCAACCTGAACAAC+GGG | 0.450053 | 2_4:-59326225 | None:intergenic |
| GATTTGGCAGAGAATTTAGC+AGG | 0.459112 | 2_4:+59326853 | Msa0338780:CDS |
| AACGGAGTCGCCCATGCAAA+TGG | 0.462572 | 2_4:+59326534 | Msa0338780:CDS |
| AAAGAGAGGGAAGATGGTGG+TGG | 0.469201 | 2_4:+59326433 | Msa0338780:CDS |
| GCGAAGAATGAACTGGGGTT+GGG | 0.470355 | 2_4:+59326928 | Msa0338780:CDS |
| ATGTGAAGGGTAATGACATA+TGG | 0.471063 | 2_4:+59326304 | Msa0338780:CDS |
| ACCATGGTGCCGCTTCTGTC+AGG | 0.471836 | 2_4:+59326677 | Msa0338780:CDS |
| AGAATGTGGTCAGCTTGAGC+AGG | 0.476294 | 2_4:+59326589 | Msa0338780:CDS |
| TGCGAAGAATGAACTGGGGT+TGG | 0.479248 | 2_4:+59326927 | Msa0338780:CDS |
| GAGGGATTGGATGGTGGGAA+TGG | 0.483411 | 2_4:+59326252 | Msa0338780:CDS |
| TTTAGGGAAGAAGAGTATTG+TGG | 0.485147 | 2_4:-59326959 | None:intergenic |
| TTTAGCAGGGTCAGGAGTGA+AGG | 0.486632 | 2_4:+59326867 | Msa0338780:CDS |
| ATGACATATGGACCTTCCTT+AGG | 0.487981 | 2_4:+59326316 | Msa0338780:CDS |
| TTAGGGAAGAAGAGTATTGT+GGG | 0.489577 | 2_4:-59326958 | None:intergenic |
| GTTGGAAAATTTAGAGCGGA+TGG | 0.504381 | 2_4:+59326889 | Msa0338780:CDS |
| AAGAGAGGGAAGATGGTGGT+GGG | 0.506965 | 2_4:+59326434 | Msa0338780:CDS |
| CAACCGGGTTCCACTTAACA+AGG | 0.507691 | 2_4:-59326278 | None:intergenic |
| TCACAAGGATACGTTTCCAT+TGG | 0.510148 | 2_4:+59326369 | Msa0338780:CDS |
| TGGAGGACCGAAAAGAGCCC+TGG | 0.510799 | 2_4:+59326637 | Msa0338780:CDS |
| AGAGGGAAGATGGTGGTGGG+AGG | 0.521000 | 2_4:+59326437 | Msa0338780:CDS |
| AGCATGAAAGAGAGGGAAGA+TGG | 0.523785 | 2_4:+59326427 | Msa0338780:CDS |
| GCCCAGAATGGTAATGGAAA+CGG | 0.529855 | 2_4:+59326516 | Msa0338780:CDS |
| TACCCTTCACATTTGCAACC+GGG | 0.532628 | 2_4:-59326293 | None:intergenic |
| GCAGGGTCAGGAGTGAAGGT+TGG | 0.536117 | 2_4:+59326871 | Msa0338780:CDS |
| GATGCTGCCCAGAATGGTAA+TGG | 0.542560 | 2_4:+59326510 | Msa0338780:CDS |
| TGAGAATCTAGCTAAATTGG+AGG | 0.548731 | 2_4:+59326620 | Msa0338780:CDS |
| GGCAAAACTGGCCTTGTGCA+TGG | 0.554255 | 2_4:-59326399 | None:intergenic |
| TAAATTCTTACAGGCTATGG+AGG | 0.556676 | 2_4:+59326819 | Msa0338780:intron |
| TGTGCATGGTTCACAACCAA+TGG | 0.562874 | 2_4:-59326385 | None:intergenic |
| CAGAGAAAAGATCAGTCGCC+TGG | 0.567745 | 2_4:+59326186 | Msa0338780:CDS |
| CAGGATGATGCTGCCCAGAA+TGG | 0.569226 | 2_4:+59326504 | Msa0338780:CDS |
| GGAATGGTAGCCTTGTTAAG+TGG | 0.569264 | 2_4:+59326268 | Msa0338780:CDS |
| AGTTGTAGAGCCATTTGCAT+GGG | 0.582582 | 2_4:-59326544 | None:intergenic |
| GCCTGGTCAGCATGAAAGAG+AGG | 0.586042 | 2_4:+59326419 | Msa0338780:CDS |
| CAGGCACATCCATTGTCCTA+AGG | 0.586597 | 2_4:-59326332 | None:intergenic |
| TAGGGAAGAAGAGTATTGTG+GGG | 0.586899 | 2_4:-59326957 | None:intergenic |
| CAGTTGTAGAGCCATTTGCA+TGG | 0.589839 | 2_4:-59326545 | None:intergenic |
| GAATATGCGAAGAATGAACT+GGG | 0.590520 | 2_4:+59326922 | Msa0338780:CDS |
| CACATCCATTGTCCTAAGGA+AGG | 0.591182 | 2_4:-59326328 | None:intergenic |
| AACAGGATCAACCTGAACAA+CGG | 0.605769 | 2_4:-59326226 | None:intergenic |
| GCATAGAGCACAACGATCCA+GGG | 0.606299 | 2_4:-59326654 | None:intergenic |
| GAATGTGGTCAGCTTGAGCA+GGG | 0.611848 | 2_4:+59326590 | Msa0338780:CDS |
| GGTACTTCAGACCTAGTACC+AGG | 0.615263 | 2_4:-59326204 | None:intergenic |
| TGCAAATGGCTCTACAACTG+TGG | 0.617946 | 2_4:+59326548 | Msa0338780:CDS |
| ATGGACCTTCCTTAGGACAA+TGG | 0.618027 | 2_4:+59326323 | Msa0338780:CDS |
| GAACCCGGTTGCAAATGTGA+AGG | 0.621902 | 2_4:+59326290 | Msa0338780:CDS |
| GTGGGAGGATGCCAAAGCAA+AGG | 0.625285 | 2_4:+59326452 | Msa0338780:CDS |
| TAGCCTTGTTAAGTGGAACC+CGG | 0.629187 | 2_4:+59326275 | Msa0338780:CDS |
| CCTGGTCAGCATGAAAGAGA+GGG | 0.640837 | 2_4:+59326420 | Msa0338780:CDS |
| GAAGGTTGGAAAATTTAGAG+CGG | 0.647488 | 2_4:+59326885 | Msa0338780:CDS |
| GTTAATGCATTGCATTCACA+AGG | 0.647862 | 2_4:+59326354 | Msa0338780:CDS |
| AAGGAGTGTGGTCTTCACAA+AGG | 0.651490 | 2_4:+59326471 | Msa0338780:CDS |
| GATGCCAAAGCAAAGGAGTG+TGG | 0.656499 | 2_4:+59326459 | Msa0338780:CDS |
| TTGGTTGTGAACCATGCACA+AGG | 0.657587 | 2_4:+59326388 | Msa0338780:CDS |
| AACCCGGTTGCAAATGTGAA+GGG | 0.659605 | 2_4:+59326291 | Msa0338780:CDS |
| ACCTGACAGAAGCGGCACCA+TGG | 0.685537 | 2_4:-59326678 | None:intergenic |
| ATGAAAGAGAGGGAAGATGG+TGG | 0.685564 | 2_4:+59326430 | Msa0338780:CDS |
| ATTTGGCAGAGAATTTAGCA+GGG | 0.695699 | 2_4:+59326854 | Msa0338780:CDS |
| TCGTTGTGCTCTATGCACCA+TGG | 0.730304 | 2_4:+59326661 | Msa0338780:CDS |
| AATATGCGAAGAATGAACTG+GGG | 0.748326 | 2_4:+59326923 | Msa0338780:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TGTTTAATCTAAATTCTTAC+AGG | + | chr2_4:59326810-59326829 | Msa0338780:intron | 20.0% |
| !! | TGTTTAATCTAAATTCTTAC+AGG | + | chr2_4:59326810-59326829 | Msa0338780:intron | 20.0% |
| ! | AATTGAGAATCTAGCTAAAT+TGG | + | chr2_4:59326617-59326636 | Msa0338780:CDS | 25.0% |
| !!! | TTTTCTGAAGGATACTTAAT+CGG | - | chr2_4:59326997-59327016 | None:intergenic | 25.0% |
| ! | TGGCATTTATTAATGCTTTA+AGG | + | chr2_4:59327037-59327056 | Msa0338780:CDS | 25.0% |
| ! | AATTGAGAATCTAGCTAAAT+TGG | + | chr2_4:59326617-59326636 | Msa0338780:CDS | 25.0% |
| !!! | TTTTCTGAAGGATACTTAAT+CGG | - | chr2_4:59326997-59327016 | None:intergenic | 25.0% |
| ! | TGGCATTTATTAATGCTTTA+AGG | + | chr2_4:59327037-59327056 | Msa0338780:CDS | 25.0% |
| ! | TCACAAAGGTAATTTGAAAC+AGG | + | chr2_4:59326485-59326504 | Msa0338780:CDS | 30.0% |
| TCATGCAATATAGAAAGTTC+AGG | - | chr2_4:59326715-59326734 | None:intergenic | 30.0% | |
| TAAAATAATGCACCTTCAGT+AGG | - | chr2_4:59326763-59326782 | None:intergenic | 30.0% | |
| ATCTAAATTCTTACAGGCTA+TGG | + | chr2_4:59326816-59326835 | Msa0338780:intron | 30.0% | |
| ! | TCACAAAGGTAATTTGAAAC+AGG | + | chr2_4:59326485-59326504 | Msa0338780:CDS | 30.0% |
| TCATGCAATATAGAAAGTTC+AGG | - | chr2_4:59326715-59326734 | None:intergenic | 30.0% | |
| TAAAATAATGCACCTTCAGT+AGG | - | chr2_4:59326763-59326782 | None:intergenic | 30.0% | |
| ATCTAAATTCTTACAGGCTA+TGG | + | chr2_4:59326816-59326835 | Msa0338780:intron | 30.0% | |
| ATGTGAAGGGTAATGACATA+TGG | + | chr2_4:59326304-59326323 | Msa0338780:CDS | 35.0% | |
| TGTGAATGCAATGCATTAAC+AGG | - | chr2_4:59326354-59326373 | None:intergenic | 35.0% | |
| GTTAATGCATTGCATTCACA+AGG | + | chr2_4:59326354-59326373 | Msa0338780:CDS | 35.0% | |
| ! | TATTTTCAACACCCAGAATG+TGG | + | chr2_4:59326575-59326594 | Msa0338780:CDS | 35.0% |
| TGAGAATCTAGCTAAATTGG+AGG | + | chr2_4:59326620-59326639 | Msa0338780:CDS | 35.0% | |
| ! | ATCATTTTACCTGACAGAAG+CGG | - | chr2_4:59326689-59326708 | None:intergenic | 35.0% |
| TAAATTCTTACAGGCTATGG+AGG | + | chr2_4:59326819-59326838 | Msa0338780:intron | 35.0% | |
| ! | GGAGGAATCATATGTTGATT+TGG | + | chr2_4:59326837-59326856 | Msa0338780:CDS | 35.0% |
| ATTTGGCAGAGAATTTAGCA+GGG | + | chr2_4:59326854-59326873 | Msa0338780:CDS | 35.0% | |
| GAAGGTTGGAAAATTTAGAG+CGG | + | chr2_4:59326885-59326904 | Msa0338780:CDS | 35.0% | |
| AGAATATGCGAAGAATGAAC+TGG | + | chr2_4:59326921-59326940 | Msa0338780:CDS | 35.0% | |
| GAATATGCGAAGAATGAACT+GGG | + | chr2_4:59326922-59326941 | Msa0338780:CDS | 35.0% | |
| AATATGCGAAGAATGAACTG+GGG | + | chr2_4:59326923-59326942 | Msa0338780:CDS | 35.0% | |
| !! | TTAGGGAAGAAGAGTATTGT+GGG | - | chr2_4:59326961-59326980 | None:intergenic | 35.0% |
| !! | TTTAGGGAAGAAGAGTATTG+TGG | - | chr2_4:59326962-59326981 | None:intergenic | 35.0% |
| ATGTGAAGGGTAATGACATA+TGG | + | chr2_4:59326304-59326323 | Msa0338780:CDS | 35.0% | |
| TGTGAATGCAATGCATTAAC+AGG | - | chr2_4:59326354-59326373 | None:intergenic | 35.0% | |
| GTTAATGCATTGCATTCACA+AGG | + | chr2_4:59326354-59326373 | Msa0338780:CDS | 35.0% | |
| ! | TATTTTCAACACCCAGAATG+TGG | + | chr2_4:59326575-59326594 | Msa0338780:CDS | 35.0% |
| TGAGAATCTAGCTAAATTGG+AGG | + | chr2_4:59326620-59326639 | Msa0338780:CDS | 35.0% | |
| ! | ATCATTTTACCTGACAGAAG+CGG | - | chr2_4:59326689-59326708 | None:intergenic | 35.0% |
| TAAATTCTTACAGGCTATGG+AGG | + | chr2_4:59326819-59326838 | Msa0338780:intron | 35.0% | |
| ! | GGAGGAATCATATGTTGATT+TGG | + | chr2_4:59326837-59326856 | Msa0338780:CDS | 35.0% |
| ATTTGGCAGAGAATTTAGCA+GGG | + | chr2_4:59326854-59326873 | Msa0338780:CDS | 35.0% | |
| GAAGGTTGGAAAATTTAGAG+CGG | + | chr2_4:59326885-59326904 | Msa0338780:CDS | 35.0% | |
| AGAATATGCGAAGAATGAAC+TGG | + | chr2_4:59326921-59326940 | Msa0338780:CDS | 35.0% | |
| GAATATGCGAAGAATGAACT+GGG | + | chr2_4:59326922-59326941 | Msa0338780:CDS | 35.0% | |
| AATATGCGAAGAATGAACTG+GGG | + | chr2_4:59326923-59326942 | Msa0338780:CDS | 35.0% | |
| !! | TTAGGGAAGAAGAGTATTGT+GGG | - | chr2_4:59326961-59326980 | None:intergenic | 35.0% |
| !! | TTTAGGGAAGAAGAGTATTG+TGG | - | chr2_4:59326962-59326981 | None:intergenic | 35.0% |
| AACAGGATCAACCTGAACAA+CGG | - | chr2_4:59326229-59326248 | None:intergenic | 40.0% | |
| !!! | TCAGGTTGATCCTGTTTTTG+AGG | + | chr2_4:59326233-59326252 | Msa0338780:CDS | 40.0% |
| !!! | CAGGTTGATCCTGTTTTTGA+GGG | + | chr2_4:59326234-59326253 | Msa0338780:CDS | 40.0% |
| !!! | TGATCCTGTTTTTGAGGGAT+TGG | + | chr2_4:59326239-59326258 | Msa0338780:CDS | 40.0% |
| !! | TTTTTGAGGGATTGGATGGT+GGG | + | chr2_4:59326247-59326266 | Msa0338780:CDS | 40.0% |
| TTACCCTTCACATTTGCAAC+CGG | - | chr2_4:59326297-59326316 | None:intergenic | 40.0% | |
| ATGACATATGGACCTTCCTT+AGG | + | chr2_4:59326316-59326335 | Msa0338780:CDS | 40.0% | |
| TCACAAGGATACGTTTCCAT+TGG | + | chr2_4:59326369-59326388 | Msa0338780:CDS | 40.0% | |
| TCCGTTTCCATTACCATTCT+GGG | - | chr2_4:59326520-59326539 | None:intergenic | 40.0% | |
| AGTTGTAGAGCCATTTGCAT+GGG | - | chr2_4:59326547-59326566 | None:intergenic | 40.0% | |
| TGTTACCATTCTCCTACTGA+AGG | + | chr2_4:59326748-59326767 | Msa0338780:intron | 40.0% | |
| GATTTGGCAGAGAATTTAGC+AGG | + | chr2_4:59326853-59326872 | Msa0338780:CDS | 40.0% | |
| ! | GTTGGAAAATTTAGAGCGGA+TGG | + | chr2_4:59326889-59326908 | Msa0338780:CDS | 40.0% |
| !! | TAGGGAAGAAGAGTATTGTG+GGG | - | chr2_4:59326960-59326979 | None:intergenic | 40.0% |
| TCTTCCCTAAACACTCTTCT+CGG | + | chr2_4:59326971-59326990 | Msa0338780:CDS | 40.0% | |
| ! | TCAACGTCTCTCTTTTCTGA+AGG | - | chr2_4:59327009-59327028 | None:intergenic | 40.0% |
| !! | GAGAGACGTTGATTCATTAG+TGG | + | chr2_4:59327017-59327036 | Msa0338780:CDS | 40.0% |
| AACAGGATCAACCTGAACAA+CGG | - | chr2_4:59326229-59326248 | None:intergenic | 40.0% | |
| !!! | TCAGGTTGATCCTGTTTTTG+AGG | + | chr2_4:59326233-59326252 | Msa0338780:CDS | 40.0% |
| !!! | CAGGTTGATCCTGTTTTTGA+GGG | + | chr2_4:59326234-59326253 | Msa0338780:CDS | 40.0% |
| !!! | TGATCCTGTTTTTGAGGGAT+TGG | + | chr2_4:59326239-59326258 | Msa0338780:CDS | 40.0% |
| !! | TTTTTGAGGGATTGGATGGT+GGG | + | chr2_4:59326247-59326266 | Msa0338780:CDS | 40.0% |
| TTACCCTTCACATTTGCAAC+CGG | - | chr2_4:59326297-59326316 | None:intergenic | 40.0% | |
| ATGACATATGGACCTTCCTT+AGG | + | chr2_4:59326316-59326335 | Msa0338780:CDS | 40.0% | |
| TCACAAGGATACGTTTCCAT+TGG | + | chr2_4:59326369-59326388 | Msa0338780:CDS | 40.0% | |
| TCCGTTTCCATTACCATTCT+GGG | - | chr2_4:59326520-59326539 | None:intergenic | 40.0% | |
| AGTTGTAGAGCCATTTGCAT+GGG | - | chr2_4:59326547-59326566 | None:intergenic | 40.0% | |
| TGTTACCATTCTCCTACTGA+AGG | + | chr2_4:59326748-59326767 | Msa0338780:intron | 40.0% | |
| GATTTGGCAGAGAATTTAGC+AGG | + | chr2_4:59326853-59326872 | Msa0338780:CDS | 40.0% | |
| ! | GTTGGAAAATTTAGAGCGGA+TGG | + | chr2_4:59326889-59326908 | Msa0338780:CDS | 40.0% |
| !! | TAGGGAAGAAGAGTATTGTG+GGG | - | chr2_4:59326960-59326979 | None:intergenic | 40.0% |
| TCTTCCCTAAACACTCTTCT+CGG | + | chr2_4:59326971-59326990 | Msa0338780:CDS | 40.0% | |
| ! | TCAACGTCTCTCTTTTCTGA+AGG | - | chr2_4:59327009-59327028 | None:intergenic | 40.0% |
| !! | GAGAGACGTTGATTCATTAG+TGG | + | chr2_4:59327017-59327036 | Msa0338780:CDS | 40.0% |
| ACAGGATCAACCTGAACAAC+GGG | - | chr2_4:59326228-59326247 | None:intergenic | 45.0% | |
| CCATCCAATCCCTCAAAAAC+AGG | - | chr2_4:59326246-59326265 | None:intergenic | 45.0% | |
| !!! | CCTGTTTTTGAGGGATTGGA+TGG | + | chr2_4:59326243-59326262 | Msa0338780:CDS | 45.0% |
| !! | GTTTTTGAGGGATTGGATGG+TGG | + | chr2_4:59326246-59326265 | Msa0338780:CDS | 45.0% |
| !! | GGAATGGTAGCCTTGTTAAG+TGG | + | chr2_4:59326268-59326287 | Msa0338780:CDS | 45.0% |
| !! | TAGCCTTGTTAAGTGGAACC+CGG | + | chr2_4:59326275-59326294 | Msa0338780:CDS | 45.0% |
| AACCCGGTTGCAAATGTGAA+GGG | + | chr2_4:59326291-59326310 | Msa0338780:CDS | 45.0% | |
| TACCCTTCACATTTGCAACC+GGG | - | chr2_4:59326296-59326315 | None:intergenic | 45.0% | |
| ATGGACCTTCCTTAGGACAA+TGG | + | chr2_4:59326323-59326342 | Msa0338780:CDS | 45.0% | |
| CACATCCATTGTCCTAAGGA+AGG | - | chr2_4:59326331-59326350 | None:intergenic | 45.0% | |
| TGTGCATGGTTCACAACCAA+TGG | - | chr2_4:59326388-59326407 | None:intergenic | 45.0% | |
| TTGGTTGTGAACCATGCACA+AGG | + | chr2_4:59326388-59326407 | Msa0338780:CDS | 45.0% | |
| AGCATGAAAGAGAGGGAAGA+TGG | + | chr2_4:59326427-59326446 | Msa0338780:CDS | 45.0% | |
| ATGAAAGAGAGGGAAGATGG+TGG | + | chr2_4:59326430-59326449 | Msa0338780:CDS | 45.0% | |
| AAGACCACACTCCTTTGCTT+TGG | - | chr2_4:59326466-59326485 | None:intergenic | 45.0% | |
| ! | AAGGAGTGTGGTCTTCACAA+AGG | + | chr2_4:59326471-59326490 | Msa0338780:CDS | 45.0% |
| !! | GCCCAGAATGGTAATGGAAA+CGG | + | chr2_4:59326516-59326535 | Msa0338780:CDS | 45.0% |
| CTCCGTTTCCATTACCATTC+TGG | - | chr2_4:59326521-59326540 | None:intergenic | 45.0% | |
| CAGTTGTAGAGCCATTTGCA+TGG | - | chr2_4:59326548-59326567 | None:intergenic | 45.0% | |
| ! | TGCAAATGGCTCTACAACTG+TGG | + | chr2_4:59326548-59326567 | Msa0338780:CDS | 45.0% |
| ATGCACCTTCAGTAGGAGAA+TGG | - | chr2_4:59326756-59326775 | None:intergenic | 45.0% | |
| ACAGGATCAACCTGAACAAC+GGG | - | chr2_4:59326228-59326247 | None:intergenic | 45.0% | |
| CCATCCAATCCCTCAAAAAC+AGG | - | chr2_4:59326246-59326265 | None:intergenic | 45.0% | |
| !!! | CCTGTTTTTGAGGGATTGGA+TGG | + | chr2_4:59326243-59326262 | Msa0338780:CDS | 45.0% |
| !! | GTTTTTGAGGGATTGGATGG+TGG | + | chr2_4:59326246-59326265 | Msa0338780:CDS | 45.0% |
| !! | GGAATGGTAGCCTTGTTAAG+TGG | + | chr2_4:59326268-59326287 | Msa0338780:CDS | 45.0% |
| !! | TAGCCTTGTTAAGTGGAACC+CGG | + | chr2_4:59326275-59326294 | Msa0338780:CDS | 45.0% |
| AACCCGGTTGCAAATGTGAA+GGG | + | chr2_4:59326291-59326310 | Msa0338780:CDS | 45.0% | |
| TACCCTTCACATTTGCAACC+GGG | - | chr2_4:59326296-59326315 | None:intergenic | 45.0% | |
| ATGGACCTTCCTTAGGACAA+TGG | + | chr2_4:59326323-59326342 | Msa0338780:CDS | 45.0% | |
| CACATCCATTGTCCTAAGGA+AGG | - | chr2_4:59326331-59326350 | None:intergenic | 45.0% | |
| TGTGCATGGTTCACAACCAA+TGG | - | chr2_4:59326388-59326407 | None:intergenic | 45.0% | |
| TTGGTTGTGAACCATGCACA+AGG | + | chr2_4:59326388-59326407 | Msa0338780:CDS | 45.0% | |
| AGCATGAAAGAGAGGGAAGA+TGG | + | chr2_4:59326427-59326446 | Msa0338780:CDS | 45.0% | |
| ATGAAAGAGAGGGAAGATGG+TGG | + | chr2_4:59326430-59326449 | Msa0338780:CDS | 45.0% | |
| AAGACCACACTCCTTTGCTT+TGG | - | chr2_4:59326466-59326485 | None:intergenic | 45.0% | |
| ! | AAGGAGTGTGGTCTTCACAA+AGG | + | chr2_4:59326471-59326490 | Msa0338780:CDS | 45.0% |
| !! | GCCCAGAATGGTAATGGAAA+CGG | + | chr2_4:59326516-59326535 | Msa0338780:CDS | 45.0% |
| CTCCGTTTCCATTACCATTC+TGG | - | chr2_4:59326521-59326540 | None:intergenic | 45.0% | |
| CAGTTGTAGAGCCATTTGCA+TGG | - | chr2_4:59326548-59326567 | None:intergenic | 45.0% | |
| ! | TGCAAATGGCTCTACAACTG+TGG | + | chr2_4:59326548-59326567 | Msa0338780:CDS | 45.0% |
| ATGCACCTTCAGTAGGAGAA+TGG | - | chr2_4:59326756-59326775 | None:intergenic | 45.0% | |
| CAGAGAAAAGATCAGTCGCC+TGG | + | chr2_4:59326186-59326205 | Msa0338780:CDS | 50.0% | |
| AAGATCAGTCGCCTGGTACT+AGG | + | chr2_4:59326193-59326212 | Msa0338780:CDS | 50.0% | |
| GGTACTTCAGACCTAGTACC+AGG | - | chr2_4:59326207-59326226 | None:intergenic | 50.0% | |
| ! | GTCTGAAGTACCCGTTGTTC+AGG | + | chr2_4:59326215-59326234 | Msa0338780:CDS | 50.0% |
| CAACCGGGTTCCACTTAACA+AGG | - | chr2_4:59326281-59326300 | None:intergenic | 50.0% | |
| GAACCCGGTTGCAAATGTGA+AGG | + | chr2_4:59326290-59326309 | Msa0338780:CDS | 50.0% | |
| CAGGCACATCCATTGTCCTA+AGG | - | chr2_4:59326335-59326354 | None:intergenic | 50.0% | |
| TCATGCTGACCAGGCAAAAC+TGG | - | chr2_4:59326414-59326433 | None:intergenic | 50.0% | |
| CCTGGTCAGCATGAAAGAGA+GGG | + | chr2_4:59326420-59326439 | Msa0338780:CDS | 50.0% | |
| ! | AAAGAGAGGGAAGATGGTGG+TGG | + | chr2_4:59326433-59326452 | Msa0338780:CDS | 50.0% |
| ! | AAGAGAGGGAAGATGGTGGT+GGG | + | chr2_4:59326434-59326453 | Msa0338780:CDS | 50.0% |
| GATGCCAAAGCAAAGGAGTG+TGG | + | chr2_4:59326459-59326478 | Msa0338780:CDS | 50.0% | |
| GATGCTGCCCAGAATGGTAA+TGG | + | chr2_4:59326510-59326529 | Msa0338780:CDS | 50.0% | |
| GCTCAAGCTGACCACATTCT+GGG | - | chr2_4:59326589-59326608 | None:intergenic | 50.0% | |
| TGCTCAAGCTGACCACATTC+TGG | - | chr2_4:59326590-59326609 | None:intergenic | 50.0% | |
| AGAATGTGGTCAGCTTGAGC+AGG | + | chr2_4:59326589-59326608 | Msa0338780:CDS | 50.0% | |
| GAATGTGGTCAGCTTGAGCA+GGG | + | chr2_4:59326590-59326609 | Msa0338780:CDS | 50.0% | |
| ! | CAACGATCCAGGGCTCTTTT+CGG | - | chr2_4:59326647-59326666 | None:intergenic | 50.0% |
| GCATAGAGCACAACGATCCA+GGG | - | chr2_4:59326657-59326676 | None:intergenic | 50.0% | |
| TGCATAGAGCACAACGATCC+AGG | - | chr2_4:59326658-59326677 | None:intergenic | 50.0% | |
| TCGTTGTGCTCTATGCACCA+TGG | + | chr2_4:59326661-59326680 | Msa0338780:CDS | 50.0% | |
| GCAGAGAATTTAGCAGGGTC+AGG | + | chr2_4:59326859-59326878 | Msa0338780:CDS | 50.0% | |
| TTTAGCAGGGTCAGGAGTGA+AGG | + | chr2_4:59326867-59326886 | Msa0338780:CDS | 50.0% | |
| TGCGAAGAATGAACTGGGGT+TGG | + | chr2_4:59326927-59326946 | Msa0338780:CDS | 50.0% | |
| GCGAAGAATGAACTGGGGTT+GGG | + | chr2_4:59326928-59326947 | Msa0338780:CDS | 50.0% | |
| !! | TCGGCCGAGAAGAGTGTTTA+GGG | - | chr2_4:59326978-59326997 | None:intergenic | 50.0% |
| !! | ATCGGCCGAGAAGAGTGTTT+AGG | - | chr2_4:59326979-59326998 | None:intergenic | 50.0% |
| CAGAGAAAAGATCAGTCGCC+TGG | + | chr2_4:59326186-59326205 | Msa0338780:CDS | 50.0% | |
| AAGATCAGTCGCCTGGTACT+AGG | + | chr2_4:59326193-59326212 | Msa0338780:CDS | 50.0% | |
| GGTACTTCAGACCTAGTACC+AGG | - | chr2_4:59326207-59326226 | None:intergenic | 50.0% | |
| ! | GTCTGAAGTACCCGTTGTTC+AGG | + | chr2_4:59326215-59326234 | Msa0338780:CDS | 50.0% |
| CAACCGGGTTCCACTTAACA+AGG | - | chr2_4:59326281-59326300 | None:intergenic | 50.0% | |
| GAACCCGGTTGCAAATGTGA+AGG | + | chr2_4:59326290-59326309 | Msa0338780:CDS | 50.0% | |
| CAGGCACATCCATTGTCCTA+AGG | - | chr2_4:59326335-59326354 | None:intergenic | 50.0% | |
| TCATGCTGACCAGGCAAAAC+TGG | - | chr2_4:59326414-59326433 | None:intergenic | 50.0% | |
| CCTGGTCAGCATGAAAGAGA+GGG | + | chr2_4:59326420-59326439 | Msa0338780:CDS | 50.0% | |
| ! | AAAGAGAGGGAAGATGGTGG+TGG | + | chr2_4:59326433-59326452 | Msa0338780:CDS | 50.0% |
| ! | AAGAGAGGGAAGATGGTGGT+GGG | + | chr2_4:59326434-59326453 | Msa0338780:CDS | 50.0% |
| GATGCCAAAGCAAAGGAGTG+TGG | + | chr2_4:59326459-59326478 | Msa0338780:CDS | 50.0% | |
| GATGCTGCCCAGAATGGTAA+TGG | + | chr2_4:59326510-59326529 | Msa0338780:CDS | 50.0% | |
| GCTCAAGCTGACCACATTCT+GGG | - | chr2_4:59326589-59326608 | None:intergenic | 50.0% | |
| TGCTCAAGCTGACCACATTC+TGG | - | chr2_4:59326590-59326609 | None:intergenic | 50.0% | |
| AGAATGTGGTCAGCTTGAGC+AGG | + | chr2_4:59326589-59326608 | Msa0338780:CDS | 50.0% | |
| GAATGTGGTCAGCTTGAGCA+GGG | + | chr2_4:59326590-59326609 | Msa0338780:CDS | 50.0% | |
| ! | CAACGATCCAGGGCTCTTTT+CGG | - | chr2_4:59326647-59326666 | None:intergenic | 50.0% |
| GCATAGAGCACAACGATCCA+GGG | - | chr2_4:59326657-59326676 | None:intergenic | 50.0% | |
| TGCATAGAGCACAACGATCC+AGG | - | chr2_4:59326658-59326677 | None:intergenic | 50.0% | |
| TCGTTGTGCTCTATGCACCA+TGG | + | chr2_4:59326661-59326680 | Msa0338780:CDS | 50.0% | |
| GCAGAGAATTTAGCAGGGTC+AGG | + | chr2_4:59326859-59326878 | Msa0338780:CDS | 50.0% | |
| TTTAGCAGGGTCAGGAGTGA+AGG | + | chr2_4:59326867-59326886 | Msa0338780:CDS | 50.0% | |
| TGCGAAGAATGAACTGGGGT+TGG | + | chr2_4:59326927-59326946 | Msa0338780:CDS | 50.0% | |
| GCGAAGAATGAACTGGGGTT+GGG | + | chr2_4:59326928-59326947 | Msa0338780:CDS | 50.0% | |
| !! | TCGGCCGAGAAGAGTGTTTA+GGG | - | chr2_4:59326978-59326997 | None:intergenic | 50.0% |
| !! | ATCGGCCGAGAAGAGTGTTT+AGG | - | chr2_4:59326979-59326998 | None:intergenic | 50.0% |
| !! | GAGGGATTGGATGGTGGGAA+TGG | + | chr2_4:59326252-59326271 | Msa0338780:CDS | 55.0% |
| !! | GGCAAAACTGGCCTTGTGCA+TGG | - | chr2_4:59326402-59326421 | None:intergenic | 55.0% |
| ! | TGCACAAGGCCAGTTTTGCC+TGG | + | chr2_4:59326402-59326421 | Msa0338780:CDS | 55.0% |
| GCCTGGTCAGCATGAAAGAG+AGG | + | chr2_4:59326419-59326438 | Msa0338780:CDS | 55.0% | |
| CCCTCTCTTTCATGCTGACC+AGG | - | chr2_4:59326423-59326442 | None:intergenic | 55.0% | |
| GTGGGAGGATGCCAAAGCAA+AGG | + | chr2_4:59326452-59326471 | Msa0338780:CDS | 55.0% | |
| CAGGATGATGCTGCCCAGAA+TGG | + | chr2_4:59326504-59326523 | Msa0338780:CDS | 55.0% | |
| AACGGAGTCGCCCATGCAAA+TGG | + | chr2_4:59326534-59326553 | Msa0338780:CDS | 55.0% | |
| !! | GAGGGATTGGATGGTGGGAA+TGG | + | chr2_4:59326252-59326271 | Msa0338780:CDS | 55.0% |
| !! | GGCAAAACTGGCCTTGTGCA+TGG | - | chr2_4:59326402-59326421 | None:intergenic | 55.0% |
| ! | TGCACAAGGCCAGTTTTGCC+TGG | + | chr2_4:59326402-59326421 | Msa0338780:CDS | 55.0% |
| GCCTGGTCAGCATGAAAGAG+AGG | + | chr2_4:59326419-59326438 | Msa0338780:CDS | 55.0% | |
| CCCTCTCTTTCATGCTGACC+AGG | - | chr2_4:59326423-59326442 | None:intergenic | 55.0% | |
| GTGGGAGGATGCCAAAGCAA+AGG | + | chr2_4:59326452-59326471 | Msa0338780:CDS | 55.0% | |
| CAGGATGATGCTGCCCAGAA+TGG | + | chr2_4:59326504-59326523 | Msa0338780:CDS | 55.0% | |
| AACGGAGTCGCCCATGCAAA+TGG | + | chr2_4:59326534-59326553 | Msa0338780:CDS | 55.0% | |
| !! | AGAGGGAAGATGGTGGTGGG+AGG | + | chr2_4:59326437-59326456 | Msa0338780:CDS | 60.0% |
| TGGAGGACCGAAAAGAGCCC+TGG | + | chr2_4:59326637-59326656 | Msa0338780:CDS | 60.0% | |
| !! | ACCATGGTGCCGCTTCTGTC+AGG | + | chr2_4:59326677-59326696 | Msa0338780:CDS | 60.0% |
| ACCTGACAGAAGCGGCACCA+TGG | - | chr2_4:59326681-59326700 | None:intergenic | 60.0% | |
| GCAGGGTCAGGAGTGAAGGT+TGG | + | chr2_4:59326871-59326890 | Msa0338780:CDS | 60.0% | |
| !! | AGAGGGAAGATGGTGGTGGG+AGG | + | chr2_4:59326437-59326456 | Msa0338780:CDS | 60.0% |
| TGGAGGACCGAAAAGAGCCC+TGG | + | chr2_4:59326637-59326656 | Msa0338780:CDS | 60.0% | |
| !! | ACCATGGTGCCGCTTCTGTC+AGG | + | chr2_4:59326677-59326696 | Msa0338780:CDS | 60.0% |
| ACCTGACAGAAGCGGCACCA+TGG | - | chr2_4:59326681-59326700 | None:intergenic | 60.0% | |
| GCAGGGTCAGGAGTGAAGGT+TGG | + | chr2_4:59326871-59326890 | Msa0338780:CDS | 60.0% | |
| GTGGTCAGCTTGAGCAGGGC+TGG | + | chr2_4:59326594-59326613 | Msa0338780:CDS | 65.0% | |
| GTGGTCAGCTTGAGCAGGGC+TGG | + | chr2_4:59326594-59326613 | Msa0338780:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_4 | gene | 59326165 | 59327062 | 59326165 | ID=Msa0338780;Name=Msa0338780 |
| chr2_4 | mRNA | 59326165 | 59327062 | 59326165 | ID=Msa0338780-mRNA-1;Parent=Msa0338780;Name=Msa0338780-mRNA-1;_AED=0.39;_eAED=0.39;_QI=0|0|0|1|1|0.5|2|0|254 |
| chr2_4 | exon | 59326165 | 59326698 | 59326165 | ID=Msa0338780-mRNA-1:exon:18412;Parent=Msa0338780-mRNA-1 |
| chr2_4 | exon | 59326832 | 59327062 | 59326832 | ID=Msa0338780-mRNA-1:exon:18413;Parent=Msa0338780-mRNA-1 |
| chr2_4 | CDS | 59326165 | 59326698 | 59326165 | ID=Msa0338780-mRNA-1:cds;Parent=Msa0338780-mRNA-1 |
| chr2_4 | CDS | 59326832 | 59327062 | 59326832 | ID=Msa0338780-mRNA-1:cds;Parent=Msa0338780-mRNA-1 |
| Gene Sequence |
| Protein sequence |
