Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0196710 | XP_013462840.1 | 97.228 | 469 | 13 | 0 | 42 | 510 | 1 | 469 | 0.0 | 950 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0196710 | sp|P92980|APR3_ARATH | 78.876 | 445 | 77 | 4 | 71 | 510 | 26 | 458 | 0.0 | 724 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0196710 | A0A072V4H5 | 97.228 | 469 | 13 | 0 | 42 | 510 | 1 | 469 | 0.0 | 950 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0196700 | Msa0196710 | 0.968400 | 1.267211e-128 | -8.615850e-47 |
| Msa0196710 | Msa0238580 | 0.980481 | 2.558027e-150 | -8.615850e-47 |
| Msa0196710 | Msa0276150 | 0.985245 | 5.680538e-163 | -8.615850e-47 |
| Msa0196710 | Msa0338780 | 0.891796 | 2.862613e-74 | -8.615850e-47 |
| Msa0196710 | Msa0417000 | 0.806008 | 1.013131e-49 | -8.615850e-47 |
| Msa0196710 | Msa0786970 | 0.817247 | 3.641215e-52 | -8.615850e-47 |
| Msa0196710 | Msa0822380 | 0.841921 | 3.543331e-58 | -8.615850e-47 |
| Msa0196710 | Msa1084630 | 0.841202 | 5.482969e-58 | -8.615850e-47 |
| Msa0196710 | Msa1204260 | 0.806380 | 8.461132e-50 | -8.615850e-47 |
| Msa0196710 | Msa1400330 | 0.839985 | 1.141651e-57 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0196710 | MtrunA17_Chr2g0288581 | 97.228 | 469 | 13 | 0 | 42 | 510 | 1 | 469 | 0.0 | 950 |
| Msa0196710 | MtrunA17_Chr1g0189051 | 78.667 | 75 | 16 | 0 | 435 | 509 | 2 | 76 | 3.98e-31 | 115 |
| Msa0196710 | MtrunA17_Chr3g0079881 | 80.000 | 70 | 14 | 0 | 441 | 510 | 13 | 82 | 1.10e-29 | 111 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0196710 | AT4G21990.1 | 78.876 | 445 | 77 | 4 | 71 | 510 | 26 | 458 | 0.0 | 724 |
| Msa0196710 | AT4G04610.1 | 76.703 | 455 | 91 | 5 | 63 | 510 | 19 | 465 | 0.0 | 703 |
| Msa0196710 | AT1G62180.2 | 73.191 | 470 | 102 | 5 | 42 | 510 | 1 | 447 | 0.0 | 692 |
| Msa0196710 | AT1G62180.1 | 73.305 | 472 | 105 | 5 | 42 | 510 | 1 | 454 | 0.0 | 685 |
| Msa0196710 | AT4G21990.2 | 81.818 | 286 | 40 | 3 | 71 | 351 | 61 | 339 | 3.47e-168 | 479 |
Find 164 sgRNAs with CRISPR-Local
Find 232 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGGCATTTATTAATGCTTTA+AGG | 0.124902 | 2_1:+14132320 | Msa0196710:CDS |
| AGTTGTTTATTCACTGATTT+TGG | 0.132856 | 2_1:+14132396 | Msa0196710:three_prime_UTR |
| AATTGGTTCGTTAAGAATTT+TGG | 0.144905 | 2_1:+14130132 | Msa0196710:CDS |
| TCAAACAATCTGTATGTTTC+TGG | 0.150664 | 2_1:-14131259 | None:intergenic |
| CTCCGTTTCCATTACCATTC+TGG | 0.158439 | 2_1:-14131801 | None:intergenic |
| ATGATATTGCTATTGCTTTC+AGG | 0.175353 | 2_1:+14130482 | Msa0196710:CDS |
| CCCTTAAGAGCTCTTCTTAA+AGG | 0.194775 | 2_1:-14131424 | None:intergenic |
| TGCTCAAGCTGACCACATTC+TGG | 0.202249 | 2_1:-14131870 | None:intergenic |
| CCCCGATGCGGTTGAGGTTC+AGG | 0.235666 | 2_1:+14131324 | Msa0196710:CDS |
| ACGTTTGTGTTCTGTGTTTC+AGG | 0.240697 | 2_1:-14132796 | None:intergenic |
| GACAAGGCTCTTGAGAAATT+TGG | 0.259730 | 2_1:+14130457 | Msa0196710:CDS |
| AATTGAGAATCTAGCTAAAT+TGG | 0.278779 | 2_1:+14131900 | Msa0196710:CDS |
| TTTACCTCAAAGACGTTCTT+TGG | 0.283907 | 2_1:+14130183 | Msa0196710:CDS |
| CTTATGTGGCTTGAGGTAAT+TGG | 0.288137 | 2_1:-14129747 | None:intergenic |
| ATTTGACGGGTAGGCCATTC+AGG | 0.289307 | 2_1:+14131206 | Msa0196710:CDS |
| TCATGCTGACCAGGCAAAAC+TGG | 0.308335 | 2_1:-14131694 | None:intergenic |
| ATCAAGAGTGCTGCAGAATA+AGG | 0.321572 | 2_1:+14131392 | Msa0196710:CDS |
| GTCTGAAGTACCCGTTGTTC+AGG | 0.324589 | 2_1:+14131498 | Msa0196710:CDS |
| ACCTTTAAGAAGAGCTCTTA+AGG | 0.331966 | 2_1:+14131423 | Msa0196710:CDS |
| GGAGGAATCATATGTTGATT+TGG | 0.337432 | 2_1:+14132120 | Msa0196710:CDS |
| TGCTTCACCTCTTGAGATAA+TGG | 0.339618 | 2_1:+14130435 | Msa0196710:CDS |
| GATATTCGTACATGAAAGTT+TGG | 0.350129 | 2_1:-14132631 | None:intergenic |
| ATCGGCCGAGAAGAGTGTTT+AGG | 0.350482 | 2_1:-14132259 | None:intergenic |
| GAGAGACGTTGATTCATTAC+TGG | 0.351200 | 2_1:+14132300 | Msa0196710:CDS |
| TCGGCCGAGAAGAGTGTTTA+GGG | 0.355914 | 2_1:-14132258 | None:intergenic |
| CCCTGAACCTCAACCGCATC+GGG | 0.366041 | 2_1:-14131325 | None:intergenic |
| CCCGATGCGGTTGAGGTTCA+GGG | 0.369744 | 2_1:+14131325 | Msa0196710:CDS |
| TGTAGAACATCTCTCTGTAT+AGG | 0.374816 | 2_1:+14132475 | Msa0196710:three_prime_UTR |
| GGTTTGAGAGCATGGATAAC+TGG | 0.378025 | 2_1:+14131445 | Msa0196710:CDS |
| TCTTCCCTAAACACTCTTCT+CGG | 0.378246 | 2_1:+14132254 | Msa0196710:CDS |
| GCCATTCAGGGTGTTCAGTC+TGG | 0.379663 | 2_1:+14131219 | Msa0196710:CDS |
| CCCTCTCTTTCATGCTGACC+AGG | 0.381378 | 2_1:-14131703 | None:intergenic |
| GTGGCGCGTGGTGTTTGTTT+TGG | 0.382844 | 2_1:-14129711 | None:intergenic |
| TTTCTAGATGAGTAGAGTTA+TGG | 0.384640 | 2_1:+14132562 | Msa0196710:three_prime_UTR |
| TCACAAAGGTAATTTGAAAC+AGG | 0.394072 | 2_1:+14131768 | Msa0196710:CDS |
| TGCATAGAGCACAACGATCC+AGG | 0.397198 | 2_1:-14131938 | None:intergenic |
| TCCGTTTCCATTACCATTCT+GGG | 0.399151 | 2_1:-14131800 | None:intergenic |
| TGTGAATGCAATGCATTAAC+AGG | 0.400904 | 2_1:-14131634 | None:intergenic |
| GCAGAGAATTTAGCAGGGTC+AGG | 0.405699 | 2_1:+14132142 | Msa0196710:CDS |
| GAAGTAACGGCGAGAGCCAT+TGG | 0.407635 | 2_1:-14129925 | None:intergenic |
| GAATGTGGGAATGACAGTTT+TGG | 0.409739 | 2_1:+14132429 | Msa0196710:three_prime_UTR |
| TTGGAGAGAAATGTTTCATC+TGG | 0.411070 | 2_1:+14130151 | Msa0196710:CDS |
| AAGACCACACTCCTTTGCTT+TGG | 0.412645 | 2_1:-14131746 | None:intergenic |
| GCTCAAGCTGACCACATTCT+GGG | 0.413593 | 2_1:-14131869 | None:intergenic |
| TTACCCTTCACATTTGCAAC+CGG | 0.414227 | 2_1:-14131577 | None:intergenic |
| CCTTTAAGAAGAGCTCTTAA+GGG | 0.416945 | 2_1:+14131424 | Msa0196710:CDS |
| AATTGAATACGCACATTTGA+CGG | 0.418233 | 2_1:+14131192 | Msa0196710:CDS |
| GTGGTCAGCTTGAGCAGGGC+TGG | 0.421089 | 2_1:+14131877 | Msa0196710:CDS |
| AGAATATGCGAAGAGTGAAC+TGG | 0.421115 | 2_1:+14132204 | Msa0196710:CDS |
| ATTACAAATTATAGAGTTTG+TGG | 0.425688 | 2_1:+14132825 | Msa0196710:three_prime_UTR |
| ATTGAACCTAGACGTGATTA+CGG | 0.426023 | 2_1:-14129784 | None:intergenic |
| CTCTTAAGGGTTTGAGAGCA+TGG | 0.434805 | 2_1:+14131437 | Msa0196710:CDS |
| TTCACCAAAGAACGTCTTTG+AGG | 0.443814 | 2_1:-14130187 | None:intergenic |
| AAGATCAGTCGCCTGGTACT+AGG | 0.444407 | 2_1:+14131476 | Msa0196710:CDS |
| ACAGGATCAACCTGAACAAC+GGG | 0.450053 | 2_1:-14131508 | None:intergenic |
| TGCGAAGAGTGAACTGGGGT+TGG | 0.451563 | 2_1:+14132210 | Msa0196710:CDS |
| GATTTGGCAGAGAATTTAGC+AGG | 0.459112 | 2_1:+14132136 | Msa0196710:CDS |
| AACGGAGTCGCCCATGCAAA+TGG | 0.462572 | 2_1:+14131817 | Msa0196710:CDS |
| AAAGAGAGGGAAGATGGTGG+TGG | 0.469201 | 2_1:+14131716 | Msa0196710:CDS |
| GCGAAGAGTGAACTGGGGTT+GGG | 0.470355 | 2_1:+14132211 | Msa0196710:CDS |
| ATGTGAAGGGTAATGACATA+TGG | 0.471063 | 2_1:+14131587 | Msa0196710:CDS |
| ACCATGGTGCCGCTTCTGTC+AGG | 0.471836 | 2_1:+14131960 | Msa0196710:CDS |
| AGAATGTGGTCAGCTTGAGC+AGG | 0.476294 | 2_1:+14131872 | Msa0196710:CDS |
| AGAGATTATTGAGAAGGAAG+AGG | 0.479071 | 2_1:+14130378 | Msa0196710:intron |
| GAGGGATTGGATGGTGGGAA+TGG | 0.483411 | 2_1:+14131535 | Msa0196710:CDS |
| TTTAGGGAAGAAGAGTATTG+TGG | 0.485147 | 2_1:-14132242 | None:intergenic |
| TTTAGCAGGGTCAGGAGTGA+AGG | 0.486632 | 2_1:+14132150 | Msa0196710:CDS |
| ATGACATATGGACCTTCCTT+AGG | 0.487981 | 2_1:+14131599 | Msa0196710:CDS |
| TTAGGGAAGAAGAGTATTGT+GGG | 0.489577 | 2_1:-14132241 | None:intergenic |
| CAGGGATTAGTAAGAACAAA+GGG | 0.496123 | 2_1:+14131343 | Msa0196710:CDS |
| TCCAGACTGAACACCCTGAA+TGG | 0.499274 | 2_1:-14131220 | None:intergenic |
| CATGTTCCCCGATGCGGTTG+AGG | 0.501238 | 2_1:+14131318 | Msa0196710:CDS |
| TTCAGGTTCAAATTTCGTGA+TGG | 0.503048 | 2_1:-14132779 | None:intergenic |
| TCAGGTTCAAATTTCGTGAT+GGG | 0.503390 | 2_1:-14132778 | None:intergenic |
| TTACTTCATTCATTCTCCAA+TGG | 0.503658 | 2_1:+14129909 | Msa0196710:CDS |
| GTTGGAAAATTTAGAGCGGA+TGG | 0.504381 | 2_1:+14132172 | Msa0196710:CDS |
| AAATGTTTGTGATGCTTATG+TGG | 0.504614 | 2_1:-14129761 | None:intergenic |
| AAGAGAGGGAAGATGGTGGT+GGG | 0.506965 | 2_1:+14131717 | Msa0196710:CDS |
| ATTTGCAGAGATTATTGAGA+AGG | 0.507607 | 2_1:+14130372 | Msa0196710:intron |
| CAACCGGGTTCCACTTAACA+AGG | 0.507691 | 2_1:-14131561 | None:intergenic |
| TCACAAGGATACGTTTCCAT+TGG | 0.510148 | 2_1:+14131652 | Msa0196710:CDS |
| TGGAGGACCGAAAAGAGCCC+TGG | 0.510799 | 2_1:+14131920 | Msa0196710:CDS |
| AACTCCTTCTTCTCTCGTAT+CGG | 0.515943 | 2_1:+14129976 | Msa0196710:CDS |
| AGATCCGATACGAGAGAAGA+AGG | 0.516575 | 2_1:-14129980 | None:intergenic |
| TTTGACGGGTAGGCCATTCA+GGG | 0.520433 | 2_1:+14131207 | Msa0196710:CDS |
| AGAGGGAAGATGGTGGTGGG+AGG | 0.521000 | 2_1:+14131720 | Msa0196710:CDS |
| TCCCTGAACCTCAACCGCAT+CGG | 0.522772 | 2_1:-14131326 | None:intergenic |
| AGCATGAAAGAGAGGGAAGA+TGG | 0.523785 | 2_1:+14131710 | Msa0196710:CDS |
| GGTGATATTTGATACGTGAT+TGG | 0.524738 | 2_1:-14132735 | None:intergenic |
| ATGAAATGAATGAAAAGAAG+AGG | 0.524879 | 2_1:-14129850 | None:intergenic |
| GCCCAGAATGGTAATGGAAA+CGG | 0.529855 | 2_1:+14131799 | Msa0196710:CDS |
| GGGTGATGCGAGGAATTTGA+AGG | 0.532368 | 2_1:-14129810 | None:intergenic |
| ATTGAATACGCACATTTGAC+GGG | 0.532538 | 2_1:+14131193 | Msa0196710:CDS |
| TACCCTTCACATTTGCAACC+GGG | 0.532628 | 2_1:-14131576 | None:intergenic |
| GGGTGTTCAGTCTGGACACT+GGG | 0.534085 | 2_1:+14131227 | Msa0196710:CDS |
| GCAGGGTCAGGAGTGAAGGT+TGG | 0.536117 | 2_1:+14132154 | Msa0196710:CDS |
| GTGATCGTTTGTGACGTGAT+AGG | 0.538173 | 2_1:-14132756 | None:intergenic |
| GATGCTGCCCAGAATGGTAA+TGG | 0.542560 | 2_1:+14131793 | Msa0196710:CDS |
| TTTGGCACTTCACTCGAATG+TGG | 0.545376 | 2_1:+14132414 | Msa0196710:three_prime_UTR |
| AAGGTTCCATCACACAATAC+TGG | 0.546306 | 2_1:+14132368 | Msa0196710:three_prime_UTR |
| TGAGAATCTAGCTAAATTGG+AGG | 0.548731 | 2_1:+14131903 | Msa0196710:CDS |
| TCAAAGACGTTCTTTGGTGA+AGG | 0.549369 | 2_1:+14130189 | Msa0196710:CDS |
| GGCAAAACTGGCCTTGTGCA+TGG | 0.554255 | 2_1:-14131682 | None:intergenic |
| GATGCAGTTGAGAAGCGCTA+TGG | 0.556616 | 2_1:+14131280 | Msa0196710:CDS |
| TAAATTCTTACAGGCTATGG+AGG | 0.556676 | 2_1:+14132102 | Msa0196710:intron |
| TCAATTGAGTAATTTGCTCA+AGG | 0.556802 | 2_1:+14132349 | Msa0196710:three_prime_UTR |
| GAATATGCGAAGAGTGAACT+GGG | 0.557115 | 2_1:+14132205 | Msa0196710:CDS |
| GATTATTGAGAAGGAAGAGG+AGG | 0.560807 | 2_1:+14130381 | Msa0196710:CDS |
| TGTGCATGGTTCACAACCAA+TGG | 0.562874 | 2_1:-14131668 | None:intergenic |
| AGGGTGTTCAGTCTGGACAC+TGG | 0.563748 | 2_1:+14131226 | Msa0196710:CDS |
| TTGGCACTTCACTCGAATGT+GGG | 0.566178 | 2_1:+14132415 | Msa0196710:three_prime_UTR |
| CAGAGAAAAGATCAGTCGCC+TGG | 0.567745 | 2_1:+14131469 | Msa0196710:CDS |
| CAGGATGATGCTGCCCAGAA+TGG | 0.569226 | 2_1:+14131787 | Msa0196710:CDS |
| GGAATGGTAGCCTTGTTAAG+TGG | 0.569264 | 2_1:+14131551 | Msa0196710:CDS |
| ATTGCAAATTGTAGAGCTTG+TGG | 0.569425 | 2_1:-14132688 | None:intergenic |
| CAGTTGCAGAGCCATTTGCA+TGG | 0.569477 | 2_1:-14131828 | None:intergenic |
| TGTGATGCTTATGTGGCTTG+AGG | 0.570573 | 2_1:-14129754 | None:intergenic |
| ACATTTCCGTAATCACGTCT+AGG | 0.572718 | 2_1:+14129778 | Msa0196710:five_prime_UTR |
| AGTTGCAGAGCCATTTGCAT+GGG | 0.577844 | 2_1:-14131827 | None:intergenic |
| GCCTTGTCCATTATCTCAAG+AGG | 0.580800 | 2_1:-14130442 | None:intergenic |
| GCCTGGTCAGCATGAAAGAG+AGG | 0.586042 | 2_1:+14131702 | Msa0196710:CDS |
| CAGGCACATCCATTGTCCTA+AGG | 0.586597 | 2_1:-14131615 | None:intergenic |
| TAGGGAAGAAGAGTATTGTG+GGG | 0.586899 | 2_1:-14132240 | None:intergenic |
| GTGATGCGTAACGAGTTTAG+TGG | 0.588170 | 2_1:-14132713 | None:intergenic |
| CACATCCATTGTCCTAAGGA+AGG | 0.591182 | 2_1:-14131611 | None:intergenic |
| AATACGCACATTTGACGGGT+AGG | 0.605422 | 2_1:+14131197 | Msa0196710:CDS |
| AACAGGATCAACCTGAACAA+CGG | 0.605769 | 2_1:-14131509 | None:intergenic |
| GCATAGAGCACAACGATCCA+GGG | 0.606299 | 2_1:-14131937 | None:intergenic |
| GAATGTGGTCAGCTTGAGCA+GGG | 0.611848 | 2_1:+14131873 | Msa0196710:CDS |
| ATAAAGAGAAGGGTGATGCG+AGG | 0.613810 | 2_1:-14129820 | None:intergenic |
| CTATTAACGCTGAATCGCAA+AGG | 0.614292 | 2_1:+14130212 | Msa0196710:CDS |
| GGTACTTCAGACCTAGTACC+AGG | 0.615263 | 2_1:-14131487 | None:intergenic |
| ATGGACCTTCCTTAGGACAA+TGG | 0.618027 | 2_1:+14131606 | Msa0196710:CDS |
| AACTGATGAAGAAGAAGTAA+CGG | 0.620447 | 2_1:-14129938 | None:intergenic |
| GAACCCGGTTGCAAATGTGA+AGG | 0.621902 | 2_1:+14131573 | Msa0196710:CDS |
| GTGGGAGGATGCCAAAGCAA+AGG | 0.625285 | 2_1:+14131735 | Msa0196710:CDS |
| TAGCCTTGTTAAGTGGAACC+CGG | 0.629187 | 2_1:+14131558 | Msa0196710:CDS |
| TGAATACATGTTCCCCGATG+CGG | 0.631138 | 2_1:+14131312 | Msa0196710:CDS |
| GGATCTTCGTCTGAATCCAA+AGG | 0.631891 | 2_1:+14129997 | Msa0196710:CDS |
| TCAGGGATTAGTAAGAACAA+AGG | 0.636754 | 2_1:+14131342 | Msa0196710:CDS |
| CCTGGTCAGCATGAAAGAGA+GGG | 0.640837 | 2_1:+14131703 | Msa0196710:CDS |
| AGAGTGCTGCAGAATAAGGA+AGG | 0.642123 | 2_1:+14131396 | Msa0196710:CDS |
| GCAACGATAGTTGCTGCAAG+AGG | 0.642926 | 2_1:-14130250 | None:intergenic |
| GAAGGTTGGAAAATTTAGAG+CGG | 0.647488 | 2_1:+14132168 | Msa0196710:CDS |
| GTTAATGCATTGCATTCACA+AGG | 0.647862 | 2_1:+14131637 | Msa0196710:CDS |
| TTATTGCCAGTATTGTGTGA+TGG | 0.647994 | 2_1:-14132374 | None:intergenic |
| ACCTCTTGAGATAATGGACA+AGG | 0.650344 | 2_1:+14130441 | Msa0196710:CDS |
| AATTGGATGGTGAAAACTCG+TGG | 0.650741 | 2_1:-14129730 | None:intergenic |
| AAGGAGTGTGGTCTTCACAA+AGG | 0.651490 | 2_1:+14131754 | Msa0196710:CDS |
| GATGCCAAAGCAAAGGAGTG+TGG | 0.656499 | 2_1:+14131742 | Msa0196710:CDS |
| TTGGTTGTGAACCATGCACA+AGG | 0.657587 | 2_1:+14131671 | Msa0196710:CDS |
| AACCCGGTTGCAAATGTGAA+GGG | 0.659605 | 2_1:+14131574 | Msa0196710:CDS |
| TGGTGAAAACTCGTGGCGCG+TGG | 0.662859 | 2_1:-14129723 | None:intergenic |
| GCAGCAACTATCGTTGCACC+TGG | 0.665317 | 2_1:+14130256 | Msa0196710:CDS |
| TGTGGCTTGAGGTAATTGGA+TGG | 0.680666 | 2_1:-14129743 | None:intergenic |
| ACCTGACAGAAGCGGCACCA+TGG | 0.685537 | 2_1:-14131961 | None:intergenic |
| ATGAAAGAGAGGGAAGATGG+TGG | 0.685564 | 2_1:+14131713 | Msa0196710:CDS |
| ATTTGGCAGAGAATTTAGCA+GGG | 0.695699 | 2_1:+14132137 | Msa0196710:CDS |
| AAACACAGAACACAAACGTG+CGG | 0.711281 | 2_1:+14132800 | Msa0196710:three_prime_UTR |
| CGGGGAACATGTATTCAATG+CGG | 0.729164 | 2_1:-14131306 | None:intergenic |
| TCGTTGTGCTCTATGCACCA+TGG | 0.730304 | 2_1:+14131944 | Msa0196710:CDS |
| CCTGAACCTCAACCGCATCG+GGG | 0.743554 | 2_1:-14131324 | None:intergenic |
| AGGGATTAGTAAGAACAAAG+GGG | 0.746501 | 2_1:+14131344 | Msa0196710:CDS |
| AATATGCGAAGAGTGAACTG+GGG | 0.792612 | 2_1:+14132206 | Msa0196710:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTATTGAAGAAATTTTTA+TGG | + | chr2_1:14130288-14130307 | Msa0196710:intron | 10.0% |
| !!! | ATCAATTTTTTTATGAAAGT+AGG | - | chr2_1:14130959-14130978 | None:intergenic | 15.0% |
| !! | TGTTTAATCTAAATTCTTAC+AGG | + | chr2_1:14132093-14132112 | Msa0196710:intron | 20.0% |
| !!! | TAATTGTAATAGTCATTTTG+AGG | + | chr2_1:14132520-14132539 | Msa0196710:three_prime_UTR | 20.0% |
| !!! | AGGTTTTGATATAAAGAGAA+GGG | - | chr2_1:14129833-14129852 | None:intergenic | 25.0% |
| ! | ATGAAATGAATGAAAAGAAG+AGG | - | chr2_1:14129853-14129872 | None:intergenic | 25.0% |
| ! | TGATAAATTATTGCTACCTT+TGG | - | chr2_1:14130016-14130035 | None:intergenic | 25.0% |
| !!! | AACGAAATTCGTTGATTTTA+GGG | + | chr2_1:14130062-14130081 | Msa0196710:intron | 25.0% |
| !!! | AATTGGTTCGTTAAGAATTT+TGG | + | chr2_1:14130132-14130151 | Msa0196710:CDS | 25.0% |
| ! | TCAATAATAAAAAACGTACC+AGG | - | chr2_1:14130277-14130296 | None:intergenic | 25.0% |
| !!! | AGGTTGATTTGATTATTCTT+AGG | + | chr2_1:14130599-14130618 | Msa0196710:intron | 25.0% |
| !! | TTGATTTGATTATTCTTAGG+AGG | + | chr2_1:14130602-14130621 | Msa0196710:intron | 25.0% |
| !!! | AATGGATTTTGTATTTCACT+CGG | - | chr2_1:14130667-14130686 | None:intergenic | 25.0% |
| ! | GAATAGAGAATAGTATAGTT+TGG | + | chr2_1:14130705-14130724 | Msa0196710:intron | 25.0% |
| !!! | AATAGTATAGTTTGGCTTTA+TGG | + | chr2_1:14130713-14130732 | Msa0196710:intron | 25.0% |
| ! | ACAAAACAGGGAATAATTTA+CGG | + | chr2_1:14130774-14130793 | Msa0196710:intron | 25.0% |
| !! | TAAGCAAAGATTACATTTTG+AGG | + | chr2_1:14130836-14130855 | Msa0196710:intron | 25.0% |
| ! | TGCTTATAATAGTAACATGA+TGG | + | chr2_1:14130906-14130925 | Msa0196710:intron | 25.0% |
| ! | GCTTATAATAGTAACATGAT+GGG | + | chr2_1:14130907-14130926 | Msa0196710:intron | 25.0% |
| ! | CTTATAATAGTAACATGATG+GGG | + | chr2_1:14130908-14130927 | Msa0196710:intron | 25.0% |
| !!! | ATGAAAGTAGGTTTTTTTAC+TGG | - | chr2_1:14130947-14130966 | None:intergenic | 25.0% |
| ! | AGCTTATAACAAACAATAGT+TGG | - | chr2_1:14130983-14131002 | None:intergenic | 25.0% |
| !!! | ACTCTAAAGTTCTCTTTAAT+TGG | + | chr2_1:14131083-14131102 | Msa0196710:intron | 25.0% |
| ! | TAAAGTTCTCTTTAATTGGT+GGG | + | chr2_1:14131087-14131106 | Msa0196710:intron | 25.0% |
| !!! | AGTATTTTTGTTATTGCAGT+GGG | + | chr2_1:14131152-14131171 | Msa0196710:intron | 25.0% |
| ! | AATTGAGAATCTAGCTAAAT+TGG | + | chr2_1:14131900-14131919 | Msa0196710:CDS | 25.0% |
| !!! | TTTTCTGAAGGATACTTAAT+CGG | - | chr2_1:14132280-14132299 | None:intergenic | 25.0% |
| ! | TGGCATTTATTAATGCTTTA+AGG | + | chr2_1:14132320-14132339 | Msa0196710:CDS | 25.0% |
| !!! | AGTTGTTTATTCACTGATTT+TGG | + | chr2_1:14132396-14132415 | Msa0196710:three_prime_UTR | 25.0% |
| AAATGTTTGTGATGCTTATG+TGG | - | chr2_1:14129764-14129783 | None:intergenic | 30.0% | |
| !! | GAGGTTTTGATATAAAGAGA+AGG | - | chr2_1:14129834-14129853 | None:intergenic | 30.0% |
| TTACTTCATTCATTCTCCAA+TGG | + | chr2_1:14129909-14129928 | Msa0196710:CDS | 30.0% | |
| AACTGATGAAGAAGAAGTAA+CGG | - | chr2_1:14129941-14129960 | None:intergenic | 30.0% | |
| !!! | GAACGAAATTCGTTGATTTT+AGG | + | chr2_1:14130061-14130080 | Msa0196710:intron | 30.0% |
| ATTTGCAGAGATTATTGAGA+AGG | + | chr2_1:14130372-14130391 | Msa0196710:intron | 30.0% | |
| ! | ATGATATTGCTATTGCTTTC+AGG | + | chr2_1:14130482-14130501 | Msa0196710:CDS | 30.0% |
| !! | TGATTTTGTTGTGTAGAGTT+TGG | + | chr2_1:14130535-14130554 | Msa0196710:intron | 30.0% |
| !!! | AGTTTGGTTATGGTTTTGTT+GGG | + | chr2_1:14130551-14130570 | Msa0196710:intron | 30.0% |
| ! | TAGCATTTTTGTAACTGCTT+AGG | + | chr2_1:14130744-14130763 | Msa0196710:intron | 30.0% |
| TTAGGACAGTTTACAAAACA+GGG | + | chr2_1:14130762-14130781 | Msa0196710:intron | 30.0% | |
| CTAAAGTTCTCTTTAATTGG+TGG | + | chr2_1:14131086-14131105 | Msa0196710:intron | 30.0% | |
| !!! | GAGTATTTTTGTTATTGCAG+TGG | + | chr2_1:14131151-14131170 | Msa0196710:intron | 30.0% |
| !!! | GTATTTTTGTTATTGCAGTG+GGG | + | chr2_1:14131153-14131172 | Msa0196710:intron | 30.0% |
| AATTGAATACGCACATTTGA+CGG | + | chr2_1:14131192-14131211 | Msa0196710:CDS | 30.0% | |
| TCAAACAATCTGTATGTTTC+TGG | - | chr2_1:14131262-14131281 | None:intergenic | 30.0% | |
| ! | TCTTCTCATTTTATGAGGAT+GGG | + | chr2_1:14131368-14131387 | Msa0196710:CDS | 30.0% |
| ! | TCACAAAGGTAATTTGAAAC+AGG | + | chr2_1:14131768-14131787 | Msa0196710:CDS | 30.0% |
| TCATGCAATATAGAAAGTTC+AGG | - | chr2_1:14131998-14132017 | None:intergenic | 30.0% | |
| TAAAATAATGCACCTTCAGT+AGG | - | chr2_1:14132046-14132065 | None:intergenic | 30.0% | |
| ATCTAAATTCTTACAGGCTA+TGG | + | chr2_1:14132099-14132118 | Msa0196710:intron | 30.0% | |
| !! | TCAATTGAGTAATTTGCTCA+AGG | + | chr2_1:14132349-14132368 | Msa0196710:three_prime_UTR | 30.0% |
| !! | TTGTAATAGTCATTTTGAGG+TGG | + | chr2_1:14132523-14132542 | Msa0196710:three_prime_UTR | 30.0% |
| !!! | TGTAATAGTCATTTTGAGGT+GGG | + | chr2_1:14132524-14132543 | Msa0196710:three_prime_UTR | 30.0% |
| TTTCTAGATGAGTAGAGTTA+TGG | + | chr2_1:14132562-14132581 | Msa0196710:three_prime_UTR | 30.0% | |
| GATATTCGTACATGAAAGTT+TGG | - | chr2_1:14132634-14132653 | None:intergenic | 30.0% | |
| ATTGAACCTAGACGTGATTA+CGG | - | chr2_1:14129787-14129806 | None:intergenic | 35.0% | |
| ! | GTGTTTTCAGTTTCGCAAAT+TGG | + | chr2_1:14130115-14130134 | Msa0196710:intron | 35.0% |
| TTGGAGAGAAATGTTTCATC+TGG | + | chr2_1:14130151-14130170 | Msa0196710:CDS | 35.0% | |
| TTTACCTCAAAGACGTTCTT+TGG | + | chr2_1:14130183-14130202 | Msa0196710:CDS | 35.0% | |
| AGAGATTATTGAGAAGGAAG+AGG | + | chr2_1:14130378-14130397 | Msa0196710:intron | 35.0% | |
| TGTTGTGTAGAGTTTGGTTA+TGG | + | chr2_1:14130541-14130560 | Msa0196710:intron | 35.0% | |
| !!! | GAGTTTGGTTATGGTTTTGT+TGG | + | chr2_1:14130550-14130569 | Msa0196710:intron | 35.0% |
| GTCAATCTACAATCTCTGAA+TGG | - | chr2_1:14130685-14130704 | None:intergenic | 35.0% | |
| !! | ATAGTTTGGCTTTATGGTGT+AGG | + | chr2_1:14130719-14130738 | Msa0196710:intron | 35.0% |
| CTTAGGACAGTTTACAAAAC+AGG | + | chr2_1:14130761-14130780 | Msa0196710:intron | 35.0% | |
| TTTGCTTATAATAGTGACCG+CGG | - | chr2_1:14130824-14130843 | None:intergenic | 35.0% | |
| AGTAGCGTAACTTATACACA+TGG | + | chr2_1:14131009-14131028 | Msa0196710:intron | 35.0% | |
| ATTGAATACGCACATTTGAC+GGG | + | chr2_1:14131193-14131212 | Msa0196710:CDS | 35.0% | |
| ! | TCAGGGATTAGTAAGAACAA+AGG | + | chr2_1:14131342-14131361 | Msa0196710:CDS | 35.0% |
| ! | CAGGGATTAGTAAGAACAAA+GGG | + | chr2_1:14131343-14131362 | Msa0196710:CDS | 35.0% |
| ! | AGGGATTAGTAAGAACAAAG+GGG | + | chr2_1:14131344-14131363 | Msa0196710:CDS | 35.0% |
| ! | CTCTTCTCATTTTATGAGGA+TGG | + | chr2_1:14131367-14131386 | Msa0196710:CDS | 35.0% |
| ! | ACCTTTAAGAAGAGCTCTTA+AGG | + | chr2_1:14131423-14131442 | Msa0196710:CDS | 35.0% |
| ! | CCTTTAAGAAGAGCTCTTAA+GGG | + | chr2_1:14131424-14131443 | Msa0196710:CDS | 35.0% |
| ATGTGAAGGGTAATGACATA+TGG | + | chr2_1:14131587-14131606 | Msa0196710:CDS | 35.0% | |
| TGTGAATGCAATGCATTAAC+AGG | - | chr2_1:14131637-14131656 | None:intergenic | 35.0% | |
| GTTAATGCATTGCATTCACA+AGG | + | chr2_1:14131637-14131656 | Msa0196710:CDS | 35.0% | |
| ! | TATTTTCAACACCCAGAATG+TGG | + | chr2_1:14131858-14131877 | Msa0196710:CDS | 35.0% |
| TGAGAATCTAGCTAAATTGG+AGG | + | chr2_1:14131903-14131922 | Msa0196710:CDS | 35.0% | |
| ! | ATCATTTTACCTGACAGAAG+CGG | - | chr2_1:14131972-14131991 | None:intergenic | 35.0% |
| TAAATTCTTACAGGCTATGG+AGG | + | chr2_1:14132102-14132121 | Msa0196710:intron | 35.0% | |
| ! | GGAGGAATCATATGTTGATT+TGG | + | chr2_1:14132120-14132139 | Msa0196710:CDS | 35.0% |
| ATTTGGCAGAGAATTTAGCA+GGG | + | chr2_1:14132137-14132156 | Msa0196710:CDS | 35.0% | |
| GAAGGTTGGAAAATTTAGAG+CGG | + | chr2_1:14132168-14132187 | Msa0196710:CDS | 35.0% | |
| !! | TTAGGGAAGAAGAGTATTGT+GGG | - | chr2_1:14132244-14132263 | None:intergenic | 35.0% |
| !! | TTTAGGGAAGAAGAGTATTG+TGG | - | chr2_1:14132245-14132264 | None:intergenic | 35.0% |
| TTATTGCCAGTATTGTGTGA+TGG | - | chr2_1:14132377-14132396 | None:intergenic | 35.0% | |
| TGTAGAACATCTCTCTGTAT+AGG | + | chr2_1:14132475-14132494 | Msa0196710:three_prime_UTR | 35.0% | |
| !!! | GTAATAGTCATTTTGAGGTG+GGG | + | chr2_1:14132525-14132544 | Msa0196710:three_prime_UTR | 35.0% |
| ATTGCAAATTGTAGAGCTTG+TGG | - | chr2_1:14132691-14132710 | None:intergenic | 35.0% | |
| GGTGATATTTGATACGTGAT+TGG | - | chr2_1:14132738-14132757 | None:intergenic | 35.0% | |
| TCAGGTTCAAATTTCGTGAT+GGG | - | chr2_1:14132781-14132800 | None:intergenic | 35.0% | |
| ! | TTCAGGTTCAAATTTCGTGA+TGG | - | chr2_1:14132782-14132801 | None:intergenic | 35.0% |
| AATTGGATGGTGAAAACTCG+TGG | - | chr2_1:14129733-14129752 | None:intergenic | 40.0% | |
| CTTATGTGGCTTGAGGTAAT+TGG | - | chr2_1:14129750-14129769 | None:intergenic | 40.0% | |
| ACATTTCCGTAATCACGTCT+AGG | + | chr2_1:14129778-14129797 | Msa0196710:five_prime_UTR | 40.0% | |
| AACTCCTTCTTCTCTCGTAT+CGG | + | chr2_1:14129976-14129995 | Msa0196710:CDS | 40.0% | |
| TTCACCAAAGAACGTCTTTG+AGG | - | chr2_1:14130190-14130209 | None:intergenic | 40.0% | |
| TCAAAGACGTTCTTTGGTGA+AGG | + | chr2_1:14130189-14130208 | Msa0196710:CDS | 40.0% | |
| CTATTAACGCTGAATCGCAA+AGG | + | chr2_1:14130212-14130231 | Msa0196710:CDS | 40.0% | |
| GATTATTGAGAAGGAAGAGG+AGG | + | chr2_1:14130381-14130400 | Msa0196710:CDS | 40.0% | |
| !! | CAAGAGGTGAAGCATTTTCA+AGG | - | chr2_1:14130429-14130448 | None:intergenic | 40.0% |
| TGCTTCACCTCTTGAGATAA+TGG | + | chr2_1:14130435-14130454 | Msa0196710:CDS | 40.0% | |
| !! | ACCTCTTGAGATAATGGACA+AGG | + | chr2_1:14130441-14130460 | Msa0196710:CDS | 40.0% |
| GACAAGGCTCTTGAGAAATT+TGG | + | chr2_1:14130457-14130476 | Msa0196710:CDS | 40.0% | |
| TTGATCATGTGAGTGGTTTC+AGG | + | chr2_1:14130579-14130598 | Msa0196710:intron | 40.0% | |
| TTGCTTATAATAGTGACCGC+GGG | - | chr2_1:14130823-14130842 | None:intergenic | 40.0% | |
| !! | ATCAAGAGTGCTGCAGAATA+AGG | + | chr2_1:14131392-14131411 | Msa0196710:CDS | 40.0% |
| CCCTTAAGAGCTCTTCTTAA+AGG | - | chr2_1:14131427-14131446 | None:intergenic | 40.0% | |
| AACAGGATCAACCTGAACAA+CGG | - | chr2_1:14131512-14131531 | None:intergenic | 40.0% | |
| !!! | TCAGGTTGATCCTGTTTTTG+AGG | + | chr2_1:14131516-14131535 | Msa0196710:CDS | 40.0% |
| !!! | CAGGTTGATCCTGTTTTTGA+GGG | + | chr2_1:14131517-14131536 | Msa0196710:CDS | 40.0% |
| !!! | TGATCCTGTTTTTGAGGGAT+TGG | + | chr2_1:14131522-14131541 | Msa0196710:CDS | 40.0% |
| !! | TTTTTGAGGGATTGGATGGT+GGG | + | chr2_1:14131530-14131549 | Msa0196710:CDS | 40.0% |
| TTACCCTTCACATTTGCAAC+CGG | - | chr2_1:14131580-14131599 | None:intergenic | 40.0% | |
| ATGACATATGGACCTTCCTT+AGG | + | chr2_1:14131599-14131618 | Msa0196710:CDS | 40.0% | |
| TCACAAGGATACGTTTCCAT+TGG | + | chr2_1:14131652-14131671 | Msa0196710:CDS | 40.0% | |
| TCCGTTTCCATTACCATTCT+GGG | - | chr2_1:14131803-14131822 | None:intergenic | 40.0% | |
| TGTTACCATTCTCCTACTGA+AGG | + | chr2_1:14132031-14132050 | Msa0196710:intron | 40.0% | |
| GATTTGGCAGAGAATTTAGC+AGG | + | chr2_1:14132136-14132155 | Msa0196710:CDS | 40.0% | |
| ! | GTTGGAAAATTTAGAGCGGA+TGG | + | chr2_1:14132172-14132191 | Msa0196710:CDS | 40.0% |
| AGAATATGCGAAGAGTGAAC+TGG | + | chr2_1:14132204-14132223 | Msa0196710:CDS | 40.0% | |
| GAATATGCGAAGAGTGAACT+GGG | + | chr2_1:14132205-14132224 | Msa0196710:CDS | 40.0% | |
| AATATGCGAAGAGTGAACTG+GGG | + | chr2_1:14132206-14132225 | Msa0196710:CDS | 40.0% | |
| !! | TAGGGAAGAAGAGTATTGTG+GGG | - | chr2_1:14132243-14132262 | None:intergenic | 40.0% |
| TCTTCCCTAAACACTCTTCT+CGG | + | chr2_1:14132254-14132273 | Msa0196710:CDS | 40.0% | |
| ! | TCAACGTCTCTCTTTTCTGA+AGG | - | chr2_1:14132292-14132311 | None:intergenic | 40.0% |
| !! | GAGAGACGTTGATTCATTAC+TGG | + | chr2_1:14132300-14132319 | Msa0196710:CDS | 40.0% |
| AAGGTTCCATCACACAATAC+TGG | + | chr2_1:14132368-14132387 | Msa0196710:three_prime_UTR | 40.0% | |
| ! | GAATGTGGGAATGACAGTTT+TGG | + | chr2_1:14132429-14132448 | Msa0196710:three_prime_UTR | 40.0% |
| ACGTTTGTGTTCTGTGTTTC+AGG | - | chr2_1:14132799-14132818 | None:intergenic | 40.0% | |
| AAACACAGAACACAAACGTG+CGG | + | chr2_1:14132800-14132819 | Msa0196710:three_prime_UTR | 40.0% | |
| TGTGGCTTGAGGTAATTGGA+TGG | - | chr2_1:14129746-14129765 | None:intergenic | 45.0% | |
| TGTGATGCTTATGTGGCTTG+AGG | - | chr2_1:14129757-14129776 | None:intergenic | 45.0% | |
| ATAAAGAGAAGGGTGATGCG+AGG | - | chr2_1:14129823-14129842 | None:intergenic | 45.0% | |
| AGATCCGATACGAGAGAAGA+AGG | - | chr2_1:14129983-14130002 | None:intergenic | 45.0% | |
| GGATCTTCGTCTGAATCCAA+AGG | + | chr2_1:14129997-14130016 | Msa0196710:CDS | 45.0% | |
| GCCTTGTCCATTATCTCAAG+AGG | - | chr2_1:14130445-14130464 | None:intergenic | 45.0% | |
| ! | GGTTTGCTTGATCATGTGAG+TGG | + | chr2_1:14130572-14130591 | Msa0196710:intron | 45.0% |
| ! | AATACGCACATTTGACGGGT+AGG | + | chr2_1:14131197-14131216 | Msa0196710:CDS | 45.0% |
| CGGGGAACATGTATTCAATG+CGG | - | chr2_1:14131309-14131328 | None:intergenic | 45.0% | |
| TGAATACATGTTCCCCGATG+CGG | + | chr2_1:14131312-14131331 | Msa0196710:CDS | 45.0% | |
| ! | GGGGCTCTTCTCATTTTATG+AGG | + | chr2_1:14131363-14131382 | Msa0196710:CDS | 45.0% |
| !! | AGAGTGCTGCAGAATAAGGA+AGG | + | chr2_1:14131396-14131415 | Msa0196710:CDS | 45.0% |
| CTCTTAAGGGTTTGAGAGCA+TGG | + | chr2_1:14131437-14131456 | Msa0196710:CDS | 45.0% | |
| ! | GGTTTGAGAGCATGGATAAC+TGG | + | chr2_1:14131445-14131464 | Msa0196710:CDS | 45.0% |
| ACAGGATCAACCTGAACAAC+GGG | - | chr2_1:14131511-14131530 | None:intergenic | 45.0% | |
| CCATCCAATCCCTCAAAAAC+AGG | - | chr2_1:14131529-14131548 | None:intergenic | 45.0% | |
| !!! | CCTGTTTTTGAGGGATTGGA+TGG | + | chr2_1:14131526-14131545 | Msa0196710:CDS | 45.0% |
| !! | GTTTTTGAGGGATTGGATGG+TGG | + | chr2_1:14131529-14131548 | Msa0196710:CDS | 45.0% |
| !! | GGAATGGTAGCCTTGTTAAG+TGG | + | chr2_1:14131551-14131570 | Msa0196710:CDS | 45.0% |
| !! | TAGCCTTGTTAAGTGGAACC+CGG | + | chr2_1:14131558-14131577 | Msa0196710:CDS | 45.0% |
| AACCCGGTTGCAAATGTGAA+GGG | + | chr2_1:14131574-14131593 | Msa0196710:CDS | 45.0% | |
| TACCCTTCACATTTGCAACC+GGG | - | chr2_1:14131579-14131598 | None:intergenic | 45.0% | |
| ATGGACCTTCCTTAGGACAA+TGG | + | chr2_1:14131606-14131625 | Msa0196710:CDS | 45.0% | |
| CACATCCATTGTCCTAAGGA+AGG | - | chr2_1:14131614-14131633 | None:intergenic | 45.0% | |
| TGTGCATGGTTCACAACCAA+TGG | - | chr2_1:14131671-14131690 | None:intergenic | 45.0% | |
| TTGGTTGTGAACCATGCACA+AGG | + | chr2_1:14131671-14131690 | Msa0196710:CDS | 45.0% | |
| AGCATGAAAGAGAGGGAAGA+TGG | + | chr2_1:14131710-14131729 | Msa0196710:CDS | 45.0% | |
| ATGAAAGAGAGGGAAGATGG+TGG | + | chr2_1:14131713-14131732 | Msa0196710:CDS | 45.0% | |
| AAGACCACACTCCTTTGCTT+TGG | - | chr2_1:14131749-14131768 | None:intergenic | 45.0% | |
| ! | AAGGAGTGTGGTCTTCACAA+AGG | + | chr2_1:14131754-14131773 | Msa0196710:CDS | 45.0% |
| !! | GCCCAGAATGGTAATGGAAA+CGG | + | chr2_1:14131799-14131818 | Msa0196710:CDS | 45.0% |
| CTCCGTTTCCATTACCATTC+TGG | - | chr2_1:14131804-14131823 | None:intergenic | 45.0% | |
| AGTTGCAGAGCCATTTGCAT+GGG | - | chr2_1:14131830-14131849 | None:intergenic | 45.0% | |
| ATGCACCTTCAGTAGGAGAA+TGG | - | chr2_1:14132039-14132058 | None:intergenic | 45.0% | |
| TTTGGCACTTCACTCGAATG+TGG | + | chr2_1:14132414-14132433 | Msa0196710:three_prime_UTR | 45.0% | |
| TTGGCACTTCACTCGAATGT+GGG | + | chr2_1:14132415-14132434 | Msa0196710:three_prime_UTR | 45.0% | |
| GTGATGCGTAACGAGTTTAG+TGG | - | chr2_1:14132716-14132735 | None:intergenic | 45.0% | |
| GTGATCGTTTGTGACGTGAT+AGG | - | chr2_1:14132759-14132778 | None:intergenic | 45.0% | |
| GGGTGATGCGAGGAATTTGA+AGG | - | chr2_1:14129813-14129832 | None:intergenic | 50.0% | |
| GCAACGATAGTTGCTGCAAG+AGG | - | chr2_1:14130253-14130272 | None:intergenic | 50.0% | |
| ATAACGTGCAAATGCTCCCG+CGG | + | chr2_1:14130804-14130823 | Msa0196710:intron | 50.0% | |
| ! | ATTTGACGGGTAGGCCATTC+AGG | + | chr2_1:14131206-14131225 | Msa0196710:CDS | 50.0% |
| ! | TTTGACGGGTAGGCCATTCA+GGG | + | chr2_1:14131207-14131226 | Msa0196710:CDS | 50.0% |
| TCCAGACTGAACACCCTGAA+TGG | - | chr2_1:14131223-14131242 | None:intergenic | 50.0% | |
| !! | GATGCAGTTGAGAAGCGCTA+TGG | + | chr2_1:14131280-14131299 | Msa0196710:CDS | 50.0% |
| CAGAGAAAAGATCAGTCGCC+TGG | + | chr2_1:14131469-14131488 | Msa0196710:CDS | 50.0% | |
| AAGATCAGTCGCCTGGTACT+AGG | + | chr2_1:14131476-14131495 | Msa0196710:CDS | 50.0% | |
| GGTACTTCAGACCTAGTACC+AGG | - | chr2_1:14131490-14131509 | None:intergenic | 50.0% | |
| ! | GTCTGAAGTACCCGTTGTTC+AGG | + | chr2_1:14131498-14131517 | Msa0196710:CDS | 50.0% |
| CAACCGGGTTCCACTTAACA+AGG | - | chr2_1:14131564-14131583 | None:intergenic | 50.0% | |
| GAACCCGGTTGCAAATGTGA+AGG | + | chr2_1:14131573-14131592 | Msa0196710:CDS | 50.0% | |
| CAGGCACATCCATTGTCCTA+AGG | - | chr2_1:14131618-14131637 | None:intergenic | 50.0% | |
| TCATGCTGACCAGGCAAAAC+TGG | - | chr2_1:14131697-14131716 | None:intergenic | 50.0% | |
| CCTGGTCAGCATGAAAGAGA+GGG | + | chr2_1:14131703-14131722 | Msa0196710:CDS | 50.0% | |
| ! | AAAGAGAGGGAAGATGGTGG+TGG | + | chr2_1:14131716-14131735 | Msa0196710:CDS | 50.0% |
| ! | AAGAGAGGGAAGATGGTGGT+GGG | + | chr2_1:14131717-14131736 | Msa0196710:CDS | 50.0% |
| GATGCCAAAGCAAAGGAGTG+TGG | + | chr2_1:14131742-14131761 | Msa0196710:CDS | 50.0% | |
| GATGCTGCCCAGAATGGTAA+TGG | + | chr2_1:14131793-14131812 | Msa0196710:CDS | 50.0% | |
| CAGTTGCAGAGCCATTTGCA+TGG | - | chr2_1:14131831-14131850 | None:intergenic | 50.0% | |
| GCTCAAGCTGACCACATTCT+GGG | - | chr2_1:14131872-14131891 | None:intergenic | 50.0% | |
| TGCTCAAGCTGACCACATTC+TGG | - | chr2_1:14131873-14131892 | None:intergenic | 50.0% | |
| AGAATGTGGTCAGCTTGAGC+AGG | + | chr2_1:14131872-14131891 | Msa0196710:CDS | 50.0% | |
| GAATGTGGTCAGCTTGAGCA+GGG | + | chr2_1:14131873-14131892 | Msa0196710:CDS | 50.0% | |
| ! | CAACGATCCAGGGCTCTTTT+CGG | - | chr2_1:14131930-14131949 | None:intergenic | 50.0% |
| GCATAGAGCACAACGATCCA+GGG | - | chr2_1:14131940-14131959 | None:intergenic | 50.0% | |
| TGCATAGAGCACAACGATCC+AGG | - | chr2_1:14131941-14131960 | None:intergenic | 50.0% | |
| TCGTTGTGCTCTATGCACCA+TGG | + | chr2_1:14131944-14131963 | Msa0196710:CDS | 50.0% | |
| GCAGAGAATTTAGCAGGGTC+AGG | + | chr2_1:14132142-14132161 | Msa0196710:CDS | 50.0% | |
| TTTAGCAGGGTCAGGAGTGA+AGG | + | chr2_1:14132150-14132169 | Msa0196710:CDS | 50.0% | |
| !! | TCGGCCGAGAAGAGTGTTTA+GGG | - | chr2_1:14132261-14132280 | None:intergenic | 50.0% |
| !! | ATCGGCCGAGAAGAGTGTTT+AGG | - | chr2_1:14132262-14132281 | None:intergenic | 50.0% |
| ! | GTGGCGCGTGGTGTTTGTTT+TGG | - | chr2_1:14129714-14129733 | None:intergenic | 55.0% |
| GAAGTAACGGCGAGAGCCAT+TGG | - | chr2_1:14129928-14129947 | None:intergenic | 55.0% | |
| GCAGCAACTATCGTTGCACC+TGG | + | chr2_1:14130256-14130275 | Msa0196710:CDS | 55.0% | |
| ! | GCCATTCAGGGTGTTCAGTC+TGG | + | chr2_1:14131219-14131238 | Msa0196710:CDS | 55.0% |
| ! | AGGGTGTTCAGTCTGGACAC+TGG | + | chr2_1:14131226-14131245 | Msa0196710:CDS | 55.0% |
| GGGTGTTCAGTCTGGACACT+GGG | + | chr2_1:14131227-14131246 | Msa0196710:CDS | 55.0% | |
| TCCCTGAACCTCAACCGCAT+CGG | - | chr2_1:14131329-14131348 | None:intergenic | 55.0% | |
| !! | GAGGGATTGGATGGTGGGAA+TGG | + | chr2_1:14131535-14131554 | Msa0196710:CDS | 55.0% |
| !! | GGCAAAACTGGCCTTGTGCA+TGG | - | chr2_1:14131685-14131704 | None:intergenic | 55.0% |
| ! | TGCACAAGGCCAGTTTTGCC+TGG | + | chr2_1:14131685-14131704 | Msa0196710:CDS | 55.0% |
| GCCTGGTCAGCATGAAAGAG+AGG | + | chr2_1:14131702-14131721 | Msa0196710:CDS | 55.0% | |
| CCCTCTCTTTCATGCTGACC+AGG | - | chr2_1:14131706-14131725 | None:intergenic | 55.0% | |
| GTGGGAGGATGCCAAAGCAA+AGG | + | chr2_1:14131735-14131754 | Msa0196710:CDS | 55.0% | |
| CAGGATGATGCTGCCCAGAA+TGG | + | chr2_1:14131787-14131806 | Msa0196710:CDS | 55.0% | |
| AACGGAGTCGCCCATGCAAA+TGG | + | chr2_1:14131817-14131836 | Msa0196710:CDS | 55.0% | |
| TGCGAAGAGTGAACTGGGGT+TGG | + | chr2_1:14132210-14132229 | Msa0196710:CDS | 55.0% | |
| GCGAAGAGTGAACTGGGGTT+GGG | + | chr2_1:14132211-14132230 | Msa0196710:CDS | 55.0% | |
| TGGTGAAAACTCGTGGCGCG+TGG | - | chr2_1:14129726-14129745 | None:intergenic | 60.0% | |
| CATGTTCCCCGATGCGGTTG+AGG | + | chr2_1:14131318-14131337 | Msa0196710:CDS | 60.0% | |
| CCTGAACCTCAACCGCATCG+GGG | - | chr2_1:14131327-14131346 | None:intergenic | 60.0% | |
| CCCTGAACCTCAACCGCATC+GGG | - | chr2_1:14131328-14131347 | None:intergenic | 60.0% | |
| CCCGATGCGGTTGAGGTTCA+GGG | + | chr2_1:14131325-14131344 | Msa0196710:CDS | 60.0% | |
| !! | AGAGGGAAGATGGTGGTGGG+AGG | + | chr2_1:14131720-14131739 | Msa0196710:CDS | 60.0% |
| TGGAGGACCGAAAAGAGCCC+TGG | + | chr2_1:14131920-14131939 | Msa0196710:CDS | 60.0% | |
| !! | ACCATGGTGCCGCTTCTGTC+AGG | + | chr2_1:14131960-14131979 | Msa0196710:CDS | 60.0% |
| ACCTGACAGAAGCGGCACCA+TGG | - | chr2_1:14131964-14131983 | None:intergenic | 60.0% | |
| GCAGGGTCAGGAGTGAAGGT+TGG | + | chr2_1:14132154-14132173 | Msa0196710:CDS | 60.0% | |
| CCCCGATGCGGTTGAGGTTC+AGG | + | chr2_1:14131324-14131343 | Msa0196710:CDS | 65.0% | |
| GTGGTCAGCTTGAGCAGGGC+TGG | + | chr2_1:14131877-14131896 | Msa0196710:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_1 | gene | 14129704 | 14132845 | 14129704 | ID=Msa0196710;Name=Msa0196710 |
| chr2_1 | mRNA | 14129704 | 14132845 | 14129704 | ID=Msa0196710-mRNA-1;Parent=Msa0196710;Name=Msa0196710-mRNA-1;_AED=0.03;_eAED=0.03;_QI=101|1|1|1|1|1|5|500|510 |
| chr2_1 | exon | 14129704 | 14130018 | 14129704 | ID=Msa0196710-mRNA-1:exon:6054;Parent=Msa0196710-mRNA-1 |
| chr2_1 | exon | 14130125 | 14130277 | 14130125 | ID=Msa0196710-mRNA-1:exon:6055;Parent=Msa0196710-mRNA-1 |
| chr2_1 | exon | 14130380 | 14130503 | 14130380 | ID=Msa0196710-mRNA-1:exon:6056;Parent=Msa0196710-mRNA-1 |
| chr2_1 | exon | 14131171 | 14131981 | 14131171 | ID=Msa0196710-mRNA-1:exon:6057;Parent=Msa0196710-mRNA-1 |
| chr2_1 | exon | 14132115 | 14132845 | 14132115 | ID=Msa0196710-mRNA-1:exon:6058;Parent=Msa0196710-mRNA-1 |
| chr2_1 | five_prime_UTR | 14129704 | 14129804 | 14129704 | ID=Msa0196710-mRNA-1:five_prime_utr;Parent=Msa0196710-mRNA-1 |
| chr2_1 | CDS | 14129805 | 14130018 | 14129805 | ID=Msa0196710-mRNA-1:cds;Parent=Msa0196710-mRNA-1 |
| chr2_1 | CDS | 14130125 | 14130277 | 14130125 | ID=Msa0196710-mRNA-1:cds;Parent=Msa0196710-mRNA-1 |
| chr2_1 | CDS | 14130380 | 14130503 | 14130380 | ID=Msa0196710-mRNA-1:cds;Parent=Msa0196710-mRNA-1 |
| chr2_1 | CDS | 14131171 | 14131981 | 14131171 | ID=Msa0196710-mRNA-1:cds;Parent=Msa0196710-mRNA-1 |
| chr2_1 | CDS | 14132115 | 14132345 | 14132115 | ID=Msa0196710-mRNA-1:cds;Parent=Msa0196710-mRNA-1 |
| chr2_1 | three_prime_UTR | 14132346 | 14132845 | 14132346 | ID=Msa0196710-mRNA-1:three_prime_utr;Parent=Msa0196710-mRNA-1 |
| Gene Sequence |
| Protein sequence |
