Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0276150 | XP_013462840.1 | 97.015 | 469 | 14 | 0 | 42 | 510 | 1 | 469 | 0.0 | 948 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0276150 | sp|P92980|APR3_ARATH | 78.876 | 445 | 77 | 4 | 71 | 510 | 26 | 458 | 0.0 | 725 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0276150 | A0A072V4H5 | 97.015 | 469 | 14 | 0 | 42 | 510 | 1 | 469 | 0.0 | 948 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0196700 | Msa0276150 | 0.955525 | 2.482617e-113 | -8.615850e-47 |
| Msa0196710 | Msa0276150 | 0.985245 | 5.680538e-163 | -8.615850e-47 |
| Msa0238580 | Msa0276150 | 0.990165 | 2.342530e-181 | -8.615850e-47 |
| Msa0276150 | Msa0338780 | 0.861460 | 1.010377e-63 | -8.615850e-47 |
| Msa0276150 | Msa0786970 | 0.835439 | 1.677449e-56 | -8.615850e-47 |
| Msa0276150 | Msa0822380 | 0.843267 | 1.556237e-58 | -8.615850e-47 |
| Msa0276150 | Msa1084630 | 0.840526 | 8.246384e-58 | -8.615850e-47 |
| Msa0276150 | Msa1204260 | 0.805070 | 1.594031e-49 | -8.615850e-47 |
| Msa0276150 | Msa1385580 | 0.800857 | 1.183671e-48 | -8.615850e-47 |
| Msa0276150 | Msa1400330 | 0.839367 | 1.652908e-57 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0276150 | MtrunA17_Chr2g0288581 | 97.015 | 469 | 14 | 0 | 42 | 510 | 1 | 469 | 0.0 | 948 |
| Msa0276150 | MtrunA17_Chr1g0189051 | 78.667 | 75 | 16 | 0 | 435 | 509 | 2 | 76 | 4.23e-31 | 115 |
| Msa0276150 | MtrunA17_Chr3g0079881 | 80.000 | 70 | 14 | 0 | 441 | 510 | 13 | 82 | 1.09e-29 | 111 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0276150 | AT4G21990.1 | 78.876 | 445 | 77 | 4 | 71 | 510 | 26 | 458 | 0.0 | 725 |
| Msa0276150 | AT4G04610.1 | 76.703 | 455 | 91 | 5 | 63 | 510 | 19 | 465 | 0.0 | 703 |
| Msa0276150 | AT1G62180.2 | 73.191 | 470 | 102 | 5 | 42 | 510 | 1 | 447 | 0.0 | 691 |
| Msa0276150 | AT1G62180.1 | 73.305 | 472 | 105 | 5 | 42 | 510 | 1 | 454 | 0.0 | 684 |
| Msa0276150 | AT4G21990.2 | 81.818 | 286 | 40 | 3 | 71 | 351 | 61 | 339 | 4.66e-168 | 478 |
Find 165 sgRNAs with CRISPR-Local
Find 232 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGGCATTTATTAATGCTTTA+AGG | 0.124902 | 2_3:+8371639 | Msa0276150:CDS |
| AGTTGTTTATTCACTGATTT+TGG | 0.132856 | 2_3:+8371715 | Msa0276150:three_prime_UTR |
| AATTGGTTCGTTAAGAATTT+TGG | 0.144905 | 2_3:+8369431 | Msa0276150:CDS |
| TCAAACAATCTGTATGTTTC+TGG | 0.150664 | 2_3:-8370560 | None:intergenic |
| CTCCGTTTCCATTACCATTC+TGG | 0.158439 | 2_3:-8371102 | None:intergenic |
| ATGATATTGCTATTGCTTTC+AGG | 0.175353 | 2_3:+8369781 | Msa0276150:CDS |
| CCCTTAAGAGCTCTTCTTAA+AGG | 0.194775 | 2_3:-8370725 | None:intergenic |
| TGCTCAAGCTGACCACATTC+TGG | 0.202249 | 2_3:-8371171 | None:intergenic |
| CCCCGATGCGGTTGAGGTTC+AGG | 0.235666 | 2_3:+8370625 | Msa0276150:CDS |
| ACGTTTGTGTTCTGTGTTTC+AGG | 0.240697 | 2_3:-8372125 | None:intergenic |
| GACAAGGCTCTTGAGAAATT+TGG | 0.259730 | 2_3:+8369756 | Msa0276150:CDS |
| AATTGAGAATCTAGCTAAAT+TGG | 0.278779 | 2_3:+8371201 | Msa0276150:CDS |
| TTTACCTCAAAGACGTTCTT+TGG | 0.283907 | 2_3:+8369482 | Msa0276150:CDS |
| CTTATGTGGCTTGAGGTAAT+TGG | 0.288137 | 2_3:-8369046 | None:intergenic |
| ATTTGACGGGTAGGCCATTC+AGG | 0.289307 | 2_3:+8370507 | Msa0276150:CDS |
| TCATGCTGACCAGGCAAAAC+TGG | 0.308335 | 2_3:-8370995 | None:intergenic |
| ATCAAGAGTGCTGCAGAATA+AGG | 0.321572 | 2_3:+8370693 | Msa0276150:CDS |
| TGCTTCACCTCTTGAAATAA+TGG | 0.322572 | 2_3:+8369734 | Msa0276150:CDS |
| GTCTGAAGTACCCGTTGTTC+AGG | 0.324589 | 2_3:+8370799 | Msa0276150:CDS |
| ACCTTTAAGAAGAGCTCTTA+AGG | 0.331966 | 2_3:+8370724 | Msa0276150:CDS |
| GGAGGAATCATATGTTGATT+TGG | 0.337432 | 2_3:+8371439 | Msa0276150:CDS |
| GATATTCGTACATGAAAGTT+TGG | 0.350129 | 2_3:-8371950 | None:intergenic |
| ATCGGCCGAGAAGAGTGTTT+AGG | 0.350482 | 2_3:-8371578 | None:intergenic |
| GAGAGACGTTGATTCATTAC+TGG | 0.351200 | 2_3:+8371619 | Msa0276150:CDS |
| TCGGCCGAGAAGAGTGTTTA+GGG | 0.355914 | 2_3:-8371577 | None:intergenic |
| CCCTGAACCTCAACCGCATC+GGG | 0.366041 | 2_3:-8370626 | None:intergenic |
| CCCGATGCGGTTGAGGTTCA+GGG | 0.369744 | 2_3:+8370626 | Msa0276150:CDS |
| TGTAGAACATCTCTCTGTAT+AGG | 0.374816 | 2_3:+8371794 | Msa0276150:three_prime_UTR |
| GGTTTGAGAGCATGGATAAC+TGG | 0.378025 | 2_3:+8370746 | Msa0276150:CDS |
| TCTTCCCTAAACACTCTTCT+CGG | 0.378246 | 2_3:+8371573 | Msa0276150:CDS |
| GCCATTCAGGGTGTTCAGTC+TGG | 0.379663 | 2_3:+8370520 | Msa0276150:CDS |
| GTGGCGCGTGGTGCTTGTTT+TGG | 0.379706 | 2_3:-8369010 | None:intergenic |
| CCCTCTCTTTCATGCTGACC+AGG | 0.381378 | 2_3:-8371004 | None:intergenic |
| TGCATAGAGCACAACGATCC+AGG | 0.397198 | 2_3:-8371239 | None:intergenic |
| TCCGTTTCCATTACCATTCT+GGG | 0.399151 | 2_3:-8371101 | None:intergenic |
| TGTGAATGCAATGCATTAAC+AGG | 0.400904 | 2_3:-8370935 | None:intergenic |
| TTACAAATTAATAGAGTTTG+TGG | 0.404763 | 2_3:+8372155 | Msa0276150:three_prime_UTR |
| GCAGAGAATTTAGCAGGGTC+AGG | 0.405699 | 2_3:+8371461 | Msa0276150:CDS |
| GAAGTAACGGCGAGAGCCAT+TGG | 0.407635 | 2_3:-8369224 | None:intergenic |
| GAATGTGGGAATGACAGTTT+TGG | 0.409739 | 2_3:+8371748 | Msa0276150:three_prime_UTR |
| TTGGAGAGAAATGTTTCATC+TGG | 0.411070 | 2_3:+8369450 | Msa0276150:CDS |
| AAGACCACACTCCTTTGCTT+TGG | 0.412645 | 2_3:-8371047 | None:intergenic |
| GCTCAAGCTGACCACATTCT+GGG | 0.413593 | 2_3:-8371170 | None:intergenic |
| TTACCCTTCACATTTGCAAC+CGG | 0.414227 | 2_3:-8370878 | None:intergenic |
| CCTTTAAGAAGAGCTCTTAA+GGG | 0.416945 | 2_3:+8370725 | Msa0276150:CDS |
| TTCACAAAGGTAATTTGAAA+CGG | 0.417855 | 2_3:+8371068 | Msa0276150:CDS |
| AATTGAATACGCACATTTGA+CGG | 0.418233 | 2_3:+8370493 | Msa0276150:CDS |
| GTGGTCAGCTTGAGCAGGGC+TGG | 0.421089 | 2_3:+8371178 | Msa0276150:CDS |
| AGAATATGCGAAGAGTGAAC+TGG | 0.421115 | 2_3:+8371523 | Msa0276150:CDS |
| ATTGAACCTAGACGTGATTA+CGG | 0.426023 | 2_3:-8369083 | None:intergenic |
| CTCTTAAGGGTTTGAGAGCA+TGG | 0.434805 | 2_3:+8370738 | Msa0276150:CDS |
| TTCACCAAAGAACGTCTTTG+AGG | 0.443814 | 2_3:-8369486 | None:intergenic |
| AAGATCAGTCGCCTGGTACT+AGG | 0.444407 | 2_3:+8370777 | Msa0276150:CDS |
| TCACAAAGGTAATTTGAAAC+GGG | 0.448862 | 2_3:+8371069 | Msa0276150:CDS |
| ACAGGATCAACCTGAACAAC+GGG | 0.450053 | 2_3:-8370809 | None:intergenic |
| TGCGAAGAGTGAACTGGGGT+TGG | 0.451563 | 2_3:+8371529 | Msa0276150:CDS |
| GATTTGGCAGAGAATTTAGC+AGG | 0.459112 | 2_3:+8371455 | Msa0276150:CDS |
| AACGGAGTCGCCCATGCAAA+TGG | 0.462572 | 2_3:+8371118 | Msa0276150:CDS |
| AAAGAGAGGGAAGATGGTGG+TGG | 0.469201 | 2_3:+8371017 | Msa0276150:CDS |
| GCGAAGAGTGAACTGGGGTT+GGG | 0.470355 | 2_3:+8371530 | Msa0276150:CDS |
| ATGTGAAGGGTAATGACATA+TGG | 0.471063 | 2_3:+8370888 | Msa0276150:CDS |
| ACCATGGTGCCGCTTCTGTC+AGG | 0.471836 | 2_3:+8371261 | Msa0276150:CDS |
| AGAATGTGGTCAGCTTGAGC+AGG | 0.476294 | 2_3:+8371173 | Msa0276150:CDS |
| AGAGATTATTGAGAAGGAAG+AGG | 0.479071 | 2_3:+8369677 | Msa0276150:intron |
| GAGGGATTGGATGGTGGGAA+TGG | 0.483411 | 2_3:+8370836 | Msa0276150:CDS |
| TTTCTAGATGAGTAGAGGTA+TGG | 0.485095 | 2_3:+8371881 | Msa0276150:three_prime_UTR |
| TTTAGGGAAGAAGAGTATTG+TGG | 0.485147 | 2_3:-8371561 | None:intergenic |
| TTTAGCAGGGTCAGGAGTGA+AGG | 0.486632 | 2_3:+8371469 | Msa0276150:CDS |
| ATGACATATGGACCTTCCTT+AGG | 0.487981 | 2_3:+8370900 | Msa0276150:CDS |
| TTAGGGAAGAAGAGTATTGT+GGG | 0.489577 | 2_3:-8371560 | None:intergenic |
| CAGGGATTAGTAAGAACAAA+GGG | 0.496123 | 2_3:+8370644 | Msa0276150:CDS |
| TCCAGACTGAACACCCTGAA+TGG | 0.499274 | 2_3:-8370521 | None:intergenic |
| CATGTTCCCCGATGCGGTTG+AGG | 0.501238 | 2_3:+8370619 | Msa0276150:CDS |
| TTCAGGTTCAAATTTCGTGA+TGG | 0.503048 | 2_3:-8372108 | None:intergenic |
| TCAGGTTCAAATTTCGTGAT+GGG | 0.503390 | 2_3:-8372107 | None:intergenic |
| TTACTTCATTCATTCTCCAA+TGG | 0.503658 | 2_3:+8369208 | Msa0276150:CDS |
| GTTGGAAAATTTAGAGCGGA+TGG | 0.504381 | 2_3:+8371491 | Msa0276150:CDS |
| AAATGTTTGTGATGCTTATG+TGG | 0.504614 | 2_3:-8369060 | None:intergenic |
| AAGAGAGGGAAGATGGTGGT+GGG | 0.506965 | 2_3:+8371018 | Msa0276150:CDS |
| ATTTGCAGAGATTATTGAGA+AGG | 0.507607 | 2_3:+8369671 | Msa0276150:intron |
| CAACCGGGTTCCACTTAACA+AGG | 0.507691 | 2_3:-8370862 | None:intergenic |
| TCACAAGGATACGTTTCCAT+TGG | 0.510148 | 2_3:+8370953 | Msa0276150:CDS |
| TGGAGGACCGAAAAGAGCCC+TGG | 0.510799 | 2_3:+8371221 | Msa0276150:CDS |
| AATTCCTTCTTCTCTCGTAT+CGG | 0.517956 | 2_3:+8369275 | Msa0276150:CDS |
| TTTGACGGGTAGGCCATTCA+GGG | 0.520433 | 2_3:+8370508 | Msa0276150:CDS |
| AGAGGGAAGATGGTGGTGGG+AGG | 0.521000 | 2_3:+8371021 | Msa0276150:CDS |
| TCCCTGAACCTCAACCGCAT+CGG | 0.522772 | 2_3:-8370627 | None:intergenic |
| AGCATGAAAGAGAGGGAAGA+TGG | 0.523785 | 2_3:+8371011 | Msa0276150:CDS |
| GGTGATATTTGATACGTGAT+TGG | 0.524738 | 2_3:-8372057 | None:intergenic |
| ATGAAATGAATGAAAAGAAG+AGG | 0.524879 | 2_3:-8369149 | None:intergenic |
| GCCTTGTCCATTATTTCAAG+AGG | 0.527964 | 2_3:-8369741 | None:intergenic |
| GCCCAGAATGGTAATGGAAA+CGG | 0.529855 | 2_3:+8371100 | Msa0276150:CDS |
| GGGTGATGCGAGGAATTTGA+AGG | 0.532368 | 2_3:-8369109 | None:intergenic |
| ATTGAATACGCACATTTGAC+GGG | 0.532538 | 2_3:+8370494 | Msa0276150:CDS |
| TACCCTTCACATTTGCAACC+GGG | 0.532628 | 2_3:-8370877 | None:intergenic |
| GGGTGTTCAGTCTGGACACT+GGG | 0.534085 | 2_3:+8370528 | Msa0276150:CDS |
| GCAGGGTCAGGAGTGAAGGT+TGG | 0.536117 | 2_3:+8371473 | Msa0276150:CDS |
| GATGCTGCCCAGAATGGTAA+TGG | 0.542560 | 2_3:+8371094 | Msa0276150:CDS |
| TTTGGCACTTCACTCGAATG+TGG | 0.545376 | 2_3:+8371733 | Msa0276150:three_prime_UTR |
| AAGGTTCCATCACACAATAC+TGG | 0.546306 | 2_3:+8371687 | Msa0276150:three_prime_UTR |
| AGATCCGATACGAGAGAAGA+AGG | 0.548526 | 2_3:-8369279 | None:intergenic |
| TGAGAATCTAGCTAAATTGG+AGG | 0.548731 | 2_3:+8371204 | Msa0276150:CDS |
| TCAAAGACGTTCTTTGGTGA+AGG | 0.549369 | 2_3:+8369488 | Msa0276150:CDS |
| GGCAAAACTGGCCTTGTGCA+TGG | 0.554255 | 2_3:-8370983 | None:intergenic |
| CGGGATGATGCTGCCCAGAA+TGG | 0.556065 | 2_3:+8371088 | Msa0276150:CDS |
| GATGCAGTTGAGAAGCGCTA+TGG | 0.556616 | 2_3:+8370581 | Msa0276150:CDS |
| TAAATTCTTACAGGCTATGG+AGG | 0.556676 | 2_3:+8371421 | Msa0276150:intron |
| TCAATTGAGTAATTTGCTCA+AGG | 0.556802 | 2_3:+8371668 | Msa0276150:three_prime_UTR |
| GAATATGCGAAGAGTGAACT+GGG | 0.557115 | 2_3:+8371524 | Msa0276150:CDS |
| GATTATTGAGAAGGAAGAGG+AGG | 0.560807 | 2_3:+8369680 | Msa0276150:CDS |
| TGTGCATGGTTCACAACCAA+TGG | 0.562874 | 2_3:-8370969 | None:intergenic |
| AGGGTGTTCAGTCTGGACAC+TGG | 0.563748 | 2_3:+8370527 | Msa0276150:CDS |
| TTGGCACTTCACTCGAATGT+GGG | 0.566178 | 2_3:+8371734 | Msa0276150:three_prime_UTR |
| CAGAGAAAAGATCAGTCGCC+TGG | 0.567745 | 2_3:+8370770 | Msa0276150:CDS |
| GGAATGGTAGCCTTGTTAAG+TGG | 0.569264 | 2_3:+8370852 | Msa0276150:CDS |
| ATTGCAAATTGTAGAGCTTG+TGG | 0.569425 | 2_3:-8372010 | None:intergenic |
| TTTGTGACTTGATACGTGAT+AGG | 0.569444 | 2_3:-8372078 | None:intergenic |
| CAGTTGCAGAGCCATTTGCA+TGG | 0.569477 | 2_3:-8371129 | None:intergenic |
| TGTGATGCTTATGTGGCTTG+AGG | 0.570573 | 2_3:-8369053 | None:intergenic |
| ACATTTCCGTAATCACGTCT+AGG | 0.572718 | 2_3:+8369077 | Msa0276150:five_prime_UTR |
| AGTTGCAGAGCCATTTGCAT+GGG | 0.577844 | 2_3:-8371128 | None:intergenic |
| GCCTGGTCAGCATGAAAGAG+AGG | 0.586042 | 2_3:+8371003 | Msa0276150:CDS |
| CAGGCACATCCATTGTCCTA+AGG | 0.586597 | 2_3:-8370916 | None:intergenic |
| TAGGGAAGAAGAGTATTGTG+GGG | 0.586899 | 2_3:-8371559 | None:intergenic |
| GTGATGCGTAACGAGTTTAG+TGG | 0.588170 | 2_3:-8372035 | None:intergenic |
| CACATCCATTGTCCTAAGGA+AGG | 0.591182 | 2_3:-8370912 | None:intergenic |
| AATACGCACATTTGACGGGT+AGG | 0.605422 | 2_3:+8370498 | Msa0276150:CDS |
| AACAGGATCAACCTGAACAA+CGG | 0.605769 | 2_3:-8370810 | None:intergenic |
| GCATAGAGCACAACGATCCA+GGG | 0.606299 | 2_3:-8371238 | None:intergenic |
| ACCTCTTGAAATAATGGACA+AGG | 0.608971 | 2_3:+8369740 | Msa0276150:CDS |
| GAATGTGGTCAGCTTGAGCA+GGG | 0.611848 | 2_3:+8371174 | Msa0276150:CDS |
| ATAAAGAGAAGGGTGATGCG+AGG | 0.613810 | 2_3:-8369119 | None:intergenic |
| CTATTAACGCTGAATCGCAA+AGG | 0.614292 | 2_3:+8369511 | Msa0276150:CDS |
| GGTACTTCAGACCTAGTACC+AGG | 0.615263 | 2_3:-8370788 | None:intergenic |
| ATGGACCTTCCTTAGGACAA+TGG | 0.618027 | 2_3:+8370907 | Msa0276150:CDS |
| AACTGATGAAGAAGAAGTAA+CGG | 0.620447 | 2_3:-8369237 | None:intergenic |
| GAACCCGGTTGCAAATGTGA+AGG | 0.621902 | 2_3:+8370874 | Msa0276150:CDS |
| GTGGGAGGATGCCAAAGCAA+AGG | 0.625285 | 2_3:+8371036 | Msa0276150:CDS |
| AATTGGATGGTTAAAACTCG+TGG | 0.626032 | 2_3:-8369029 | None:intergenic |
| TAGCCTTGTTAAGTGGAACC+CGG | 0.629187 | 2_3:+8370859 | Msa0276150:CDS |
| TGAATACATGTTCCCCGATG+CGG | 0.631138 | 2_3:+8370613 | Msa0276150:CDS |
| GGATCTTCGTCTGAATCCAA+AGG | 0.631891 | 2_3:+8369296 | Msa0276150:CDS |
| TCAGGGATTAGTAAGAACAA+AGG | 0.636754 | 2_3:+8370643 | Msa0276150:CDS |
| CCTGGTCAGCATGAAAGAGA+GGG | 0.640837 | 2_3:+8371004 | Msa0276150:CDS |
| AGAGTGCTGCAGAATAAGGA+AGG | 0.642123 | 2_3:+8370697 | Msa0276150:CDS |
| GCAACGATAGTTGCTGCAAG+AGG | 0.642926 | 2_3:-8369549 | None:intergenic |
| TGTGGCTTGAGGTAATTGGA+TGG | 0.643356 | 2_3:-8369042 | None:intergenic |
| GAAGGTTGGAAAATTTAGAG+CGG | 0.647488 | 2_3:+8371487 | Msa0276150:CDS |
| GTTAATGCATTGCATTCACA+AGG | 0.647862 | 2_3:+8370938 | Msa0276150:CDS |
| TTATTGCCAGTATTGTGTGA+TGG | 0.647994 | 2_3:-8371693 | None:intergenic |
| AAGGAGTGTGGTCTTCACAA+AGG | 0.651490 | 2_3:+8371055 | Msa0276150:CDS |
| GATGCCAAAGCAAAGGAGTG+TGG | 0.656499 | 2_3:+8371043 | Msa0276150:CDS |
| TTGGTTGTGAACCATGCACA+AGG | 0.657587 | 2_3:+8370972 | Msa0276150:CDS |
| TGGTTAAAACTCGTGGCGCG+TGG | 0.659494 | 2_3:-8369022 | None:intergenic |
| AACCCGGTTGCAAATGTGAA+GGG | 0.659605 | 2_3:+8370875 | Msa0276150:CDS |
| GCAGCAACTATCGTTGCACC+TGG | 0.665317 | 2_3:+8369555 | Msa0276150:CDS |
| ACCTGACAGAAGCGGCACCA+TGG | 0.685537 | 2_3:-8371262 | None:intergenic |
| ATGAAAGAGAGGGAAGATGG+TGG | 0.685564 | 2_3:+8371014 | Msa0276150:CDS |
| ATTTGGCAGAGAATTTAGCA+GGG | 0.695699 | 2_3:+8371456 | Msa0276150:CDS |
| AAACACAGAACACAAACGTG+CGG | 0.711281 | 2_3:+8372129 | Msa0276150:three_prime_UTR |
| CGGGGAACATGTATTCAATG+CGG | 0.729164 | 2_3:-8370607 | None:intergenic |
| TCGTTGTGCTCTATGCACCA+TGG | 0.730304 | 2_3:+8371245 | Msa0276150:CDS |
| CCTGAACCTCAACCGCATCG+GGG | 0.743554 | 2_3:-8370625 | None:intergenic |
| AGGGATTAGTAAGAACAAAG+GGG | 0.746501 | 2_3:+8370645 | Msa0276150:CDS |
| AATATGCGAAGAGTGAACTG+GGG | 0.792612 | 2_3:+8371525 | Msa0276150:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTATTGAAGAAATTTTTA+TGG | + | chr2_3:8369587-8369606 | Msa0276150:intron | 10.0% |
| !!! | ATCAAATTTTTTATGAAAGT+AGG | - | chr2_3:8370260-8370279 | None:intergenic | 15.0% |
| !!! | TATTTGTTTATGGTTTTGTT+GGG | + | chr2_3:8369850-8369869 | Msa0276150:intron | 20.0% |
| !! | GAATAGAGAATAGTATAATT+TGG | + | chr2_3:8370004-8370023 | Msa0276150:intron | 20.0% |
| !!! | AATAGTATAATTTGGCTTTA+TGG | + | chr2_3:8370012-8370031 | Msa0276150:intron | 20.0% |
| !! | TGTTTAATCTAAATTCTTAC+AGG | + | chr2_3:8371412-8371431 | Msa0276150:intron | 20.0% |
| !!! | TAATTGTAATAGTCATTTTG+AGG | + | chr2_3:8371839-8371858 | Msa0276150:three_prime_UTR | 20.0% |
| !!! | AGGTTTTGATATAAAGAGAA+GGG | - | chr2_3:8369132-8369151 | None:intergenic | 25.0% |
| ! | ATGAAATGAATGAAAAGAAG+AGG | - | chr2_3:8369152-8369171 | None:intergenic | 25.0% |
| ! | TGATAAATTATTGCTACCTT+TGG | - | chr2_3:8369315-8369334 | None:intergenic | 25.0% |
| !!! | AACGAAATTCGTTGATTTTA+GGG | + | chr2_3:8369361-8369380 | Msa0276150:intron | 25.0% |
| !!! | AATTGGTTCGTTAAGAATTT+TGG | + | chr2_3:8369431-8369450 | Msa0276150:CDS | 25.0% |
| ! | TCAATAATAAAAAACGTACC+AGG | - | chr2_3:8369576-8369595 | None:intergenic | 25.0% |
| ! | TGTTGTGTAGTATTTGTTTA+TGG | + | chr2_3:8369840-8369859 | Msa0276150:intron | 25.0% |
| !!! | GTATTTGTTTATGGTTTTGT+TGG | + | chr2_3:8369849-8369868 | Msa0276150:intron | 25.0% |
| !!! | AGGTTGATTTGATTATTCTT+AGG | + | chr2_3:8369898-8369917 | Msa0276150:intron | 25.0% |
| !! | TTGATTTGATTATTCTTAGG+AGG | + | chr2_3:8369901-8369920 | Msa0276150:intron | 25.0% |
| !! | TAGCATTTTTGTAACTGTTT+AGG | + | chr2_3:8370043-8370062 | Msa0276150:intron | 25.0% |
| ! | TTTAGGAAAGTTTACAAAAC+AGG | + | chr2_3:8370060-8370079 | Msa0276150:intron | 25.0% |
| ! | TTAGGAAAGTTTACAAAACA+GGG | + | chr2_3:8370061-8370080 | Msa0276150:intron | 25.0% |
| ! | ACAAAACAGGGAATAATTTA+CGG | + | chr2_3:8370073-8370092 | Msa0276150:intron | 25.0% |
| !! | TAAGCAAAGATTACATTTTG+AGG | + | chr2_3:8370135-8370154 | Msa0276150:intron | 25.0% |
| ! | TGCTTATAATAGTAACATGA+TGG | + | chr2_3:8370205-8370224 | Msa0276150:intron | 25.0% |
| ! | GCTTATAATAGTAACATGAT+GGG | + | chr2_3:8370206-8370225 | Msa0276150:intron | 25.0% |
| ! | CTTATAATAGTAACATGATG+GGG | + | chr2_3:8370207-8370226 | Msa0276150:intron | 25.0% |
| !!! | GAAAGTAGGTTTTTTTTTAC+TGG | - | chr2_3:8370246-8370265 | None:intergenic | 25.0% |
| ! | AGCTTATAACAAACAATAGT+TGG | - | chr2_3:8370284-8370303 | None:intergenic | 25.0% |
| !!! | ACTCTAAAGTTCTCTTTAAT+TGG | + | chr2_3:8370384-8370403 | Msa0276150:intron | 25.0% |
| ! | TAAAGTTCTCTTTAATTGGT+GGG | + | chr2_3:8370388-8370407 | Msa0276150:intron | 25.0% |
| !!! | AGTATTTTTGTTATTGCAGT+GGG | + | chr2_3:8370453-8370472 | Msa0276150:intron | 25.0% |
| ! | TTCACAAAGGTAATTTGAAA+CGG | + | chr2_3:8371068-8371087 | Msa0276150:CDS | 25.0% |
| ! | AATTGAGAATCTAGCTAAAT+TGG | + | chr2_3:8371201-8371220 | Msa0276150:CDS | 25.0% |
| !!! | TTTTCTGAAGGATACTTAAT+CGG | - | chr2_3:8371599-8371618 | None:intergenic | 25.0% |
| ! | TGGCATTTATTAATGCTTTA+AGG | + | chr2_3:8371639-8371658 | Msa0276150:CDS | 25.0% |
| !!! | AGTTGTTTATTCACTGATTT+TGG | + | chr2_3:8371715-8371734 | Msa0276150:three_prime_UTR | 25.0% |
| AAATGTTTGTGATGCTTATG+TGG | - | chr2_3:8369063-8369082 | None:intergenic | 30.0% | |
| !! | GAGGTTTTGATATAAAGAGA+AGG | - | chr2_3:8369133-8369152 | None:intergenic | 30.0% |
| TTACTTCATTCATTCTCCAA+TGG | + | chr2_3:8369208-8369227 | Msa0276150:CDS | 30.0% | |
| AACTGATGAAGAAGAAGTAA+CGG | - | chr2_3:8369240-8369259 | None:intergenic | 30.0% | |
| !!! | GAACGAAATTCGTTGATTTT+AGG | + | chr2_3:8369360-8369379 | Msa0276150:intron | 30.0% |
| ATTTGCAGAGATTATTGAGA+AGG | + | chr2_3:8369671-8369690 | Msa0276150:intron | 30.0% | |
| ! | ATGATATTGCTATTGCTTTC+AGG | + | chr2_3:8369781-8369800 | Msa0276150:CDS | 30.0% |
| !! | GATCGATTTTGTATTTCACT+CGG | - | chr2_3:8369966-8369985 | None:intergenic | 30.0% |
| !! | ATAATTTGGCTTTATGGTGT+AGG | + | chr2_3:8370018-8370037 | Msa0276150:intron | 30.0% |
| CTAAAGTTCTCTTTAATTGG+TGG | + | chr2_3:8370387-8370406 | Msa0276150:intron | 30.0% | |
| !!! | GAGTATTTTTGTTATTGCAG+TGG | + | chr2_3:8370452-8370471 | Msa0276150:intron | 30.0% |
| !!! | GTATTTTTGTTATTGCAGTG+GGG | + | chr2_3:8370454-8370473 | Msa0276150:intron | 30.0% |
| AATTGAATACGCACATTTGA+CGG | + | chr2_3:8370493-8370512 | Msa0276150:CDS | 30.0% | |
| TCAAACAATCTGTATGTTTC+TGG | - | chr2_3:8370563-8370582 | None:intergenic | 30.0% | |
| ! | TCTTCTCATTTTATGAGGAT+GGG | + | chr2_3:8370669-8370688 | Msa0276150:CDS | 30.0% |
| ! | TCACAAAGGTAATTTGAAAC+GGG | + | chr2_3:8371069-8371088 | Msa0276150:CDS | 30.0% |
| TCATGCAATATAGAAAGTTC+AGG | - | chr2_3:8371299-8371318 | None:intergenic | 30.0% | |
| TAAAATAATGCACCTTCAGT+AGG | - | chr2_3:8371365-8371384 | None:intergenic | 30.0% | |
| ATCTAAATTCTTACAGGCTA+TGG | + | chr2_3:8371418-8371437 | Msa0276150:intron | 30.0% | |
| !! | TCAATTGAGTAATTTGCTCA+AGG | + | chr2_3:8371668-8371687 | Msa0276150:three_prime_UTR | 30.0% |
| !! | TTGTAATAGTCATTTTGAGG+TGG | + | chr2_3:8371842-8371861 | Msa0276150:three_prime_UTR | 30.0% |
| !!! | TGTAATAGTCATTTTGAGGT+GGG | + | chr2_3:8371843-8371862 | Msa0276150:three_prime_UTR | 30.0% |
| GATATTCGTACATGAAAGTT+TGG | - | chr2_3:8371953-8371972 | None:intergenic | 30.0% | |
| AATTGGATGGTTAAAACTCG+TGG | - | chr2_3:8369032-8369051 | None:intergenic | 35.0% | |
| ATTGAACCTAGACGTGATTA+CGG | - | chr2_3:8369086-8369105 | None:intergenic | 35.0% | |
| AATTCCTTCTTCTCTCGTAT+CGG | + | chr2_3:8369275-8369294 | Msa0276150:CDS | 35.0% | |
| ! | GTGTTTTCAGTTTCGCAAAT+TGG | + | chr2_3:8369414-8369433 | Msa0276150:intron | 35.0% |
| TTGGAGAGAAATGTTTCATC+TGG | + | chr2_3:8369450-8369469 | Msa0276150:CDS | 35.0% | |
| TTTACCTCAAAGACGTTCTT+TGG | + | chr2_3:8369482-8369501 | Msa0276150:CDS | 35.0% | |
| AGAGATTATTGAGAAGGAAG+AGG | + | chr2_3:8369677-8369696 | Msa0276150:intron | 35.0% | |
| TGCTTCACCTCTTGAAATAA+TGG | + | chr2_3:8369734-8369753 | Msa0276150:CDS | 35.0% | |
| !! | ACCTCTTGAAATAATGGACA+AGG | + | chr2_3:8369740-8369759 | Msa0276150:CDS | 35.0% |
| ATTCGTCAATCTACAATCTC+TGG | - | chr2_3:8369988-8370007 | None:intergenic | 35.0% | |
| TTGCTTATAATAGTGATCGC+AGG | - | chr2_3:8370122-8370141 | None:intergenic | 35.0% | |
| AGTAGCGTAACTTATACACA+TGG | + | chr2_3:8370310-8370329 | Msa0276150:intron | 35.0% | |
| GTAGCGTAACTTATACACAT+GGG | + | chr2_3:8370311-8370330 | Msa0276150:intron | 35.0% | |
| ATTGAATACGCACATTTGAC+GGG | + | chr2_3:8370494-8370513 | Msa0276150:CDS | 35.0% | |
| ! | TCAGGGATTAGTAAGAACAA+AGG | + | chr2_3:8370643-8370662 | Msa0276150:CDS | 35.0% |
| ! | CAGGGATTAGTAAGAACAAA+GGG | + | chr2_3:8370644-8370663 | Msa0276150:CDS | 35.0% |
| ! | AGGGATTAGTAAGAACAAAG+GGG | + | chr2_3:8370645-8370664 | Msa0276150:CDS | 35.0% |
| ! | CTCTTCTCATTTTATGAGGA+TGG | + | chr2_3:8370668-8370687 | Msa0276150:CDS | 35.0% |
| ! | ACCTTTAAGAAGAGCTCTTA+AGG | + | chr2_3:8370724-8370743 | Msa0276150:CDS | 35.0% |
| ! | CCTTTAAGAAGAGCTCTTAA+GGG | + | chr2_3:8370725-8370744 | Msa0276150:CDS | 35.0% |
| ATGTGAAGGGTAATGACATA+TGG | + | chr2_3:8370888-8370907 | Msa0276150:CDS | 35.0% | |
| TGTGAATGCAATGCATTAAC+AGG | - | chr2_3:8370938-8370957 | None:intergenic | 35.0% | |
| GTTAATGCATTGCATTCACA+AGG | + | chr2_3:8370938-8370957 | Msa0276150:CDS | 35.0% | |
| ! | TATTTTCAACACCCAGAATG+TGG | + | chr2_3:8371159-8371178 | Msa0276150:CDS | 35.0% |
| TGAGAATCTAGCTAAATTGG+AGG | + | chr2_3:8371204-8371223 | Msa0276150:CDS | 35.0% | |
| ! | ATCATTTTACCTGACAGAAG+CGG | - | chr2_3:8371273-8371292 | None:intergenic | 35.0% |
| TAAATTCTTACAGGCTATGG+AGG | + | chr2_3:8371421-8371440 | Msa0276150:intron | 35.0% | |
| ! | GGAGGAATCATATGTTGATT+TGG | + | chr2_3:8371439-8371458 | Msa0276150:CDS | 35.0% |
| ATTTGGCAGAGAATTTAGCA+GGG | + | chr2_3:8371456-8371475 | Msa0276150:CDS | 35.0% | |
| GAAGGTTGGAAAATTTAGAG+CGG | + | chr2_3:8371487-8371506 | Msa0276150:CDS | 35.0% | |
| !! | TTAGGGAAGAAGAGTATTGT+GGG | - | chr2_3:8371563-8371582 | None:intergenic | 35.0% |
| !! | TTTAGGGAAGAAGAGTATTG+TGG | - | chr2_3:8371564-8371583 | None:intergenic | 35.0% |
| TTATTGCCAGTATTGTGTGA+TGG | - | chr2_3:8371696-8371715 | None:intergenic | 35.0% | |
| TGTAGAACATCTCTCTGTAT+AGG | + | chr2_3:8371794-8371813 | Msa0276150:three_prime_UTR | 35.0% | |
| !!! | GTAATAGTCATTTTGAGGTG+GGG | + | chr2_3:8371844-8371863 | Msa0276150:three_prime_UTR | 35.0% |
| !! | CTGTTTTTCTAGATGAGTAG+AGG | + | chr2_3:8371876-8371895 | Msa0276150:three_prime_UTR | 35.0% |
| TTTCTAGATGAGTAGAGGTA+TGG | + | chr2_3:8371881-8371900 | Msa0276150:three_prime_UTR | 35.0% | |
| ATTGCAAATTGTAGAGCTTG+TGG | - | chr2_3:8372013-8372032 | None:intergenic | 35.0% | |
| GGTGATATTTGATACGTGAT+TGG | - | chr2_3:8372060-8372079 | None:intergenic | 35.0% | |
| TTTGTGACTTGATACGTGAT+AGG | - | chr2_3:8372081-8372100 | None:intergenic | 35.0% | |
| TCAGGTTCAAATTTCGTGAT+GGG | - | chr2_3:8372110-8372129 | None:intergenic | 35.0% | |
| ! | TTCAGGTTCAAATTTCGTGA+TGG | - | chr2_3:8372111-8372130 | None:intergenic | 35.0% |
| CTTATGTGGCTTGAGGTAAT+TGG | - | chr2_3:8369049-8369068 | None:intergenic | 40.0% | |
| ACATTTCCGTAATCACGTCT+AGG | + | chr2_3:8369077-8369096 | Msa0276150:five_prime_UTR | 40.0% | |
| TTCACCAAAGAACGTCTTTG+AGG | - | chr2_3:8369489-8369508 | None:intergenic | 40.0% | |
| TCAAAGACGTTCTTTGGTGA+AGG | + | chr2_3:8369488-8369507 | Msa0276150:CDS | 40.0% | |
| CTATTAACGCTGAATCGCAA+AGG | + | chr2_3:8369511-8369530 | Msa0276150:CDS | 40.0% | |
| GATTATTGAGAAGGAAGAGG+AGG | + | chr2_3:8369680-8369699 | Msa0276150:CDS | 40.0% | |
| !! | CAAGAGGTGAAGCATTTTCA+AGG | - | chr2_3:8369728-8369747 | None:intergenic | 40.0% |
| GCCTTGTCCATTATTTCAAG+AGG | - | chr2_3:8369744-8369763 | None:intergenic | 40.0% | |
| GACAAGGCTCTTGAGAAATT+TGG | + | chr2_3:8369756-8369775 | Msa0276150:CDS | 40.0% | |
| TTGATCAAGTGAGTGGTTTC+AGG | + | chr2_3:8369878-8369897 | Msa0276150:intron | 40.0% | |
| !! | ATCAAGAGTGCTGCAGAATA+AGG | + | chr2_3:8370693-8370712 | Msa0276150:CDS | 40.0% |
| CCCTTAAGAGCTCTTCTTAA+AGG | - | chr2_3:8370728-8370747 | None:intergenic | 40.0% | |
| AACAGGATCAACCTGAACAA+CGG | - | chr2_3:8370813-8370832 | None:intergenic | 40.0% | |
| !!! | TCAGGTTGATCCTGTTTTTG+AGG | + | chr2_3:8370817-8370836 | Msa0276150:CDS | 40.0% |
| !!! | CAGGTTGATCCTGTTTTTGA+GGG | + | chr2_3:8370818-8370837 | Msa0276150:CDS | 40.0% |
| !!! | TGATCCTGTTTTTGAGGGAT+TGG | + | chr2_3:8370823-8370842 | Msa0276150:CDS | 40.0% |
| !! | TTTTTGAGGGATTGGATGGT+GGG | + | chr2_3:8370831-8370850 | Msa0276150:CDS | 40.0% |
| TTACCCTTCACATTTGCAAC+CGG | - | chr2_3:8370881-8370900 | None:intergenic | 40.0% | |
| ATGACATATGGACCTTCCTT+AGG | + | chr2_3:8370900-8370919 | Msa0276150:CDS | 40.0% | |
| TCACAAGGATACGTTTCCAT+TGG | + | chr2_3:8370953-8370972 | Msa0276150:CDS | 40.0% | |
| TCCGTTTCCATTACCATTCT+GGG | - | chr2_3:8371104-8371123 | None:intergenic | 40.0% | |
| TGTTACCATTCTCCTACTGA+AGG | + | chr2_3:8371350-8371369 | Msa0276150:intron | 40.0% | |
| GATTTGGCAGAGAATTTAGC+AGG | + | chr2_3:8371455-8371474 | Msa0276150:CDS | 40.0% | |
| ! | GTTGGAAAATTTAGAGCGGA+TGG | + | chr2_3:8371491-8371510 | Msa0276150:CDS | 40.0% |
| AGAATATGCGAAGAGTGAAC+TGG | + | chr2_3:8371523-8371542 | Msa0276150:CDS | 40.0% | |
| GAATATGCGAAGAGTGAACT+GGG | + | chr2_3:8371524-8371543 | Msa0276150:CDS | 40.0% | |
| AATATGCGAAGAGTGAACTG+GGG | + | chr2_3:8371525-8371544 | Msa0276150:CDS | 40.0% | |
| !! | TAGGGAAGAAGAGTATTGTG+GGG | - | chr2_3:8371562-8371581 | None:intergenic | 40.0% |
| TCTTCCCTAAACACTCTTCT+CGG | + | chr2_3:8371573-8371592 | Msa0276150:CDS | 40.0% | |
| ! | TCAACGTCTCTCTTTTCTGA+AGG | - | chr2_3:8371611-8371630 | None:intergenic | 40.0% |
| !! | GAGAGACGTTGATTCATTAC+TGG | + | chr2_3:8371619-8371638 | Msa0276150:CDS | 40.0% |
| AAGGTTCCATCACACAATAC+TGG | + | chr2_3:8371687-8371706 | Msa0276150:three_prime_UTR | 40.0% | |
| ! | GAATGTGGGAATGACAGTTT+TGG | + | chr2_3:8371748-8371767 | Msa0276150:three_prime_UTR | 40.0% |
| ACGTTTGTGTTCTGTGTTTC+AGG | - | chr2_3:8372128-8372147 | None:intergenic | 40.0% | |
| AAACACAGAACACAAACGTG+CGG | + | chr2_3:8372129-8372148 | Msa0276150:three_prime_UTR | 40.0% | |
| TGTGGCTTGAGGTAATTGGA+TGG | - | chr2_3:8369045-8369064 | None:intergenic | 45.0% | |
| TGTGATGCTTATGTGGCTTG+AGG | - | chr2_3:8369056-8369075 | None:intergenic | 45.0% | |
| ATAAAGAGAAGGGTGATGCG+AGG | - | chr2_3:8369122-8369141 | None:intergenic | 45.0% | |
| AGATCCGATACGAGAGAAGA+AGG | - | chr2_3:8369282-8369301 | None:intergenic | 45.0% | |
| GGATCTTCGTCTGAATCCAA+AGG | + | chr2_3:8369296-8369315 | Msa0276150:CDS | 45.0% | |
| ! | GGTTTGCTTGATCAAGTGAG+TGG | + | chr2_3:8369871-8369890 | Msa0276150:intron | 45.0% |
| ! | AATACGCACATTTGACGGGT+AGG | + | chr2_3:8370498-8370517 | Msa0276150:CDS | 45.0% |
| CGGGGAACATGTATTCAATG+CGG | - | chr2_3:8370610-8370629 | None:intergenic | 45.0% | |
| TGAATACATGTTCCCCGATG+CGG | + | chr2_3:8370613-8370632 | Msa0276150:CDS | 45.0% | |
| ! | GGGGCTCTTCTCATTTTATG+AGG | + | chr2_3:8370664-8370683 | Msa0276150:CDS | 45.0% |
| !! | AGAGTGCTGCAGAATAAGGA+AGG | + | chr2_3:8370697-8370716 | Msa0276150:CDS | 45.0% |
| CTCTTAAGGGTTTGAGAGCA+TGG | + | chr2_3:8370738-8370757 | Msa0276150:CDS | 45.0% | |
| ! | GGTTTGAGAGCATGGATAAC+TGG | + | chr2_3:8370746-8370765 | Msa0276150:CDS | 45.0% |
| ACAGGATCAACCTGAACAAC+GGG | - | chr2_3:8370812-8370831 | None:intergenic | 45.0% | |
| CCATCCAATCCCTCAAAAAC+AGG | - | chr2_3:8370830-8370849 | None:intergenic | 45.0% | |
| !!! | CCTGTTTTTGAGGGATTGGA+TGG | + | chr2_3:8370827-8370846 | Msa0276150:CDS | 45.0% |
| !! | GTTTTTGAGGGATTGGATGG+TGG | + | chr2_3:8370830-8370849 | Msa0276150:CDS | 45.0% |
| !! | GGAATGGTAGCCTTGTTAAG+TGG | + | chr2_3:8370852-8370871 | Msa0276150:CDS | 45.0% |
| !! | TAGCCTTGTTAAGTGGAACC+CGG | + | chr2_3:8370859-8370878 | Msa0276150:CDS | 45.0% |
| AACCCGGTTGCAAATGTGAA+GGG | + | chr2_3:8370875-8370894 | Msa0276150:CDS | 45.0% | |
| TACCCTTCACATTTGCAACC+GGG | - | chr2_3:8370880-8370899 | None:intergenic | 45.0% | |
| ATGGACCTTCCTTAGGACAA+TGG | + | chr2_3:8370907-8370926 | Msa0276150:CDS | 45.0% | |
| CACATCCATTGTCCTAAGGA+AGG | - | chr2_3:8370915-8370934 | None:intergenic | 45.0% | |
| TGTGCATGGTTCACAACCAA+TGG | - | chr2_3:8370972-8370991 | None:intergenic | 45.0% | |
| TTGGTTGTGAACCATGCACA+AGG | + | chr2_3:8370972-8370991 | Msa0276150:CDS | 45.0% | |
| AGCATGAAAGAGAGGGAAGA+TGG | + | chr2_3:8371011-8371030 | Msa0276150:CDS | 45.0% | |
| ATGAAAGAGAGGGAAGATGG+TGG | + | chr2_3:8371014-8371033 | Msa0276150:CDS | 45.0% | |
| AAGACCACACTCCTTTGCTT+TGG | - | chr2_3:8371050-8371069 | None:intergenic | 45.0% | |
| ! | AAGGAGTGTGGTCTTCACAA+AGG | + | chr2_3:8371055-8371074 | Msa0276150:CDS | 45.0% |
| !! | GCCCAGAATGGTAATGGAAA+CGG | + | chr2_3:8371100-8371119 | Msa0276150:CDS | 45.0% |
| CTCCGTTTCCATTACCATTC+TGG | - | chr2_3:8371105-8371124 | None:intergenic | 45.0% | |
| AGTTGCAGAGCCATTTGCAT+GGG | - | chr2_3:8371131-8371150 | None:intergenic | 45.0% | |
| ATGCACCTTCAGTAGGAGAA+TGG | - | chr2_3:8371358-8371377 | None:intergenic | 45.0% | |
| TTTGGCACTTCACTCGAATG+TGG | + | chr2_3:8371733-8371752 | Msa0276150:three_prime_UTR | 45.0% | |
| TTGGCACTTCACTCGAATGT+GGG | + | chr2_3:8371734-8371753 | Msa0276150:three_prime_UTR | 45.0% | |
| GTGATGCGTAACGAGTTTAG+TGG | - | chr2_3:8372038-8372057 | None:intergenic | 45.0% | |
| GGGTGATGCGAGGAATTTGA+AGG | - | chr2_3:8369112-8369131 | None:intergenic | 50.0% | |
| GCAACGATAGTTGCTGCAAG+AGG | - | chr2_3:8369552-8369571 | None:intergenic | 50.0% | |
| ! | ATTTGACGGGTAGGCCATTC+AGG | + | chr2_3:8370507-8370526 | Msa0276150:CDS | 50.0% |
| ! | TTTGACGGGTAGGCCATTCA+GGG | + | chr2_3:8370508-8370527 | Msa0276150:CDS | 50.0% |
| TCCAGACTGAACACCCTGAA+TGG | - | chr2_3:8370524-8370543 | None:intergenic | 50.0% | |
| !! | GATGCAGTTGAGAAGCGCTA+TGG | + | chr2_3:8370581-8370600 | Msa0276150:CDS | 50.0% |
| CAGAGAAAAGATCAGTCGCC+TGG | + | chr2_3:8370770-8370789 | Msa0276150:CDS | 50.0% | |
| AAGATCAGTCGCCTGGTACT+AGG | + | chr2_3:8370777-8370796 | Msa0276150:CDS | 50.0% | |
| GGTACTTCAGACCTAGTACC+AGG | - | chr2_3:8370791-8370810 | None:intergenic | 50.0% | |
| ! | GTCTGAAGTACCCGTTGTTC+AGG | + | chr2_3:8370799-8370818 | Msa0276150:CDS | 50.0% |
| CAACCGGGTTCCACTTAACA+AGG | - | chr2_3:8370865-8370884 | None:intergenic | 50.0% | |
| GAACCCGGTTGCAAATGTGA+AGG | + | chr2_3:8370874-8370893 | Msa0276150:CDS | 50.0% | |
| CAGGCACATCCATTGTCCTA+AGG | - | chr2_3:8370919-8370938 | None:intergenic | 50.0% | |
| TCATGCTGACCAGGCAAAAC+TGG | - | chr2_3:8370998-8371017 | None:intergenic | 50.0% | |
| CCTGGTCAGCATGAAAGAGA+GGG | + | chr2_3:8371004-8371023 | Msa0276150:CDS | 50.0% | |
| ! | AAAGAGAGGGAAGATGGTGG+TGG | + | chr2_3:8371017-8371036 | Msa0276150:CDS | 50.0% |
| ! | AAGAGAGGGAAGATGGTGGT+GGG | + | chr2_3:8371018-8371037 | Msa0276150:CDS | 50.0% |
| GATGCCAAAGCAAAGGAGTG+TGG | + | chr2_3:8371043-8371062 | Msa0276150:CDS | 50.0% | |
| GATGCTGCCCAGAATGGTAA+TGG | + | chr2_3:8371094-8371113 | Msa0276150:CDS | 50.0% | |
| CAGTTGCAGAGCCATTTGCA+TGG | - | chr2_3:8371132-8371151 | None:intergenic | 50.0% | |
| GCTCAAGCTGACCACATTCT+GGG | - | chr2_3:8371173-8371192 | None:intergenic | 50.0% | |
| TGCTCAAGCTGACCACATTC+TGG | - | chr2_3:8371174-8371193 | None:intergenic | 50.0% | |
| AGAATGTGGTCAGCTTGAGC+AGG | + | chr2_3:8371173-8371192 | Msa0276150:CDS | 50.0% | |
| GAATGTGGTCAGCTTGAGCA+GGG | + | chr2_3:8371174-8371193 | Msa0276150:CDS | 50.0% | |
| ! | CAACGATCCAGGGCTCTTTT+CGG | - | chr2_3:8371231-8371250 | None:intergenic | 50.0% |
| GCATAGAGCACAACGATCCA+GGG | - | chr2_3:8371241-8371260 | None:intergenic | 50.0% | |
| TGCATAGAGCACAACGATCC+AGG | - | chr2_3:8371242-8371261 | None:intergenic | 50.0% | |
| TCGTTGTGCTCTATGCACCA+TGG | + | chr2_3:8371245-8371264 | Msa0276150:CDS | 50.0% | |
| GCAGAGAATTTAGCAGGGTC+AGG | + | chr2_3:8371461-8371480 | Msa0276150:CDS | 50.0% | |
| TTTAGCAGGGTCAGGAGTGA+AGG | + | chr2_3:8371469-8371488 | Msa0276150:CDS | 50.0% | |
| !! | TCGGCCGAGAAGAGTGTTTA+GGG | - | chr2_3:8371580-8371599 | None:intergenic | 50.0% |
| !! | ATCGGCCGAGAAGAGTGTTT+AGG | - | chr2_3:8371581-8371600 | None:intergenic | 50.0% |
| TGGTTAAAACTCGTGGCGCG+TGG | - | chr2_3:8369025-8369044 | None:intergenic | 55.0% | |
| GAAGTAACGGCGAGAGCCAT+TGG | - | chr2_3:8369227-8369246 | None:intergenic | 55.0% | |
| GCAGCAACTATCGTTGCACC+TGG | + | chr2_3:8369555-8369574 | Msa0276150:CDS | 55.0% | |
| ! | GCCATTCAGGGTGTTCAGTC+TGG | + | chr2_3:8370520-8370539 | Msa0276150:CDS | 55.0% |
| ! | AGGGTGTTCAGTCTGGACAC+TGG | + | chr2_3:8370527-8370546 | Msa0276150:CDS | 55.0% |
| GGGTGTTCAGTCTGGACACT+GGG | + | chr2_3:8370528-8370547 | Msa0276150:CDS | 55.0% | |
| TCCCTGAACCTCAACCGCAT+CGG | - | chr2_3:8370630-8370649 | None:intergenic | 55.0% | |
| !! | GAGGGATTGGATGGTGGGAA+TGG | + | chr2_3:8370836-8370855 | Msa0276150:CDS | 55.0% |
| !! | GGCAAAACTGGCCTTGTGCA+TGG | - | chr2_3:8370986-8371005 | None:intergenic | 55.0% |
| ! | TGCACAAGGCCAGTTTTGCC+TGG | + | chr2_3:8370986-8371005 | Msa0276150:CDS | 55.0% |
| GCCTGGTCAGCATGAAAGAG+AGG | + | chr2_3:8371003-8371022 | Msa0276150:CDS | 55.0% | |
| CCCTCTCTTTCATGCTGACC+AGG | - | chr2_3:8371007-8371026 | None:intergenic | 55.0% | |
| GTGGGAGGATGCCAAAGCAA+AGG | + | chr2_3:8371036-8371055 | Msa0276150:CDS | 55.0% | |
| AACGGAGTCGCCCATGCAAA+TGG | + | chr2_3:8371118-8371137 | Msa0276150:CDS | 55.0% | |
| TGCGAAGAGTGAACTGGGGT+TGG | + | chr2_3:8371529-8371548 | Msa0276150:CDS | 55.0% | |
| GCGAAGAGTGAACTGGGGTT+GGG | + | chr2_3:8371530-8371549 | Msa0276150:CDS | 55.0% | |
| ! | GTGGCGCGTGGTGCTTGTTT+TGG | - | chr2_3:8369013-8369032 | None:intergenic | 60.0% |
| CATGTTCCCCGATGCGGTTG+AGG | + | chr2_3:8370619-8370638 | Msa0276150:CDS | 60.0% | |
| CCTGAACCTCAACCGCATCG+GGG | - | chr2_3:8370628-8370647 | None:intergenic | 60.0% | |
| CCCTGAACCTCAACCGCATC+GGG | - | chr2_3:8370629-8370648 | None:intergenic | 60.0% | |
| CCCGATGCGGTTGAGGTTCA+GGG | + | chr2_3:8370626-8370645 | Msa0276150:CDS | 60.0% | |
| !! | AGAGGGAAGATGGTGGTGGG+AGG | + | chr2_3:8371021-8371040 | Msa0276150:CDS | 60.0% |
| CGGGATGATGCTGCCCAGAA+TGG | + | chr2_3:8371088-8371107 | Msa0276150:CDS | 60.0% | |
| TGGAGGACCGAAAAGAGCCC+TGG | + | chr2_3:8371221-8371240 | Msa0276150:CDS | 60.0% | |
| !! | ACCATGGTGCCGCTTCTGTC+AGG | + | chr2_3:8371261-8371280 | Msa0276150:CDS | 60.0% |
| ACCTGACAGAAGCGGCACCA+TGG | - | chr2_3:8371265-8371284 | None:intergenic | 60.0% | |
| GCAGGGTCAGGAGTGAAGGT+TGG | + | chr2_3:8371473-8371492 | Msa0276150:CDS | 60.0% | |
| CCCCGATGCGGTTGAGGTTC+AGG | + | chr2_3:8370625-8370644 | Msa0276150:CDS | 65.0% | |
| GTGGTCAGCTTGAGCAGGGC+TGG | + | chr2_3:8371178-8371197 | Msa0276150:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_3 | gene | 8369003 | 8372175 | 8369003 | ID=Msa0276150;Name=Msa0276150 |
| chr2_3 | mRNA | 8369003 | 8372175 | 8369003 | ID=Msa0276150-mRNA-1;Parent=Msa0276150;Name=Msa0276150-mRNA-1;_AED=0.03;_eAED=0.03;_QI=101|1|1|1|1|1|5|511|510 |
| chr2_3 | exon | 8369003 | 8369317 | 8369003 | ID=Msa0276150-mRNA-1:exon:3753;Parent=Msa0276150-mRNA-1 |
| chr2_3 | exon | 8369424 | 8369576 | 8369424 | ID=Msa0276150-mRNA-1:exon:3754;Parent=Msa0276150-mRNA-1 |
| chr2_3 | exon | 8369679 | 8369802 | 8369679 | ID=Msa0276150-mRNA-1:exon:3755;Parent=Msa0276150-mRNA-1 |
| chr2_3 | exon | 8370472 | 8371282 | 8370472 | ID=Msa0276150-mRNA-1:exon:3756;Parent=Msa0276150-mRNA-1 |
| chr2_3 | exon | 8371434 | 8372175 | 8371434 | ID=Msa0276150-mRNA-1:exon:3757;Parent=Msa0276150-mRNA-1 |
| chr2_3 | five_prime_UTR | 8369003 | 8369103 | 8369003 | ID=Msa0276150-mRNA-1:five_prime_utr;Parent=Msa0276150-mRNA-1 |
| chr2_3 | CDS | 8369104 | 8369317 | 8369104 | ID=Msa0276150-mRNA-1:cds;Parent=Msa0276150-mRNA-1 |
| chr2_3 | CDS | 8369424 | 8369576 | 8369424 | ID=Msa0276150-mRNA-1:cds;Parent=Msa0276150-mRNA-1 |
| chr2_3 | CDS | 8369679 | 8369802 | 8369679 | ID=Msa0276150-mRNA-1:cds;Parent=Msa0276150-mRNA-1 |
| chr2_3 | CDS | 8370472 | 8371282 | 8370472 | ID=Msa0276150-mRNA-1:cds;Parent=Msa0276150-mRNA-1 |
| chr2_3 | CDS | 8371434 | 8371664 | 8371434 | ID=Msa0276150-mRNA-1:cds;Parent=Msa0276150-mRNA-1 |
| chr2_3 | three_prime_UTR | 8371665 | 8372175 | 8371665 | ID=Msa0276150-mRNA-1:three_prime_utr;Parent=Msa0276150-mRNA-1 |
| Gene Sequence |
| Protein sequence |
