Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0196700 | XP_013462840.1 | 97.015 | 469 | 14 | 0 | 42 | 510 | 1 | 469 | 0.0 | 949 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0196700 | sp|P92980|APR3_ARATH | 78.876 | 445 | 77 | 4 | 71 | 510 | 26 | 458 | 0.0 | 725 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0196700 | A0A072V4H5 | 97.015 | 469 | 14 | 0 | 42 | 510 | 1 | 469 | 0.0 | 949 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0196700 | Msa0196710 | 0.968400 | 1.267211e-128 | -8.615850e-47 |
| Msa0196700 | Msa0238580 | 0.958734 | 1.130248e-116 | -8.615850e-47 |
| Msa0196700 | Msa0276150 | 0.955525 | 2.482617e-113 | -8.615850e-47 |
| Msa0196700 | Msa0313050 | -0.802678 | 5.005054e-49 | -8.615850e-47 |
| Msa0196700 | Msa0338780 | 0.943037 | 2.472143e-102 | -8.615850e-47 |
| Msa0196700 | Msa0425710 | 0.820750 | 5.814873e-53 | -8.615850e-47 |
| Msa0196700 | Msa0515350 | 0.805044 | 1.614468e-49 | -8.615850e-47 |
| Msa0196700 | Msa0786970 | 0.855038 | 8.248209e-62 | -8.615850e-47 |
| Msa0196700 | Msa0822380 | 0.845433 | 4.075012e-59 | -8.615850e-47 |
| Msa0196700 | Msa1084630 | 0.847906 | 8.594036e-60 | -8.615850e-47 |
| Msa0196700 | Msa1204260 | 0.819224 | 1.299502e-52 | -8.615850e-47 |
| Msa0196700 | Msa1385580 | 0.815875 | 7.388260e-52 | -8.615850e-47 |
| Msa0196700 | Msa1400330 | 0.845989 | 2.878521e-59 | -8.615850e-47 |
| Msa0196700 | Msa1428400 | 0.805254 | 1.458840e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0196700 | MtrunA17_Chr2g0288581 | 97.015 | 469 | 14 | 0 | 42 | 510 | 1 | 469 | 0.0 | 949 |
| Msa0196700 | MtrunA17_Chr1g0189051 | 78.667 | 75 | 16 | 0 | 435 | 509 | 2 | 76 | 6.73e-31 | 114 |
| Msa0196700 | MtrunA17_Chr3g0079881 | 80.000 | 70 | 14 | 0 | 441 | 510 | 13 | 82 | 1.82e-29 | 110 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0196700 | AT4G21990.1 | 78.876 | 445 | 77 | 4 | 71 | 510 | 26 | 458 | 0.0 | 725 |
| Msa0196700 | AT4G04610.1 | 76.703 | 455 | 91 | 5 | 63 | 510 | 19 | 465 | 0.0 | 704 |
| Msa0196700 | AT1G62180.2 | 73.191 | 470 | 102 | 5 | 42 | 510 | 1 | 447 | 0.0 | 691 |
| Msa0196700 | AT1G62180.1 | 73.305 | 472 | 105 | 5 | 42 | 510 | 1 | 454 | 0.0 | 685 |
| Msa0196700 | AT4G21990.2 | 81.818 | 286 | 40 | 3 | 71 | 351 | 61 | 339 | 4.32e-168 | 478 |
Find 165 sgRNAs with CRISPR-Local
Find 271 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGTTGTTTATTCACCGATTT+TGG | 0.138911 | 2_1:+14108578 | Msa0196700:three_prime_UTR |
| AATTGGTTCGTTAAGAATTT+TGG | 0.144905 | 2_1:+14106334 | Msa0196700:CDS |
| TCAAACAATCTGTATGTTTC+TGG | 0.150664 | 2_1:-14107453 | None:intergenic |
| CTCCGTTTCCATTACCATTC+TGG | 0.158439 | 2_1:-14107995 | None:intergenic |
| TGGCATTTATTAATGCTTTA+AGG | 0.170654 | 2_1:+14108502 | Msa0196700:CDS |
| ATGATATTGCTATTGCTTTC+AGG | 0.175353 | 2_1:+14106674 | Msa0196700:CDS |
| CCCTTAAGAGCTCTTCTTAA+AGG | 0.194775 | 2_1:-14107618 | None:intergenic |
| TGCTCAAGCTGACCACATTC+TGG | 0.202249 | 2_1:-14108064 | None:intergenic |
| CCCCGATGCGGTTGAGGTTC+AGG | 0.235666 | 2_1:+14107518 | Msa0196700:CDS |
| ACGTTTGTGTTCTGTGTTTC+AGG | 0.240697 | 2_1:-14109884 | None:intergenic |
| AATTGAGAATCTAGCTAAAT+TGG | 0.278779 | 2_1:+14108094 | Msa0196700:CDS |
| TTTACCTCAAAGACGTTCTT+TGG | 0.283907 | 2_1:+14106385 | Msa0196700:CDS |
| CTTATGTGGCTTGAGGTAAT+TGG | 0.288137 | 2_1:-14105949 | None:intergenic |
| ATTTGACGGGTAGGCCATTC+AGG | 0.289307 | 2_1:+14107400 | Msa0196700:CDS |
| TCATGCTGACCAGGCAAAAC+TGG | 0.308335 | 2_1:-14107888 | None:intergenic |
| ATCAAGAGTGCTGCAGAATA+AGG | 0.321572 | 2_1:+14107586 | Msa0196700:CDS |
| TGCTTCACCTCTTGAAATAA+TGG | 0.322572 | 2_1:+14106627 | Msa0196700:CDS |
| GTCTGAAGTACCCGTTGTTC+AGG | 0.324589 | 2_1:+14107692 | Msa0196700:CDS |
| ACCTTTAAGAAGAGCTCTTA+AGG | 0.331966 | 2_1:+14107617 | Msa0196700:CDS |
| GGAGGAATCATATGTTGATT+TGG | 0.337432 | 2_1:+14108302 | Msa0196700:CDS |
| AATTCCTTCTTCTCTCGTAT+TGG | 0.346789 | 2_1:+14106178 | Msa0196700:CDS |
| GATATTCGTACATGAAAGTT+TGG | 0.350129 | 2_1:-14108813 | None:intergenic |
| ATCGGCCGAGAAGAGTGTTT+AGG | 0.350482 | 2_1:-14108441 | None:intergenic |
| TCGGCCGAGAAGAGTGTTTA+GGG | 0.355914 | 2_1:-14108440 | None:intergenic |
| CCCTGAACCTCAACCGCATC+GGG | 0.366041 | 2_1:-14107519 | None:intergenic |
| CCCGATGCGGTTGAGGTTCA+GGG | 0.369744 | 2_1:+14107519 | Msa0196700:CDS |
| TGTAGAACATCTCTCTGTAT+AGG | 0.374816 | 2_1:+14108657 | Msa0196700:three_prime_UTR |
| GGTTTGAGAGCATGGATAAC+TGG | 0.378025 | 2_1:+14107639 | Msa0196700:CDS |
| TCTTCCCTAAACACTCTTCT+CGG | 0.378246 | 2_1:+14108436 | Msa0196700:CDS |
| GCCATTCAGGGTGTTCAGTC+TGG | 0.379663 | 2_1:+14107413 | Msa0196700:CDS |
| GTGGCGCGTGGTGCTTGTTT+TGG | 0.379706 | 2_1:-14105913 | None:intergenic |
| CCCTCTCTTTCATGCTGACC+AGG | 0.381378 | 2_1:-14107897 | None:intergenic |
| TTTCTAGATGAGTAGAGTTA+TGG | 0.384640 | 2_1:+14108744 | Msa0196700:three_prime_UTR |
| TCACAAAGGTAATTTGAAAC+AGG | 0.394072 | 2_1:+14107962 | Msa0196700:CDS |
| TGCATAGAGCACAACGATCC+AGG | 0.397198 | 2_1:-14108132 | None:intergenic |
| TCCGTTTCCATTACCATTCT+GGG | 0.399151 | 2_1:-14107994 | None:intergenic |
| TGTGAATGCAATGCATTAAC+AGG | 0.400904 | 2_1:-14107828 | None:intergenic |
| GCAGAGAATTTAGCAGGGTC+AGG | 0.405699 | 2_1:+14108324 | Msa0196700:CDS |
| GAAGTAACGGCGAGAGCCAT+TGG | 0.407635 | 2_1:-14106127 | None:intergenic |
| GAATGTGGGAATGACAGTTT+TGG | 0.409739 | 2_1:+14108611 | Msa0196700:three_prime_UTR |
| TTGGAGAGAAATGTTTCATC+TGG | 0.411070 | 2_1:+14106353 | Msa0196700:CDS |
| AAGACCACACTCCTTTGCTT+TGG | 0.412645 | 2_1:-14107940 | None:intergenic |
| GCTCAAGCTGACCACATTCT+GGG | 0.413593 | 2_1:-14108063 | None:intergenic |
| TTACCCTTCACATTTGCAAC+CGG | 0.414227 | 2_1:-14107771 | None:intergenic |
| CCTTTAAGAAGAGCTCTTAA+GGG | 0.416945 | 2_1:+14107618 | Msa0196700:CDS |
| AATTGAATACGCACATTTGA+CGG | 0.418233 | 2_1:+14107386 | Msa0196700:CDS |
| GTGGTCAGCTTGAGCAGGGC+TGG | 0.421089 | 2_1:+14108071 | Msa0196700:CDS |
| AGAATATGCGAAGAGTGAAC+TGG | 0.421115 | 2_1:+14108386 | Msa0196700:CDS |
| ATTACAAATTATAGAGTTTG+TGG | 0.425688 | 2_1:+14109913 | Msa0196700:three_prime_UTR |
| ATTGAACCTAGACGTGATTA+CGG | 0.426023 | 2_1:-14105986 | None:intergenic |
| CTCTTAAGGGTTTGAGAGCA+TGG | 0.434805 | 2_1:+14107631 | Msa0196700:CDS |
| TTCACCAAAGAACGTCTTTG+AGG | 0.443814 | 2_1:-14106389 | None:intergenic |
| AAGATCAGTCGCCTGGTACT+AGG | 0.444407 | 2_1:+14107670 | Msa0196700:CDS |
| GAGAGACGTTGATTCATTAG+TGG | 0.445667 | 2_1:+14108482 | Msa0196700:CDS |
| ACAGGATCAACCTGAACAAC+GGG | 0.450053 | 2_1:-14107702 | None:intergenic |
| TGCGAAGAGTGAACTGGGGT+TGG | 0.451563 | 2_1:+14108392 | Msa0196700:CDS |
| GACAAGGCTCTTGAGAAATT+CGG | 0.454542 | 2_1:+14106649 | Msa0196700:CDS |
| GATTTGGCAGAGAATTTAGC+AGG | 0.459112 | 2_1:+14108318 | Msa0196700:CDS |
| AACGGAGTCGCCCATGCAAA+TGG | 0.462572 | 2_1:+14108011 | Msa0196700:CDS |
| TTCGAGTGAAGTGCCAAAAT+CGG | 0.468617 | 2_1:-14108591 | None:intergenic |
| AAAGAGAGGGAAGATGGTGG+TGG | 0.469201 | 2_1:+14107910 | Msa0196700:CDS |
| GCGAAGAGTGAACTGGGGTT+GGG | 0.470355 | 2_1:+14108393 | Msa0196700:CDS |
| ATGTGAAGGGTAATGACATA+TGG | 0.471063 | 2_1:+14107781 | Msa0196700:CDS |
| ACCATGGTGCCGCTTCTGTC+AGG | 0.471836 | 2_1:+14108154 | Msa0196700:CDS |
| AGAATGTGGTCAGCTTGAGC+AGG | 0.476294 | 2_1:+14108066 | Msa0196700:CDS |
| GAGGGATTGGATGGTGGGAA+TGG | 0.483411 | 2_1:+14107729 | Msa0196700:CDS |
| TTTAGGGAAGAAGAGTATTG+TGG | 0.485147 | 2_1:-14108424 | None:intergenic |
| TTTAGCAGGGTCAGGAGTGA+AGG | 0.486632 | 2_1:+14108332 | Msa0196700:CDS |
| ATGACATATGGACCTTCCTT+AGG | 0.487981 | 2_1:+14107793 | Msa0196700:CDS |
| TTAGGGAAGAAGAGTATTGT+GGG | 0.489577 | 2_1:-14108423 | None:intergenic |
| TGCAAATGGCTCTGCAACTG+TGG | 0.491504 | 2_1:+14108025 | Msa0196700:CDS |
| CAGGGATTAGTAAGAACAAA+GGG | 0.496123 | 2_1:+14107537 | Msa0196700:CDS |
| TCCAGACTGAACACCCTGAA+TGG | 0.499274 | 2_1:-14107414 | None:intergenic |
| CATGTTCCCCGATGCGGTTG+AGG | 0.501238 | 2_1:+14107512 | Msa0196700:CDS |
| TTCAGGTTCAAATTTCGTGA+TGG | 0.503048 | 2_1:-14109867 | None:intergenic |
| TCAGGTTCAAATTTCGTGAT+GGG | 0.503390 | 2_1:-14109866 | None:intergenic |
| TTACTTCATTCATTCTCCAA+TGG | 0.503658 | 2_1:+14106111 | Msa0196700:CDS |
| GTTGGAAAATTTAGAGCGGA+TGG | 0.504381 | 2_1:+14108354 | Msa0196700:CDS |
| AAATGTTTGTGATGCTTATG+TGG | 0.504614 | 2_1:-14105963 | None:intergenic |
| AAGAGAGGGAAGATGGTGGT+GGG | 0.506965 | 2_1:+14107911 | Msa0196700:CDS |
| CAACCGGGTTCCACTTAACA+AGG | 0.507691 | 2_1:-14107755 | None:intergenic |
| TCACAAGGATACGTTTCCAT+TGG | 0.510148 | 2_1:+14107846 | Msa0196700:CDS |
| TGGAGGACCGAAAAGAGCCC+TGG | 0.510799 | 2_1:+14108114 | Msa0196700:CDS |
| TTTGACGGGTAGGCCATTCA+GGG | 0.520433 | 2_1:+14107401 | Msa0196700:CDS |
| AGATCCAATACGAGAGAAGA+AGG | 0.520927 | 2_1:-14106182 | None:intergenic |
| AGAGGGAAGATGGTGGTGGG+AGG | 0.521000 | 2_1:+14107914 | Msa0196700:CDS |
| TCCCTGAACCTCAACCGCAT+CGG | 0.522772 | 2_1:-14107520 | None:intergenic |
| AGCATGAAAGAGAGGGAAGA+TGG | 0.523785 | 2_1:+14107904 | Msa0196700:CDS |
| ATGAAATGAATGAAAAGAAG+AGG | 0.524879 | 2_1:-14106052 | None:intergenic |
| GCCTTGTCCATTATTTCAAG+AGG | 0.527964 | 2_1:-14106634 | None:intergenic |
| GCCCAGAATGGTAATGGAAA+CGG | 0.529855 | 2_1:+14107993 | Msa0196700:CDS |
| GGGTGATGCGAGGAATTTGA+AGG | 0.532368 | 2_1:-14106012 | None:intergenic |
| ATTGAATACGCACATTTGAC+GGG | 0.532538 | 2_1:+14107387 | Msa0196700:CDS |
| TACCCTTCACATTTGCAACC+GGG | 0.532628 | 2_1:-14107770 | None:intergenic |
| GGGTGTTCAGTCTGGACACT+GGG | 0.534085 | 2_1:+14107421 | Msa0196700:CDS |
| GCAGGGTCAGGAGTGAAGGT+TGG | 0.536117 | 2_1:+14108336 | Msa0196700:CDS |
| GGTGATGTTTGATACGTGAT+TGG | 0.540416 | 2_1:-14109816 | None:intergenic |
| GATGCTGCCCAGAATGGTAA+TGG | 0.542560 | 2_1:+14107987 | Msa0196700:CDS |
| TTTGGCACTTCACTCGAATG+TGG | 0.545376 | 2_1:+14108596 | Msa0196700:three_prime_UTR |
| CAGTTGCAGAGCCATTTGCA+TGG | 0.546370 | 2_1:-14108022 | None:intergenic |
| TGAGAATCTAGCTAAATTGG+AGG | 0.548731 | 2_1:+14108097 | Msa0196700:CDS |
| TCAAAGACGTTCTTTGGTGA+AGG | 0.549369 | 2_1:+14106391 | Msa0196700:CDS |
| GGCAAAACTGGCCTTGTGCA+TGG | 0.554255 | 2_1:-14107876 | None:intergenic |
| GATGCAGTTGAGAAGCGCTA+TGG | 0.556616 | 2_1:+14107474 | Msa0196700:CDS |
| TAAATTCTTACAGGCTATGG+AGG | 0.556676 | 2_1:+14108284 | Msa0196700:intron |
| TCAATTGAGTAATTTGCTCA+AGG | 0.556802 | 2_1:+14108531 | Msa0196700:three_prime_UTR |
| GAATATGCGAAGAGTGAACT+GGG | 0.557115 | 2_1:+14108387 | Msa0196700:CDS |
| TGTGCATGGTTCACAACCAA+TGG | 0.562874 | 2_1:-14107862 | None:intergenic |
| AGGGTGTTCAGTCTGGACAC+TGG | 0.563748 | 2_1:+14107420 | Msa0196700:CDS |
| TTGGCACTTCACTCGAATGT+GGG | 0.566178 | 2_1:+14108597 | Msa0196700:three_prime_UTR |
| CAGAGAAAAGATCAGTCGCC+TGG | 0.567745 | 2_1:+14107663 | Msa0196700:CDS |
| CAGGATGATGCTGCCCAGAA+TGG | 0.569226 | 2_1:+14107981 | Msa0196700:CDS |
| GGAATGGTAGCCTTGTTAAG+TGG | 0.569264 | 2_1:+14107745 | Msa0196700:CDS |
| ATTGCAAATTGTAGAGCTTG+TGG | 0.569425 | 2_1:-14108873 | None:intergenic |
| TTTGTGACTTGATACGTGAT+AGG | 0.569444 | 2_1:-14109837 | None:intergenic |
| ATTTGCAGAGATTATCGAGA+AGG | 0.570289 | 2_1:+14106564 | Msa0196700:intron |
| TGTGATGCTTATGTGGCTTG+AGG | 0.570573 | 2_1:-14105956 | None:intergenic |
| ACATTTCCGTAATCACGTCT+AGG | 0.572718 | 2_1:+14105980 | Msa0196700:five_prime_UTR |
| AGAGATTATCGAGAAGGAAG+AGG | 0.575994 | 2_1:+14106570 | Msa0196700:intron |
| AGTTGCAGAGCCATTTGCAT+GGG | 0.577844 | 2_1:-14108021 | None:intergenic |
| GCCTGGTCAGCATGAAAGAG+AGG | 0.586042 | 2_1:+14107896 | Msa0196700:CDS |
| GTGATGCGTAAAGAGTTTAG+TGG | 0.586447 | 2_1:-14108898 | None:intergenic |
| CAGGCACATCCATTGTCCTA+AGG | 0.586597 | 2_1:-14107809 | None:intergenic |
| TAGGGAAGAAGAGTATTGTG+GGG | 0.586899 | 2_1:-14108422 | None:intergenic |
| CACATCCATTGTCCTAAGGA+AGG | 0.591182 | 2_1:-14107805 | None:intergenic |
| AATACGCACATTTGACGGGT+AGG | 0.605422 | 2_1:+14107391 | Msa0196700:CDS |
| AACAGGATCAACCTGAACAA+CGG | 0.605769 | 2_1:-14107703 | None:intergenic |
| GCATAGAGCACAACGATCCA+GGG | 0.606299 | 2_1:-14108131 | None:intergenic |
| ACCTCTTGAAATAATGGACA+AGG | 0.608971 | 2_1:+14106633 | Msa0196700:CDS |
| GAATGTGGTCAGCTTGAGCA+GGG | 0.611848 | 2_1:+14108067 | Msa0196700:CDS |
| ATAAAGAGAAGGGTGATGCG+AGG | 0.613810 | 2_1:-14106022 | None:intergenic |
| CTATTAACGCTGAATCGCAA+AGG | 0.614292 | 2_1:+14106414 | Msa0196700:CDS |
| GGTACTTCAGACCTAGTACC+AGG | 0.615263 | 2_1:-14107681 | None:intergenic |
| ATGGACCTTCCTTAGGACAA+TGG | 0.618027 | 2_1:+14107800 | Msa0196700:CDS |
| GAACCCGGTTGCAAATGTGA+AGG | 0.621902 | 2_1:+14107767 | Msa0196700:CDS |
| TTATTGACAGTATTGTGCGA+TGG | 0.623744 | 2_1:-14108556 | None:intergenic |
| GGATCTTCGTCTGAATCCAA+AGG | 0.623876 | 2_1:+14106199 | Msa0196700:CDS |
| GTGGGAGGATGCCAAAGCAA+AGG | 0.625285 | 2_1:+14107929 | Msa0196700:CDS |
| TAGCCTTGTTAAGTGGAACC+CGG | 0.629187 | 2_1:+14107752 | Msa0196700:CDS |
| TGAATACATGTTCCCCGATG+CGG | 0.631138 | 2_1:+14107506 | Msa0196700:CDS |
| GATTATCGAGAAGGAAGAGG+AGG | 0.632801 | 2_1:+14106573 | Msa0196700:CDS |
| TCAGGGATTAGTAAGAACAA+AGG | 0.636754 | 2_1:+14107536 | Msa0196700:CDS |
| CCTGGTCAGCATGAAAGAGA+GGG | 0.640837 | 2_1:+14107897 | Msa0196700:CDS |
| AGAGTGCTGCAGAATAAGGA+AGG | 0.642123 | 2_1:+14107590 | Msa0196700:CDS |
| GCAACGATAGTTGCTGCAAG+AGG | 0.642926 | 2_1:-14106452 | None:intergenic |
| GAAGGTTGGAAAATTTAGAG+CGG | 0.647488 | 2_1:+14108350 | Msa0196700:CDS |
| GTTAATGCATTGCATTCACA+AGG | 0.647862 | 2_1:+14107831 | Msa0196700:CDS |
| AACTGACGAAGAAGAAGTAA+CGG | 0.648634 | 2_1:-14106140 | None:intergenic |
| AATTGGATGGTGAAAACTCG+TGG | 0.650741 | 2_1:-14105932 | None:intergenic |
| AAGGAGTGTGGTCTTCACAA+AGG | 0.651490 | 2_1:+14107948 | Msa0196700:CDS |
| GATGCCAAAGCAAAGGAGTG+TGG | 0.656499 | 2_1:+14107936 | Msa0196700:CDS |
| TTGGTTGTGAACCATGCACA+AGG | 0.657587 | 2_1:+14107865 | Msa0196700:CDS |
| AACCCGGTTGCAAATGTGAA+GGG | 0.659605 | 2_1:+14107768 | Msa0196700:CDS |
| TGGTGAAAACTCGTGGCGCG+TGG | 0.662859 | 2_1:-14105925 | None:intergenic |
| GCAGCAACTATCGTTGCACC+TGG | 0.665317 | 2_1:+14106458 | Msa0196700:CDS |
| TGTGGCTTGAGGTAATTGGA+TGG | 0.680666 | 2_1:-14105945 | None:intergenic |
| ACCTGACAGAAGCGGCACCA+TGG | 0.685537 | 2_1:-14108155 | None:intergenic |
| ATGAAAGAGAGGGAAGATGG+TGG | 0.685564 | 2_1:+14107907 | Msa0196700:CDS |
| ATTTGGCAGAGAATTTAGCA+GGG | 0.695699 | 2_1:+14108319 | Msa0196700:CDS |
| AAACACAGAACACAAACGTG+CGG | 0.711281 | 2_1:+14109888 | Msa0196700:three_prime_UTR |
| CGGGGAACATGTATTCAATG+CGG | 0.729164 | 2_1:-14107500 | None:intergenic |
| TCGTTGTGCTCTATGCACCA+TGG | 0.730304 | 2_1:+14108138 | Msa0196700:CDS |
| CCTGAACCTCAACCGCATCG+GGG | 0.743554 | 2_1:-14107518 | None:intergenic |
| AGGGATTAGTAAGAACAAAG+GGG | 0.746501 | 2_1:+14107538 | Msa0196700:CDS |
| AATATGCGAAGAGTGAACTG+GGG | 0.792612 | 2_1:+14108388 | Msa0196700:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTATTGAAGAAATTTTTA+TGG | + | chr2_1:14106490-14106509 | Msa0196700:intron | 10.0% |
| !!! | TTATATTTTTGTTGTTTTAA+AGG | + | chr2_1:14109524-14109543 | Msa0196700:intron | 10.0% |
| !!! | ATCAAATTTTTTATGAAAGT+AGG | - | chr2_1:14107153-14107172 | None:intergenic | 15.0% |
| !!! | TTTAAAGGTTTTGTTTTTTA+AGG | + | chr2_1:14109539-14109558 | Msa0196700:intron | 15.0% |
| !! | GAATAGAGAATAGTATAATT+TGG | + | chr2_1:14106897-14106916 | Msa0196700:intron | 20.0% |
| !!! | AATAGTATAATTTGGCTTTA+TGG | + | chr2_1:14106905-14106924 | Msa0196700:intron | 20.0% |
| !! | AACATTAATATAGAAAGTTC+AGG | - | chr2_1:14108192-14108211 | None:intergenic | 20.0% |
| !! | TGTTTAATCTAAATTCTTAC+AGG | + | chr2_1:14108275-14108294 | Msa0196700:intron | 20.0% |
| !!! | TAATTGTAATAGTCATTTTG+AGG | + | chr2_1:14108702-14108721 | Msa0196700:three_prime_UTR | 20.0% |
| !! | ATAATTGTAATAGTAGAAAG+AGG | + | chr2_1:14109292-14109311 | Msa0196700:intron | 20.0% |
| !! | TAATTGTAATAGTAGAAAGA+GGG | + | chr2_1:14109293-14109312 | Msa0196700:intron | 20.0% |
| !!! | AGGTTTTGATATAAAGAGAA+GGG | - | chr2_1:14106035-14106054 | None:intergenic | 25.0% |
| ! | ATGAAATGAATGAAAAGAAG+AGG | - | chr2_1:14106055-14106074 | None:intergenic | 25.0% |
| ! | TGATAAATTATTGCTACCTT+TGG | - | chr2_1:14106218-14106237 | None:intergenic | 25.0% |
| !!! | AACGAAATTCGTTGATTTTA+GGG | + | chr2_1:14106264-14106283 | Msa0196700:intron | 25.0% |
| !!! | AATTGGTTCGTTAAGAATTT+TGG | + | chr2_1:14106334-14106353 | Msa0196700:CDS | 25.0% |
| ! | TCAATAATAAAAAACGTACC+AGG | - | chr2_1:14106479-14106498 | None:intergenic | 25.0% |
| !!! | AGGTTGATTTGATTATTCTT+AGG | + | chr2_1:14106791-14106810 | Msa0196700:intron | 25.0% |
| !! | TTGATTTGATTATTCTTAGG+AGG | + | chr2_1:14106794-14106813 | Msa0196700:intron | 25.0% |
| !!! | AATCGATTTTGTATTTCACT+CGG | - | chr2_1:14106859-14106878 | None:intergenic | 25.0% |
| ! | ACAAAACAGGGAATAATTTA+CGG | + | chr2_1:14106966-14106985 | Msa0196700:intron | 25.0% |
| !! | TAAGCAAAGATTACATTTTG+AGG | + | chr2_1:14107028-14107047 | Msa0196700:intron | 25.0% |
| ! | TGCTTATAATAGTAACATGA+TGG | + | chr2_1:14107098-14107117 | Msa0196700:intron | 25.0% |
| ! | GCTTATAATAGTAACATGAT+GGG | + | chr2_1:14107099-14107118 | Msa0196700:intron | 25.0% |
| ! | CTTATAATAGTAACATGATG+GGG | + | chr2_1:14107100-14107119 | Msa0196700:intron | 25.0% |
| !!! | GAAAGTAGGTTTTTTTTTAC+TGG | - | chr2_1:14107139-14107158 | None:intergenic | 25.0% |
| ! | AGCTTATAACAAACAATAGT+TGG | - | chr2_1:14107177-14107196 | None:intergenic | 25.0% |
| !!! | ACTCTAAAGTTCTCTTTAAT+TGG | + | chr2_1:14107277-14107296 | Msa0196700:intron | 25.0% |
| ! | TAAAGTTCTCTTTAATTGGT+GGG | + | chr2_1:14107281-14107300 | Msa0196700:intron | 25.0% |
| !!! | AGTATTTTTGTTATTGCAGT+GGG | + | chr2_1:14107346-14107365 | Msa0196700:intron | 25.0% |
| ! | AATTGAGAATCTAGCTAAAT+TGG | + | chr2_1:14108094-14108113 | Msa0196700:CDS | 25.0% |
| !!! | TTTTCTGAAGGATACTTAAT+CGG | - | chr2_1:14108462-14108481 | None:intergenic | 25.0% |
| ! | TGGCATTTATTAATGCTTTA+AGG | + | chr2_1:14108502-14108521 | Msa0196700:CDS | 25.0% |
| ! | AAAAAGTTAATGCTTTCACA+AGG | + | chr2_1:14109317-14109336 | Msa0196700:intron | 25.0% |
| ! | GGAGTATATTTATATATGAG+CGG | + | chr2_1:14109406-14109425 | Msa0196700:intron | 25.0% |
| ! | ATACAACATAAAACCAATAG+TGG | + | chr2_1:14109439-14109458 | Msa0196700:intron | 25.0% |
| !! | ATAATGCAAAACCTTTAGAA+AGG | - | chr2_1:14109508-14109527 | None:intergenic | 25.0% |
| !! | TTTAAAATTCACGAACAACT+CGG | - | chr2_1:14109662-14109681 | None:intergenic | 25.0% |
| AAATGTTTGTGATGCTTATG+TGG | - | chr2_1:14105966-14105985 | None:intergenic | 30.0% | |
| !! | GAGGTTTTGATATAAAGAGA+AGG | - | chr2_1:14106036-14106055 | None:intergenic | 30.0% |
| TTACTTCATTCATTCTCCAA+TGG | + | chr2_1:14106111-14106130 | Msa0196700:CDS | 30.0% | |
| !!! | GAACGAAATTCGTTGATTTT+AGG | + | chr2_1:14106263-14106282 | Msa0196700:intron | 30.0% |
| ! | ATGATATTGCTATTGCTTTC+AGG | + | chr2_1:14106674-14106693 | Msa0196700:CDS | 30.0% |
| !! | TGATTTTGTTGTGTAGAGTT+TGG | + | chr2_1:14106727-14106746 | Msa0196700:intron | 30.0% |
| !!! | AGTTTGGTTATGGTTTTGTT+GGG | + | chr2_1:14106743-14106762 | Msa0196700:intron | 30.0% |
| !! | ATAATTTGGCTTTATGGTGT+AGG | + | chr2_1:14106911-14106930 | Msa0196700:intron | 30.0% |
| ! | TAGCATTTTTGTAACTGCTT+AGG | + | chr2_1:14106936-14106955 | Msa0196700:intron | 30.0% |
| TTAGGACAGTTTACAAAACA+GGG | + | chr2_1:14106954-14106973 | Msa0196700:intron | 30.0% | |
| CTAAAGTTCTCTTTAATTGG+TGG | + | chr2_1:14107280-14107299 | Msa0196700:intron | 30.0% | |
| !!! | GAGTATTTTTGTTATTGCAG+TGG | + | chr2_1:14107345-14107364 | Msa0196700:intron | 30.0% |
| !!! | GTATTTTTGTTATTGCAGTG+GGG | + | chr2_1:14107347-14107366 | Msa0196700:intron | 30.0% |
| AATTGAATACGCACATTTGA+CGG | + | chr2_1:14107386-14107405 | Msa0196700:CDS | 30.0% | |
| TCAAACAATCTGTATGTTTC+TGG | - | chr2_1:14107456-14107475 | None:intergenic | 30.0% | |
| ! | TCTTCTCATTTTATGAGGAT+GGG | + | chr2_1:14107562-14107581 | Msa0196700:CDS | 30.0% |
| ! | TCACAAAGGTAATTTGAAAC+AGG | + | chr2_1:14107962-14107981 | Msa0196700:CDS | 30.0% |
| TAAAATAATGCACCTTCAGT+AGG | - | chr2_1:14108228-14108247 | None:intergenic | 30.0% | |
| ATCTAAATTCTTACAGGCTA+TGG | + | chr2_1:14108281-14108300 | Msa0196700:intron | 30.0% | |
| !! | TCAATTGAGTAATTTGCTCA+AGG | + | chr2_1:14108531-14108550 | Msa0196700:three_prime_UTR | 30.0% |
| !!! | AGTTGTTTATTCACCGATTT+TGG | + | chr2_1:14108578-14108597 | Msa0196700:three_prime_UTR | 30.0% |
| !! | TTGTAATAGTCATTTTGAGG+TGG | + | chr2_1:14108705-14108724 | Msa0196700:three_prime_UTR | 30.0% |
| !!! | TGTAATAGTCATTTTGAGGT+GGG | + | chr2_1:14108706-14108725 | Msa0196700:three_prime_UTR | 30.0% |
| TTTCTAGATGAGTAGAGTTA+TGG | + | chr2_1:14108744-14108763 | Msa0196700:three_prime_UTR | 30.0% | |
| GATATTCGTACATGAAAGTT+TGG | - | chr2_1:14108816-14108835 | None:intergenic | 30.0% | |
| ! | GATAATTGGTTCATTGAACT+TGG | + | chr2_1:14108972-14108991 | Msa0196700:intron | 30.0% |
| ! | TTAATATGATTCGACTCGTT+TGG | + | chr2_1:14109064-14109083 | Msa0196700:intron | 30.0% |
| ! | AGTTTTGCAAAAGATTAGAG+AGG | + | chr2_1:14109382-14109401 | Msa0196700:intron | 30.0% |
| !!! | AACGAACCTTTTTTTTAGCT+CGG | - | chr2_1:14109695-14109714 | None:intergenic | 30.0% |
| ATTGAACCTAGACGTGATTA+CGG | - | chr2_1:14105989-14106008 | None:intergenic | 35.0% | |
| AACTGACGAAGAAGAAGTAA+CGG | - | chr2_1:14106143-14106162 | None:intergenic | 35.0% | |
| AATTCCTTCTTCTCTCGTAT+TGG | + | chr2_1:14106178-14106197 | Msa0196700:CDS | 35.0% | |
| ! | GTGTTTTCAGTTTCGCAAAT+TGG | + | chr2_1:14106317-14106336 | Msa0196700:intron | 35.0% |
| TTGGAGAGAAATGTTTCATC+TGG | + | chr2_1:14106353-14106372 | Msa0196700:CDS | 35.0% | |
| TTTACCTCAAAGACGTTCTT+TGG | + | chr2_1:14106385-14106404 | Msa0196700:CDS | 35.0% | |
| ATTTGCAGAGATTATCGAGA+AGG | + | chr2_1:14106564-14106583 | Msa0196700:intron | 35.0% | |
| TGCTTCACCTCTTGAAATAA+TGG | + | chr2_1:14106627-14106646 | Msa0196700:CDS | 35.0% | |
| !! | ACCTCTTGAAATAATGGACA+AGG | + | chr2_1:14106633-14106652 | Msa0196700:CDS | 35.0% |
| ! | TATTGCTATTGCTTTCAGGT+TGG | + | chr2_1:14106678-14106697 | Msa0196700:intron | 35.0% |
| TGTTGTGTAGAGTTTGGTTA+TGG | + | chr2_1:14106733-14106752 | Msa0196700:intron | 35.0% | |
| !!! | GAGTTTGGTTATGGTTTTGT+TGG | + | chr2_1:14106742-14106761 | Msa0196700:intron | 35.0% |
| CTTAGGACAGTTTACAAAAC+AGG | + | chr2_1:14106953-14106972 | Msa0196700:intron | 35.0% | |
| ATTGAATACGCACATTTGAC+GGG | + | chr2_1:14107387-14107406 | Msa0196700:CDS | 35.0% | |
| ! | TCAGGGATTAGTAAGAACAA+AGG | + | chr2_1:14107536-14107555 | Msa0196700:CDS | 35.0% |
| ! | CAGGGATTAGTAAGAACAAA+GGG | + | chr2_1:14107537-14107556 | Msa0196700:CDS | 35.0% |
| ! | AGGGATTAGTAAGAACAAAG+GGG | + | chr2_1:14107538-14107557 | Msa0196700:CDS | 35.0% |
| ! | CTCTTCTCATTTTATGAGGA+TGG | + | chr2_1:14107561-14107580 | Msa0196700:CDS | 35.0% |
| ! | ACCTTTAAGAAGAGCTCTTA+AGG | + | chr2_1:14107617-14107636 | Msa0196700:CDS | 35.0% |
| ! | CCTTTAAGAAGAGCTCTTAA+GGG | + | chr2_1:14107618-14107637 | Msa0196700:CDS | 35.0% |
| ATGTGAAGGGTAATGACATA+TGG | + | chr2_1:14107781-14107800 | Msa0196700:CDS | 35.0% | |
| TGTGAATGCAATGCATTAAC+AGG | - | chr2_1:14107831-14107850 | None:intergenic | 35.0% | |
| GTTAATGCATTGCATTCACA+AGG | + | chr2_1:14107831-14107850 | Msa0196700:CDS | 35.0% | |
| ! | TATTTTCAACACCCAGAATG+TGG | + | chr2_1:14108052-14108071 | Msa0196700:CDS | 35.0% |
| TGAGAATCTAGCTAAATTGG+AGG | + | chr2_1:14108097-14108116 | Msa0196700:CDS | 35.0% | |
| ! | ATCATTTTACCTGACAGAAG+CGG | - | chr2_1:14108166-14108185 | None:intergenic | 35.0% |
| TAAATTCTTACAGGCTATGG+AGG | + | chr2_1:14108284-14108303 | Msa0196700:intron | 35.0% | |
| ! | GGAGGAATCATATGTTGATT+TGG | + | chr2_1:14108302-14108321 | Msa0196700:CDS | 35.0% |
| ATTTGGCAGAGAATTTAGCA+GGG | + | chr2_1:14108319-14108338 | Msa0196700:CDS | 35.0% | |
| GAAGGTTGGAAAATTTAGAG+CGG | + | chr2_1:14108350-14108369 | Msa0196700:CDS | 35.0% | |
| !! | TTAGGGAAGAAGAGTATTGT+GGG | - | chr2_1:14108426-14108445 | None:intergenic | 35.0% |
| !! | TTTAGGGAAGAAGAGTATTG+TGG | - | chr2_1:14108427-14108446 | None:intergenic | 35.0% |
| TTATTGACAGTATTGTGCGA+TGG | - | chr2_1:14108559-14108578 | None:intergenic | 35.0% | |
| TGTAGAACATCTCTCTGTAT+AGG | + | chr2_1:14108657-14108676 | Msa0196700:three_prime_UTR | 35.0% | |
| !!! | GTAATAGTCATTTTGAGGTG+GGG | + | chr2_1:14108707-14108726 | Msa0196700:three_prime_UTR | 35.0% |
| ATTGCAAATTGTAGAGCTTG+TGG | - | chr2_1:14108876-14108895 | None:intergenic | 35.0% | |
| TAAACTCTTTACGCATCACT+AGG | + | chr2_1:14108902-14108921 | Msa0196700:intron | 35.0% | |
| AAACTCTTTACGCATCACTA+GGG | + | chr2_1:14108903-14108922 | Msa0196700:intron | 35.0% | |
| !!! | GAACTATTTTCGAGTTGGTT+CGG | - | chr2_1:14108940-14108959 | None:intergenic | 35.0% |
| !!! | GTATCGAACTATTTTCGAGT+TGG | - | chr2_1:14108945-14108964 | None:intergenic | 35.0% |
| ! | TCGATACTCGATTCGATAAT+TGG | + | chr2_1:14108958-14108977 | Msa0196700:intron | 35.0% |
| CAACTCAAGTTCAACTCATT+TGG | - | chr2_1:14109006-14109025 | None:intergenic | 35.0% | |
| TTTGCAAAAGATTAGAGAGG+AGG | + | chr2_1:14109385-14109404 | Msa0196700:intron | 35.0% | |
| GTAGCATATACTACCACTAT+TGG | - | chr2_1:14109455-14109474 | None:intergenic | 35.0% | |
| GGTAGTATATGCTACAGTAA+CGG | + | chr2_1:14109460-14109479 | Msa0196700:intron | 35.0% | |
| AAGTGCTAGTACCTTTCTAA+AGG | + | chr2_1:14109494-14109513 | Msa0196700:intron | 35.0% | |
| ATATGCAATTTGAGCAAACG+AGG | + | chr2_1:14109618-14109637 | Msa0196700:intron | 35.0% | |
| !!! | ACGAACCTTTTTTTTAGCTC+GGG | - | chr2_1:14109694-14109713 | None:intergenic | 35.0% |
| TTTGTGACTTGATACGTGAT+AGG | - | chr2_1:14109840-14109859 | None:intergenic | 35.0% | |
| TCAGGTTCAAATTTCGTGAT+GGG | - | chr2_1:14109869-14109888 | None:intergenic | 35.0% | |
| ! | TTCAGGTTCAAATTTCGTGA+TGG | - | chr2_1:14109870-14109889 | None:intergenic | 35.0% |
| AATTGGATGGTGAAAACTCG+TGG | - | chr2_1:14105935-14105954 | None:intergenic | 40.0% | |
| CTTATGTGGCTTGAGGTAAT+TGG | - | chr2_1:14105952-14105971 | None:intergenic | 40.0% | |
| ACATTTCCGTAATCACGTCT+AGG | + | chr2_1:14105980-14105999 | Msa0196700:five_prime_UTR | 40.0% | |
| AGATCCAATACGAGAGAAGA+AGG | - | chr2_1:14106185-14106204 | None:intergenic | 40.0% | |
| TTCACCAAAGAACGTCTTTG+AGG | - | chr2_1:14106392-14106411 | None:intergenic | 40.0% | |
| TCAAAGACGTTCTTTGGTGA+AGG | + | chr2_1:14106391-14106410 | Msa0196700:CDS | 40.0% | |
| CTATTAACGCTGAATCGCAA+AGG | + | chr2_1:14106414-14106433 | Msa0196700:CDS | 40.0% | |
| AGAGATTATCGAGAAGGAAG+AGG | + | chr2_1:14106570-14106589 | Msa0196700:intron | 40.0% | |
| !! | CAAGAGGTGAAGCATTTTCA+AGG | - | chr2_1:14106621-14106640 | None:intergenic | 40.0% |
| GCCTTGTCCATTATTTCAAG+AGG | - | chr2_1:14106637-14106656 | None:intergenic | 40.0% | |
| GACAAGGCTCTTGAGAAATT+CGG | + | chr2_1:14106649-14106668 | Msa0196700:CDS | 40.0% | |
| TTGATCATGTGAGTGGTTTC+AGG | + | chr2_1:14106771-14106790 | Msa0196700:intron | 40.0% | |
| TTGCTTATAATAGTGACCGC+AGG | - | chr2_1:14107015-14107034 | None:intergenic | 40.0% | |
| !! | ATCAAGAGTGCTGCAGAATA+AGG | + | chr2_1:14107586-14107605 | Msa0196700:CDS | 40.0% |
| CCCTTAAGAGCTCTTCTTAA+AGG | - | chr2_1:14107621-14107640 | None:intergenic | 40.0% | |
| AACAGGATCAACCTGAACAA+CGG | - | chr2_1:14107706-14107725 | None:intergenic | 40.0% | |
| !!! | TCAGGTTGATCCTGTTTTTG+AGG | + | chr2_1:14107710-14107729 | Msa0196700:CDS | 40.0% |
| !!! | CAGGTTGATCCTGTTTTTGA+GGG | + | chr2_1:14107711-14107730 | Msa0196700:CDS | 40.0% |
| !!! | TGATCCTGTTTTTGAGGGAT+TGG | + | chr2_1:14107716-14107735 | Msa0196700:CDS | 40.0% |
| !! | TTTTTGAGGGATTGGATGGT+GGG | + | chr2_1:14107724-14107743 | Msa0196700:CDS | 40.0% |
| TTACCCTTCACATTTGCAAC+CGG | - | chr2_1:14107774-14107793 | None:intergenic | 40.0% | |
| ATGACATATGGACCTTCCTT+AGG | + | chr2_1:14107793-14107812 | Msa0196700:CDS | 40.0% | |
| TCACAAGGATACGTTTCCAT+TGG | + | chr2_1:14107846-14107865 | Msa0196700:CDS | 40.0% | |
| TCCGTTTCCATTACCATTCT+GGG | - | chr2_1:14107997-14108016 | None:intergenic | 40.0% | |
| TGTTACCATTCTCCTACTGA+AGG | + | chr2_1:14108213-14108232 | Msa0196700:intron | 40.0% | |
| GATTTGGCAGAGAATTTAGC+AGG | + | chr2_1:14108318-14108337 | Msa0196700:CDS | 40.0% | |
| ! | GTTGGAAAATTTAGAGCGGA+TGG | + | chr2_1:14108354-14108373 | Msa0196700:CDS | 40.0% |
| AGAATATGCGAAGAGTGAAC+TGG | + | chr2_1:14108386-14108405 | Msa0196700:CDS | 40.0% | |
| GAATATGCGAAGAGTGAACT+GGG | + | chr2_1:14108387-14108406 | Msa0196700:CDS | 40.0% | |
| AATATGCGAAGAGTGAACTG+GGG | + | chr2_1:14108388-14108407 | Msa0196700:CDS | 40.0% | |
| !! | TAGGGAAGAAGAGTATTGTG+GGG | - | chr2_1:14108425-14108444 | None:intergenic | 40.0% |
| TCTTCCCTAAACACTCTTCT+CGG | + | chr2_1:14108436-14108455 | Msa0196700:CDS | 40.0% | |
| ! | TCAACGTCTCTCTTTTCTGA+AGG | - | chr2_1:14108474-14108493 | None:intergenic | 40.0% |
| !! | GAGAGACGTTGATTCATTAG+TGG | + | chr2_1:14108482-14108501 | Msa0196700:CDS | 40.0% |
| ! | TTCGAGTGAAGTGCCAAAAT+CGG | - | chr2_1:14108594-14108613 | None:intergenic | 40.0% |
| ! | GAATGTGGGAATGACAGTTT+TGG | + | chr2_1:14108611-14108630 | Msa0196700:three_prime_UTR | 40.0% |
| GTGATGCGTAAAGAGTTTAG+TGG | - | chr2_1:14108901-14108920 | None:intergenic | 40.0% | |
| TGTGTGTATATATGTCGAGC+TGG | - | chr2_1:14109098-14109117 | None:intergenic | 40.0% | |
| AATTCACGAACAACTCGGTT+CGG | - | chr2_1:14109657-14109676 | None:intergenic | 40.0% | |
| !!! | CCTTTTTTTTAGCTCGGGTT+CGG | - | chr2_1:14109689-14109708 | None:intergenic | 40.0% |
| GGTGATGTTTGATACGTGAT+TGG | - | chr2_1:14109819-14109838 | None:intergenic | 40.0% | |
| ACGTTTGTGTTCTGTGTTTC+AGG | - | chr2_1:14109887-14109906 | None:intergenic | 40.0% | |
| AAACACAGAACACAAACGTG+CGG | + | chr2_1:14109888-14109907 | Msa0196700:three_prime_UTR | 40.0% | |
| TGTGGCTTGAGGTAATTGGA+TGG | - | chr2_1:14105948-14105967 | None:intergenic | 45.0% | |
| TGTGATGCTTATGTGGCTTG+AGG | - | chr2_1:14105959-14105978 | None:intergenic | 45.0% | |
| ATAAAGAGAAGGGTGATGCG+AGG | - | chr2_1:14106025-14106044 | None:intergenic | 45.0% | |
| GGATCTTCGTCTGAATCCAA+AGG | + | chr2_1:14106199-14106218 | Msa0196700:CDS | 45.0% | |
| GATTATCGAGAAGGAAGAGG+AGG | + | chr2_1:14106573-14106592 | Msa0196700:CDS | 45.0% | |
| ! | GGTTTGCTTGATCATGTGAG+TGG | + | chr2_1:14106764-14106783 | Msa0196700:intron | 45.0% |
| ATAACGTGCAAATGCTCCTG+CGG | + | chr2_1:14106996-14107015 | Msa0196700:intron | 45.0% | |
| ! | AATACGCACATTTGACGGGT+AGG | + | chr2_1:14107391-14107410 | Msa0196700:CDS | 45.0% |
| CGGGGAACATGTATTCAATG+CGG | - | chr2_1:14107503-14107522 | None:intergenic | 45.0% | |
| TGAATACATGTTCCCCGATG+CGG | + | chr2_1:14107506-14107525 | Msa0196700:CDS | 45.0% | |
| ! | GGGGCTCTTCTCATTTTATG+AGG | + | chr2_1:14107557-14107576 | Msa0196700:CDS | 45.0% |
| !! | AGAGTGCTGCAGAATAAGGA+AGG | + | chr2_1:14107590-14107609 | Msa0196700:CDS | 45.0% |
| CTCTTAAGGGTTTGAGAGCA+TGG | + | chr2_1:14107631-14107650 | Msa0196700:CDS | 45.0% | |
| ! | GGTTTGAGAGCATGGATAAC+TGG | + | chr2_1:14107639-14107658 | Msa0196700:CDS | 45.0% |
| ACAGGATCAACCTGAACAAC+GGG | - | chr2_1:14107705-14107724 | None:intergenic | 45.0% | |
| CCATCCAATCCCTCAAAAAC+AGG | - | chr2_1:14107723-14107742 | None:intergenic | 45.0% | |
| !!! | CCTGTTTTTGAGGGATTGGA+TGG | + | chr2_1:14107720-14107739 | Msa0196700:CDS | 45.0% |
| !! | GTTTTTGAGGGATTGGATGG+TGG | + | chr2_1:14107723-14107742 | Msa0196700:CDS | 45.0% |
| !! | GGAATGGTAGCCTTGTTAAG+TGG | + | chr2_1:14107745-14107764 | Msa0196700:CDS | 45.0% |
| !! | TAGCCTTGTTAAGTGGAACC+CGG | + | chr2_1:14107752-14107771 | Msa0196700:CDS | 45.0% |
| AACCCGGTTGCAAATGTGAA+GGG | + | chr2_1:14107768-14107787 | Msa0196700:CDS | 45.0% | |
| TACCCTTCACATTTGCAACC+GGG | - | chr2_1:14107773-14107792 | None:intergenic | 45.0% | |
| ATGGACCTTCCTTAGGACAA+TGG | + | chr2_1:14107800-14107819 | Msa0196700:CDS | 45.0% | |
| CACATCCATTGTCCTAAGGA+AGG | - | chr2_1:14107808-14107827 | None:intergenic | 45.0% | |
| TGTGCATGGTTCACAACCAA+TGG | - | chr2_1:14107865-14107884 | None:intergenic | 45.0% | |
| TTGGTTGTGAACCATGCACA+AGG | + | chr2_1:14107865-14107884 | Msa0196700:CDS | 45.0% | |
| AGCATGAAAGAGAGGGAAGA+TGG | + | chr2_1:14107904-14107923 | Msa0196700:CDS | 45.0% | |
| ATGAAAGAGAGGGAAGATGG+TGG | + | chr2_1:14107907-14107926 | Msa0196700:CDS | 45.0% | |
| AAGACCACACTCCTTTGCTT+TGG | - | chr2_1:14107943-14107962 | None:intergenic | 45.0% | |
| ! | AAGGAGTGTGGTCTTCACAA+AGG | + | chr2_1:14107948-14107967 | Msa0196700:CDS | 45.0% |
| !! | GCCCAGAATGGTAATGGAAA+CGG | + | chr2_1:14107993-14108012 | Msa0196700:CDS | 45.0% |
| CTCCGTTTCCATTACCATTC+TGG | - | chr2_1:14107998-14108017 | None:intergenic | 45.0% | |
| AGTTGCAGAGCCATTTGCAT+GGG | - | chr2_1:14108024-14108043 | None:intergenic | 45.0% | |
| ATGCACCTTCAGTAGGAGAA+TGG | - | chr2_1:14108221-14108240 | None:intergenic | 45.0% | |
| TTTGGCACTTCACTCGAATG+TGG | + | chr2_1:14108596-14108615 | Msa0196700:three_prime_UTR | 45.0% | |
| TTGGCACTTCACTCGAATGT+GGG | + | chr2_1:14108597-14108616 | Msa0196700:three_prime_UTR | 45.0% | |
| GCACAAAACTTGTCCCACAT+CGG | + | chr2_1:14109357-14109376 | Msa0196700:intron | 45.0% | |
| CACAAAACTTGTCCCACATC+GGG | + | chr2_1:14109358-14109377 | Msa0196700:intron | 45.0% | |
| ACAAAACTTGTCCCACATCG+GGG | + | chr2_1:14109359-14109378 | Msa0196700:intron | 45.0% | |
| TTTGCAAAACTCCCCGATGT+GGG | - | chr2_1:14109373-14109392 | None:intergenic | 45.0% | |
| ! | TTTTGCAAAACTCCCCGATG+TGG | - | chr2_1:14109374-14109393 | None:intergenic | 45.0% |
| CCGAACCCGAGCTAAAAAAA+AGG | + | chr2_1:14109686-14109705 | Msa0196700:intron | 45.0% | |
| ! | CGACTCGACTCGATAAGAAT+TGG | - | chr2_1:14109746-14109765 | None:intergenic | 45.0% |
| !! | TACGTGATTGGTGATGCGTA+CGG | - | chr2_1:14109807-14109826 | None:intergenic | 45.0% |
| GGGTGATGCGAGGAATTTGA+AGG | - | chr2_1:14106015-14106034 | None:intergenic | 50.0% | |
| GCAACGATAGTTGCTGCAAG+AGG | - | chr2_1:14106455-14106474 | None:intergenic | 50.0% | |
| ! | ATTTGACGGGTAGGCCATTC+AGG | + | chr2_1:14107400-14107419 | Msa0196700:CDS | 50.0% |
| ! | TTTGACGGGTAGGCCATTCA+GGG | + | chr2_1:14107401-14107420 | Msa0196700:CDS | 50.0% |
| TCCAGACTGAACACCCTGAA+TGG | - | chr2_1:14107417-14107436 | None:intergenic | 50.0% | |
| !! | GATGCAGTTGAGAAGCGCTA+TGG | + | chr2_1:14107474-14107493 | Msa0196700:CDS | 50.0% |
| CAGAGAAAAGATCAGTCGCC+TGG | + | chr2_1:14107663-14107682 | Msa0196700:CDS | 50.0% | |
| AAGATCAGTCGCCTGGTACT+AGG | + | chr2_1:14107670-14107689 | Msa0196700:CDS | 50.0% | |
| GGTACTTCAGACCTAGTACC+AGG | - | chr2_1:14107684-14107703 | None:intergenic | 50.0% | |
| ! | GTCTGAAGTACCCGTTGTTC+AGG | + | chr2_1:14107692-14107711 | Msa0196700:CDS | 50.0% |
| CAACCGGGTTCCACTTAACA+AGG | - | chr2_1:14107758-14107777 | None:intergenic | 50.0% | |
| GAACCCGGTTGCAAATGTGA+AGG | + | chr2_1:14107767-14107786 | Msa0196700:CDS | 50.0% | |
| CAGGCACATCCATTGTCCTA+AGG | - | chr2_1:14107812-14107831 | None:intergenic | 50.0% | |
| TCATGCTGACCAGGCAAAAC+TGG | - | chr2_1:14107891-14107910 | None:intergenic | 50.0% | |
| CCTGGTCAGCATGAAAGAGA+GGG | + | chr2_1:14107897-14107916 | Msa0196700:CDS | 50.0% | |
| ! | AAAGAGAGGGAAGATGGTGG+TGG | + | chr2_1:14107910-14107929 | Msa0196700:CDS | 50.0% |
| ! | AAGAGAGGGAAGATGGTGGT+GGG | + | chr2_1:14107911-14107930 | Msa0196700:CDS | 50.0% |
| GATGCCAAAGCAAAGGAGTG+TGG | + | chr2_1:14107936-14107955 | Msa0196700:CDS | 50.0% | |
| GATGCTGCCCAGAATGGTAA+TGG | + | chr2_1:14107987-14108006 | Msa0196700:CDS | 50.0% | |
| CAGTTGCAGAGCCATTTGCA+TGG | - | chr2_1:14108025-14108044 | None:intergenic | 50.0% | |
| ! | TGCAAATGGCTCTGCAACTG+TGG | + | chr2_1:14108025-14108044 | Msa0196700:CDS | 50.0% |
| GCTCAAGCTGACCACATTCT+GGG | - | chr2_1:14108066-14108085 | None:intergenic | 50.0% | |
| TGCTCAAGCTGACCACATTC+TGG | - | chr2_1:14108067-14108086 | None:intergenic | 50.0% | |
| AGAATGTGGTCAGCTTGAGC+AGG | + | chr2_1:14108066-14108085 | Msa0196700:CDS | 50.0% | |
| GAATGTGGTCAGCTTGAGCA+GGG | + | chr2_1:14108067-14108086 | Msa0196700:CDS | 50.0% | |
| ! | CAACGATCCAGGGCTCTTTT+CGG | - | chr2_1:14108124-14108143 | None:intergenic | 50.0% |
| GCATAGAGCACAACGATCCA+GGG | - | chr2_1:14108134-14108153 | None:intergenic | 50.0% | |
| TGCATAGAGCACAACGATCC+AGG | - | chr2_1:14108135-14108154 | None:intergenic | 50.0% | |
| TCGTTGTGCTCTATGCACCA+TGG | + | chr2_1:14108138-14108157 | Msa0196700:CDS | 50.0% | |
| GCAGAGAATTTAGCAGGGTC+AGG | + | chr2_1:14108324-14108343 | Msa0196700:CDS | 50.0% | |
| TTTAGCAGGGTCAGGAGTGA+AGG | + | chr2_1:14108332-14108351 | Msa0196700:CDS | 50.0% | |
| !! | TCGGCCGAGAAGAGTGTTTA+GGG | - | chr2_1:14108443-14108462 | None:intergenic | 50.0% |
| !! | ATCGGCCGAGAAGAGTGTTT+AGG | - | chr2_1:14108444-14108463 | None:intergenic | 50.0% |
| GAAGTAACGGCGAGAGCCAT+TGG | - | chr2_1:14106130-14106149 | None:intergenic | 55.0% | |
| GCAGCAACTATCGTTGCACC+TGG | + | chr2_1:14106458-14106477 | Msa0196700:CDS | 55.0% | |
| ! | GCCATTCAGGGTGTTCAGTC+TGG | + | chr2_1:14107413-14107432 | Msa0196700:CDS | 55.0% |
| ! | AGGGTGTTCAGTCTGGACAC+TGG | + | chr2_1:14107420-14107439 | Msa0196700:CDS | 55.0% |
| GGGTGTTCAGTCTGGACACT+GGG | + | chr2_1:14107421-14107440 | Msa0196700:CDS | 55.0% | |
| TCCCTGAACCTCAACCGCAT+CGG | - | chr2_1:14107523-14107542 | None:intergenic | 55.0% | |
| !! | GAGGGATTGGATGGTGGGAA+TGG | + | chr2_1:14107729-14107748 | Msa0196700:CDS | 55.0% |
| !! | GGCAAAACTGGCCTTGTGCA+TGG | - | chr2_1:14107879-14107898 | None:intergenic | 55.0% |
| ! | TGCACAAGGCCAGTTTTGCC+TGG | + | chr2_1:14107879-14107898 | Msa0196700:CDS | 55.0% |
| GCCTGGTCAGCATGAAAGAG+AGG | + | chr2_1:14107896-14107915 | Msa0196700:CDS | 55.0% | |
| CCCTCTCTTTCATGCTGACC+AGG | - | chr2_1:14107900-14107919 | None:intergenic | 55.0% | |
| GTGGGAGGATGCCAAAGCAA+AGG | + | chr2_1:14107929-14107948 | Msa0196700:CDS | 55.0% | |
| CAGGATGATGCTGCCCAGAA+TGG | + | chr2_1:14107981-14108000 | Msa0196700:CDS | 55.0% | |
| AACGGAGTCGCCCATGCAAA+TGG | + | chr2_1:14108011-14108030 | Msa0196700:CDS | 55.0% | |
| TGCGAAGAGTGAACTGGGGT+TGG | + | chr2_1:14108392-14108411 | Msa0196700:CDS | 55.0% | |
| GCGAAGAGTGAACTGGGGTT+GGG | + | chr2_1:14108393-14108412 | Msa0196700:CDS | 55.0% | |
| !! | ACAACTCGGTTCGGCTCGTT+AGG | - | chr2_1:14109648-14109667 | None:intergenic | 55.0% |
| GAGCTCAGACAGGTTCGACT+CGG | + | chr2_1:14109765-14109784 | Msa0196700:intron | 55.0% | |
| !! | TGATTGGTGATGCGTACGGC+TGG | - | chr2_1:14109803-14109822 | None:intergenic | 55.0% |
| ! | GTGGCGCGTGGTGCTTGTTT+TGG | - | chr2_1:14105916-14105935 | None:intergenic | 60.0% |
| TGGTGAAAACTCGTGGCGCG+TGG | - | chr2_1:14105928-14105947 | None:intergenic | 60.0% | |
| CATGTTCCCCGATGCGGTTG+AGG | + | chr2_1:14107512-14107531 | Msa0196700:CDS | 60.0% | |
| CCTGAACCTCAACCGCATCG+GGG | - | chr2_1:14107521-14107540 | None:intergenic | 60.0% | |
| CCCTGAACCTCAACCGCATC+GGG | - | chr2_1:14107522-14107541 | None:intergenic | 60.0% | |
| CCCGATGCGGTTGAGGTTCA+GGG | + | chr2_1:14107519-14107538 | Msa0196700:CDS | 60.0% | |
| !! | AGAGGGAAGATGGTGGTGGG+AGG | + | chr2_1:14107914-14107933 | Msa0196700:CDS | 60.0% |
| TGGAGGACCGAAAAGAGCCC+TGG | + | chr2_1:14108114-14108133 | Msa0196700:CDS | 60.0% | |
| !! | ACCATGGTGCCGCTTCTGTC+AGG | + | chr2_1:14108154-14108173 | Msa0196700:CDS | 60.0% |
| ACCTGACAGAAGCGGCACCA+TGG | - | chr2_1:14108158-14108177 | None:intergenic | 60.0% | |
| GCAGGGTCAGGAGTGAAGGT+TGG | + | chr2_1:14108336-14108355 | Msa0196700:CDS | 60.0% | |
| GAGTCGAGTCGAGCTCAGAC+AGG | + | chr2_1:14109755-14109774 | Msa0196700:intron | 60.0% | |
| CCCCGATGCGGTTGAGGTTC+AGG | + | chr2_1:14107518-14107537 | Msa0196700:CDS | 65.0% | |
| GTGGTCAGCTTGAGCAGGGC+TGG | + | chr2_1:14108071-14108090 | Msa0196700:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_1 | gene | 14105906 | 14109933 | 14105906 | ID=Msa0196700;Name=Msa0196700 |
| chr2_1 | mRNA | 14105906 | 14109933 | 14105906 | ID=Msa0196700-mRNA-1;Parent=Msa0196700;Name=Msa0196700-mRNA-1;_AED=0.02;_eAED=0.02;_QI=101|1|1|1|0.8|0.66|6|510|510 |
| chr2_1 | exon | 14105906 | 14106220 | 14105906 | ID=Msa0196700-mRNA-1:exon:6048;Parent=Msa0196700-mRNA-1 |
| chr2_1 | exon | 14106327 | 14106479 | 14106327 | ID=Msa0196700-mRNA-1:exon:6049;Parent=Msa0196700-mRNA-1 |
| chr2_1 | exon | 14106572 | 14106695 | 14106572 | ID=Msa0196700-mRNA-1:exon:6050;Parent=Msa0196700-mRNA-1 |
| chr2_1 | exon | 14107365 | 14108175 | 14107365 | ID=Msa0196700-mRNA-1:exon:6051;Parent=Msa0196700-mRNA-1 |
| chr2_1 | exon | 14108297 | 14108913 | 14108297 | ID=Msa0196700-mRNA-1:exon:6052;Parent=Msa0196700-mRNA-1 |
| chr2_1 | exon | 14109810 | 14109933 | 14109810 | ID=Msa0196700-mRNA-1:exon:6053;Parent=Msa0196700-mRNA-1 |
| chr2_1 | five_prime_UTR | 14105906 | 14106006 | 14105906 | ID=Msa0196700-mRNA-1:five_prime_utr;Parent=Msa0196700-mRNA-1 |
| chr2_1 | CDS | 14106007 | 14106220 | 14106007 | ID=Msa0196700-mRNA-1:cds;Parent=Msa0196700-mRNA-1 |
| chr2_1 | CDS | 14106327 | 14106479 | 14106327 | ID=Msa0196700-mRNA-1:cds;Parent=Msa0196700-mRNA-1 |
| chr2_1 | CDS | 14106572 | 14106695 | 14106572 | ID=Msa0196700-mRNA-1:cds;Parent=Msa0196700-mRNA-1 |
| chr2_1 | CDS | 14107365 | 14108175 | 14107365 | ID=Msa0196700-mRNA-1:cds;Parent=Msa0196700-mRNA-1 |
| chr2_1 | CDS | 14108297 | 14108527 | 14108297 | ID=Msa0196700-mRNA-1:cds;Parent=Msa0196700-mRNA-1 |
| chr2_1 | three_prime_UTR | 14108528 | 14108913 | 14108528 | ID=Msa0196700-mRNA-1:three_prime_utr;Parent=Msa0196700-mRNA-1 |
| chr2_1 | three_prime_UTR | 14109810 | 14109933 | 14109810 | ID=Msa0196700-mRNA-1:three_prime_utr;Parent=Msa0196700-mRNA-1 |
| Gene Sequence |
| Protein sequence |
