Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0238580 | XP_013462840.1 | 97.015 | 469 | 14 | 0 | 42 | 510 | 1 | 469 | 0.0 | 947 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0238580 | sp|P92980|APR3_ARATH | 78.652 | 445 | 78 | 4 | 71 | 510 | 26 | 458 | 0.0 | 722 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0238580 | A0A072V4H5 | 97.015 | 469 | 14 | 0 | 42 | 510 | 1 | 469 | 0.0 | 947 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0196700 | Msa0238580 | 0.958734 | 1.130248e-116 | -8.615850e-47 |
| Msa0196710 | Msa0238580 | 0.980481 | 2.558027e-150 | -8.615850e-47 |
| Msa0238580 | Msa0276150 | 0.990165 | 2.342530e-181 | -8.615850e-47 |
| Msa0238580 | Msa0338780 | 0.867520 | 1.288016e-65 | -8.615850e-47 |
| Msa0238580 | Msa0515350 | 0.801356 | 9.359293e-49 | -8.615850e-47 |
| Msa0238580 | Msa0786970 | 0.829721 | 4.393634e-55 | -8.615850e-47 |
| Msa0238580 | Msa0822380 | 0.836822 | 7.471378e-57 | -8.615850e-47 |
| Msa0238580 | Msa1084630 | 0.838985 | 2.076298e-57 | -8.615850e-47 |
| Msa0238580 | Msa1204260 | 0.804360 | 2.242828e-49 | -8.615850e-47 |
| Msa0238580 | Msa1400330 | 0.837909 | 3.935927e-57 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0238580 | MtrunA17_Chr2g0288581 | 97.015 | 469 | 14 | 0 | 42 | 510 | 1 | 469 | 0.0 | 947 |
| Msa0238580 | MtrunA17_Chr1g0189051 | 78.667 | 75 | 16 | 0 | 435 | 509 | 2 | 76 | 3.78e-31 | 115 |
| Msa0238580 | MtrunA17_Chr3g0079881 | 80.000 | 70 | 14 | 0 | 441 | 510 | 13 | 82 | 1.07e-29 | 111 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0238580 | AT4G21990.1 | 78.652 | 445 | 78 | 4 | 71 | 510 | 26 | 458 | 0.0 | 722 |
| Msa0238580 | AT4G04610.1 | 76.703 | 455 | 91 | 5 | 63 | 510 | 19 | 465 | 0.0 | 704 |
| Msa0238580 | AT1G62180.2 | 73.191 | 470 | 102 | 5 | 42 | 510 | 1 | 447 | 0.0 | 692 |
| Msa0238580 | AT1G62180.1 | 73.305 | 472 | 105 | 5 | 42 | 510 | 1 | 454 | 0.0 | 685 |
| Msa0238580 | AT4G21990.2 | 81.818 | 286 | 40 | 3 | 71 | 351 | 61 | 339 | 3.71e-168 | 479 |
Find 163 sgRNAs with CRISPR-Local
Find 231 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGGCATTTATTAATGCTTTA+AGG | 0.124902 | 2_2:+12318028 | Msa0238580:CDS |
| AGTTGTTTATTCACTGATTT+TGG | 0.132856 | 2_2:+12318104 | Msa0238580:three_prime_UTR |
| AATTGGTTCGTTAAGAATTT+TGG | 0.144905 | 2_2:+12315821 | Msa0238580:CDS |
| TCAAACAATCTGTATGTTTC+TGG | 0.150664 | 2_2:-12316949 | None:intergenic |
| CTCCGTTTCCATTACCATTC+TGG | 0.158439 | 2_2:-12317491 | None:intergenic |
| ATGATATTGCTATTGCTTTC+AGG | 0.175353 | 2_2:+12316171 | Msa0238580:CDS |
| CCCTTAAGAGCTCTTCTTAA+AGG | 0.194775 | 2_2:-12317114 | None:intergenic |
| TGCTCAAGCTGACCACATTC+TGG | 0.202249 | 2_2:-12317560 | None:intergenic |
| CCCCGATGCGGTTGAGGTTC+AGG | 0.235666 | 2_2:+12317014 | Msa0238580:CDS |
| ACGTTTGTGTTCTGTGTTTC+AGG | 0.240697 | 2_2:-12318514 | None:intergenic |
| GACAAGGCTCTTGAGAAATT+TGG | 0.259730 | 2_2:+12316146 | Msa0238580:CDS |
| AATTGAGAATCTAGCTAAAT+TGG | 0.278779 | 2_2:+12317590 | Msa0238580:CDS |
| TTTACCTCAAAGACGTTCTT+TGG | 0.283907 | 2_2:+12315872 | Msa0238580:CDS |
| CTTATGTGGCTTGAGGTAAT+TGG | 0.288137 | 2_2:-12315436 | None:intergenic |
| ATTTGACGGGTAGGCCATTC+AGG | 0.289307 | 2_2:+12316896 | Msa0238580:CDS |
| TCATGCTGACCAGGCAAAAC+TGG | 0.308335 | 2_2:-12317384 | None:intergenic |
| ATCAAGAGTGCTGCAGAATA+AGG | 0.321572 | 2_2:+12317082 | Msa0238580:CDS |
| TGCTTCACCTCTTGAAATAA+TGG | 0.322572 | 2_2:+12316124 | Msa0238580:CDS |
| GTCTGAAGTACCCGTTGTTC+AGG | 0.324589 | 2_2:+12317188 | Msa0238580:CDS |
| ACCTTTAAGAAGAGCTCTTA+AGG | 0.331966 | 2_2:+12317113 | Msa0238580:CDS |
| GGAGGAATCATATGTTGATT+TGG | 0.337432 | 2_2:+12317828 | Msa0238580:CDS |
| GATATTCGTACATGAAAGTT+TGG | 0.350129 | 2_2:-12318339 | None:intergenic |
| ATCGGCCGAGAAGAGTGTTT+AGG | 0.350482 | 2_2:-12317967 | None:intergenic |
| GAGAGACGTTGATTCATTAC+TGG | 0.351200 | 2_2:+12318008 | Msa0238580:CDS |
| TCGGCCGAGAAGAGTGTTTA+GGG | 0.355914 | 2_2:-12317966 | None:intergenic |
| CCCTGAACCTCAACCGCATC+GGG | 0.366041 | 2_2:-12317015 | None:intergenic |
| CCCGATGCGGTTGAGGTTCA+GGG | 0.369744 | 2_2:+12317015 | Msa0238580:CDS |
| TGTAGAACATCTCTCTGTAT+AGG | 0.374816 | 2_2:+12318183 | Msa0238580:three_prime_UTR |
| GGTTTGAGAGCATGGATAAC+TGG | 0.378025 | 2_2:+12317135 | Msa0238580:CDS |
| TCTTCCCTAAACACTCTTCT+CGG | 0.378246 | 2_2:+12317962 | Msa0238580:CDS |
| GCCATTCAGGGTGTTCAGTC+TGG | 0.379663 | 2_2:+12316909 | Msa0238580:CDS |
| GTGGCGCGTGGTGCTTGTTT+TGG | 0.379706 | 2_2:-12315400 | None:intergenic |
| CCCTCTCTTTCATGCTGACC+AGG | 0.381378 | 2_2:-12317393 | None:intergenic |
| TCACAAAGGTAATTTGAAAC+AGG | 0.394072 | 2_2:+12317458 | Msa0238580:CDS |
| TGCATAGAGCACAACGATCC+AGG | 0.397198 | 2_2:-12317628 | None:intergenic |
| TCCGTTTCCATTACCATTCT+GGG | 0.399151 | 2_2:-12317490 | None:intergenic |
| TGTGAATGCAATGCATTAAC+AGG | 0.400904 | 2_2:-12317324 | None:intergenic |
| TTACAAATTAATAGAGTTTG+TGG | 0.404763 | 2_2:+12318544 | Msa0238580:three_prime_UTR |
| GCAGAGAATTTAGCAGGGTC+AGG | 0.405699 | 2_2:+12317850 | Msa0238580:CDS |
| GAAGTAACGGCGAGAGCCAT+TGG | 0.407635 | 2_2:-12315614 | None:intergenic |
| GAATGTGGGAATGACAGTTT+TGG | 0.409739 | 2_2:+12318137 | Msa0238580:three_prime_UTR |
| TTGGAGAGAAATGTTTCATC+TGG | 0.411070 | 2_2:+12315840 | Msa0238580:CDS |
| AAGACCACACTCCTTTGCTT+TGG | 0.412645 | 2_2:-12317436 | None:intergenic |
| GCTCAAGCTGACCACATTCT+GGG | 0.413593 | 2_2:-12317559 | None:intergenic |
| TTACCCTTCACATTTGCAAC+CGG | 0.414227 | 2_2:-12317267 | None:intergenic |
| CCTTTAAGAAGAGCTCTTAA+GGG | 0.416945 | 2_2:+12317114 | Msa0238580:CDS |
| AATTGAATACGCACATTTGA+CGG | 0.418233 | 2_2:+12316882 | Msa0238580:CDS |
| GTGGTCAGCTTGAGCAGGGC+TGG | 0.421089 | 2_2:+12317567 | Msa0238580:CDS |
| AGAATATGCGAAGAGTGAAC+TGG | 0.421115 | 2_2:+12317912 | Msa0238580:CDS |
| ATTGAACCTAGACGTGATTA+CGG | 0.426023 | 2_2:-12315473 | None:intergenic |
| CTCTTAAGGGTTTGAGAGCA+TGG | 0.434805 | 2_2:+12317127 | Msa0238580:CDS |
| TTCACCAAAGAACGTCTTTG+AGG | 0.443814 | 2_2:-12315876 | None:intergenic |
| AAGATCAGTCGCCTGGTACT+AGG | 0.444407 | 2_2:+12317166 | Msa0238580:CDS |
| ACAGGATCAACCTGAACAAC+GGG | 0.450053 | 2_2:-12317198 | None:intergenic |
| TGCGAAGAGTGAACTGGGGT+TGG | 0.451563 | 2_2:+12317918 | Msa0238580:CDS |
| GATTTGGCAGAGAATTTAGC+AGG | 0.459112 | 2_2:+12317844 | Msa0238580:CDS |
| AAAGAGAGGGAAGATGGTGG+TGG | 0.469201 | 2_2:+12317406 | Msa0238580:CDS |
| GCGAAGAGTGAACTGGGGTT+GGG | 0.470355 | 2_2:+12317919 | Msa0238580:CDS |
| ATGTGAAGGGTAATGACATA+TGG | 0.471063 | 2_2:+12317277 | Msa0238580:CDS |
| ACCATGGTGCCGCTTCTGTC+AGG | 0.471836 | 2_2:+12317650 | Msa0238580:CDS |
| AGAATGTGGTCAGCTTGAGC+AGG | 0.476294 | 2_2:+12317562 | Msa0238580:CDS |
| AGAGATTATTGAGAAGGAAG+AGG | 0.479071 | 2_2:+12316067 | Msa0238580:intron |
| GAGGGATTGGATGGTGGGAA+TGG | 0.483411 | 2_2:+12317225 | Msa0238580:CDS |
| TTTCTAGATGAGTAGAGGTA+TGG | 0.485095 | 2_2:+12318270 | Msa0238580:three_prime_UTR |
| TTTAGGGAAGAAGAGTATTG+TGG | 0.485147 | 2_2:-12317950 | None:intergenic |
| TTTAGCAGGGTCAGGAGTGA+AGG | 0.486632 | 2_2:+12317858 | Msa0238580:CDS |
| ATGACATATGGACCTTCCTT+AGG | 0.487981 | 2_2:+12317289 | Msa0238580:CDS |
| TTAGGGAAGAAGAGTATTGT+GGG | 0.489577 | 2_2:-12317949 | None:intergenic |
| CAGGGATTAGTAAGAACAAA+GGG | 0.496123 | 2_2:+12317033 | Msa0238580:CDS |
| TCCAGACTGAACACCCTGAA+TGG | 0.499274 | 2_2:-12316910 | None:intergenic |
| CATGTTCCCCGATGCGGTTG+AGG | 0.501238 | 2_2:+12317008 | Msa0238580:CDS |
| TTCAGGTTCAAATTTCGTGA+TGG | 0.503048 | 2_2:-12318497 | None:intergenic |
| TCAGGTTCAAATTTCGTGAT+GGG | 0.503390 | 2_2:-12318496 | None:intergenic |
| TTACTTCATTCATTCTCCAA+TGG | 0.503658 | 2_2:+12315598 | Msa0238580:CDS |
| GTTGGAAAATTTAGAGCGGA+TGG | 0.504381 | 2_2:+12317880 | Msa0238580:CDS |
| AAATGTTTGTGATGCTTATG+TGG | 0.504614 | 2_2:-12315450 | None:intergenic |
| AAGAGAGGGAAGATGGTGGT+GGG | 0.506965 | 2_2:+12317407 | Msa0238580:CDS |
| ATTTGCAGAGATTATTGAGA+AGG | 0.507607 | 2_2:+12316061 | Msa0238580:intron |
| CAACCGGGTTCCACTTAACA+AGG | 0.507691 | 2_2:-12317251 | None:intergenic |
| TCACAAGGATACGTTTCCAT+TGG | 0.510148 | 2_2:+12317342 | Msa0238580:CDS |
| TGGAGGACCGAAAAGAGCCC+TGG | 0.510799 | 2_2:+12317610 | Msa0238580:CDS |
| AATTCCTTCTTCTCTCGTAT+CGG | 0.517956 | 2_2:+12315665 | Msa0238580:CDS |
| TTTGACGGGTAGGCCATTCA+GGG | 0.520433 | 2_2:+12316897 | Msa0238580:CDS |
| AGAGGGAAGATGGTGGTGGG+AGG | 0.521000 | 2_2:+12317410 | Msa0238580:CDS |
| TCCCTGAACCTCAACCGCAT+CGG | 0.522772 | 2_2:-12317016 | None:intergenic |
| AGCATGAAAGAGAGGGAAGA+TGG | 0.523785 | 2_2:+12317400 | Msa0238580:CDS |
| GGTGATATTTGATACGTGAT+TGG | 0.524738 | 2_2:-12318446 | None:intergenic |
| ATGAAATGAATGAAAAGAAG+AGG | 0.524879 | 2_2:-12315539 | None:intergenic |
| GCCTTGTCCATTATTTCAAG+AGG | 0.527964 | 2_2:-12316131 | None:intergenic |
| GCCCAGAATGGTAATGGAAA+CGG | 0.529855 | 2_2:+12317489 | Msa0238580:CDS |
| GGGTGATGCGAGGAATTTGA+AGG | 0.532368 | 2_2:-12315499 | None:intergenic |
| ATTGAATACGCACATTTGAC+GGG | 0.532538 | 2_2:+12316883 | Msa0238580:CDS |
| TACCCTTCACATTTGCAACC+GGG | 0.532628 | 2_2:-12317266 | None:intergenic |
| GGGTGTTCAGTCTGGACACT+GGG | 0.534085 | 2_2:+12316917 | Msa0238580:CDS |
| GCAGGGTCAGGAGTGAAGGT+TGG | 0.536117 | 2_2:+12317862 | Msa0238580:CDS |
| GATGCTGCCCAGAATGGTAA+TGG | 0.542560 | 2_2:+12317483 | Msa0238580:CDS |
| TTTGGCACTTCACTCGAATG+TGG | 0.545376 | 2_2:+12318122 | Msa0238580:three_prime_UTR |
| AAGGTTCCATCACACAATAC+TGG | 0.546306 | 2_2:+12318076 | Msa0238580:three_prime_UTR |
| AGATCCGATACGAGAGAAGA+AGG | 0.548526 | 2_2:-12315669 | None:intergenic |
| TGAGAATCTAGCTAAATTGG+AGG | 0.548731 | 2_2:+12317593 | Msa0238580:CDS |
| TCAAAGACGTTCTTTGGTGA+AGG | 0.549369 | 2_2:+12315878 | Msa0238580:CDS |
| GGCAAAACTGGCCTTGTGCA+TGG | 0.554255 | 2_2:-12317372 | None:intergenic |
| ATTGCAAATTGTCGAGCTTG+TGG | 0.555905 | 2_2:-12318399 | None:intergenic |
| GATGCAGTTGAGAAGCGCTA+TGG | 0.556616 | 2_2:+12316970 | Msa0238580:CDS |
| TAAATTCTTACAGGCTATGG+AGG | 0.556676 | 2_2:+12317810 | Msa0238580:intron |
| TCAATTGAGTAATTTGCTCA+AGG | 0.556802 | 2_2:+12318057 | Msa0238580:three_prime_UTR |
| GAATATGCGAAGAGTGAACT+GGG | 0.557115 | 2_2:+12317913 | Msa0238580:CDS |
| GATTATTGAGAAGGAAGAGG+AGG | 0.560807 | 2_2:+12316070 | Msa0238580:CDS |
| TGTGCATGGTTCACAACCAA+TGG | 0.562874 | 2_2:-12317358 | None:intergenic |
| AGGGTGTTCAGTCTGGACAC+TGG | 0.563748 | 2_2:+12316916 | Msa0238580:CDS |
| TTGGCACTTCACTCGAATGT+GGG | 0.566178 | 2_2:+12318123 | Msa0238580:three_prime_UTR |
| CAGAGAAAAGATCAGTCGCC+TGG | 0.567745 | 2_2:+12317159 | Msa0238580:CDS |
| CAGGATGATGCTGCCCAGAA+TGG | 0.569226 | 2_2:+12317477 | Msa0238580:CDS |
| GGAATGGTAGCCTTGTTAAG+TGG | 0.569264 | 2_2:+12317241 | Msa0238580:CDS |
| TTTGTGACTTGATACGTGAT+AGG | 0.569444 | 2_2:-12318467 | None:intergenic |
| TGTGATGCTTATGTGGCTTG+AGG | 0.570573 | 2_2:-12315443 | None:intergenic |
| ACATTTCCGTAATCACGTCT+AGG | 0.572718 | 2_2:+12315467 | Msa0238580:five_prime_UTR |
| GCCTGGTCAGCATGAAAGAG+AGG | 0.586042 | 2_2:+12317392 | Msa0238580:CDS |
| CAGGCACATCCATTGTCCTA+AGG | 0.586597 | 2_2:-12317305 | None:intergenic |
| TAGGGAAGAAGAGTATTGTG+GGG | 0.586899 | 2_2:-12317948 | None:intergenic |
| GTGATGCGTAACGAGTTTAG+TGG | 0.588170 | 2_2:-12318424 | None:intergenic |
| CACATCCATTGTCCTAAGGA+AGG | 0.591182 | 2_2:-12317301 | None:intergenic |
| AGTTGCAGAGACATTTGCAT+GGG | 0.605204 | 2_2:-12317517 | None:intergenic |
| AATACGCACATTTGACGGGT+AGG | 0.605422 | 2_2:+12316887 | Msa0238580:CDS |
| AACAGGATCAACCTGAACAA+CGG | 0.605769 | 2_2:-12317199 | None:intergenic |
| GCATAGAGCACAACGATCCA+GGG | 0.606299 | 2_2:-12317627 | None:intergenic |
| ACCTCTTGAAATAATGGACA+AGG | 0.608971 | 2_2:+12316130 | Msa0238580:CDS |
| GAATGTGGTCAGCTTGAGCA+GGG | 0.611848 | 2_2:+12317563 | Msa0238580:CDS |
| ATAAAGAGAAGGGTGATGCG+AGG | 0.613810 | 2_2:-12315509 | None:intergenic |
| CTATTAACGCTGAATCGCAA+AGG | 0.614292 | 2_2:+12315901 | Msa0238580:CDS |
| GGTACTTCAGACCTAGTACC+AGG | 0.615263 | 2_2:-12317177 | None:intergenic |
| ATGGACCTTCCTTAGGACAA+TGG | 0.618027 | 2_2:+12317296 | Msa0238580:CDS |
| AACTGATGAAGAAGAAGTAA+CGG | 0.620447 | 2_2:-12315627 | None:intergenic |
| GAACCCGGTTGCAAATGTGA+AGG | 0.621902 | 2_2:+12317263 | Msa0238580:CDS |
| GTGGGAGGATGCCAAAGCAA+AGG | 0.625285 | 2_2:+12317425 | Msa0238580:CDS |
| TAGCCTTGTTAAGTGGAACC+CGG | 0.629187 | 2_2:+12317248 | Msa0238580:CDS |
| TGAATACATGTTCCCCGATG+CGG | 0.631138 | 2_2:+12317002 | Msa0238580:CDS |
| GGATCTTCGTCTGAATCCAA+AGG | 0.631891 | 2_2:+12315686 | Msa0238580:CDS |
| CAGTTGCAGAGACATTTGCA+TGG | 0.635344 | 2_2:-12317518 | None:intergenic |
| TCAGGGATTAGTAAGAACAA+AGG | 0.636754 | 2_2:+12317032 | Msa0238580:CDS |
| CCTGGTCAGCATGAAAGAGA+GGG | 0.640837 | 2_2:+12317393 | Msa0238580:CDS |
| AGAGTGCTGCAGAATAAGGA+AGG | 0.642123 | 2_2:+12317086 | Msa0238580:CDS |
| GCAACGATAGTTGCTGCAAG+AGG | 0.642926 | 2_2:-12315939 | None:intergenic |
| GAAGGTTGGAAAATTTAGAG+CGG | 0.647488 | 2_2:+12317876 | Msa0238580:CDS |
| GTTAATGCATTGCATTCACA+AGG | 0.647862 | 2_2:+12317327 | Msa0238580:CDS |
| TTATTGCCAGTATTGTGTGA+TGG | 0.647994 | 2_2:-12318082 | None:intergenic |
| AATTGGATGGTGAAAACTCG+TGG | 0.650741 | 2_2:-12315419 | None:intergenic |
| AAGGAGTGTGGTCTTCACAA+AGG | 0.651490 | 2_2:+12317444 | Msa0238580:CDS |
| GATGCCAAAGCAAAGGAGTG+TGG | 0.656499 | 2_2:+12317432 | Msa0238580:CDS |
| TTGGTTGTGAACCATGCACA+AGG | 0.657587 | 2_2:+12317361 | Msa0238580:CDS |
| AACCCGGTTGCAAATGTGAA+GGG | 0.659605 | 2_2:+12317264 | Msa0238580:CDS |
| TGGTGAAAACTCGTGGCGCG+TGG | 0.662859 | 2_2:-12315412 | None:intergenic |
| GCAGCAACTATCGTTGCACC+TGG | 0.665317 | 2_2:+12315945 | Msa0238580:CDS |
| TGTGGCTTGAGGTAATTGGA+TGG | 0.680666 | 2_2:-12315432 | None:intergenic |
| ACCTGACAGAAGCGGCACCA+TGG | 0.685537 | 2_2:-12317651 | None:intergenic |
| ATGAAAGAGAGGGAAGATGG+TGG | 0.685564 | 2_2:+12317403 | Msa0238580:CDS |
| ATTTGGCAGAGAATTTAGCA+GGG | 0.695699 | 2_2:+12317845 | Msa0238580:CDS |
| AAACACAGAACACAAACGTG+CGG | 0.711281 | 2_2:+12318518 | Msa0238580:three_prime_UTR |
| CGGGGAACATGTATTCAATG+CGG | 0.729164 | 2_2:-12316996 | None:intergenic |
| TCGTTGTGCTCTATGCACCA+TGG | 0.730304 | 2_2:+12317634 | Msa0238580:CDS |
| CCTGAACCTCAACCGCATCG+GGG | 0.743554 | 2_2:-12317014 | None:intergenic |
| AGGGATTAGTAAGAACAAAG+GGG | 0.746501 | 2_2:+12317034 | Msa0238580:CDS |
| AATATGCGAAGAGTGAACTG+GGG | 0.792612 | 2_2:+12317914 | Msa0238580:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTATTGAAGAAATTTTTA+TGG | + | chr2_2:12315977-12315996 | Msa0238580:intron | 10.0% |
| !!! | ATCAAATTTTTTATGAAAGT+AGG | - | chr2_2:12316649-12316668 | None:intergenic | 15.0% |
| !!! | TATTTGTTTATGGTTTTGTT+GGG | + | chr2_2:12316239-12316258 | Msa0238580:intron | 20.0% |
| !! | GAATAGAGAATAGTATAATT+TGG | + | chr2_2:12316393-12316412 | Msa0238580:intron | 20.0% |
| !!! | AATAGTATAATTTGGCTTTA+TGG | + | chr2_2:12316401-12316420 | Msa0238580:intron | 20.0% |
| !! | TGTTTAATCTAAATTCTTAC+AGG | + | chr2_2:12317801-12317820 | Msa0238580:intron | 20.0% |
| !!! | TAATTGTAATAGTCATTTTG+AGG | + | chr2_2:12318228-12318247 | Msa0238580:three_prime_UTR | 20.0% |
| !!! | AGGTTTTGATATAAAGAGAA+GGG | - | chr2_2:12315522-12315541 | None:intergenic | 25.0% |
| ! | ATGAAATGAATGAAAAGAAG+AGG | - | chr2_2:12315542-12315561 | None:intergenic | 25.0% |
| ! | TGATAAATTATTGCTACCTT+TGG | - | chr2_2:12315705-12315724 | None:intergenic | 25.0% |
| !!! | AACGAAATTCGTTGATTTTA+GGG | + | chr2_2:12315751-12315770 | Msa0238580:intron | 25.0% |
| !!! | AATTGGTTCGTTAAGAATTT+TGG | + | chr2_2:12315821-12315840 | Msa0238580:CDS | 25.0% |
| ! | TCAATAATAAAAAACGTACC+AGG | - | chr2_2:12315966-12315985 | None:intergenic | 25.0% |
| ! | TGTTGTGTAGTATTTGTTTA+TGG | + | chr2_2:12316229-12316248 | Msa0238580:intron | 25.0% |
| !!! | GTATTTGTTTATGGTTTTGT+TGG | + | chr2_2:12316238-12316257 | Msa0238580:intron | 25.0% |
| !!! | AGGTTGATTTGATTATTCTT+AGG | + | chr2_2:12316287-12316306 | Msa0238580:intron | 25.0% |
| !! | TTGATTTGATTATTCTTAGG+AGG | + | chr2_2:12316290-12316309 | Msa0238580:intron | 25.0% |
| !! | TAGCATTTTTGTAACTGTTT+AGG | + | chr2_2:12316432-12316451 | Msa0238580:intron | 25.0% |
| ! | TTTAGGAAAGTTTACAAAAC+AGG | + | chr2_2:12316449-12316468 | Msa0238580:intron | 25.0% |
| ! | TTAGGAAAGTTTACAAAACA+GGG | + | chr2_2:12316450-12316469 | Msa0238580:intron | 25.0% |
| ! | ACAAAACAGGGAATAATTTA+CGG | + | chr2_2:12316462-12316481 | Msa0238580:intron | 25.0% |
| !! | TAAGCAAAGATTACATTTTG+AGG | + | chr2_2:12316524-12316543 | Msa0238580:intron | 25.0% |
| ! | TGCTTATAATAGTAACATGA+TGG | + | chr2_2:12316594-12316613 | Msa0238580:intron | 25.0% |
| ! | GCTTATAATAGTAACATGAT+GGG | + | chr2_2:12316595-12316614 | Msa0238580:intron | 25.0% |
| ! | CTTATAATAGTAACATGATG+GGG | + | chr2_2:12316596-12316615 | Msa0238580:intron | 25.0% |
| !!! | GAAAGTAGGTTTTTTTTTAC+TGG | - | chr2_2:12316635-12316654 | None:intergenic | 25.0% |
| ! | AGCTTATAACAAACAATAGT+TGG | - | chr2_2:12316673-12316692 | None:intergenic | 25.0% |
| !!! | ACTCTAAAGTTCTCTTTAAT+TGG | + | chr2_2:12316773-12316792 | Msa0238580:intron | 25.0% |
| ! | TAAAGTTCTCTTTAATTGGT+GGG | + | chr2_2:12316777-12316796 | Msa0238580:intron | 25.0% |
| !!! | AGTATTTTTGTTATTGCAGT+GGG | + | chr2_2:12316842-12316861 | Msa0238580:intron | 25.0% |
| ! | AATTGAGAATCTAGCTAAAT+TGG | + | chr2_2:12317590-12317609 | Msa0238580:CDS | 25.0% |
| !!! | TTTTCTGAAGGATACTTAAT+CGG | - | chr2_2:12317988-12318007 | None:intergenic | 25.0% |
| ! | TGGCATTTATTAATGCTTTA+AGG | + | chr2_2:12318028-12318047 | Msa0238580:CDS | 25.0% |
| !!! | AGTTGTTTATTCACTGATTT+TGG | + | chr2_2:12318104-12318123 | Msa0238580:three_prime_UTR | 25.0% |
| AAATGTTTGTGATGCTTATG+TGG | - | chr2_2:12315453-12315472 | None:intergenic | 30.0% | |
| !! | GAGGTTTTGATATAAAGAGA+AGG | - | chr2_2:12315523-12315542 | None:intergenic | 30.0% |
| TTACTTCATTCATTCTCCAA+TGG | + | chr2_2:12315598-12315617 | Msa0238580:CDS | 30.0% | |
| AACTGATGAAGAAGAAGTAA+CGG | - | chr2_2:12315630-12315649 | None:intergenic | 30.0% | |
| !!! | GAACGAAATTCGTTGATTTT+AGG | + | chr2_2:12315750-12315769 | Msa0238580:intron | 30.0% |
| ATTTGCAGAGATTATTGAGA+AGG | + | chr2_2:12316061-12316080 | Msa0238580:intron | 30.0% | |
| ! | ATGATATTGCTATTGCTTTC+AGG | + | chr2_2:12316171-12316190 | Msa0238580:CDS | 30.0% |
| !! | GATCGATTTTGTATTTCACT+CGG | - | chr2_2:12316355-12316374 | None:intergenic | 30.0% |
| !! | ATAATTTGGCTTTATGGTGT+AGG | + | chr2_2:12316407-12316426 | Msa0238580:intron | 30.0% |
| TTTGCTTATAATAGTGATCG+CGG | - | chr2_2:12316512-12316531 | None:intergenic | 30.0% | |
| CTAAAGTTCTCTTTAATTGG+TGG | + | chr2_2:12316776-12316795 | Msa0238580:intron | 30.0% | |
| !!! | GAGTATTTTTGTTATTGCAG+TGG | + | chr2_2:12316841-12316860 | Msa0238580:intron | 30.0% |
| !!! | GTATTTTTGTTATTGCAGTG+GGG | + | chr2_2:12316843-12316862 | Msa0238580:intron | 30.0% |
| AATTGAATACGCACATTTGA+CGG | + | chr2_2:12316882-12316901 | Msa0238580:CDS | 30.0% | |
| TCAAACAATCTGTATGTTTC+TGG | - | chr2_2:12316952-12316971 | None:intergenic | 30.0% | |
| ! | TCTTCTCATTTTATGAGGAT+GGG | + | chr2_2:12317058-12317077 | Msa0238580:CDS | 30.0% |
| ! | TCACAAAGGTAATTTGAAAC+AGG | + | chr2_2:12317458-12317477 | Msa0238580:CDS | 30.0% |
| TCATGCAATATAGAAAGTTC+AGG | - | chr2_2:12317688-12317707 | None:intergenic | 30.0% | |
| TAAAATAATGCACCTTCAGT+AGG | - | chr2_2:12317754-12317773 | None:intergenic | 30.0% | |
| ATCTAAATTCTTACAGGCTA+TGG | + | chr2_2:12317807-12317826 | Msa0238580:intron | 30.0% | |
| !! | TCAATTGAGTAATTTGCTCA+AGG | + | chr2_2:12318057-12318076 | Msa0238580:three_prime_UTR | 30.0% |
| !! | TTGTAATAGTCATTTTGAGG+TGG | + | chr2_2:12318231-12318250 | Msa0238580:three_prime_UTR | 30.0% |
| !!! | TGTAATAGTCATTTTGAGGT+GGG | + | chr2_2:12318232-12318251 | Msa0238580:three_prime_UTR | 30.0% |
| GATATTCGTACATGAAAGTT+TGG | - | chr2_2:12318342-12318361 | None:intergenic | 30.0% | |
| ATTGAACCTAGACGTGATTA+CGG | - | chr2_2:12315476-12315495 | None:intergenic | 35.0% | |
| AATTCCTTCTTCTCTCGTAT+CGG | + | chr2_2:12315665-12315684 | Msa0238580:CDS | 35.0% | |
| ! | GTGTTTTCAGTTTCGCAAAT+TGG | + | chr2_2:12315804-12315823 | Msa0238580:intron | 35.0% |
| TTGGAGAGAAATGTTTCATC+TGG | + | chr2_2:12315840-12315859 | Msa0238580:CDS | 35.0% | |
| TTTACCTCAAAGACGTTCTT+TGG | + | chr2_2:12315872-12315891 | Msa0238580:CDS | 35.0% | |
| AGAGATTATTGAGAAGGAAG+AGG | + | chr2_2:12316067-12316086 | Msa0238580:intron | 35.0% | |
| TGCTTCACCTCTTGAAATAA+TGG | + | chr2_2:12316124-12316143 | Msa0238580:CDS | 35.0% | |
| !! | ACCTCTTGAAATAATGGACA+AGG | + | chr2_2:12316130-12316149 | Msa0238580:CDS | 35.0% |
| ATTCGTCAATCTACAATCTC+TGG | - | chr2_2:12316377-12316396 | None:intergenic | 35.0% | |
| TTGCTTATAATAGTGATCGC+GGG | - | chr2_2:12316511-12316530 | None:intergenic | 35.0% | |
| AGTAGCGTAACTTATACACA+TGG | + | chr2_2:12316699-12316718 | Msa0238580:intron | 35.0% | |
| GTAGCGTAACTTATACACAT+GGG | + | chr2_2:12316700-12316719 | Msa0238580:intron | 35.0% | |
| ATTGAATACGCACATTTGAC+GGG | + | chr2_2:12316883-12316902 | Msa0238580:CDS | 35.0% | |
| ! | TCAGGGATTAGTAAGAACAA+AGG | + | chr2_2:12317032-12317051 | Msa0238580:CDS | 35.0% |
| ! | CAGGGATTAGTAAGAACAAA+GGG | + | chr2_2:12317033-12317052 | Msa0238580:CDS | 35.0% |
| ! | AGGGATTAGTAAGAACAAAG+GGG | + | chr2_2:12317034-12317053 | Msa0238580:CDS | 35.0% |
| ! | CTCTTCTCATTTTATGAGGA+TGG | + | chr2_2:12317057-12317076 | Msa0238580:CDS | 35.0% |
| ! | ACCTTTAAGAAGAGCTCTTA+AGG | + | chr2_2:12317113-12317132 | Msa0238580:CDS | 35.0% |
| ! | CCTTTAAGAAGAGCTCTTAA+GGG | + | chr2_2:12317114-12317133 | Msa0238580:CDS | 35.0% |
| ATGTGAAGGGTAATGACATA+TGG | + | chr2_2:12317277-12317296 | Msa0238580:CDS | 35.0% | |
| TGTGAATGCAATGCATTAAC+AGG | - | chr2_2:12317327-12317346 | None:intergenic | 35.0% | |
| GTTAATGCATTGCATTCACA+AGG | + | chr2_2:12317327-12317346 | Msa0238580:CDS | 35.0% | |
| ! | TATTTTCAACACCCAGAATG+TGG | + | chr2_2:12317548-12317567 | Msa0238580:CDS | 35.0% |
| TGAGAATCTAGCTAAATTGG+AGG | + | chr2_2:12317593-12317612 | Msa0238580:CDS | 35.0% | |
| ! | ATCATTTTACCTGACAGAAG+CGG | - | chr2_2:12317662-12317681 | None:intergenic | 35.0% |
| TAAATTCTTACAGGCTATGG+AGG | + | chr2_2:12317810-12317829 | Msa0238580:intron | 35.0% | |
| ! | GGAGGAATCATATGTTGATT+TGG | + | chr2_2:12317828-12317847 | Msa0238580:CDS | 35.0% |
| ATTTGGCAGAGAATTTAGCA+GGG | + | chr2_2:12317845-12317864 | Msa0238580:CDS | 35.0% | |
| GAAGGTTGGAAAATTTAGAG+CGG | + | chr2_2:12317876-12317895 | Msa0238580:CDS | 35.0% | |
| !! | TTAGGGAAGAAGAGTATTGT+GGG | - | chr2_2:12317952-12317971 | None:intergenic | 35.0% |
| !! | TTTAGGGAAGAAGAGTATTG+TGG | - | chr2_2:12317953-12317972 | None:intergenic | 35.0% |
| TTATTGCCAGTATTGTGTGA+TGG | - | chr2_2:12318085-12318104 | None:intergenic | 35.0% | |
| TGTAGAACATCTCTCTGTAT+AGG | + | chr2_2:12318183-12318202 | Msa0238580:three_prime_UTR | 35.0% | |
| !!! | GTAATAGTCATTTTGAGGTG+GGG | + | chr2_2:12318233-12318252 | Msa0238580:three_prime_UTR | 35.0% |
| !! | CTGTTTTTCTAGATGAGTAG+AGG | + | chr2_2:12318265-12318284 | Msa0238580:three_prime_UTR | 35.0% |
| TTTCTAGATGAGTAGAGGTA+TGG | + | chr2_2:12318270-12318289 | Msa0238580:three_prime_UTR | 35.0% | |
| GGTGATATTTGATACGTGAT+TGG | - | chr2_2:12318449-12318468 | None:intergenic | 35.0% | |
| TTTGTGACTTGATACGTGAT+AGG | - | chr2_2:12318470-12318489 | None:intergenic | 35.0% | |
| TCAGGTTCAAATTTCGTGAT+GGG | - | chr2_2:12318499-12318518 | None:intergenic | 35.0% | |
| ! | TTCAGGTTCAAATTTCGTGA+TGG | - | chr2_2:12318500-12318519 | None:intergenic | 35.0% |
| AATTGGATGGTGAAAACTCG+TGG | - | chr2_2:12315422-12315441 | None:intergenic | 40.0% | |
| CTTATGTGGCTTGAGGTAAT+TGG | - | chr2_2:12315439-12315458 | None:intergenic | 40.0% | |
| ACATTTCCGTAATCACGTCT+AGG | + | chr2_2:12315467-12315486 | Msa0238580:five_prime_UTR | 40.0% | |
| TTCACCAAAGAACGTCTTTG+AGG | - | chr2_2:12315879-12315898 | None:intergenic | 40.0% | |
| TCAAAGACGTTCTTTGGTGA+AGG | + | chr2_2:12315878-12315897 | Msa0238580:CDS | 40.0% | |
| CTATTAACGCTGAATCGCAA+AGG | + | chr2_2:12315901-12315920 | Msa0238580:CDS | 40.0% | |
| GATTATTGAGAAGGAAGAGG+AGG | + | chr2_2:12316070-12316089 | Msa0238580:CDS | 40.0% | |
| !! | CAAGAGGTGAAGCATTTTCA+AGG | - | chr2_2:12316118-12316137 | None:intergenic | 40.0% |
| GCCTTGTCCATTATTTCAAG+AGG | - | chr2_2:12316134-12316153 | None:intergenic | 40.0% | |
| GACAAGGCTCTTGAGAAATT+TGG | + | chr2_2:12316146-12316165 | Msa0238580:CDS | 40.0% | |
| TTGATCAAGTGAGTGGTTTC+AGG | + | chr2_2:12316267-12316286 | Msa0238580:intron | 40.0% | |
| !! | ATCAAGAGTGCTGCAGAATA+AGG | + | chr2_2:12317082-12317101 | Msa0238580:CDS | 40.0% |
| CCCTTAAGAGCTCTTCTTAA+AGG | - | chr2_2:12317117-12317136 | None:intergenic | 40.0% | |
| AACAGGATCAACCTGAACAA+CGG | - | chr2_2:12317202-12317221 | None:intergenic | 40.0% | |
| !!! | TCAGGTTGATCCTGTTTTTG+AGG | + | chr2_2:12317206-12317225 | Msa0238580:CDS | 40.0% |
| !!! | CAGGTTGATCCTGTTTTTGA+GGG | + | chr2_2:12317207-12317226 | Msa0238580:CDS | 40.0% |
| !!! | TGATCCTGTTTTTGAGGGAT+TGG | + | chr2_2:12317212-12317231 | Msa0238580:CDS | 40.0% |
| !! | TTTTTGAGGGATTGGATGGT+GGG | + | chr2_2:12317220-12317239 | Msa0238580:CDS | 40.0% |
| TTACCCTTCACATTTGCAAC+CGG | - | chr2_2:12317270-12317289 | None:intergenic | 40.0% | |
| ATGACATATGGACCTTCCTT+AGG | + | chr2_2:12317289-12317308 | Msa0238580:CDS | 40.0% | |
| TCACAAGGATACGTTTCCAT+TGG | + | chr2_2:12317342-12317361 | Msa0238580:CDS | 40.0% | |
| TCCGTTTCCATTACCATTCT+GGG | - | chr2_2:12317493-12317512 | None:intergenic | 40.0% | |
| AGTTGCAGAGACATTTGCAT+GGG | - | chr2_2:12317520-12317539 | None:intergenic | 40.0% | |
| TGTTACCATTCTCCTACTGA+AGG | + | chr2_2:12317739-12317758 | Msa0238580:intron | 40.0% | |
| GATTTGGCAGAGAATTTAGC+AGG | + | chr2_2:12317844-12317863 | Msa0238580:CDS | 40.0% | |
| ! | GTTGGAAAATTTAGAGCGGA+TGG | + | chr2_2:12317880-12317899 | Msa0238580:CDS | 40.0% |
| AGAATATGCGAAGAGTGAAC+TGG | + | chr2_2:12317912-12317931 | Msa0238580:CDS | 40.0% | |
| GAATATGCGAAGAGTGAACT+GGG | + | chr2_2:12317913-12317932 | Msa0238580:CDS | 40.0% | |
| AATATGCGAAGAGTGAACTG+GGG | + | chr2_2:12317914-12317933 | Msa0238580:CDS | 40.0% | |
| !! | TAGGGAAGAAGAGTATTGTG+GGG | - | chr2_2:12317951-12317970 | None:intergenic | 40.0% |
| TCTTCCCTAAACACTCTTCT+CGG | + | chr2_2:12317962-12317981 | Msa0238580:CDS | 40.0% | |
| ! | TCAACGTCTCTCTTTTCTGA+AGG | - | chr2_2:12318000-12318019 | None:intergenic | 40.0% |
| !! | GAGAGACGTTGATTCATTAC+TGG | + | chr2_2:12318008-12318027 | Msa0238580:CDS | 40.0% |
| AAGGTTCCATCACACAATAC+TGG | + | chr2_2:12318076-12318095 | Msa0238580:three_prime_UTR | 40.0% | |
| ! | GAATGTGGGAATGACAGTTT+TGG | + | chr2_2:12318137-12318156 | Msa0238580:three_prime_UTR | 40.0% |
| ATTGCAAATTGTCGAGCTTG+TGG | - | chr2_2:12318402-12318421 | None:intergenic | 40.0% | |
| ACGTTTGTGTTCTGTGTTTC+AGG | - | chr2_2:12318517-12318536 | None:intergenic | 40.0% | |
| AAACACAGAACACAAACGTG+CGG | + | chr2_2:12318518-12318537 | Msa0238580:three_prime_UTR | 40.0% | |
| TGTGGCTTGAGGTAATTGGA+TGG | - | chr2_2:12315435-12315454 | None:intergenic | 45.0% | |
| TGTGATGCTTATGTGGCTTG+AGG | - | chr2_2:12315446-12315465 | None:intergenic | 45.0% | |
| ATAAAGAGAAGGGTGATGCG+AGG | - | chr2_2:12315512-12315531 | None:intergenic | 45.0% | |
| AGATCCGATACGAGAGAAGA+AGG | - | chr2_2:12315672-12315691 | None:intergenic | 45.0% | |
| GGATCTTCGTCTGAATCCAA+AGG | + | chr2_2:12315686-12315705 | Msa0238580:CDS | 45.0% | |
| ! | GGTTTGCTTGATCAAGTGAG+TGG | + | chr2_2:12316260-12316279 | Msa0238580:intron | 45.0% |
| ! | AATACGCACATTTGACGGGT+AGG | + | chr2_2:12316887-12316906 | Msa0238580:CDS | 45.0% |
| CGGGGAACATGTATTCAATG+CGG | - | chr2_2:12316999-12317018 | None:intergenic | 45.0% | |
| TGAATACATGTTCCCCGATG+CGG | + | chr2_2:12317002-12317021 | Msa0238580:CDS | 45.0% | |
| ! | GGGGCTCTTCTCATTTTATG+AGG | + | chr2_2:12317053-12317072 | Msa0238580:CDS | 45.0% |
| !! | AGAGTGCTGCAGAATAAGGA+AGG | + | chr2_2:12317086-12317105 | Msa0238580:CDS | 45.0% |
| CTCTTAAGGGTTTGAGAGCA+TGG | + | chr2_2:12317127-12317146 | Msa0238580:CDS | 45.0% | |
| ! | GGTTTGAGAGCATGGATAAC+TGG | + | chr2_2:12317135-12317154 | Msa0238580:CDS | 45.0% |
| ACAGGATCAACCTGAACAAC+GGG | - | chr2_2:12317201-12317220 | None:intergenic | 45.0% | |
| CCATCCAATCCCTCAAAAAC+AGG | - | chr2_2:12317219-12317238 | None:intergenic | 45.0% | |
| !!! | CCTGTTTTTGAGGGATTGGA+TGG | + | chr2_2:12317216-12317235 | Msa0238580:CDS | 45.0% |
| !! | GTTTTTGAGGGATTGGATGG+TGG | + | chr2_2:12317219-12317238 | Msa0238580:CDS | 45.0% |
| !! | GGAATGGTAGCCTTGTTAAG+TGG | + | chr2_2:12317241-12317260 | Msa0238580:CDS | 45.0% |
| !! | TAGCCTTGTTAAGTGGAACC+CGG | + | chr2_2:12317248-12317267 | Msa0238580:CDS | 45.0% |
| AACCCGGTTGCAAATGTGAA+GGG | + | chr2_2:12317264-12317283 | Msa0238580:CDS | 45.0% | |
| TACCCTTCACATTTGCAACC+GGG | - | chr2_2:12317269-12317288 | None:intergenic | 45.0% | |
| ATGGACCTTCCTTAGGACAA+TGG | + | chr2_2:12317296-12317315 | Msa0238580:CDS | 45.0% | |
| CACATCCATTGTCCTAAGGA+AGG | - | chr2_2:12317304-12317323 | None:intergenic | 45.0% | |
| TGTGCATGGTTCACAACCAA+TGG | - | chr2_2:12317361-12317380 | None:intergenic | 45.0% | |
| TTGGTTGTGAACCATGCACA+AGG | + | chr2_2:12317361-12317380 | Msa0238580:CDS | 45.0% | |
| AGCATGAAAGAGAGGGAAGA+TGG | + | chr2_2:12317400-12317419 | Msa0238580:CDS | 45.0% | |
| ATGAAAGAGAGGGAAGATGG+TGG | + | chr2_2:12317403-12317422 | Msa0238580:CDS | 45.0% | |
| AAGACCACACTCCTTTGCTT+TGG | - | chr2_2:12317439-12317458 | None:intergenic | 45.0% | |
| ! | AAGGAGTGTGGTCTTCACAA+AGG | + | chr2_2:12317444-12317463 | Msa0238580:CDS | 45.0% |
| !! | GCCCAGAATGGTAATGGAAA+CGG | + | chr2_2:12317489-12317508 | Msa0238580:CDS | 45.0% |
| CTCCGTTTCCATTACCATTC+TGG | - | chr2_2:12317494-12317513 | None:intergenic | 45.0% | |
| CAGTTGCAGAGACATTTGCA+TGG | - | chr2_2:12317521-12317540 | None:intergenic | 45.0% | |
| ATGCACCTTCAGTAGGAGAA+TGG | - | chr2_2:12317747-12317766 | None:intergenic | 45.0% | |
| TTTGGCACTTCACTCGAATG+TGG | + | chr2_2:12318122-12318141 | Msa0238580:three_prime_UTR | 45.0% | |
| TTGGCACTTCACTCGAATGT+GGG | + | chr2_2:12318123-12318142 | Msa0238580:three_prime_UTR | 45.0% | |
| GTGATGCGTAACGAGTTTAG+TGG | - | chr2_2:12318427-12318446 | None:intergenic | 45.0% | |
| GGGTGATGCGAGGAATTTGA+AGG | - | chr2_2:12315502-12315521 | None:intergenic | 50.0% | |
| GCAACGATAGTTGCTGCAAG+AGG | - | chr2_2:12315942-12315961 | None:intergenic | 50.0% | |
| ! | ATTTGACGGGTAGGCCATTC+AGG | + | chr2_2:12316896-12316915 | Msa0238580:CDS | 50.0% |
| ! | TTTGACGGGTAGGCCATTCA+GGG | + | chr2_2:12316897-12316916 | Msa0238580:CDS | 50.0% |
| TCCAGACTGAACACCCTGAA+TGG | - | chr2_2:12316913-12316932 | None:intergenic | 50.0% | |
| !! | GATGCAGTTGAGAAGCGCTA+TGG | + | chr2_2:12316970-12316989 | Msa0238580:CDS | 50.0% |
| CAGAGAAAAGATCAGTCGCC+TGG | + | chr2_2:12317159-12317178 | Msa0238580:CDS | 50.0% | |
| AAGATCAGTCGCCTGGTACT+AGG | + | chr2_2:12317166-12317185 | Msa0238580:CDS | 50.0% | |
| GGTACTTCAGACCTAGTACC+AGG | - | chr2_2:12317180-12317199 | None:intergenic | 50.0% | |
| ! | GTCTGAAGTACCCGTTGTTC+AGG | + | chr2_2:12317188-12317207 | Msa0238580:CDS | 50.0% |
| CAACCGGGTTCCACTTAACA+AGG | - | chr2_2:12317254-12317273 | None:intergenic | 50.0% | |
| GAACCCGGTTGCAAATGTGA+AGG | + | chr2_2:12317263-12317282 | Msa0238580:CDS | 50.0% | |
| CAGGCACATCCATTGTCCTA+AGG | - | chr2_2:12317308-12317327 | None:intergenic | 50.0% | |
| TCATGCTGACCAGGCAAAAC+TGG | - | chr2_2:12317387-12317406 | None:intergenic | 50.0% | |
| CCTGGTCAGCATGAAAGAGA+GGG | + | chr2_2:12317393-12317412 | Msa0238580:CDS | 50.0% | |
| ! | AAAGAGAGGGAAGATGGTGG+TGG | + | chr2_2:12317406-12317425 | Msa0238580:CDS | 50.0% |
| ! | AAGAGAGGGAAGATGGTGGT+GGG | + | chr2_2:12317407-12317426 | Msa0238580:CDS | 50.0% |
| GATGCCAAAGCAAAGGAGTG+TGG | + | chr2_2:12317432-12317451 | Msa0238580:CDS | 50.0% | |
| GATGCTGCCCAGAATGGTAA+TGG | + | chr2_2:12317483-12317502 | Msa0238580:CDS | 50.0% | |
| GCTCAAGCTGACCACATTCT+GGG | - | chr2_2:12317562-12317581 | None:intergenic | 50.0% | |
| TGCTCAAGCTGACCACATTC+TGG | - | chr2_2:12317563-12317582 | None:intergenic | 50.0% | |
| AGAATGTGGTCAGCTTGAGC+AGG | + | chr2_2:12317562-12317581 | Msa0238580:CDS | 50.0% | |
| GAATGTGGTCAGCTTGAGCA+GGG | + | chr2_2:12317563-12317582 | Msa0238580:CDS | 50.0% | |
| ! | CAACGATCCAGGGCTCTTTT+CGG | - | chr2_2:12317620-12317639 | None:intergenic | 50.0% |
| GCATAGAGCACAACGATCCA+GGG | - | chr2_2:12317630-12317649 | None:intergenic | 50.0% | |
| TGCATAGAGCACAACGATCC+AGG | - | chr2_2:12317631-12317650 | None:intergenic | 50.0% | |
| TCGTTGTGCTCTATGCACCA+TGG | + | chr2_2:12317634-12317653 | Msa0238580:CDS | 50.0% | |
| GCAGAGAATTTAGCAGGGTC+AGG | + | chr2_2:12317850-12317869 | Msa0238580:CDS | 50.0% | |
| TTTAGCAGGGTCAGGAGTGA+AGG | + | chr2_2:12317858-12317877 | Msa0238580:CDS | 50.0% | |
| !! | TCGGCCGAGAAGAGTGTTTA+GGG | - | chr2_2:12317969-12317988 | None:intergenic | 50.0% |
| !! | ATCGGCCGAGAAGAGTGTTT+AGG | - | chr2_2:12317970-12317989 | None:intergenic | 50.0% |
| GAAGTAACGGCGAGAGCCAT+TGG | - | chr2_2:12315617-12315636 | None:intergenic | 55.0% | |
| GCAGCAACTATCGTTGCACC+TGG | + | chr2_2:12315945-12315964 | Msa0238580:CDS | 55.0% | |
| ! | GCCATTCAGGGTGTTCAGTC+TGG | + | chr2_2:12316909-12316928 | Msa0238580:CDS | 55.0% |
| ! | AGGGTGTTCAGTCTGGACAC+TGG | + | chr2_2:12316916-12316935 | Msa0238580:CDS | 55.0% |
| GGGTGTTCAGTCTGGACACT+GGG | + | chr2_2:12316917-12316936 | Msa0238580:CDS | 55.0% | |
| TCCCTGAACCTCAACCGCAT+CGG | - | chr2_2:12317019-12317038 | None:intergenic | 55.0% | |
| !! | GAGGGATTGGATGGTGGGAA+TGG | + | chr2_2:12317225-12317244 | Msa0238580:CDS | 55.0% |
| !! | GGCAAAACTGGCCTTGTGCA+TGG | - | chr2_2:12317375-12317394 | None:intergenic | 55.0% |
| ! | TGCACAAGGCCAGTTTTGCC+TGG | + | chr2_2:12317375-12317394 | Msa0238580:CDS | 55.0% |
| GCCTGGTCAGCATGAAAGAG+AGG | + | chr2_2:12317392-12317411 | Msa0238580:CDS | 55.0% | |
| CCCTCTCTTTCATGCTGACC+AGG | - | chr2_2:12317396-12317415 | None:intergenic | 55.0% | |
| GTGGGAGGATGCCAAAGCAA+AGG | + | chr2_2:12317425-12317444 | Msa0238580:CDS | 55.0% | |
| CAGGATGATGCTGCCCAGAA+TGG | + | chr2_2:12317477-12317496 | Msa0238580:CDS | 55.0% | |
| TGCGAAGAGTGAACTGGGGT+TGG | + | chr2_2:12317918-12317937 | Msa0238580:CDS | 55.0% | |
| GCGAAGAGTGAACTGGGGTT+GGG | + | chr2_2:12317919-12317938 | Msa0238580:CDS | 55.0% | |
| ! | GTGGCGCGTGGTGCTTGTTT+TGG | - | chr2_2:12315403-12315422 | None:intergenic | 60.0% |
| TGGTGAAAACTCGTGGCGCG+TGG | - | chr2_2:12315415-12315434 | None:intergenic | 60.0% | |
| CATGTTCCCCGATGCGGTTG+AGG | + | chr2_2:12317008-12317027 | Msa0238580:CDS | 60.0% | |
| CCTGAACCTCAACCGCATCG+GGG | - | chr2_2:12317017-12317036 | None:intergenic | 60.0% | |
| CCCTGAACCTCAACCGCATC+GGG | - | chr2_2:12317018-12317037 | None:intergenic | 60.0% | |
| CCCGATGCGGTTGAGGTTCA+GGG | + | chr2_2:12317015-12317034 | Msa0238580:CDS | 60.0% | |
| !! | AGAGGGAAGATGGTGGTGGG+AGG | + | chr2_2:12317410-12317429 | Msa0238580:CDS | 60.0% |
| TGGAGGACCGAAAAGAGCCC+TGG | + | chr2_2:12317610-12317629 | Msa0238580:CDS | 60.0% | |
| !! | ACCATGGTGCCGCTTCTGTC+AGG | + | chr2_2:12317650-12317669 | Msa0238580:CDS | 60.0% |
| ACCTGACAGAAGCGGCACCA+TGG | - | chr2_2:12317654-12317673 | None:intergenic | 60.0% | |
| GCAGGGTCAGGAGTGAAGGT+TGG | + | chr2_2:12317862-12317881 | Msa0238580:CDS | 60.0% | |
| CCCCGATGCGGTTGAGGTTC+AGG | + | chr2_2:12317014-12317033 | Msa0238580:CDS | 65.0% | |
| GTGGTCAGCTTGAGCAGGGC+TGG | + | chr2_2:12317567-12317586 | Msa0238580:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_2 | gene | 12315393 | 12318564 | 12315393 | ID=Msa0238580;Name=Msa0238580 |
| chr2_2 | mRNA | 12315393 | 12318564 | 12315393 | ID=Msa0238580-mRNA-1;Parent=Msa0238580;Name=Msa0238580-mRNA-1;_AED=0.03;_eAED=0.03;_QI=101|1|1|1|1|1|5|511|510 |
| chr2_2 | exon | 12315393 | 12315707 | 12315393 | ID=Msa0238580-mRNA-1:exon:5218;Parent=Msa0238580-mRNA-1 |
| chr2_2 | exon | 12315814 | 12315966 | 12315814 | ID=Msa0238580-mRNA-1:exon:5219;Parent=Msa0238580-mRNA-1 |
| chr2_2 | exon | 12316069 | 12316192 | 12316069 | ID=Msa0238580-mRNA-1:exon:5220;Parent=Msa0238580-mRNA-1 |
| chr2_2 | exon | 12316861 | 12317671 | 12316861 | ID=Msa0238580-mRNA-1:exon:5221;Parent=Msa0238580-mRNA-1 |
| chr2_2 | exon | 12317823 | 12318564 | 12317823 | ID=Msa0238580-mRNA-1:exon:5222;Parent=Msa0238580-mRNA-1 |
| chr2_2 | five_prime_UTR | 12315393 | 12315493 | 12315393 | ID=Msa0238580-mRNA-1:five_prime_utr;Parent=Msa0238580-mRNA-1 |
| chr2_2 | CDS | 12315494 | 12315707 | 12315494 | ID=Msa0238580-mRNA-1:cds;Parent=Msa0238580-mRNA-1 |
| chr2_2 | CDS | 12315814 | 12315966 | 12315814 | ID=Msa0238580-mRNA-1:cds;Parent=Msa0238580-mRNA-1 |
| chr2_2 | CDS | 12316069 | 12316192 | 12316069 | ID=Msa0238580-mRNA-1:cds;Parent=Msa0238580-mRNA-1 |
| chr2_2 | CDS | 12316861 | 12317671 | 12316861 | ID=Msa0238580-mRNA-1:cds;Parent=Msa0238580-mRNA-1 |
| chr2_2 | CDS | 12317823 | 12318053 | 12317823 | ID=Msa0238580-mRNA-1:cds;Parent=Msa0238580-mRNA-1 |
| chr2_2 | three_prime_UTR | 12318054 | 12318564 | 12318054 | ID=Msa0238580-mRNA-1:three_prime_utr;Parent=Msa0238580-mRNA-1 |
| Gene Sequence |
| Protein sequence |
