Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0343510 | XP_013468064.1 | 86.145 | 498 | 28 | 2 | 1 | 496 | 1 | 459 | 0.0 | 855 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0343510 | sp|Q8GYY1|HSFA3_ARATH | 50.847 | 295 | 102 | 3 | 27 | 317 | 35 | 290 | 2.19e-89 | 282 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0343510 | A0A072VKE1 | 86.145 | 498 | 28 | 2 | 1 | 496 | 1 | 459 | 0.0 | 855 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0343510 | TF | HSF |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0024940 | Msa0343510 | 0.906926 | 8.795737e-81 | -8.615850e-47 |
| Msa0072430 | Msa0343510 | 0.898940 | 3.240710e-77 | -8.615850e-47 |
| Msa0120870 | Msa0343510 | 0.916909 | 1.009584e-85 | -8.615850e-47 |
| Msa0343510 | Msa0425830 | 0.816121 | 6.512012e-52 | -8.615850e-47 |
| Msa0343510 | Msa0472290 | 0.816843 | 4.485899e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0343510 | MtrunA17_Chr1g0179311 | 93.447 | 351 | 23 | 0 | 146 | 496 | 14 | 364 | 0.0 | 679 |
| Msa0343510 | MtrunA17_Chr5g0410881 | 43.253 | 289 | 109 | 5 | 31 | 304 | 16 | 264 | 1.14e-66 | 223 |
| Msa0343510 | MtrunA17_Chr1g0179321 | 94.444 | 108 | 4 | 1 | 1 | 106 | 1 | 108 | 8.98e-66 | 207 |
| Msa0343510 | MtrunA17_Chr3g0135831 | 36.962 | 395 | 181 | 11 | 33 | 422 | 32 | 363 | 2.12e-65 | 216 |
| Msa0343510 | MtrunA17_Chr4g0039891 | 37.135 | 342 | 149 | 7 | 45 | 362 | 10 | 309 | 3.10e-62 | 211 |
| Msa0343510 | MtrunA17_Chr1g0204741 | 44.151 | 265 | 101 | 4 | 25 | 281 | 15 | 240 | 5.14e-62 | 205 |
| Msa0343510 | MtrunA17_Chr7g0260331 | 40.196 | 306 | 136 | 5 | 13 | 311 | 16 | 281 | 1.35e-61 | 205 |
| Msa0343510 | MtrunA17_Chr4g0071051 | 37.891 | 256 | 115 | 2 | 17 | 272 | 71 | 282 | 6.01e-52 | 181 |
| Msa0343510 | MtrunA17_Chr1g0185131 | 42.358 | 229 | 84 | 3 | 34 | 262 | 19 | 199 | 3.65e-50 | 174 |
| Msa0343510 | MtrunA17_Chr8g0379701 | 35.616 | 219 | 100 | 2 | 43 | 259 | 8 | 187 | 1.50e-39 | 147 |
| Msa0343510 | MtrunA17_Chr6g0467041 | 34.440 | 241 | 112 | 4 | 45 | 283 | 20 | 216 | 2.79e-39 | 145 |
| Msa0343510 | MtrunA17_Chr8g0392001 | 33.441 | 311 | 149 | 7 | 45 | 346 | 20 | 281 | 5.21e-39 | 145 |
| Msa0343510 | MtrunA17_Chr2g0330821 | 36.404 | 228 | 104 | 2 | 47 | 274 | 79 | 265 | 7.90e-39 | 144 |
| Msa0343510 | MtrunA17_Chr8g0378061 | 30.899 | 356 | 174 | 11 | 48 | 386 | 23 | 323 | 1.37e-38 | 147 |
| Msa0343510 | MtrunA17_Chr6g0485571 | 32.911 | 237 | 118 | 3 | 45 | 281 | 9 | 204 | 5.68e-37 | 139 |
| Msa0343510 | MtrunA17_Chr3g0134031 | 48.201 | 139 | 33 | 1 | 47 | 185 | 24 | 123 | 3.95e-33 | 129 |
| Msa0343510 | MtrunA17_Chr5g0397881 | 44.526 | 137 | 37 | 1 | 41 | 177 | 18 | 115 | 5.34e-32 | 125 |
| Msa0343510 | MtrunA17_Chr2g0284481 | 30.000 | 220 | 110 | 2 | 45 | 259 | 13 | 193 | 6.86e-32 | 126 |
| Msa0343510 | MtrunA17_Chr7g0257331 | 36.364 | 198 | 76 | 2 | 37 | 223 | 12 | 170 | 7.70e-32 | 122 |
| Msa0343510 | MtrunA17_Chr5g0402291 | 34.167 | 240 | 104 | 5 | 41 | 265 | 3 | 203 | 2.38e-31 | 122 |
| Msa0343510 | MtrunA17_Chr5g0441531 | 35.149 | 202 | 71 | 3 | 41 | 221 | 19 | 181 | 3.14e-29 | 115 |
| Msa0343510 | MtrunA17_Chr6g0472421 | 43.511 | 131 | 35 | 1 | 47 | 177 | 33 | 124 | 2.36e-28 | 115 |
| Msa0343510 | MtrunA17_Chr1g0203601 | 33.333 | 210 | 72 | 3 | 41 | 221 | 12 | 182 | 6.66e-28 | 113 |
| Msa0343510 | MtrunA17_Chr8g0375041 | 33.333 | 210 | 82 | 4 | 44 | 235 | 6 | 175 | 4.01e-27 | 109 |
| Msa0343510 | MtrunA17_Chr4g0047421 | 33.516 | 182 | 77 | 3 | 47 | 224 | 33 | 174 | 1.80e-24 | 101 |
| Msa0343510 | MtrunA17_Chr2g0330841 | 34.752 | 141 | 90 | 1 | 143 | 283 | 38 | 176 | 9.66e-19 | 88.2 |
| Msa0343510 | MtrunA17_Chr4g0023771 | 58.462 | 65 | 26 | 1 | 45 | 108 | 13 | 77 | 2.06e-18 | 80.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0343510 | AT5G03720.2 | 50.847 | 295 | 102 | 3 | 27 | 317 | 35 | 290 | 2.22e-90 | 282 |
| Msa0343510 | AT5G03720.1 | 50.847 | 295 | 102 | 3 | 27 | 317 | 35 | 290 | 2.22e-90 | 282 |
| Msa0343510 | AT5G16820.1 | 36.817 | 421 | 183 | 11 | 45 | 444 | 25 | 383 | 6.63e-65 | 218 |
| Msa0343510 | AT5G16820.2 | 36.817 | 421 | 183 | 11 | 45 | 444 | 25 | 383 | 6.63e-65 | 218 |
| Msa0343510 | AT1G32330.2 | 40.196 | 306 | 121 | 5 | 22 | 304 | 7 | 273 | 5.74e-63 | 213 |
| Msa0343510 | AT1G32330.1 | 40.196 | 306 | 121 | 5 | 22 | 304 | 7 | 273 | 7.74e-63 | 213 |
| Msa0343510 | AT3G02990.1 | 41.967 | 305 | 119 | 7 | 42 | 332 | 18 | 278 | 5.46e-61 | 207 |
| Msa0343510 | AT4G17750.1 | 38.730 | 315 | 118 | 7 | 26 | 304 | 21 | 296 | 8.31e-58 | 199 |
| Msa0343510 | AT3G22830.1 | 40.927 | 259 | 105 | 2 | 23 | 272 | 37 | 256 | 2.38e-57 | 196 |
| Msa0343510 | AT2G26150.1 | 41.897 | 253 | 103 | 4 | 34 | 282 | 31 | 243 | 1.02e-55 | 190 |
| Msa0343510 | AT2G26150.4 | 41.897 | 253 | 103 | 4 | 34 | 282 | 31 | 243 | 1.02e-55 | 190 |
| Msa0343510 | AT3G63350.1 | 42.083 | 240 | 98 | 2 | 34 | 273 | 15 | 213 | 1.53e-54 | 184 |
| Msa0343510 | AT3G51910.1 | 40.000 | 250 | 93 | 4 | 37 | 281 | 19 | 216 | 2.90e-50 | 173 |
| Msa0343510 | AT5G43840.1 | 36.140 | 285 | 122 | 7 | 32 | 313 | 4 | 231 | 1.25e-48 | 169 |
| Msa0343510 | AT5G54070.1 | 34.766 | 256 | 117 | 4 | 45 | 296 | 69 | 278 | 1.07e-43 | 157 |
| Msa0343510 | AT1G67970.1 | 35.227 | 264 | 128 | 4 | 45 | 304 | 17 | 241 | 4.14e-42 | 154 |
| Msa0343510 | AT4G13980.1 | 33.475 | 236 | 116 | 2 | 48 | 283 | 24 | 218 | 6.25e-40 | 150 |
| Msa0343510 | AT3G24520.1 | 36.100 | 241 | 90 | 6 | 45 | 281 | 15 | 195 | 1.55e-37 | 140 |
| Msa0343510 | AT5G45710.3 | 34.052 | 232 | 111 | 3 | 43 | 272 | 9 | 200 | 4.33e-35 | 134 |
| Msa0343510 | AT5G45710.1 | 34.052 | 232 | 111 | 3 | 43 | 272 | 9 | 200 | 4.33e-35 | 134 |
| Msa0343510 | AT4G18880.1 | 36.283 | 226 | 102 | 2 | 43 | 265 | 11 | 197 | 2.32e-33 | 130 |
| Msa0343510 | AT5G62020.1 | 41.667 | 144 | 45 | 1 | 41 | 184 | 17 | 121 | 1.22e-30 | 121 |
| Msa0343510 | AT1G46264.1 | 46.269 | 134 | 33 | 1 | 47 | 180 | 34 | 128 | 1.39e-30 | 122 |
| Msa0343510 | AT4G11660.1 | 43.571 | 140 | 40 | 1 | 41 | 180 | 53 | 153 | 4.88e-30 | 121 |
| Msa0343510 | AT4G36990.1 | 32.159 | 227 | 107 | 3 | 35 | 253 | 2 | 189 | 2.94e-29 | 117 |
| Msa0343510 | AT2G26150.3 | 46.099 | 141 | 71 | 3 | 146 | 282 | 49 | 188 | 1.54e-28 | 115 |
| Msa0343510 | AT2G26150.2 | 46.099 | 141 | 71 | 3 | 146 | 282 | 49 | 188 | 1.54e-28 | 115 |
| Msa0343510 | AT2G41690.1 | 40.714 | 140 | 44 | 1 | 41 | 180 | 34 | 134 | 2.07e-28 | 113 |
Find 112 sgRNAs with CRISPR-Local
Find 171 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTAAGTGCTTCTTCCCTTTC+TGG | 0.084023 | 3_1:+1699858 | None:intergenic |
| CAAAGATGAAGAAGAAAATT+TGG | 0.205164 | 3_1:+1700901 | None:intergenic |
| AATTCAGAAACTAATATTAT+TGG | 0.214900 | 3_1:-1699069 | Msa0343510:CDS |
| ACGACCGGCTTCCATGATTT+TGG | 0.229018 | 3_1:-1698645 | Msa0343510:three_prime_UTR |
| TTTGAAGGGTTTCAATCTAT+TGG | 0.240093 | 3_1:-1698958 | Msa0343510:CDS |
| GAAGTTTGGGTATTGATAAT+TGG | 0.249663 | 3_1:-1698765 | Msa0343510:CDS |
| GAAACAAATGGTATCTTTCT+TGG | 0.279705 | 3_1:-1699433 | Msa0343510:CDS |
| CTTTGTTGTTTGGGATCCTT+TGG | 0.287745 | 3_1:-1700711 | Msa0343510:CDS |
| TCACCTTTAGTCATTTCTTT+AGG | 0.294012 | 3_1:+1699165 | None:intergenic |
| GATATGTGGGATATTGGTTT+TGG | 0.304447 | 3_1:-1698787 | Msa0343510:CDS |
| TTATCAAGCAAGAAGATATA+TGG | 0.310553 | 3_1:-1698924 | Msa0343510:CDS |
| TAGTGAGGTACCAACCAAAT+TGG | 0.312029 | 3_1:-1699272 | Msa0343510:CDS |
| ATGTGGGATCCTTTGAATTA+TGG | 0.316094 | 3_1:-1698850 | Msa0343510:CDS |
| TGGTGTTAGCTTTGTTGTTT+GGG | 0.316297 | 3_1:-1700720 | Msa0343510:CDS |
| GGCGAAGGATCATCTAGTTT+TGG | 0.320995 | 3_1:-1699048 | Msa0343510:CDS |
| TTGAAGGGTTTCAATCTATT+GGG | 0.328172 | 3_1:-1698957 | Msa0343510:CDS |
| TCAGGAATAACTTCTTCATT+TGG | 0.329440 | 3_1:+1698985 | None:intergenic |
| AAAATCTTGATTCTTAAGTT+TGG | 0.331835 | 3_1:-1698675 | Msa0343510:three_prime_UTR |
| ATGGTGTTAGCTTTGTTGTT+TGG | 0.339618 | 3_1:-1700721 | Msa0343510:CDS |
| ACAAACTTTCTTCTAACTCT+TGG | 0.347851 | 3_1:+1699339 | None:intergenic |
| TACAATACAGTTAGCTGTAT+TGG | 0.359866 | 3_1:+1700044 | None:intergenic |
| AGTGAGGTACCAACCAAATT+GGG | 0.367055 | 3_1:-1699271 | Msa0343510:CDS |
| TCTCTAATAGCAGGGAAATC+TGG | 0.369457 | 3_1:-1699597 | Msa0343510:intron |
| ACAGCACCAACATTGAAGTT+AGG | 0.369889 | 3_1:+1698898 | None:intergenic |
| ATTAAGCTGACGAACAAAAC+TGG | 0.370082 | 3_1:+1700640 | None:intergenic |
| TTTGAAAGAAATGGTGGAAC+TGG | 0.396168 | 3_1:+1700800 | None:intergenic |
| AAAGATGAAGAAGAAAATTT+GGG | 0.405694 | 3_1:+1700902 | None:intergenic |
| GCAAAATTGACACCGACAAA+TGG | 0.406829 | 3_1:-1699901 | Msa0343510:CDS |
| GAGACTCCTACTGCTGGAAT+TGG | 0.414069 | 3_1:-1700237 | Msa0343510:CDS |
| AGGTTGAGATTGAAAGATTG+AGG | 0.415211 | 3_1:-1699569 | Msa0343510:CDS |
| ATGTCAGATATGTGGGATAT+TGG | 0.416242 | 3_1:-1698793 | Msa0343510:CDS |
| AAGATGAAAATCCCTTGAAA+AGG | 0.429844 | 3_1:+1700189 | None:intergenic |
| TGAGATTGAAAGATTGAGGA+AGG | 0.438960 | 3_1:-1699565 | Msa0343510:CDS |
| TGCTCAAAGGCAACAATTGT+AGG | 0.443415 | 3_1:+1698548 | None:intergenic |
| GTTGGATCTTCTTCTGATGC+AGG | 0.443789 | 3_1:-1699782 | Msa0343510:intron |
| AATTATGGAGTACCTGACTT+TGG | 0.444329 | 3_1:-1698835 | Msa0343510:CDS |
| TTCAATGAAGGTTTCCAGAA+AGG | 0.444610 | 3_1:-1699872 | Msa0343510:CDS |
| TGAAACCCTTCAAAATTCTC+AGG | 0.455295 | 3_1:+1698967 | None:intergenic |
| TTGCATTCAATCAATTCATC+GGG | 0.455399 | 3_1:-1698407 | Msa0343510:three_prime_UTR |
| TCGTCAGCTTAATACTTATG+TGG | 0.457473 | 3_1:-1700630 | Msa0343510:CDS |
| GAAGAAGAAAATGTCAAAGA+TGG | 0.457561 | 3_1:-1699300 | Msa0343510:CDS |
| TAGTGATGTTCCTGTGCCTA+TGG | 0.466887 | 3_1:-1700840 | Msa0343510:CDS |
| TTTGAGCAATTATAGTTCCT+AGG | 0.467123 | 3_1:-1698533 | Msa0343510:three_prime_UTR |
| CTTTGAATCCGATCATATCA+TGG | 0.467206 | 3_1:-1700751 | Msa0343510:CDS |
| TCAATGAAGGTTTCCAGAAA+GGG | 0.468452 | 3_1:-1699871 | Msa0343510:CDS |
| TGTAACTTCTGCCAAAATCA+TGG | 0.468787 | 3_1:+1698634 | None:intergenic |
| GAATATGAAGCATCAGCTAT+AGG | 0.469331 | 3_1:-1700875 | Msa0343510:CDS |
| TGACTATCTATTTCATCAAA+AGG | 0.470522 | 3_1:+1698727 | None:intergenic |
| ATTGCATTCAATCAATTCAT+CGG | 0.472136 | 3_1:-1698408 | Msa0343510:three_prime_UTR |
| TATCAAGCAAGAAGATATAT+GGG | 0.482434 | 3_1:-1698923 | Msa0343510:CDS |
| CAGCAAGTTGGTAACTATGT+TGG | 0.484482 | 3_1:-1699800 | Msa0343510:CDS |
| CAGCACCAACATTGAAGTTA+GGG | 0.486019 | 3_1:+1698899 | None:intergenic |
| CAAAATTGACACCGACAAAT+GGG | 0.486680 | 3_1:-1699900 | Msa0343510:CDS |
| GAAACTAATATTATTGGCGA+AGG | 0.504296 | 3_1:-1699063 | Msa0343510:CDS |
| AGATGAAAATCCCTTGAAAA+GGG | 0.505105 | 3_1:+1700190 | None:intergenic |
| TCAGCTATAGGTGGTGGTAC+TGG | 0.505325 | 3_1:-1700863 | Msa0343510:CDS |
| TTGAGCAATTATAGTTCCTA+GGG | 0.505834 | 3_1:-1698532 | Msa0343510:three_prime_UTR |
| CTACCTAAAGAAATGACTAA+AGG | 0.514970 | 3_1:-1699168 | Msa0343510:CDS |
| TCAAAAGGAGATTCATCAGC+TGG | 0.517066 | 3_1:+1698742 | None:intergenic |
| TTGAAAGATTGAGGAAGGAG+AGG | 0.521106 | 3_1:-1699560 | Msa0343510:CDS |
| GATATGATCGGATTCAAAGA+AGG | 0.522372 | 3_1:+1700755 | None:intergenic |
| CGTCAGCTTAATACTTATGT+GGG | 0.527984 | 3_1:-1700629 | Msa0343510:intron |
| CATTCAGAGACTCCTACTGC+TGG | 0.530276 | 3_1:-1700243 | Msa0343510:intron |
| AGATCAAGTGAAAGATAGTG+AGG | 0.532262 | 3_1:+1699189 | None:intergenic |
| TTGAAAGAAATGGTGGAACT+GGG | 0.536323 | 3_1:+1700801 | None:intergenic |
| AACAACAAAGCTAACACCAT+TGG | 0.540487 | 3_1:+1700724 | None:intergenic |
| GTCCGGATTTGAAAACAACT+TGG | 0.541092 | 3_1:+1699410 | None:intergenic |
| TGAACAAAGACAGAAACAAA+TGG | 0.541684 | 3_1:-1699445 | Msa0343510:CDS |
| ACTGCTGGAATTGGCAACAT+AGG | 0.543095 | 3_1:-1700228 | Msa0343510:CDS |
| CTTGTAACAACTCCAAAGTC+AGG | 0.546441 | 3_1:+1698823 | None:intergenic |
| CGAATGACGGCTAGTCACGC+AGG | 0.554003 | 3_1:-1699495 | Msa0343510:CDS |
| CTTGCTGAGATTGAGACGTC+CGG | 0.564728 | 3_1:+1699816 | None:intergenic |
| CATTCAATCAATTCATCGGG+TGG | 0.565624 | 3_1:-1698404 | Msa0343510:three_prime_UTR |
| GATGAATATGCTGCAATGCA+TGG | 0.570282 | 3_1:-1699105 | Msa0343510:CDS |
| TGGGACCCTAACTTCAATGT+TGG | 0.572995 | 3_1:-1698904 | Msa0343510:CDS |
| TCGGAGTTTCAATAAAATCA+CGG | 0.575050 | 3_1:-1698609 | Msa0343510:three_prime_UTR |
| TGAAGAGCATTCAAAGGCGC+CGG | 0.575159 | 3_1:-1699835 | Msa0343510:CDS |
| ATAACTCTTGCAAACTCCAA+AGG | 0.576307 | 3_1:+1700695 | None:intergenic |
| GTGGTGACATGTCAGATATG+TGG | 0.577350 | 3_1:-1698801 | Msa0343510:CDS |
| TTTAAGTAATTTAGTATCAG+CGG | 0.578690 | 3_1:-1698374 | Msa0343510:three_prime_UTR |
| GAAGCATCAGCTATAGGTGG+TGG | 0.582607 | 3_1:-1700869 | Msa0343510:CDS |
| ATCATATCATGGAGTTCCAA+TGG | 0.583067 | 3_1:-1700740 | Msa0343510:CDS |
| TTGGAACTCCATGATATGAT+CGG | 0.584421 | 3_1:+1700743 | None:intergenic |
| TCAGGTACTCCATAATTCAA+AGG | 0.586697 | 3_1:+1698841 | None:intergenic |
| TCTGCCAAAATCATGGAAGC+CGG | 0.586953 | 3_1:+1698641 | None:intergenic |
| CTCATCTGCAAACACTCCAT+AGG | 0.589952 | 3_1:+1700824 | None:intergenic |
| GTGAGGTACCAACCAAATTG+GGG | 0.592193 | 3_1:-1699270 | Msa0343510:CDS |
| ATATGATCGGATTCAAAGAA+GGG | 0.594477 | 3_1:+1700756 | None:intergenic |
| ATGTTGCCAATTCCAGCAGT+AGG | 0.594776 | 3_1:+1700231 | None:intergenic |
| TTGTTGTGTTTGAAGTGTCT+AGG | 0.595204 | 3_1:+1700668 | None:intergenic |
| TGCAAACACTCCATAGGCAC+AGG | 0.597520 | 3_1:+1700830 | None:intergenic |
| ACGCAGGTAATGTGAATCAA+AGG | 0.601321 | 3_1:-1699479 | Msa0343510:CDS |
| TAGGAACTATAATTGCTCAA+AGG | 0.601783 | 3_1:+1698535 | None:intergenic |
| AAGTTTGGCAGAATCACGAC+CGG | 0.604403 | 3_1:-1698660 | Msa0343510:three_prime_UTR |
| TTTGATGAAATAGATAGTCA+AGG | 0.610338 | 3_1:-1698724 | Msa0343510:CDS |
| TATTCAATAATATGTCCCCT+AGG | 0.611423 | 3_1:+1698516 | None:intergenic |
| TGGTGACATGTCAGATATGT+GGG | 0.612349 | 3_1:-1698800 | Msa0343510:CDS |
| CAAACTGTGGGAATGAGATG+TGG | 0.613012 | 3_1:-1698867 | Msa0343510:CDS |
| ACGTCTCAATCTCAGCAAGT+TGG | 0.616416 | 3_1:-1699812 | Msa0343510:CDS |
| ACAGCAGCAACAACGAATGA+CGG | 0.617265 | 3_1:-1699508 | Msa0343510:CDS |
| AGCAGGGAAATCTGGAGTCG+AGG | 0.619956 | 3_1:-1699589 | Msa0343510:intron |
| GACTTTGGAGTTGTTACAAG+TGG | 0.625352 | 3_1:-1698820 | Msa0343510:CDS |
| TCAAAGATGGAAAGATAGTG+AGG | 0.635058 | 3_1:-1699287 | Msa0343510:CDS |
| ACTTACTGAAGAGCATTCAA+AGG | 0.637027 | 3_1:-1699841 | Msa0343510:CDS |
| CTGTTGCTACTTCAAACTGT+GGG | 0.638412 | 3_1:-1698879 | Msa0343510:CDS |
| GATGAAATAGATAGTCAAGG+TGG | 0.640962 | 3_1:-1698721 | Msa0343510:CDS |
| GACTGTGTTAATGCAAGAAG+TGG | 0.653059 | 3_1:-1699538 | Msa0343510:CDS |
| AAACTGTGGGAATGAGATGT+GGG | 0.653938 | 3_1:-1698866 | Msa0343510:CDS |
| GCTGTTGCTACTTCAAACTG+TGG | 0.663813 | 3_1:-1698880 | Msa0343510:CDS |
| TATGAAGCATCAGCTATAGG+TGG | 0.681407 | 3_1:-1700872 | Msa0343510:CDS |
| TGAGCAATTATAGTTCCTAG+GGG | 0.691150 | 3_1:-1698531 | Msa0343510:three_prime_UTR |
| TGAGGTACCAACCAAATTGG+GGG | 0.710225 | 3_1:-1699269 | Msa0343510:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTACATTACATAGATTAATA+GGG | + | chr3_1:1698737-1698756 | None:intergenic | 15.0% |
| !! | AATTCAGAAACTAATATTAT+TGG | - | chr3_1:1700220-1700239 | Msa0343510:CDS | 15.0% |
| !! | AAAGATGAAGAAGAAAATTT+GGG | + | chr3_1:1698390-1698409 | None:intergenic | 20.0% |
| !!! | TCAAATGTTTTTGAAAGAAA+TGG | + | chr3_1:1698501-1698520 | None:intergenic | 20.0% |
| !! | TCTTTCAAAAACATTTGATT+TGG | - | chr3_1:1698503-1698522 | Msa0343510:three_prime_UTR | 20.0% |
| !! | TACATTACATAGATTAATAG+GGG | + | chr3_1:1698736-1698755 | None:intergenic | 20.0% |
| !! | GTTACATTACATAGATTAAT+AGG | + | chr3_1:1698738-1698757 | None:intergenic | 20.0% |
| !! | AACAATTTGATGTATCAATT+GGG | - | chr3_1:1698851-1698870 | Msa0343510:CDS | 20.0% |
| !! | TTATTCATTCTCAGATAATT+TGG | - | chr3_1:1699345-1699364 | Msa0343510:CDS | 20.0% |
| !!! | AACATTTTTTCCTTTGAAAA+GGG | + | chr3_1:1700278-1700297 | None:intergenic | 20.0% |
| !!! | TAACATTTTTTCCTTTGAAA+AGG | + | chr3_1:1700279-1700298 | None:intergenic | 20.0% |
| !!! | TTAAGAATCAAGATTTTCTT+AGG | + | chr3_1:1700611-1700630 | None:intergenic | 20.0% |
| !! | AAAATCTTGATTCTTAAGTT+TGG | - | chr3_1:1700614-1700633 | Msa0343510:intron | 20.0% |
| !! | TTTAAGTAATTTAGTATCAG+CGG | - | chr3_1:1700915-1700934 | Msa0343510:CDS | 20.0% |
| ! | CAAAGATGAAGAAGAAAATT+TGG | + | chr3_1:1698391-1698410 | None:intergenic | 25.0% |
| !! | ATTTTCTTCTTCATCTTTGA+TGG | - | chr3_1:1698392-1698411 | Msa0343510:three_prime_UTR | 25.0% |
| !!! | AATGTTTTTGAAAGAAATGG+TGG | + | chr3_1:1698498-1698517 | None:intergenic | 25.0% |
| ! | TTCAATCAACAAACACAAAA+GGG | + | chr3_1:1698833-1698852 | None:intergenic | 25.0% |
| ! | GAACAATTTGATGTATCAAT+TGG | - | chr3_1:1698850-1698869 | Msa0343510:CDS | 25.0% |
| !!! | TAAGCTTGTCTTTTTTGTTT+TGG | - | chr3_1:1699205-1699224 | Msa0343510:CDS | 25.0% |
| ! | AGAATGAATAAAACAGACAT+AGG | + | chr3_1:1699336-1699355 | None:intergenic | 25.0% |
| !! | TCACATCAAACCTTTTATAT+AGG | - | chr3_1:1699580-1699599 | Msa0343510:CDS | 25.0% |
| !!! | AGTTTGTTAGCCTATATAAA+AGG | + | chr3_1:1699593-1699612 | None:intergenic | 25.0% |
| !! | TGACATTTTCTTCTTCATTT+TGG | + | chr3_1:1699985-1700004 | None:intergenic | 25.0% |
| !!! | ACATTTTTTCCTTTGAAAAG+GGG | + | chr3_1:1700277-1700296 | None:intergenic | 25.0% |
| !! | TTATTCCTGAGAATTTTGAA+GGG | - | chr3_1:1700317-1700336 | Msa0343510:intron | 25.0% |
| ! | TTATCAAGCAAGAAGATATA+TGG | - | chr3_1:1700365-1700384 | Msa0343510:intron | 25.0% |
| ! | TATCAAGCAAGAAGATATAT+GGG | - | chr3_1:1700366-1700385 | Msa0343510:intron | 25.0% |
| ! | TGACTATCTATTTCATCAAA+AGG | + | chr3_1:1700565-1700584 | None:intergenic | 25.0% |
| ! | TTTGATGAAATAGATAGTCA+AGG | - | chr3_1:1700565-1700584 | Msa0343510:intron | 25.0% |
| ! | ATTGCATTCAATCAATTCAT+CGG | - | chr3_1:1700881-1700900 | Msa0343510:CDS | 25.0% |
| !!! | GGAGAGTTTTTTTCATCATT+TGG | + | chr3_1:1698369-1698388 | None:intergenic | 30.0% |
| ATATGATCGGATTCAAAGAA+GGG | + | chr3_1:1698536-1698555 | None:intergenic | 30.0% | |
| TCAATCAACAAACACAAAAG+GGG | + | chr3_1:1698832-1698851 | None:intergenic | 30.0% | |
| GTTCAATCAACAAACACAAA+AGG | + | chr3_1:1698834-1698853 | None:intergenic | 30.0% | |
| !! | TGTGTTTTTGTTACTACTAG+TGG | - | chr3_1:1698945-1698964 | Msa0343510:CDS | 30.0% |
| AGATGAAAATCCCTTGAAAA+GGG | + | chr3_1:1699102-1699121 | None:intergenic | 30.0% | |
| AAGATGAAAATCCCTTGAAA+AGG | + | chr3_1:1699103-1699122 | None:intergenic | 30.0% | |
| TACAATACAGTTAGCTGTAT+TGG | + | chr3_1:1699248-1699267 | None:intergenic | 30.0% | |
| !!! | ATAATTTGGTTTTTGAGCAC+AGG | - | chr3_1:1699359-1699378 | Msa0343510:CDS | 30.0% |
| !!! | TAATTTGGTTTTTGAGCACA+GGG | - | chr3_1:1699360-1699379 | Msa0343510:CDS | 30.0% |
| ATTGAAAAACTCCCATTTGT+CGG | + | chr3_1:1699403-1699422 | None:intergenic | 30.0% | |
| !! | AAATGGGAGTTTTTCAATGA+AGG | - | chr3_1:1699405-1699424 | Msa0343510:CDS | 30.0% |
| TAACTGTATCTCTAATAGCA+GGG | - | chr3_1:1699684-1699703 | Msa0343510:intron | 30.0% | |
| TGAACAAAGACAGAAACAAA+TGG | - | chr3_1:1699844-1699863 | Msa0343510:CDS | 30.0% | |
| GAAACAAATGGTATCTTTCT+TGG | - | chr3_1:1699856-1699875 | Msa0343510:CDS | 30.0% | |
| ACAAACTTTCTTCTAACTCT+TGG | + | chr3_1:1699953-1699972 | None:intergenic | 30.0% | |
| GAAGAAGAAAATGTCAAAGA+TGG | - | chr3_1:1699989-1700008 | Msa0343510:intron | 30.0% | |
| CTACCTAAAGAAATGACTAA+AGG | - | chr3_1:1700121-1700140 | Msa0343510:intron | 30.0% | |
| TCACCTTTAGTCATTTCTTT+AGG | + | chr3_1:1700127-1700146 | None:intergenic | 30.0% | |
| GAAACTAATATTATTGGCGA+AGG | - | chr3_1:1700226-1700245 | Msa0343510:CDS | 30.0% | |
| TCAGGAATAACTTCTTCATT+TGG | + | chr3_1:1700307-1700326 | None:intergenic | 30.0% | |
| ! | GTTATTCCTGAGAATTTTGA+AGG | - | chr3_1:1700316-1700335 | Msa0343510:intron | 30.0% |
| TTTGAAGGGTTTCAATCTAT+TGG | - | chr3_1:1700331-1700350 | Msa0343510:intron | 30.0% | |
| TTGAAGGGTTTCAATCTATT+GGG | - | chr3_1:1700332-1700351 | Msa0343510:intron | 30.0% | |
| !!! | GATATTGGTTTTGGAAGTTT+GGG | - | chr3_1:1700511-1700530 | Msa0343510:intron | 30.0% |
| !! | GAAGTTTGGGTATTGATAAT+TGG | - | chr3_1:1700524-1700543 | Msa0343510:intron | 30.0% |
| ! | GAATCAAGATTTTCTTAGGT+AGG | + | chr3_1:1700607-1700626 | None:intergenic | 30.0% |
| ! | TTTTGGCAGAAGTTACATTT+CGG | - | chr3_1:1700661-1700680 | Msa0343510:CDS | 30.0% |
| TCGGAGTTTCAATAAAATCA+CGG | - | chr3_1:1700680-1700699 | Msa0343510:CDS | 30.0% | |
| TAGGAACTATAATTGCTCAA+AGG | + | chr3_1:1700757-1700776 | None:intergenic | 30.0% | |
| TTTGAGCAATTATAGTTCCT+AGG | - | chr3_1:1700756-1700775 | Msa0343510:CDS | 30.0% | |
| TTGAGCAATTATAGTTCCTA+GGG | - | chr3_1:1700757-1700776 | Msa0343510:CDS | 30.0% | |
| TATTCAATAATATGTCCCCT+AGG | + | chr3_1:1700776-1700795 | None:intergenic | 30.0% | |
| TTGCATTCAATCAATTCATC+GGG | - | chr3_1:1700882-1700901 | Msa0343510:CDS | 30.0% | |
| ! | GAATATGAAGCATCAGCTAT+AGG | - | chr3_1:1698414-1698433 | Msa0343510:three_prime_UTR | 35.0% |
| ! | TTGAAAGAAATGGTGGAACT+GGG | + | chr3_1:1698491-1698510 | None:intergenic | 35.0% |
| ! | TTTGAAAGAAATGGTGGAAC+TGG | + | chr3_1:1698492-1698511 | None:intergenic | 35.0% |
| GATATGATCGGATTCAAAGA+AGG | + | chr3_1:1698537-1698556 | None:intergenic | 35.0% | |
| CTTTGAATCCGATCATATCA+TGG | - | chr3_1:1698538-1698557 | Msa0343510:three_prime_UTR | 35.0% | |
| TTGGAACTCCATGATATGAT+CGG | + | chr3_1:1698549-1698568 | None:intergenic | 35.0% | |
| ATCATATCATGGAGTTCCAA+TGG | - | chr3_1:1698549-1698568 | Msa0343510:three_prime_UTR | 35.0% | |
| AACAACAAAGCTAACACCAT+TGG | + | chr3_1:1698568-1698587 | None:intergenic | 35.0% | |
| !! | ATGGTGTTAGCTTTGTTGTT+TGG | - | chr3_1:1698568-1698587 | Msa0343510:three_prime_UTR | 35.0% |
| !! | TGGTGTTAGCTTTGTTGTTT+GGG | - | chr3_1:1698569-1698588 | Msa0343510:three_prime_UTR | 35.0% |
| ATAACTCTTGCAAACTCCAA+AGG | + | chr3_1:1698597-1698616 | None:intergenic | 35.0% | |
| ! | TTGTTGTGTTTGAAGTGTCT+AGG | + | chr3_1:1698624-1698643 | None:intergenic | 35.0% |
| ATTAAGCTGACGAACAAAAC+TGG | + | chr3_1:1698652-1698671 | None:intergenic | 35.0% | |
| TCGTCAGCTTAATACTTATG+TGG | - | chr3_1:1698659-1698678 | Msa0343510:three_prime_UTR | 35.0% | |
| CGTCAGCTTAATACTTATGT+GGG | - | chr3_1:1698660-1698679 | Msa0343510:three_prime_UTR | 35.0% | |
| ! | ACTTTTCACAATGCCTCTAA+TGG | - | chr3_1:1698710-1698729 | Msa0343510:CDS | 35.0% |
| CAATCAACAAACACAAAAGG+GGG | + | chr3_1:1698831-1698850 | None:intergenic | 35.0% | |
| ACTACACAATGCAATCAATC+AGG | + | chr3_1:1699021-1699040 | None:intergenic | 35.0% | |
| ! | AAGGGATTTTCATCTTTCCA+AGG | - | chr3_1:1699107-1699126 | Msa0343510:CDS | 35.0% |
| ! | GATTTTCATCTTTCCAAGGT+AGG | - | chr3_1:1699111-1699130 | Msa0343510:CDS | 35.0% |
| !!! | ATTTGTCGGTGTCAATTTTG+CGG | + | chr3_1:1699389-1699408 | None:intergenic | 35.0% |
| CAAAATTGACACCGACAAAT+GGG | - | chr3_1:1699389-1699408 | Msa0343510:CDS | 35.0% | |
| TTCAATGAAGGTTTCCAGAA+AGG | - | chr3_1:1699417-1699436 | Msa0343510:CDS | 35.0% | |
| TCAATGAAGGTTTCCAGAAA+GGG | - | chr3_1:1699418-1699437 | Msa0343510:CDS | 35.0% | |
| !! | ACTTACTGAAGAGCATTCAA+AGG | - | chr3_1:1699448-1699467 | Msa0343510:CDS | 35.0% |
| CTAACTGTATCTCTAATAGC+AGG | - | chr3_1:1699683-1699702 | Msa0343510:intron | 35.0% | |
| AGGTTGAGATTGAAAGATTG+AGG | - | chr3_1:1699720-1699739 | Msa0343510:intron | 35.0% | |
| TGAGATTGAAAGATTGAGGA+AGG | - | chr3_1:1699724-1699743 | Msa0343510:intron | 35.0% | |
| TCAAAGATGGAAAGATAGTG+AGG | - | chr3_1:1700002-1700021 | Msa0343510:intron | 35.0% | |
| ATGTCTATATTCCCCCAATT+TGG | + | chr3_1:1700034-1700053 | None:intergenic | 35.0% | |
| ! | ATAGTGAGGAGAGTTTTCAA+TGG | + | chr3_1:1700089-1700108 | None:intergenic | 35.0% |
| AGATCAAGTGAAAGATAGTG+AGG | + | chr3_1:1700103-1700122 | None:intergenic | 35.0% | |
| TGAAACCCTTCAAAATTCTC+AGG | + | chr3_1:1700325-1700344 | None:intergenic | 35.0% | |
| ATGTGGGATCCTTTGAATTA+TGG | - | chr3_1:1700439-1700458 | Msa0343510:intron | 35.0% | |
| TCAGGTACTCCATAATTCAA+AGG | + | chr3_1:1700451-1700470 | None:intergenic | 35.0% | |
| ! | AATTATGGAGTACCTGACTT+TGG | - | chr3_1:1700454-1700473 | Msa0343510:intron | 35.0% |
| ATGTCAGATATGTGGGATAT+TGG | - | chr3_1:1700496-1700515 | Msa0343510:intron | 35.0% | |
| !!! | GATATGTGGGATATTGGTTT+TGG | - | chr3_1:1700502-1700521 | Msa0343510:intron | 35.0% |
| !!! | GGATATTGGTTTTGGAAGTT+TGG | - | chr3_1:1700510-1700529 | Msa0343510:intron | 35.0% |
| GATGAAATAGATAGTCAAGG+TGG | - | chr3_1:1700568-1700587 | Msa0343510:intron | 35.0% | |
| TGTAACTTCTGCCAAAATCA+TGG | + | chr3_1:1700658-1700677 | None:intergenic | 35.0% | |
| TGAGCAATTATAGTTCCTAG+GGG | - | chr3_1:1700758-1700777 | Msa0343510:CDS | 35.0% | |
| GAAGAGAGTGACAAAAATTG+TGG | + | chr3_1:1700851-1700870 | None:intergenic | 35.0% | |
| ! | TATGAAGCATCAGCTATAGG+TGG | - | chr3_1:1698417-1698436 | Msa0343510:three_prime_UTR | 40.0% |
| !! | CTTTGTTGTTTGGGATCCTT+TGG | - | chr3_1:1698578-1698597 | Msa0343510:three_prime_UTR | 40.0% |
| AGATTAATAGGGGCCATTAG+AGG | + | chr3_1:1698726-1698745 | None:intergenic | 40.0% | |
| ACACAATGCAATCAATCAGG+AGG | + | chr3_1:1699018-1699037 | None:intergenic | 40.0% | |
| ! | AATGTTGCTCTCCCTTTTCA+AGG | - | chr3_1:1699088-1699107 | Msa0343510:CDS | 40.0% |
| ! | ATGTTGCTCTCCCTTTTCAA+GGG | - | chr3_1:1699089-1699108 | Msa0343510:CDS | 40.0% |
| TGAAACACAGAATCCTACCT+TGG | + | chr3_1:1699127-1699146 | None:intergenic | 40.0% | |
| AGACATAGGAGACTCAAGAA+AGG | + | chr3_1:1699322-1699341 | None:intergenic | 40.0% | |
| GCAAAATTGACACCGACAAA+TGG | - | chr3_1:1699388-1699407 | Msa0343510:CDS | 40.0% | |
| !! | CAGCAAGTTGGTAACTATGT+TGG | - | chr3_1:1699489-1699508 | Msa0343510:CDS | 40.0% |
| TCTCTAATAGCAGGGAAATC+TGG | - | chr3_1:1699692-1699711 | Msa0343510:intron | 40.0% | |
| TTGAAAGATTGAGGAAGGAG+AGG | - | chr3_1:1699729-1699748 | Msa0343510:intron | 40.0% | |
| GACTGTGTTAATGCAAGAAG+TGG | - | chr3_1:1699751-1699770 | Msa0343510:intron | 40.0% | |
| ACGCAGGTAATGTGAATCAA+AGG | - | chr3_1:1699810-1699829 | Msa0343510:CDS | 40.0% | |
| !! | GGCCAAGTTGTTTTCAAATC+CGG | - | chr3_1:1699877-1699896 | Msa0343510:CDS | 40.0% |
| GTCCGGATTTGAAAACAACT+TGG | + | chr3_1:1699882-1699901 | None:intergenic | 40.0% | |
| ! | TAGTGAGGTACCAACCAAAT+TGG | - | chr3_1:1700017-1700036 | Msa0343510:intron | 40.0% |
| ! | AGTGAGGTACCAACCAAATT+GGG | - | chr3_1:1700018-1700037 | Msa0343510:intron | 40.0% |
| CTATATTCCCCCAATTTGGT+TGG | + | chr3_1:1700030-1700049 | None:intergenic | 40.0% | |
| ! | GGAGAGTTTTCAATGGAAAC+TGG | + | chr3_1:1700082-1700101 | None:intergenic | 40.0% |
| GATGAATATGCTGCAATGCA+TGG | - | chr3_1:1700184-1700203 | Msa0343510:CDS | 40.0% | |
| ! | CTTGATGAACCCCTTTTCAA+AGG | - | chr3_1:1700265-1700284 | Msa0343510:intron | 40.0% |
| CAGCACCAACATTGAAGTTA+GGG | + | chr3_1:1700393-1700412 | None:intergenic | 40.0% | |
| ACAGCACCAACATTGAAGTT+AGG | + | chr3_1:1700394-1700413 | None:intergenic | 40.0% | |
| ! | CTGTTGCTACTTCAAACTGT+GGG | - | chr3_1:1700410-1700429 | Msa0343510:intron | 40.0% |
| AAACTGTGGGAATGAGATGT+GGG | - | chr3_1:1700423-1700442 | Msa0343510:intron | 40.0% | |
| CTTGTAACAACTCCAAAGTC+AGG | + | chr3_1:1700469-1700488 | None:intergenic | 40.0% | |
| !! | GACTTTGGAGTTGTTACAAG+TGG | - | chr3_1:1700469-1700488 | Msa0343510:intron | 40.0% |
| TGGTGACATGTCAGATATGT+GGG | - | chr3_1:1700489-1700508 | Msa0343510:intron | 40.0% | |
| TCAAAAGGAGATTCATCAGC+TGG | + | chr3_1:1700550-1700569 | None:intergenic | 40.0% | |
| TGCTCAAAGGCAACAATTGT+AGG | + | chr3_1:1700744-1700763 | None:intergenic | 40.0% | |
| CATTCAATCAATTCATCGGG+TGG | - | chr3_1:1700885-1700904 | Msa0343510:CDS | 40.0% | |
| TAGTGATGTTCCTGTGCCTA+TGG | - | chr3_1:1698449-1698468 | Msa0343510:three_prime_UTR | 45.0% | |
| CTCATCTGCAAACACTCCAT+AGG | + | chr3_1:1698468-1698487 | None:intergenic | 45.0% | |
| ACAAACACAAAAGGGGGAGA+GGG | + | chr3_1:1698825-1698844 | None:intergenic | 45.0% | |
| AACAAACACAAAAGGGGGAG+AGG | + | chr3_1:1698826-1698845 | None:intergenic | 45.0% | |
| ATGTTGCCAATTCCAGCAGT+AGG | + | chr3_1:1699061-1699080 | None:intergenic | 45.0% | |
| ACTGCTGGAATTGGCAACAT+AGG | - | chr3_1:1699061-1699080 | Msa0343510:CDS | 45.0% | |
| GTAAGTGCTTCTTCCCTTTC+TGG | + | chr3_1:1699434-1699453 | None:intergenic | 45.0% | |
| ACGTCTCAATCTCAGCAAGT+TGG | - | chr3_1:1699477-1699496 | Msa0343510:CDS | 45.0% | |
| GTTGGATCTTCTTCTGATGC+AGG | - | chr3_1:1699507-1699526 | Msa0343510:CDS | 45.0% | |
| ACAGCAGCAACAACGAATGA+CGG | - | chr3_1:1699781-1699800 | Msa0343510:intron | 45.0% | |
| TTGAGTCGCGCTAAAAAGTC+CGG | + | chr3_1:1699899-1699918 | None:intergenic | 45.0% | |
| ! | GTGAGGTACCAACCAAATTG+GGG | - | chr3_1:1700019-1700038 | Msa0343510:intron | 45.0% |
| ! | TGAGGTACCAACCAAATTGG+GGG | - | chr3_1:1700020-1700039 | Msa0343510:intron | 45.0% |
| !! | GGCGAAGGATCATCTAGTTT+TGG | - | chr3_1:1700241-1700260 | Msa0343510:intron | 45.0% |
| TGGGACCCTAACTTCAATGT+TGG | - | chr3_1:1700385-1700404 | Msa0343510:intron | 45.0% | |
| ! | GCTGTTGCTACTTCAAACTG+TGG | - | chr3_1:1700409-1700428 | Msa0343510:intron | 45.0% |
| CAAACTGTGGGAATGAGATG+TGG | - | chr3_1:1700422-1700441 | Msa0343510:intron | 45.0% | |
| GTGGTGACATGTCAGATATG+TGG | - | chr3_1:1700488-1700507 | Msa0343510:intron | 45.0% | |
| AAGTTTGGCAGAATCACGAC+CGG | - | chr3_1:1700629-1700648 | Msa0343510:intron | 45.0% | |
| TCTGCCAAAATCATGGAAGC+CGG | + | chr3_1:1700651-1700670 | None:intergenic | 45.0% | |
| !!! | TATTTTTTCTTTTTTTTTTT+TGG | - | chr3_1:1698768-1698787 | Msa0343510:CDS | 5.0% |
| ! | GAAGCATCAGCTATAGGTGG+TGG | - | chr3_1:1698420-1698439 | Msa0343510:three_prime_UTR | 50.0% |
| ! | TCAGCTATAGGTGGTGGTAC+TGG | - | chr3_1:1698426-1698445 | Msa0343510:three_prime_UTR | 50.0% |
| TGCAAACACTCCATAGGCAC+AGG | + | chr3_1:1698462-1698481 | None:intergenic | 50.0% | |
| CATTCAGAGACTCCTACTGC+TGG | - | chr3_1:1699046-1699065 | Msa0343510:CDS | 50.0% | |
| GAGACTCCTACTGCTGGAAT+TGG | - | chr3_1:1699052-1699071 | Msa0343510:CDS | 50.0% | |
| !! | TGAAGAGCATTCAAAGGCGC+CGG | - | chr3_1:1699454-1699473 | Msa0343510:CDS | 50.0% |
| CTTGCTGAGATTGAGACGTC+CGG | + | chr3_1:1699476-1699495 | None:intergenic | 50.0% | |
| !! | ACGACCGGCTTCCATGATTT+TGG | - | chr3_1:1700644-1700663 | Msa0343510:CDS | 50.0% |
| ! | AGCAGGGAAATCTGGAGTCG+AGG | - | chr3_1:1699700-1699719 | Msa0343510:intron | 55.0% |
| ! | CGAATGACGGCTAGTCACGC+AGG | - | chr3_1:1699794-1699813 | Msa0343510:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 1698360 | 1700951 | 1698360 | ID=Msa0343510;Name=Msa0343510 |
| chr3_1 | mRNA | 1698360 | 1700951 | 1698360 | ID=Msa0343510-mRNA-1;Parent=Msa0343510;Name=Msa0343510-mRNA-1;_AED=0.04;_eAED=0.07;_QI=0|0.25|0.4|1|1|1|5|339|496 |
| chr3_1 | exon | 1698360 | 1699606 | 1698360 | ID=Msa0343510-mRNA-1:exon:571;Parent=Msa0343510-mRNA-1 |
| chr3_1 | exon | 1699783 | 1699930 | 1699783 | ID=Msa0343510-mRNA-1:exon:570;Parent=Msa0343510-mRNA-1 |
| chr3_1 | exon | 1700040 | 1700076 | 1700040 | ID=Msa0343510-mRNA-1:exon:569;Parent=Msa0343510-mRNA-1 |
| chr3_1 | exon | 1700183 | 1700258 | 1700183 | ID=Msa0343510-mRNA-1:exon:568;Parent=Msa0343510-mRNA-1 |
| chr3_1 | exon | 1700630 | 1700951 | 1700630 | ID=Msa0343510-mRNA-1:exon:567;Parent=Msa0343510-mRNA-1 |
| chr3_1 | CDS | 1700630 | 1700951 | 1700630 | ID=Msa0343510-mRNA-1:cds;Parent=Msa0343510-mRNA-1 |
| chr3_1 | CDS | 1700183 | 1700258 | 1700183 | ID=Msa0343510-mRNA-1:cds;Parent=Msa0343510-mRNA-1 |
| chr3_1 | CDS | 1700040 | 1700076 | 1700040 | ID=Msa0343510-mRNA-1:cds;Parent=Msa0343510-mRNA-1 |
| chr3_1 | CDS | 1699783 | 1699930 | 1699783 | ID=Msa0343510-mRNA-1:cds;Parent=Msa0343510-mRNA-1 |
| chr3_1 | CDS | 1698699 | 1699606 | 1698699 | ID=Msa0343510-mRNA-1:cds;Parent=Msa0343510-mRNA-1 |
| chr3_1 | three_prime_UTR | 1698360 | 1698698 | 1698360 | ID=Msa0343510-mRNA-1:three_prime_utr;Parent=Msa0343510-mRNA-1 |
| Gene Sequence |
| Protein sequence |
