AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0472290

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0472290 MtrunA17_Chr3g0127941 93.084 694 13 4 1 669 1 684 0.0 1321
Msa0472290 MtrunA17_Chr7g0276361 38.073 633 314 17 47 657 7 583 6.93e-105 331
Msa0472290 MtrunA17_Chr8g0345901 39.075 389 182 11 41 399 23 386 2.28e-66 230
Msa0472290 MtrunA17_Chr4g0030271 58.015 131 55 0 45 175 80 210 2.35e-48 182
Msa0472290 MtrunA17_Chr4g0030271 76.000 50 12 0 608 657 714 763 1.24e-17 87.4
Msa0472290 MtrunA17_Chr3g0091641 45.038 131 72 0 48 178 18 148 3.71e-30 125
Msa0472290 MtrunA17_Chr3g0091641 68.889 45 14 0 615 659 498 542 1.23e-12 70.9
Msa0472290 MtrunA17_Chr4g0061021 40.645 155 80 2 28 181 18 161 8.53e-30 124
Msa0472290 MtrunA17_Chr4g0061021 73.333 45 12 0 615 659 505 549 3.81e-14 75.9
Msa0472290 MtrunA17_Chr1g0161431 42.276 123 66 2 54 175 15 133 5.31e-24 107
Msa0472290 MtrunA17_Chr3g0123131 41.129 124 68 2 54 176 17 136 1.57e-23 105
Msa0472290 MtrunA17_Chr2g0304841 37.903 124 72 2 54 176 22 141 2.35e-23 105
Msa0472290 MtrunA17_Chr4g0074411 37.903 124 72 2 54 176 22 141 1.24e-22 102
Msa0472290 MtrunA17_Chr3g0137101 37.097 124 73 2 54 176 12 131 3.77e-22 101
Msa0472290 MtrunA17_Chr4g0067981 39.516 124 70 2 54 176 35 154 9.67e-22 100
Msa0472290 MtrunA17_Chr2g0294911 39.516 124 70 2 54 176 33 152 2.17e-21 99.0
Msa0472290 MtrunA17_Chr4g0074401 37.097 124 73 2 54 176 21 140 2.26e-21 98.6
Msa0472290 MtrunA17_Chr8g0376881 33.523 176 102 5 54 224 29 194 3.56e-21 97.8
Msa0472290 MtrunA17_Chr1g0149841 36.290 124 74 2 54 176 9 128 6.23e-21 96.7
Msa0472290 MtrunA17_Chr3g0134481 37.500 136 75 3 54 188 12 138 1.94e-20 89.7
Msa0472290 MtrunA17_Chr1g0149851 36.290 124 74 2 54 176 9 128 1.00e-19 93.2
Msa0472290 MtrunA17_Chr7g0275401 33.871 124 77 2 54 176 9 128 8.80e-18 84.3
Msa0472290 MtrunA17_Chr7g0275891 33.600 125 77 3 54 176 9 129 1.73e-16 81.6
Msa0472290 MtrunA17_Chr7g0256551 29.496 139 80 2 54 174 9 147 1.30e-15 77.0
Msa0472290 MtrunA17_Chr1g0170741 29.630 135 83 1 54 176 8 142 2.30e-14 72.4
Msa0472290 MtrunA17_Chr3g0134461 34.677 124 77 2 54 176 12 132 2.54e-14 72.0
Msa0472290 MtrunA17_Chr4g0059571 30.000 130 82 1 54 174 26 155 5.18e-14 71.6
Msa0472290 MtrunA17_Chr3g0118211 30.986 142 87 3 54 184 23 164 1.09e-13 70.5
Msa0472290 MtrunA17_Chr5g0414931 29.412 136 83 2 54 176 16 151 1.40e-13 70.9
Msa0472290 MtrunA17_Chr1g0181811 28.902 346 176 14 363 657 410 736 1.91e-13 73.9
Msa0472290 MtrunA17_Chr4g0074421 41.558 77 40 2 101 176 3 75 3.37e-13 68.9
Msa0472290 MtrunA17_Chr4g0054981 33.333 132 79 4 42 172 8 131 4.16e-13 72.4
Msa0472290 MtrunA17_Chr3g0082861 29.078 141 82 2 54 176 4 144 2.78e-12 65.5
Msa0472290 MtrunA17_Chr3g0128691 31.746 126 71 3 56 168 20 143 8.90e-12 63.9
Msa0472290 MtrunA17_Chr5g0400241 31.061 132 82 4 42 172 8 131 9.47e-12 68.2
Msa0472290 MtrunA17_Chr3g0136701 49.231 65 32 1 602 665 219 283 1.18e-11 66.2
Msa0472290 MtrunA17_Chr8g0352871 28.261 138 82 2 54 174 9 146 1.81e-11 63.5
Msa0472290 MtrunA17_Chr1g0149831 43.478 69 34 2 109 176 1 65 4.17e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0472290 AT5G24470.1 41.215 461 176 13 39 474 35 425 1.40e-90 293
Msa0472290 AT5G24470.1 68.657 67 11 2 597 657 489 551 1.48e-18 90.1
Msa0472290 AT2G46790.3 72.993 137 37 0 42 178 25 161 1.55e-68 231
Msa0472290 AT2G46790.1 72.993 137 37 0 42 178 25 161 2.83e-68 231
Msa0472290 AT2G46790.1 81.250 48 9 0 615 662 417 464 1.01e-17 87.0
Msa0472290 AT5G60100.7 60.448 134 53 0 42 175 52 185 6.33e-52 185
Msa0472290 AT5G60100.6 60.448 134 53 0 42 175 52 185 6.33e-52 185
Msa0472290 AT5G60100.4 60.448 134 53 0 42 175 52 185 6.33e-52 185
Msa0472290 AT5G60100.5 60.448 134 53 0 42 175 52 185 1.85e-51 186
Msa0472290 AT5G60100.5 69.841 63 18 1 606 668 433 494 3.09e-17 85.5
Msa0472290 AT5G60100.3 60.448 134 53 0 42 175 52 185 1.85e-51 186
Msa0472290 AT5G60100.3 69.841 63 18 1 606 668 433 494 3.09e-17 85.5
Msa0472290 AT5G60100.1 60.448 134 53 0 42 175 52 185 1.85e-51 186
Msa0472290 AT5G60100.1 69.841 63 18 1 606 668 433 494 3.09e-17 85.5
Msa0472290 AT5G60100.2 59.155 142 57 1 42 182 52 193 8.39e-51 185
Msa0472290 AT5G60100.2 69.841 63 18 1 606 668 460 521 4.48e-17 85.1
Msa0472290 AT5G02810.1 49.153 177 79 2 10 175 23 199 9.98e-48 179
Msa0472290 AT5G02810.1 83.721 43 7 0 615 657 669 711 1.37e-15 81.3
Msa0472290 AT5G61380.1 42.958 142 78 1 37 178 5 143 1.77e-29 124
Msa0472290 AT5G61380.1 68.889 45 14 0 615 659 533 577 1.17e-12 71.6
Msa0472290 AT2G25180.1 34.272 213 122 5 54 265 17 212 3.34e-24 107
Msa0472290 AT4G31920.1 40.164 122 68 2 54 174 17 134 1.30e-22 102
Msa0472290 AT3G16857.2 38.194 144 78 4 34 176 23 156 1.12e-21 100
Msa0472290 AT3G16857.1 38.194 144 78 4 34 176 23 156 1.21e-21 100
Msa0472290 AT2G01760.1 40.945 127 69 2 54 178 11 133 5.62e-21 95.9
Msa0472290 AT1G67710.1 38.710 124 71 2 54 176 11 130 3.14e-20 95.1
Msa0472290 AT2G46670.1 81.250 48 9 0 615 662 132 179 3.62e-19 86.3
Msa0472290 AT2G46790.5 81.250 48 9 0 615 662 260 307 2.87e-18 86.7
Msa0472290 AT2G46790.4 81.250 48 9 0 615 662 260 307 2.87e-18 86.7
Msa0472290 AT5G58080.1 34.848 132 80 2 44 175 10 135 2.99e-18 89.4
Msa0472290 AT2G46790.2 81.250 48 9 0 615 662 300 347 6.16e-18 86.3
Msa0472290 AT2G46790.2 80.488 41 8 0 135 175 1 41 4.56e-17 83.6
Msa0472290 AT2G01760.2 37.324 142 73 5 48 178 25 161 4.36e-17 84.3
Msa0472290 AT5G02810.2 83.721 43 7 0 615 657 525 567 9.61e-16 81.3
Msa0472290 AT5G02810.2 54.237 59 23 1 117 175 1 55 2.18e-13 73.9
Msa0472290 AT3G16857.3 40.449 89 48 2 89 176 2 86 2.45e-15 80.1
Msa0472290 AT1G19050.1 30.827 133 83 2 54 177 24 156 8.41e-15 74.3
Msa0472290 AT1G10470.3 32.031 128 78 1 56 174 22 149 2.37e-14 73.9
Msa0472290 AT1G59940.1 32.331 133 81 1 56 179 35 167 2.42e-14 73.6
Msa0472290 AT1G10470.1 32.031 128 78 1 56 174 36 163 2.67e-14 73.9
Msa0472290 AT1G59940.2 32.331 133 81 1 56 179 127 259 7.21e-14 73.6
Msa0472290 AT3G48100.1 33.333 129 75 3 50 168 22 149 2.10e-13 69.7
Msa0472290 AT3G57040.2 28.571 140 81 1 54 174 9 148 2.66e-13 70.5
Msa0472290 AT3G57040.1 28.571 140 81 1 54 174 9 148 2.66e-13 70.5
Msa0472290 AT1G74890.1 30.000 130 82 1 54 174 18 147 4.11e-13 69.3
Msa0472290 AT3G62670.1 28.649 185 110 5 46 226 34 200 5.30e-13 72.0
Msa0472290 AT5G62920.1 29.286 140 90 1 38 168 9 148 5.74e-13 68.6
Msa0472290 AT2G41310.1 30.882 136 77 2 56 174 11 146 8.49e-13 68.9
Msa0472290 AT2G01760.3 47.222 72 32 2 109 178 1 68 9.76e-12 67.0
Msa0472290 AT5G49240.1 34.146 123 76 2 54 175 42 160 1.24e-11 66.6
Msa0472290 AT3G56380.1 28.358 134 86 2 54 177 20 153 1.30e-11 63.5
Msa0472290 AT1G49190.2 28.226 124 84 2 56 178 36 155 2.03e-11 67.8
Msa0472290 AT1G49190.1 28.226 124 84 2 56 178 36 155 2.47e-11 66.6

Find 138 sgRNAs with CRISPR-Local

Find 199 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCGAATCCCGATTCTCTTTC+TGG 0.070056 3_3:+74693187 Msa0472290:CDS
TCACCCATGTTGTTGTTTAT+TGG 0.145845 3_3:-74689826 None:intergenic
CGCACTTCTCACATTAATTA+TGG 0.184807 3_3:+74690983 Msa0472290:CDS
TACGAACCTCGCGGTCTAAA+TGG 0.244627 3_3:+74692661 Msa0472290:CDS
TCTCTTCCGATTCCTGTAAA+AGG 0.269959 3_3:+74692469 Msa0472290:CDS
GAGCAGCGTCCTCGAGTTAA+AGG 0.270096 3_3:+74693148 Msa0472290:CDS
CAAGAACTTGACATTCATTT+AGG 0.270340 3_3:+74691583 Msa0472290:CDS
TCCAGTAGTATTTGTAATAA+TGG 0.285223 3_3:+74692781 Msa0472290:CDS
GGAATTTGTGGCAGCATGTT+TGG 0.301229 3_3:+74691231 Msa0472290:CDS
GCCGCAACCGCTGGCATAAA+TGG 0.311050 3_3:+74691385 Msa0472290:CDS
TAAAATTACAACTGTATATC+AGG 0.322906 3_3:-74693416 None:intergenic
GCCATTTATGCCAGCGGTTG+CGG 0.331299 3_3:-74691386 None:intergenic
TATACGCTGATTCTTGTCTT+TGG 0.341859 3_3:+74689801 Msa0472290:five_prime_UTR
TGCTGTTGCTGATGGCTTGA+AGG 0.353593 3_3:+74690881 Msa0472290:CDS
TGCTTGCATTCAAAGAAATA+AGG 0.359592 3_3:+74691492 Msa0472290:CDS
AAGGAAGCTATTGACTTGAT+TGG 0.361168 3_3:+74691896 Msa0472290:CDS
ACCAATGCTGGTAAAATTGC+TGG 0.363758 3_3:-74692809 None:intergenic
GTTCCTGTGTATACACAATT+TGG 0.365801 3_3:-74692699 None:intergenic
GTATTGAACTATCTGAGTTA+TGG 0.368410 3_3:-74692393 None:intergenic
GTGTATCACTTTCATCTTGA+GGG 0.373515 3_3:-74691408 None:intergenic
CTTAGAAAATGCAACTATAA+AGG 0.375160 3_3:+74690057 Msa0472290:CDS
TTCGAGGAACACAACTGAAC+CGG 0.382827 3_3:-74692575 None:intergenic
GAGATCCTTCTCAAAGTTGC+TGG 0.389986 3_3:-74692026 None:intergenic
TGTGTATACACAATTTGGTT+TGG 0.392077 3_3:-74692694 None:intergenic
ACAACTGAACCGGGCATTGA+TGG 0.393075 3_3:-74692565 None:intergenic
GATACACTTTGATCAGTTGT+AGG 0.394686 3_3:-74692760 None:intergenic
TCCATTATTACAAATACTAC+TGG 0.397236 3_3:-74692782 None:intergenic
GTTGTTATTAAATATATATC+AGG 0.402264 3_3:-74693394 None:intergenic
CAGAACAGCAGCAGTTTCAG+AGG 0.404213 3_3:+74692882 Msa0472290:CDS
GAGAAGGTGAGGGAAGAAGA+AGG 0.408178 3_3:+74689895 Msa0472290:CDS
CTTAGTTCATTTATTCGAAT+CGG 0.408502 3_3:-74691209 None:intergenic
GAGAGTAGAGGAGGAGGTGG+TGG 0.412031 3_3:+74689928 Msa0472290:CDS
CATAAGGGTGTGCCTTTCTT+CGG 0.412245 3_3:-74692050 None:intergenic
TCAAATTTACTCTACTACTA+AGG 0.413508 3_3:+74691877 Msa0472290:CDS
GAGAAGTGCGTAGCCGGATA+TGG 0.417405 3_3:-74690970 None:intergenic
TGTCCTGCGCGATCACTGCC+TGG 0.417920 3_3:-74691606 None:intergenic
TTAGCAAATATGTGACTTAG+TGG 0.423094 3_3:+74693243 Msa0472290:three_prime_UTR
AGCGTATAGCATCAGAATCT+TGG 0.428632 3_3:-74689786 None:intergenic
CTGAAGCATTGGAATGCATA+AGG 0.429243 3_3:-74692066 None:intergenic
AATGATCTTTGTATGGCCTA+TGG 0.430478 3_3:+74692502 Msa0472290:CDS
GTCGATTTGCCAGCCATATC+CGG 0.434584 3_3:+74690957 Msa0472290:CDS
CGATTCCTGTAAAAGGTGTA+AGG 0.438701 3_3:+74692476 Msa0472290:CDS
CCAGAAAGAGAATCGGGATT+CGG 0.439697 3_3:-74693187 None:intergenic
TTCAATATCATACTTATGAC+AGG 0.442500 3_3:-74691029 None:intergenic
TCTTGTGTCTTTATTTCACT+TGG 0.446311 3_3:-74691565 None:intergenic
GCAGTTGCTGCTGTTGCTGA+TGG 0.454486 3_3:+74690873 Msa0472290:intron
AGAGAGATGTTATGAAAAGA+AGG 0.455803 3_3:+74692993 Msa0472290:CDS
ACTGAGAGTAGAGGAGGAGG+TGG 0.456827 3_3:+74689925 Msa0472290:CDS
CCAGGGTTTCGTACACAATC+AGG 0.457218 3_3:+74692538 Msa0472290:CDS
AATAAGGACTTAATTGAGAA+AGG 0.462433 3_3:+74691508 Msa0472290:CDS
AAGGTTAAATGATCTTTGTA+TGG 0.462879 3_3:+74692495 Msa0472290:CDS
CAGCAGTCAGCCGCAACCGC+TGG 0.465375 3_3:+74691376 Msa0472290:intron
GTGAAATGAAAGGGCTTATG+AGG 0.465706 3_3:+74689950 Msa0472290:CDS
GTTTGACCATTCTCCACAGT+TGG 0.467281 3_3:+74691979 Msa0472290:CDS
TTGCTGATGGCTTGAAGGCA+TGG 0.467739 3_3:+74690886 Msa0472290:CDS
GGAACTGAGAGTAGAGGAGG+AGG 0.470255 3_3:+74689922 Msa0472290:CDS
ATTCATGCAGGTATACAAAC+AGG 0.476773 3_3:+74692296 Msa0472290:intron
TAAATGAACTAAGGAATTTG+TGG 0.487302 3_3:+74691219 Msa0472290:CDS
ATACACTTTGATCAGTTGTA+GGG 0.491753 3_3:-74692759 None:intergenic
GGAGGTGGTGGTGAAATGAA+AGG 0.495607 3_3:+74689940 Msa0472290:CDS
GAGAAGTTAATTACTACTGC+AGG 0.495962 3_3:-74692334 None:intergenic
AGTGGAAGAAGAAGAAGAGA+AGG 0.496753 3_3:+74689879 Msa0472290:CDS
TGCTGATGGCTTGAAGGCAT+GGG 0.496945 3_3:+74690887 Msa0472290:CDS
AATTCATCAATTGATTGCAC+AGG 0.498212 3_3:+74691953 Msa0472290:CDS
CCGTTTGAAAGCTGAAGCAT+TGG 0.498244 3_3:-74692077 None:intergenic
TAATGTGAGAAGTGCGTAGC+CGG 0.502440 3_3:-74690976 None:intergenic
AGAAGGTGAGGGAAGAAGAA+GGG 0.503650 3_3:+74689896 Msa0472290:CDS
GTGAGGGAAGAAGAAGGGAG+TGG 0.503857 3_3:+74689901 Msa0472290:CDS
TGGTGAGAAAATAGTGAGAG+TGG 0.512691 3_3:+74689861 Msa0472290:CDS
CCAATGCTTCAGCTTTCAAA+CGG 0.514454 3_3:+74692077 Msa0472290:CDS
GGAACACAAGTCAGAACATC+CGG 0.514906 3_3:+74692717 Msa0472290:CDS
ATTACTTCCATAACCAATGC+TGG 0.523079 3_3:-74692821 None:intergenic
AATGAAAGGGCTTATGAGGT+GGG 0.528311 3_3:+74689954 Msa0472290:CDS
TGAAGCATTGGAATGCATAA+GGG 0.528347 3_3:-74692065 None:intergenic
TGTGTATCACTTTCATCTTG+AGG 0.529215 3_3:-74691409 None:intergenic
GAGATAAGTCTTTGATCCTC+CGG 0.529482 3_3:-74692736 None:intergenic
AGTGCGTAGCCGGATATGGC+TGG 0.534736 3_3:-74690966 None:intergenic
AGTGGAACTGAGAGTAGAGG+AGG 0.535060 3_3:+74689919 Msa0472290:CDS
AAAGATCCAACTGTGGAGAA+TGG 0.536900 3_3:-74691985 None:intergenic
TGGTGGAAGTGTTGAACCAT+AGG 0.536921 3_3:-74692518 None:intergenic
TTCTGATATTTAAGAAGTCA+AGG 0.543301 3_3:-74693313 None:intergenic
GGGAGTGGAACTGAGAGTAG+AGG 0.544569 3_3:+74689916 Msa0472290:CDS
ATTCACATCGAGCTATGCTA+CGG 0.546537 3_3:+74692935 Msa0472290:CDS
CACAGCATATACAGATCAAG+TGG 0.548302 3_3:-74693336 None:intergenic
AGAAGGATCTCACCGAAGAA+AGG 0.548442 3_3:+74692038 Msa0472290:CDS
AGATCCTTCTCAAAGTTGCT+GGG 0.549454 3_3:-74692025 None:intergenic
AAGAAGAAGAAGAGAAGGTG+AGG 0.553208 3_3:+74689884 Msa0472290:CDS
GAGGTGGTGGTGAAATGAAA+GGG 0.554612 3_3:+74689941 Msa0472290:CDS
AACGCTGCTAGTAATCGTTC+CGG 0.555367 3_3:+74691460 Msa0472290:CDS
TTTAGGAATGCTAGCATCAG+TGG 0.555975 3_3:+74691830 Msa0472290:CDS
AGAAGAAGAAGAGAAGGTGA+GGG 0.557623 3_3:+74689885 Msa0472290:CDS
CGATTCGAATAAATGAACTA+AGG 0.559225 3_3:+74691210 Msa0472290:CDS
AAATGAAAGGGCTTATGAGG+TGG 0.560859 3_3:+74689953 Msa0472290:CDS
TCGAGGAACACAACTGAACC+GGG 0.562948 3_3:-74692574 None:intergenic
ACTTGACATTCATTTAGGCC+AGG 0.566880 3_3:+74691588 Msa0472290:CDS
AGAACAGCAGCAGTTTCAGA+GGG 0.568196 3_3:+74692883 Msa0472290:CDS
CAACTTCACATTCTCAGCAA+GGG 0.576831 3_3:+74692443 Msa0472290:CDS
GCAACTTCACATTCTCAGCA+AGG 0.583947 3_3:+74692442 Msa0472290:CDS
GGATCCAATAAACAACAACA+TGG 0.585441 3_3:+74689822 Msa0472290:exon
TCAGGTCCACCATCAATGCC+CGG 0.589208 3_3:+74692556 Msa0472290:CDS
AGCGCAAATAATTGCAAGGA+CGG 0.590278 3_3:+74691791 Msa0472290:CDS
TCATCCCAGCAACTTTGAGA+AGG 0.593867 3_3:+74692021 Msa0472290:CDS
ACTGAACCGGGCATTGATGG+TGG 0.596008 3_3:-74692562 None:intergenic
ATTGGTTATGGAAGTAATTG+CGG 0.597392 3_3:+74692826 Msa0472290:CDS
TTCACATCGAGCTATGCTAC+GGG 0.598642 3_3:+74692936 Msa0472290:CDS
AAAGAGAATCGGGATTCGGT+TGG 0.599964 3_3:-74693183 None:intergenic
TATGGTTCAACACTTCCACC+AGG 0.607254 3_3:+74692520 Msa0472290:CDS
GACAAGCGCAAATAATTGCA+AGG 0.612224 3_3:+74691787 Msa0472290:CDS
GGAAGTAATTGCGGAAGTAG+CGG 0.613525 3_3:+74692835 Msa0472290:CDS
AATGCAAGCAGCATCACCGC+CGG 0.616301 3_3:-74691479 None:intergenic
ACAAATTGTCCTTTAACTCG+AGG 0.617609 3_3:-74693157 None:intergenic
TTGAGGGCCATTTATGCCAG+CGG 0.618633 3_3:-74691392 None:intergenic
ATCGCGCAGGACAGTCACGC+CGG 0.618782 3_3:+74691616 Msa0472290:CDS
AATAAACAACAACATGGGTG+AGG 0.620435 3_3:+74689828 Msa0472290:exon
TATATCAGGATCTAGAGGAA+AGG 0.621980 3_3:-74693380 None:intergenic
AAATATATATCAGGATCTAG+AGG 0.622685 3_3:-74693385 None:intergenic
CCTGATTGTGTACGAAACCC+TGG 0.626598 3_3:-74692538 None:intergenic
AAGGCATGGGAAATACTCAA+AGG 0.628269 3_3:+74690900 Msa0472290:CDS
TACACTTTGATCAGTTGTAG+GGG 0.630188 3_3:-74692758 None:intergenic
AATGAAGAACTCACAAACAG+TGG 0.636681 3_3:+74692910 Msa0472290:CDS
AAACCAAATTGTGTATACAC+AGG 0.639133 3_3:+74692696 Msa0472290:CDS
GAATGCTAGCATCAGTGGTG+AGG 0.644176 3_3:+74691835 Msa0472290:CDS
GATCCAATAAACAACAACAT+GGG 0.646005 3_3:+74689823 Msa0472290:exon
AGGCCAGGCAGTGATCGCGC+AGG 0.648174 3_3:+74691603 Msa0472290:CDS
GTTTGGAGAAGACAATCAGT+AGG 0.659439 3_3:+74691248 Msa0472290:CDS
GTATACAAATGCATGTTGAG+AGG 0.663604 3_3:+74691164 Msa0472290:CDS
CTGTTTCCATTTAGACCGCG+AGG 0.673170 3_3:-74692667 None:intergenic
ATGGTTCAACACTTCCACCA+GGG 0.675718 3_3:+74692521 Msa0472290:CDS
GCGCAGGACAGTCACGCCGG+AGG 0.678639 3_3:+74691619 Msa0472290:CDS
AAATATGTGACTTAGTGGAG+AGG 0.678737 3_3:+74693248 Msa0472290:three_prime_UTR
GCTGCTAGTAATCGTTCCGG+CGG 0.691660 3_3:+74691463 Msa0472290:CDS
TCAATATCATACTTATGACA+GGG 0.693313 3_3:-74691028 None:intergenic
ATGGGTGAGGTTGTAATGAG+TGG 0.695889 3_3:+74689841 Msa0472290:CDS
CTGAGAGAAAGATCCAACTG+TGG 0.713368 3_3:-74691992 None:intergenic
GAGCAGCTTTACGAACCTCG+CGG 0.732658 3_3:+74692652 Msa0472290:CDS
ACACAAGTCAGAACATCCGG+AGG 0.742561 3_3:+74692720 Msa0472290:CDS
GATTGTGTACGAAACCCTGG+TGG 0.767923 3_3:-74692535 None:intergenic
AGTATCAGATCAATACTGCG+CGG 0.783873 3_3:-74690927 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GTACAATTTTTTTTTTTTTT+TGG + chr3_3:74690256-74690275 Msa0472290:intron 10.0%
!! TAATAATTACAAAAATTAAG+GGG + chr3_3:74690483-74690502 Msa0472290:intron 10.0%
!! TAAGAATTTATTAACAAAAT+TGG + chr3_3:74691321-74691340 Msa0472290:intron 10.0%
!! AAGAATTTATTAACAAAATT+GGG + chr3_3:74691322-74691341 Msa0472290:intron 10.0%
!!! ATTATTGAGTTTTATTATCT+TGG + chr3_3:74690764-74690783 Msa0472290:intron 15.0%
!!! TTGAACAAACTTTTATTTTT+AGG + chr3_3:74691704-74691723 Msa0472290:intron 15.0%
!! CGAAAAAATTAGAATAAAAA+GGG - chr3_3:74692115-74692134 None:intergenic 15.0%
!! ACGAAAAAATTAGAATAAAA+AGG - chr3_3:74692116-74692135 None:intergenic 15.0%
!!! ACTTATTTATACTTTTTAAC+AGG + chr3_3:74693096-74693115 Msa0472290:intron 15.0%
!!! GTTGTTATTAAATATATATC+AGG - chr3_3:74693397-74693416 None:intergenic 15.0%
!! GTAAATATTAGGTTATATTG+AGG + chr3_3:74690302-74690321 Msa0472290:intron 20.0%
!! ATTAGAAATTTAGAAGTCTT+TGG + chr3_3:74690395-74690414 Msa0472290:intron 20.0%
!! TAAAATTACAACTGTATATC+AGG - chr3_3:74693419-74693438 None:intergenic 20.0%
! CTTAGAAAATGCAACTATAA+AGG + chr3_3:74690057-74690076 Msa0472290:CDS 25.0%
! AATATTGCTGTGTGTTTAAT+TGG + chr3_3:74690132-74690151 Msa0472290:intron 25.0%
! AATTACAAAAATTAAGGGGA+TGG + chr3_3:74690487-74690506 Msa0472290:intron 25.0%
!!! TTTTTTAAAGAGAAGTGACA+TGG + chr3_3:74690611-74690630 Msa0472290:intron 25.0%
! GAATAATTGTACCAAGTTTA+TGG - chr3_3:74690717-74690736 None:intergenic 25.0%
! TAGAACTTAGATTTACTTTC+AGG - chr3_3:74690823-74690842 None:intergenic 25.0%
! TCAATATCATACTTATGACA+GGG - chr3_3:74691031-74691050 None:intergenic 25.0%
! TTCAATATCATACTTATGAC+AGG - chr3_3:74691032-74691051 None:intergenic 25.0%
! CTTAGTTCATTTATTCGAAT+CGG - chr3_3:74691212-74691231 None:intergenic 25.0%
! TAAATGAACTAAGGAATTTG+TGG + chr3_3:74691219-74691238 Msa0472290:CDS 25.0%
! AATAAGGACTTAATTGAGAA+AGG + chr3_3:74691508-74691527 Msa0472290:CDS 25.0%
!!! TTTATTTTTAGGATTAAGCG+TGG + chr3_3:74691715-74691734 Msa0472290:intron 25.0%
! AGCACAAATAACTGTAAAAA+TGG + chr3_3:74691761-74691780 Msa0472290:CDS 25.0%
! TCAAATTTACTCTACTACTA+AGG + chr3_3:74691877-74691896 Msa0472290:CDS 25.0%
! AAGAACTTCAAAACATGATA+CGG + chr3_3:74692179-74692198 Msa0472290:intron 25.0%
! AAGGTTAAATGATCTTTGTA+TGG + chr3_3:74692495-74692514 Msa0472290:CDS 25.0%
! TCCAGTAGTATTTGTAATAA+TGG + chr3_3:74692781-74692800 Msa0472290:CDS 25.0%
! TCCATTATTACAAATACTAC+TGG - chr3_3:74692785-74692804 None:intergenic 25.0%
! TTCTGATATTTAAGAAGTCA+AGG - chr3_3:74693316-74693335 None:intergenic 25.0%
! AAATATATATCAGGATCTAG+AGG - chr3_3:74693388-74693407 None:intergenic 25.0%
GATCCAATAAACAACAACAT+GGG + chr3_3:74689823-74689842 Msa0472290:exon 30.0%
! TTTTGTTAGCTGAGAATCTT+AGG + chr3_3:74690635-74690654 Msa0472290:intron 30.0%
TGCTATAAGACTCTATTTCA+AGG - chr3_3:74690672-74690691 None:intergenic 30.0%
! AATAGAGTCTTATAGCAGTA+TGG + chr3_3:74690675-74690694 Msa0472290:intron 30.0%
ATAGCAGTATGGAAATTACT+AGG + chr3_3:74690686-74690705 Msa0472290:intron 30.0%
CGATTCGAATAAATGAACTA+AGG + chr3_3:74691210-74691229 Msa0472290:CDS 30.0%
TGCTTGCATTCAAAGAAATA+AGG + chr3_3:74691492-74691511 Msa0472290:CDS 30.0%
! TCTTGTGTCTTTATTTCACT+TGG - chr3_3:74691568-74691587 None:intergenic 30.0%
CAAGAACTTGACATTCATTT+AGG + chr3_3:74691583-74691602 Msa0472290:CDS 30.0%
GAAAGAAAGAAATTTACCTC+CGG - chr3_3:74691638-74691657 None:intergenic 30.0%
!!! GAATTTTTGAGACTGCAATT+CGG - chr3_3:74691938-74691957 None:intergenic 30.0%
AATTCATCAATTGATTGCAC+AGG + chr3_3:74691953-74691972 Msa0472290:CDS 30.0%
! GTGTATGATTTTTATGCTTG+TGG + chr3_3:74692215-74692234 Msa0472290:intron 30.0%
GTATTGAACTATCTGAGTTA+TGG - chr3_3:74692396-74692415 None:intergenic 30.0%
! TCAGATTCTTTTTGCATACT+TGG - chr3_3:74692418-74692437 None:intergenic 30.0%
! TTTAACCTTACACCTTTTAC+AGG - chr3_3:74692484-74692503 None:intergenic 30.0%
TGTGTATACACAATTTGGTT+TGG - chr3_3:74692697-74692716 None:intergenic 30.0%
AAACCAAATTGTGTATACAC+AGG + chr3_3:74692696-74692715 Msa0472290:CDS 30.0%
ATACACTTTGATCAGTTGTA+GGG - chr3_3:74692762-74692781 None:intergenic 30.0%
!!! AATTTTACCAGCATTGGTTA+TGG + chr3_3:74692814-74692833 Msa0472290:CDS 30.0%
ATTGGTTATGGAAGTAATTG+CGG + chr3_3:74692826-74692845 Msa0472290:CDS 30.0%
! ATCTCTCTTTTCGTTTCAAA+CGG - chr3_3:74692981-74693000 None:intergenic 30.0%
AGAGAGATGTTATGAAAAGA+AGG + chr3_3:74692993-74693012 Msa0472290:CDS 30.0%
! TTTTTCTCCAGAAAGAGAAT+CGG - chr3_3:74693197-74693216 None:intergenic 30.0%
TTAGCAAATATGTGACTTAG+TGG + chr3_3:74693243-74693262 Msa0472290:three_prime_UTR 30.0%
GGAAAGGCAAAAAAGAAAAA+TGG - chr3_3:74693367-74693386 None:intergenic 30.0%
!! TATACGCTGATTCTTGTCTT+TGG + chr3_3:74689801-74689820 Msa0472290:five_prime_UTR 35.0%
GGATCCAATAAACAACAACA+TGG + chr3_3:74689822-74689841 Msa0472290:exon 35.0%
!! TCACCCATGTTGTTGTTTAT+TGG - chr3_3:74689829-74689848 None:intergenic 35.0%
AATAAACAACAACATGGGTG+AGG + chr3_3:74689828-74689847 Msa0472290:exon 35.0%
GGAGAAATTCTTGCCAAAAA+TGG + chr3_3:74689975-74689994 Msa0472290:CDS 35.0%
!! TCTTGCCAAAAATGGTTTTG+AGG + chr3_3:74689983-74690002 Msa0472290:CDS 35.0%
!!! CTTGCCAAAAATGGTTTTGA+GGG + chr3_3:74689984-74690003 Msa0472290:CDS 35.0%
! AGTCTTTGGACTGCAAATTT+TGG + chr3_3:74690409-74690428 Msa0472290:intron 35.0%
!! TTGGACTGCAAATTTTGGAA+AGG + chr3_3:74690414-74690433 Msa0472290:intron 35.0%
!! GCAAATTTTGGAAAGGATCA+AGG + chr3_3:74690421-74690440 Msa0472290:intron 35.0%
ACTAGGTTAAGCCATAAACT+TGG + chr3_3:74690703-74690722 Msa0472290:intron 35.0%
CGCACTTCTCACATTAATTA+TGG + chr3_3:74690983-74691002 Msa0472290:CDS 35.0%
GTATACAAATGCATGTTGAG+AGG + chr3_3:74691164-74691183 Msa0472290:CDS 35.0%
GTGTATCACTTTCATCTTGA+GGG - chr3_3:74691411-74691430 None:intergenic 35.0%
TGTGTATCACTTTCATCTTG+AGG - chr3_3:74691412-74691431 None:intergenic 35.0%
!! AAGGAAGCTATTGACTTGAT+TGG + chr3_3:74691896-74691915 Msa0472290:CDS 35.0%
!! TGAAGCATTGGAATGCATAA+GGG - chr3_3:74692068-74692087 None:intergenic 35.0%
TGTTTGTATACCTGCATGAA+TGG - chr3_3:74692297-74692316 None:intergenic 35.0%
ATTCATGCAGGTATACAAAC+AGG + chr3_3:74692296-74692315 Msa0472290:intron 35.0%
GAGAAGTTAATTACTACTGC+AGG - chr3_3:74692337-74692356 None:intergenic 35.0%
! CTTACACCTTTTACAGGAAT+CGG - chr3_3:74692478-74692497 None:intergenic 35.0%
AATGATCTTTGTATGGCCTA+TGG + chr3_3:74692502-74692521 Msa0472290:CDS 35.0%
GTTCCTGTGTATACACAATT+TGG - chr3_3:74692702-74692721 None:intergenic 35.0%
TACACTTTGATCAGTTGTAG+GGG - chr3_3:74692761-74692780 None:intergenic 35.0%
GATACACTTTGATCAGTTGT+AGG - chr3_3:74692763-74692782 None:intergenic 35.0%
ATTACTTCCATAACCAATGC+TGG - chr3_3:74692824-74692843 None:intergenic 35.0%
AATGAAGAACTCACAAACAG+TGG + chr3_3:74692910-74692929 Msa0472290:CDS 35.0%
ACAAATTGTCCTTTAACTCG+AGG - chr3_3:74693160-74693179 None:intergenic 35.0%
! TTTTCTCCAGAAAGAGAATC+GGG - chr3_3:74693196-74693215 None:intergenic 35.0%
AAATATGTGACTTAGTGGAG+AGG + chr3_3:74693248-74693267 Msa0472290:three_prime_UTR 35.0%
TATATCAGGATCTAGAGGAA+AGG - chr3_3:74693383-74693402 None:intergenic 35.0%
AGCGTATAGCATCAGAATCT+TGG - chr3_3:74689789-74689808 None:intergenic 40.0%
TGGTGAGAAAATAGTGAGAG+TGG + chr3_3:74689861-74689880 Msa0472290:CDS 40.0%
AGTGGAAGAAGAAGAAGAGA+AGG + chr3_3:74689879-74689898 Msa0472290:CDS 40.0%
AAGAAGAAGAAGAGAAGGTG+AGG + chr3_3:74689884-74689903 Msa0472290:CDS 40.0%
AGAAGAAGAAGAGAAGGTGA+GGG + chr3_3:74689885-74689904 Msa0472290:CDS 40.0%
GTGAAATGAAAGGGCTTATG+AGG + chr3_3:74689950-74689969 Msa0472290:CDS 40.0%
AAATGAAAGGGCTTATGAGG+TGG + chr3_3:74689953-74689972 Msa0472290:CDS 40.0%
AATGAAAGGGCTTATGAGGT+GGG + chr3_3:74689954-74689973 Msa0472290:CDS 40.0%
! AGCACCCTCAAAACCATTTT+TGG - chr3_3:74689991-74690010 None:intergenic 40.0%
!!! AATGGTTTTGAGGGTGCTTT+TGG + chr3_3:74689993-74690012 Msa0472290:CDS 40.0%
AAGGCATGGGAAATACTCAA+AGG + chr3_3:74690900-74690919 Msa0472290:CDS 40.0%
AGTATCAGATCAATACTGCG+CGG - chr3_3:74690930-74690949 None:intergenic 40.0%
GTTTGGAGAAGACAATCAGT+AGG + chr3_3:74691248-74691267 Msa0472290:CDS 40.0%
ACTTGACATTCATTTAGGCC+AGG + chr3_3:74691588-74691607 Msa0472290:CDS 40.0%
!! ATCATTTTGTTCGACTCGCA+AGG + chr3_3:74691666-74691685 Msa0472290:intron 40.0%
GACAAGCGCAAATAATTGCA+AGG + chr3_3:74691787-74691806 Msa0472290:CDS 40.0%
AGCGCAAATAATTGCAAGGA+CGG + chr3_3:74691791-74691810 Msa0472290:CDS 40.0%
!!! GCGATGATCAAGAGCATTTT+AGG + chr3_3:74691813-74691832 Msa0472290:CDS 40.0%
TTTAGGAATGCTAGCATCAG+TGG + chr3_3:74691830-74691849 Msa0472290:CDS 40.0%
AAAGATCCAACTGTGGAGAA+TGG - chr3_3:74691988-74692007 None:intergenic 40.0%
AGATCCTTCTCAAAGTTGCT+GGG - chr3_3:74692028-74692047 None:intergenic 40.0%
!! CTGAAGCATTGGAATGCATA+AGG - chr3_3:74692069-74692088 None:intergenic 40.0%
CCAATGCTTCAGCTTTCAAA+CGG + chr3_3:74692077-74692096 Msa0472290:CDS 40.0%
GCATGCAGAATTCAACAAAG+CGG - chr3_3:74692255-74692274 None:intergenic 40.0%
CTGCATGCTTATCACTGAAA+TGG + chr3_3:74692267-74692286 Msa0472290:intron 40.0%
AAATGGTGTTCCATTCATGC+AGG + chr3_3:74692284-74692303 Msa0472290:intron 40.0%
CAACTTCACATTCTCAGCAA+GGG + chr3_3:74692443-74692462 Msa0472290:CDS 40.0%
TCTCTTCCGATTCCTGTAAA+AGG + chr3_3:74692469-74692488 Msa0472290:CDS 40.0%
! CGATTCCTGTAAAAGGTGTA+AGG + chr3_3:74692476-74692495 Msa0472290:CDS 40.0%
!!! CTGCTTGAAAGTTTTGTTCG+AGG - chr3_3:74692594-74692613 None:intergenic 40.0%
GAGATAAGTCTTTGATCCTC+CGG - chr3_3:74692739-74692758 None:intergenic 40.0%
ACCAATGCTGGTAAAATTGC+TGG - chr3_3:74692812-74692831 None:intergenic 40.0%
ATTCACATCGAGCTATGCTA+CGG + chr3_3:74692935-74692954 Msa0472290:CDS 40.0%
CACAGCATATACAGATCAAG+TGG - chr3_3:74693339-74693358 None:intergenic 40.0%
ATGGGTGAGGTTGTAATGAG+TGG + chr3_3:74689841-74689860 Msa0472290:CDS 45.0%
AGAAGGTGAGGGAAGAAGAA+GGG + chr3_3:74689896-74689915 Msa0472290:CDS 45.0%
! GAGGTGGTGGTGAAATGAAA+GGG + chr3_3:74689941-74689960 Msa0472290:CDS 45.0%
TTGGAAAGGATCAAGGCTCA+AGG + chr3_3:74690428-74690447 Msa0472290:intron 45.0%
TGGAAAGGATCAAGGCTCAA+GGG + chr3_3:74690429-74690448 Msa0472290:intron 45.0%
! TAATGTGAGAAGTGCGTAGC+CGG - chr3_3:74690979-74690998 None:intergenic 45.0%
GGAATTTGTGGCAGCATGTT+TGG + chr3_3:74691231-74691250 Msa0472290:CDS 45.0%
AACGCTGCTAGTAATCGTTC+CGG + chr3_3:74691460-74691479 Msa0472290:CDS 45.0%
AGCGTGGCTAACTGCAAAAA+TGG + chr3_3:74691731-74691750 Msa0472290:CDS 45.0%
GGCTAACTGCAAAAATGGAG+TGG + chr3_3:74691736-74691755 Msa0472290:CDS 45.0%
GTTTGACCATTCTCCACAGT+TGG + chr3_3:74691979-74691998 Msa0472290:CDS 45.0%
CTGAGAGAAAGATCCAACTG+TGG - chr3_3:74691995-74692014 None:intergenic 45.0%
! TCATCCCAGCAACTTTGAGA+AGG + chr3_3:74692021-74692040 Msa0472290:CDS 45.0%
GAGATCCTTCTCAAAGTTGC+TGG - chr3_3:74692029-74692048 None:intergenic 45.0%
AGAAGGATCTCACCGAAGAA+AGG + chr3_3:74692038-74692057 Msa0472290:CDS 45.0%
! CATAAGGGTGTGCCTTTCTT+CGG - chr3_3:74692053-74692072 None:intergenic 45.0%
CCGTTTGAAAGCTGAAGCAT+TGG - chr3_3:74692080-74692099 None:intergenic 45.0%
GCAACTTCACATTCTCAGCA+AGG + chr3_3:74692442-74692461 Msa0472290:CDS 45.0%
!! TGGTGGAAGTGTTGAACCAT+AGG - chr3_3:74692521-74692540 None:intergenic 45.0%
TATGGTTCAACACTTCCACC+AGG + chr3_3:74692520-74692539 Msa0472290:CDS 45.0%
ATGGTTCAACACTTCCACCA+GGG + chr3_3:74692521-74692540 Msa0472290:CDS 45.0%
TTCGAGGAACACAACTGAAC+CGG - chr3_3:74692578-74692597 None:intergenic 45.0%
GGAACACAAGTCAGAACATC+CGG + chr3_3:74692717-74692736 Msa0472290:CDS 45.0%
! GCCAGCAATTTTACCAGCAT+TGG + chr3_3:74692808-74692827 Msa0472290:CDS 45.0%
GGAAGTAATTGCGGAAGTAG+CGG + chr3_3:74692835-74692854 Msa0472290:CDS 45.0%
AGAACAGCAGCAGTTTCAGA+GGG + chr3_3:74692883-74692902 Msa0472290:CDS 45.0%
TTCACATCGAGCTATGCTAC+GGG + chr3_3:74692936-74692955 Msa0472290:CDS 45.0%
! AAAGAGAATCGGGATTCGGT+TGG - chr3_3:74693186-74693205 None:intergenic 45.0%
CCAGAAAGAGAATCGGGATT+CGG - chr3_3:74693190-74693209 None:intergenic 45.0%
!! TTTAATTAATTGTAAATATT+AGG + chr3_3:74690291-74690310 Msa0472290:intron 5.0%
!! TTTAATAATTACAAAAATTA+AGG + chr3_3:74690481-74690500 Msa0472290:intron 5.0%
!! TTAATAATTACAAAAATTAA+GGG + chr3_3:74690482-74690501 Msa0472290:intron 5.0%
!! AATTAATTTAAGTATTAATA+AGG - chr3_3:74691087-74691106 None:intergenic 5.0%
GAGAAGGTGAGGGAAGAAGA+AGG + chr3_3:74689895-74689914 Msa0472290:CDS 50.0%
AGTGGAACTGAGAGTAGAGG+AGG + chr3_3:74689919-74689938 Msa0472290:CDS 50.0%
! GGAGGTGGTGGTGAAATGAA+AGG + chr3_3:74689940-74689959 Msa0472290:CDS 50.0%
TGCTGTTGCTGATGGCTTGA+AGG + chr3_3:74690881-74690900 Msa0472290:CDS 50.0%
TTGCTGATGGCTTGAAGGCA+TGG + chr3_3:74690886-74690905 Msa0472290:CDS 50.0%
! TGCTGATGGCTTGAAGGCAT+GGG + chr3_3:74690887-74690906 Msa0472290:CDS 50.0%
!! GTCGATTTGCCAGCCATATC+CGG + chr3_3:74690957-74690976 Msa0472290:CDS 50.0%
GAATCTTGCGACGACATCAC+TGG - chr3_3:74691134-74691153 None:intergenic 50.0%
TTGAGGGCCATTTATGCCAG+CGG - chr3_3:74691395-74691414 None:intergenic 50.0%
!! AGCAGCGTTGTTTTCAGCAG+TGG - chr3_3:74691449-74691468 None:intergenic 50.0%
GAATGCTAGCATCAGTGGTG+AGG + chr3_3:74691835-74691854 Msa0472290:CDS 50.0%
GATTGTGTACGAAACCCTGG+TGG - chr3_3:74692538-74692557 None:intergenic 50.0%
CCTGATTGTGTACGAAACCC+TGG - chr3_3:74692541-74692560 None:intergenic 50.0%
CCAGGGTTTCGTACACAATC+AGG + chr3_3:74692538-74692557 Msa0472290:CDS 50.0%
!! ACAACTGAACCGGGCATTGA+TGG - chr3_3:74692568-74692587 None:intergenic 50.0%
TCGAGGAACACAACTGAACC+GGG - chr3_3:74692577-74692596 None:intergenic 50.0%
TACGAACCTCGCGGTCTAAA+TGG + chr3_3:74692661-74692680 Msa0472290:CDS 50.0%
CTGTTTCCATTTAGACCGCG+AGG - chr3_3:74692670-74692689 None:intergenic 50.0%
ACACAAGTCAGAACATCCGG+AGG + chr3_3:74692720-74692739 Msa0472290:CDS 50.0%
CAGAACAGCAGCAGTTTCAG+AGG + chr3_3:74692882-74692901 Msa0472290:CDS 50.0%
CCGAATCCCGATTCTCTTTC+TGG + chr3_3:74693187-74693206 Msa0472290:CDS 50.0%
GTGAGGGAAGAAGAAGGGAG+TGG + chr3_3:74689901-74689920 Msa0472290:CDS 55.0%
GGGAGTGGAACTGAGAGTAG+AGG + chr3_3:74689916-74689935 Msa0472290:CDS 55.0%
GGAACTGAGAGTAGAGGAGG+AGG + chr3_3:74689922-74689941 Msa0472290:CDS 55.0%
ACTGAGAGTAGAGGAGGAGG+TGG + chr3_3:74689925-74689944 Msa0472290:CDS 55.0%
GCAGTTGCTGCTGTTGCTGA+TGG + chr3_3:74690873-74690892 Msa0472290:intron 55.0%
! GAGAAGTGCGTAGCCGGATA+TGG - chr3_3:74690973-74690992 None:intergenic 55.0%
GCCATTTATGCCAGCGGTTG+CGG - chr3_3:74691389-74691408 None:intergenic 55.0%
GCTGCTAGTAATCGTTCCGG+CGG + chr3_3:74691463-74691482 Msa0472290:CDS 55.0%
AATGCAAGCAGCATCACCGC+CGG - chr3_3:74691482-74691501 None:intergenic 55.0%
TCAGGTCCACCATCAATGCC+CGG + chr3_3:74692556-74692575 Msa0472290:CDS 55.0%
!! ACTGAACCGGGCATTGATGG+TGG - chr3_3:74692565-74692584 None:intergenic 55.0%
GAGCAGCTTTACGAACCTCG+CGG + chr3_3:74692652-74692671 Msa0472290:CDS 55.0%
GAGCAGCGTCCTCGAGTTAA+AGG + chr3_3:74693148-74693167 Msa0472290:CDS 55.0%
GAGAGTAGAGGAGGAGGTGG+TGG + chr3_3:74689928-74689947 Msa0472290:CDS 60.0%
AGTGCGTAGCCGGATATGGC+TGG - chr3_3:74690969-74690988 None:intergenic 60.0%
GCCGCAACCGCTGGCATAAA+TGG + chr3_3:74691385-74691404 Msa0472290:CDS 60.0%
TGTCCTGCGCGATCACTGCC+TGG - chr3_3:74691609-74691628 None:intergenic 65.0%
ATCGCGCAGGACAGTCACGC+CGG + chr3_3:74691616-74691635 Msa0472290:CDS 65.0%
CAGCAGTCAGCCGCAACCGC+TGG + chr3_3:74691376-74691395 Msa0472290:intron 70.0%
AGGCCAGGCAGTGATCGCGC+AGG + chr3_3:74691603-74691622 Msa0472290:CDS 70.0%
GCGCAGGACAGTCACGCCGG+AGG + chr3_3:74691619-74691638 Msa0472290:CDS 75.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 74689767 74693460 74689767 ID=Msa0472290;Name=Msa0472290
chr3_3 mRNA 74689767 74693460 74689767 ID=Msa0472290-mRNA-1;Parent=Msa0472290;Name=Msa0472290-mRNA-1;_AED=0.05;_eAED=0.05;_QI=74|0.83|0.71|1|1|1|7|235|669
chr3_3 exon 74689767 74690078 74689767 ID=Msa0472290-mRNA-1:exon:19154;Parent=Msa0472290-mRNA-1
chr3_3 exon 74690877 74691038 74690877 ID=Msa0472290-mRNA-1:exon:19155;Parent=Msa0472290-mRNA-1
chr3_3 exon 74691135 74691292 74691135 ID=Msa0472290-mRNA-1:exon:19156;Parent=Msa0472290-mRNA-1
chr3_3 exon 74691379 74691640 74691379 ID=Msa0472290-mRNA-1:exon:19157;Parent=Msa0472290-mRNA-1
chr3_3 exon 74691726 74692098 74691726 ID=Msa0472290-mRNA-1:exon:19158;Parent=Msa0472290-mRNA-1
chr3_3 exon 74692306 74693014 74692306 ID=Msa0472290-mRNA-1:exon:19159;Parent=Msa0472290-mRNA-1
chr3_3 exon 74693118 74693460 74693118 ID=Msa0472290-mRNA-1:exon:19160;Parent=Msa0472290-mRNA-1
chr3_3 five_prime_UTR 74689767 74689840 74689767 ID=Msa0472290-mRNA-1:five_prime_utr;Parent=Msa0472290-mRNA-1
chr3_3 CDS 74689841 74690078 74689841 ID=Msa0472290-mRNA-1:cds;Parent=Msa0472290-mRNA-1
chr3_3 CDS 74690877 74691038 74690877 ID=Msa0472290-mRNA-1:cds;Parent=Msa0472290-mRNA-1
chr3_3 CDS 74691135 74691292 74691135 ID=Msa0472290-mRNA-1:cds;Parent=Msa0472290-mRNA-1
chr3_3 CDS 74691379 74691640 74691379 ID=Msa0472290-mRNA-1:cds;Parent=Msa0472290-mRNA-1
chr3_3 CDS 74691726 74692098 74691726 ID=Msa0472290-mRNA-1:cds;Parent=Msa0472290-mRNA-1
chr3_3 CDS 74692306 74693014 74692306 ID=Msa0472290-mRNA-1:cds;Parent=Msa0472290-mRNA-1
chr3_3 CDS 74693118 74693225 74693118 ID=Msa0472290-mRNA-1:cds;Parent=Msa0472290-mRNA-1
chr3_3 three_prime_UTR 74693226 74693460 74693226 ID=Msa0472290-mRNA-1:three_prime_utr;Parent=Msa0472290-mRNA-1
Gene Sequence

>Msa0472290

ATGGGTGAGGTTGTAATGAGTGGTGAGAAAATAGTGAGAGTGGAAGAAGAAGAAGAGAAGGTGAGGGAAGAAGAAGGGAGTGGAACTGAGAGTAGAGGAGGAGGTGGTGGTGAAATGAAAGGGCTTATGAGGTGGGAGAAATTCTTGCCAAAAATGGTTTTGAGGGTGCTTTTGGTTGAAGCTGATGATTGTACAAGACAGATTATTACAGCACTTCTTAGAAAATGCAACTATAAAGTTGCTGCTGTTGCTGATGGCTTGAAGGCATGGGAAATACTCAAAGGAAGACCGCGCAGTATTGATCTGATACTTACAGAAGTCGATTTGCCAGCCATATCCGGCTACGCACTTCTCACATTAATTATGGAGCATGATATTTGCAAGAGCATCCCTGTCATAATGATGTCGTCGCAAGATTCAGTTAGCACAGTATACAAATGCATGTTGAGAGGTGCAGCTGACTATCTTGTTAAGCCGATTCGAATAAATGAACTAAGGAATTTGTGGCAGCATGTTTGGAGAAGACAATCAGTAGGACTTCTGCTCTCTCAATTTTCACAGTCAGCCGCAACCGCTGGCATAAATGGCCCTCAAGATGAAAGTGATACACAACAGAAGTTTGAAGCCACTGCTGAAAACAACGCTGCTAGTAATCGTTCCGGCGGTGATGCTGCTTGCATTCAAAGAAATAAGGACTTAATTGAGAAAGGAAGTGATGCACAGAGCTCTTGTGCTGAAGCATATCCAAGTGAAATAAAGACACAAGAACTTGACATTCATTTAGGCCAGGCAGTGATCGCGCAGGACAGTCACGCCGGAGGATTAAGCGTGGCTAACTGCAAAAATGGAGTGGCAAGCACAAATAACTGTAAAAATGGAGAGACAAGCGCAAATAATTGCAAGGACGGCGATGATCAAGAGCATTTTAGGAATGCTAGCATCAGTGGTGAGGTTCATGACAATCACTATGTTCAAATTTACTCTACTACTAAGGAAGCTATTGACTTGATTGGAGCATTTCGTACTGATCCGAATTGCAGTCTCAAAAATTCATCAATTGATTGCACAGGCAAGTTTGACCATTCTCCACAGTTGGATCTTTCTCTCAGAAGCTCTCATCCCAGCAACTTTGAGAAGGATCTCACCGAAGAAAGGCACACCCTTATGCATTCCAATGCTTCAGCTTTCAAACGGTATACAAACAGGCAATTGCAAGCGTCACCTGCAGTAGTAATTAACTTCTCTGATCAACAAAGAGAACAAAAAACAAATAATGAGAACCATAACTCAGATAGTTCAATACCAAGTATGCAAAAAGAATCTGAACTTGCAACTTCACATTCTCAGCAAGGGCATTCTCTTCCGATTCCTGTAAAAGGTGTAAGGTTAAATGATCTTTGTATGGCCTATGGTTCAACACTTCCACCAGGGTTTCGTACACAATCAGGTCCACCATCAATGCCCGGTTCAGTTGTGTTCCTCGAACAAAACTTTCAAGCAGATGCATTTTATCAGTCAAATGTTAAAGAAAATAATTCAGAGCAGCTTTACGAACCTCGCGGTCTAAATGGAAACAGCACTCCAAACCAAATTGTGTATACACAGGAACACAAGTCAGAACATCCGGAGGATCAAAGACTTATCTCCCCTACAACTGATCAAAGTGTATCCAGTAGTATTTGTAATAATGGAAATGCCAGCAATTTTACCAGCATTGGTTATGGAAGTAATTGCGGAAGTAGCGGCAATGTTGAACAAGTTGCAACTTTCAGAACAGCAGCAGTTTCAGAGGGAAAGAATGAAGAACTCACAAACAGTGGATATTCACATCGAGCTATGCTACGGGAAGCAGCTCTACACAAGTTCCGTTTGAAACGAAAAGAGAGATGTTATGAAAAGAAGGTTCGATATGAGAGCAGAAAGAAACTAGCAGAGCAGCGTCCTCGAGTTAAAGGACAATTTGTTCGCCAACCGAATCCCGATTCTCTTTCTGGAGAAAAAGATTGCTAA
Protein sequence

>Msa0472290

MGEVVMSGEKIVRVEEEEEKVREEEGSGTESRGGGGGEMKGLMRWEKFLPKMVLRVLLVEADDCTRQIITALLRKCNYKVAAVADGLKAWEILKGRPRSIDLILTEVDLPAISGYALLTLIMEHDICKSIPVIMMSSQDSVSTVYKCMLRGAADYLVKPIRINELRNLWQHVWRRQSVGLLLSQFSQSAATAGINGPQDESDTQQKFEATAENNAASNRSGGDAACIQRNKDLIEKGSDAQSSCAEAYPSEIKTQELDIHLGQAVIAQDSHAGGLSVANCKNGVASTNNCKNGETSANNCKDGDDQEHFRNASISGEVHDNHYVQIYSTTKEAIDLIGAFRTDPNCSLKNSSIDCTGKFDHSPQLDLSLRSSHPSNFEKDLTEERHTLMHSNASAFKRYTNRQLQASPAVVINFSDQQREQKTNNENHNSDSSIPSMQKESELATSHSQQGHSLPIPVKGVRLNDLCMAYGSTLPPGFRTQSGPPSMPGSVVFLEQNFQADAFYQSNVKENNSEQLYEPRGLNGNSTPNQIVYTQEHKSEHPEDQRLISPTTDQSVSSSICNNGNASNFTSIGYGSNCGSSGNVEQVATFRTAAVSEGKNEELTNSGYSHRAMLREAALHKFRLKRKERCYEKKVRYESRKKLAEQRPRVKGQFVRQPNPDSLSGEKDC*