Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0120870 | XP_013468064.1 | 86.255 | 502 | 24 | 2 | 1 | 500 | 1 | 459 | 0.0 | 857 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0120870 | sp|Q8GYY1|HSFA3_ARATH | 50.167 | 299 | 102 | 3 | 27 | 321 | 35 | 290 | 1.07e-88 | 280 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0120870 | A0A072VKE1 | 86.255 | 502 | 24 | 2 | 1 | 500 | 1 | 459 | 0.0 | 857 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0120870 | TF | HSF |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0024940 | Msa0120870 | 0.984346 | 2.703838e-160 | -8.615850e-47 |
| Msa0072430 | Msa0120870 | 0.968608 | 6.407578e-129 | -8.615850e-47 |
| Msa0120870 | Msa0343510 | 0.916909 | 1.009584e-85 | -8.615850e-47 |
| Msa0120870 | Msa0376700 | 0.840677 | 7.526798e-58 | -8.615850e-47 |
| Msa0120870 | Msa0425830 | 0.864613 | 1.071687e-64 | -8.615850e-47 |
| Msa0120870 | Msa0472290 | 0.863514 | 2.358068e-64 | -8.615850e-47 |
| Msa0120870 | Msa1128260 | 0.829479 | 5.029741e-55 | -8.615850e-47 |
| Msa0120870 | Msa1411850 | 0.838613 | 2.591346e-57 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0120870 | MtrunA17_Chr1g0179311 | 94.587 | 351 | 19 | 0 | 150 | 500 | 14 | 364 | 0.0 | 684 |
| Msa0120870 | MtrunA17_Chr1g0179321 | 94.444 | 108 | 4 | 1 | 1 | 106 | 1 | 108 | 1.28e-65 | 207 |
| Msa0120870 | MtrunA17_Chr5g0410881 | 41.781 | 292 | 113 | 4 | 31 | 308 | 16 | 264 | 3.07e-65 | 219 |
| Msa0120870 | MtrunA17_Chr3g0135831 | 36.591 | 399 | 181 | 11 | 33 | 426 | 32 | 363 | 3.15e-64 | 213 |
| Msa0120870 | MtrunA17_Chr1g0204741 | 41.000 | 300 | 118 | 7 | 25 | 317 | 15 | 262 | 2.03e-61 | 204 |
| Msa0120870 | MtrunA17_Chr7g0260331 | 39.677 | 310 | 136 | 5 | 13 | 315 | 16 | 281 | 5.26e-61 | 204 |
| Msa0120870 | MtrunA17_Chr4g0039891 | 36.127 | 346 | 151 | 7 | 45 | 366 | 10 | 309 | 1.98e-60 | 206 |
| Msa0120870 | MtrunA17_Chr4g0071051 | 38.077 | 260 | 113 | 2 | 17 | 276 | 71 | 282 | 4.74e-52 | 182 |
| Msa0120870 | MtrunA17_Chr1g0185131 | 41.631 | 233 | 84 | 3 | 34 | 266 | 19 | 199 | 1.91e-49 | 173 |
| Msa0120870 | MtrunA17_Chr6g0467041 | 34.286 | 245 | 111 | 4 | 45 | 287 | 20 | 216 | 2.73e-39 | 145 |
| Msa0120870 | MtrunA17_Chr8g0378061 | 30.833 | 360 | 173 | 11 | 48 | 390 | 23 | 323 | 7.72e-39 | 147 |
| Msa0120870 | MtrunA17_Chr8g0379701 | 34.978 | 223 | 100 | 2 | 43 | 263 | 8 | 187 | 1.66e-38 | 145 |
| Msa0120870 | MtrunA17_Chr8g0392001 | 33.121 | 314 | 148 | 7 | 45 | 349 | 20 | 280 | 2.66e-38 | 143 |
| Msa0120870 | MtrunA17_Chr2g0330821 | 35.345 | 232 | 105 | 2 | 47 | 278 | 79 | 265 | 3.62e-37 | 140 |
| Msa0120870 | MtrunA17_Chr6g0485571 | 32.780 | 241 | 117 | 3 | 45 | 285 | 9 | 204 | 1.24e-36 | 138 |
| Msa0120870 | MtrunA17_Chr3g0134031 | 46.853 | 143 | 33 | 1 | 47 | 189 | 24 | 123 | 2.84e-32 | 127 |
| Msa0120870 | MtrunA17_Chr2g0284481 | 29.958 | 237 | 111 | 3 | 45 | 276 | 13 | 199 | 1.93e-31 | 125 |
| Msa0120870 | MtrunA17_Chr5g0397881 | 43.262 | 141 | 37 | 1 | 41 | 181 | 18 | 115 | 3.59e-31 | 123 |
| Msa0120870 | MtrunA17_Chr7g0257331 | 35.644 | 202 | 76 | 2 | 37 | 227 | 12 | 170 | 5.02e-31 | 120 |
| Msa0120870 | MtrunA17_Chr5g0402291 | 33.065 | 248 | 108 | 5 | 41 | 273 | 3 | 207 | 1.39e-30 | 120 |
| Msa0120870 | MtrunA17_Chr5g0441531 | 34.466 | 206 | 71 | 3 | 41 | 225 | 19 | 181 | 2.80e-28 | 113 |
| Msa0120870 | MtrunA17_Chr6g0472421 | 42.222 | 135 | 35 | 1 | 47 | 181 | 33 | 124 | 1.48e-27 | 113 |
| Msa0120870 | MtrunA17_Chr1g0203601 | 32.710 | 214 | 72 | 3 | 41 | 225 | 12 | 182 | 2.68e-27 | 111 |
| Msa0120870 | MtrunA17_Chr8g0375041 | 32.710 | 214 | 82 | 4 | 44 | 239 | 6 | 175 | 1.51e-26 | 108 |
| Msa0120870 | MtrunA17_Chr4g0047421 | 32.796 | 186 | 77 | 3 | 47 | 228 | 33 | 174 | 9.78e-24 | 99.0 |
| Msa0120870 | MtrunA17_Chr4g0023771 | 53.425 | 73 | 34 | 0 | 45 | 117 | 13 | 85 | 4.51e-20 | 85.5 |
| Msa0120870 | MtrunA17_Chr2g0330841 | 35.714 | 140 | 88 | 1 | 148 | 287 | 39 | 176 | 2.34e-19 | 90.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0120870 | AT5G03720.2 | 50.167 | 299 | 102 | 3 | 27 | 321 | 35 | 290 | 1.09e-89 | 280 |
| Msa0120870 | AT5G03720.1 | 50.167 | 299 | 102 | 3 | 27 | 321 | 35 | 290 | 1.09e-89 | 280 |
| Msa0120870 | AT5G16820.1 | 35.765 | 425 | 186 | 10 | 45 | 448 | 25 | 383 | 2.36e-63 | 214 |
| Msa0120870 | AT5G16820.2 | 35.765 | 425 | 186 | 10 | 45 | 448 | 25 | 383 | 2.36e-63 | 214 |
| Msa0120870 | AT1G32330.2 | 39.032 | 310 | 123 | 5 | 22 | 308 | 7 | 273 | 1.19e-61 | 209 |
| Msa0120870 | AT1G32330.1 | 39.032 | 310 | 123 | 5 | 22 | 308 | 7 | 273 | 1.24e-61 | 209 |
| Msa0120870 | AT3G02990.1 | 40.777 | 309 | 121 | 6 | 42 | 336 | 18 | 278 | 2.76e-60 | 205 |
| Msa0120870 | AT4G17750.1 | 38.318 | 321 | 119 | 7 | 24 | 308 | 19 | 296 | 7.88e-58 | 199 |
| Msa0120870 | AT3G22830.1 | 39.416 | 274 | 113 | 3 | 23 | 286 | 37 | 267 | 7.34e-57 | 194 |
| Msa0120870 | AT2G26150.1 | 41.313 | 259 | 101 | 4 | 34 | 285 | 31 | 245 | 1.51e-55 | 189 |
| Msa0120870 | AT2G26150.4 | 41.313 | 259 | 101 | 4 | 34 | 285 | 31 | 245 | 1.51e-55 | 189 |
| Msa0120870 | AT3G63350.1 | 40.984 | 244 | 99 | 2 | 34 | 277 | 15 | 213 | 1.03e-53 | 182 |
| Msa0120870 | AT3G51910.1 | 39.370 | 254 | 93 | 4 | 37 | 285 | 19 | 216 | 1.18e-49 | 171 |
| Msa0120870 | AT5G43840.1 | 35.294 | 289 | 123 | 6 | 32 | 317 | 4 | 231 | 7.97e-48 | 167 |
| Msa0120870 | AT5G54070.1 | 33.333 | 264 | 122 | 4 | 41 | 300 | 65 | 278 | 1.35e-42 | 154 |
| Msa0120870 | AT1G67970.1 | 34.701 | 268 | 128 | 4 | 45 | 308 | 17 | 241 | 2.22e-41 | 152 |
| Msa0120870 | AT4G13980.1 | 33.333 | 240 | 115 | 2 | 48 | 287 | 24 | 218 | 1.11e-39 | 150 |
| Msa0120870 | AT3G24520.1 | 36.797 | 231 | 82 | 5 | 45 | 275 | 15 | 181 | 7.29e-37 | 139 |
| Msa0120870 | AT5G45710.3 | 32.627 | 236 | 114 | 2 | 43 | 276 | 9 | 201 | 2.39e-34 | 132 |
| Msa0120870 | AT5G45710.1 | 32.627 | 236 | 114 | 2 | 43 | 276 | 9 | 201 | 2.39e-34 | 132 |
| Msa0120870 | AT4G18880.1 | 35.652 | 230 | 102 | 2 | 43 | 269 | 11 | 197 | 8.81e-33 | 129 |
| Msa0120870 | AT5G62020.1 | 40.541 | 148 | 45 | 1 | 41 | 188 | 17 | 121 | 7.25e-30 | 119 |
| Msa0120870 | AT1G46264.1 | 44.928 | 138 | 33 | 1 | 47 | 184 | 34 | 128 | 8.89e-30 | 120 |
| Msa0120870 | AT4G11660.1 | 42.361 | 144 | 40 | 1 | 41 | 184 | 53 | 153 | 3.20e-29 | 119 |
| Msa0120870 | AT4G36990.1 | 30.588 | 255 | 125 | 4 | 35 | 280 | 2 | 213 | 5.66e-29 | 116 |
| Msa0120870 | AT2G26150.3 | 46.154 | 143 | 69 | 3 | 150 | 285 | 49 | 190 | 7.91e-29 | 115 |
| Msa0120870 | AT2G26150.2 | 46.154 | 143 | 69 | 3 | 150 | 285 | 49 | 190 | 7.91e-29 | 115 |
| Msa0120870 | AT2G41690.1 | 40.141 | 142 | 42 | 1 | 41 | 182 | 34 | 132 | 1.11e-27 | 111 |
Find 109 sgRNAs with CRISPR-Local
Find 168 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAAAGATGAAGAAGAAAATT+TGG | 0.205164 | 1_3:-46117172 | None:intergenic |
| AATTCAGAAACTAATATTAT+TGG | 0.214900 | 1_3:+46119005 | Msa0120870:CDS |
| ACGACCGGCTTCCATGATTT+TGG | 0.229018 | 1_3:+46119429 | Msa0120870:three_prime_UTR |
| TTTGAAGGGTTTCAATCTAT+TGG | 0.240093 | 1_3:+46119116 | Msa0120870:CDS |
| GAAGTTTGGGTATTGATAAT+TGG | 0.249663 | 1_3:+46119309 | Msa0120870:CDS |
| GAAACAAATGGTATCTTTCT+TGG | 0.279705 | 1_3:+46118641 | Msa0120870:CDS |
| CTTTGTTGTTTGGGATCCTT+TGG | 0.287745 | 1_3:+46117362 | Msa0120870:CDS |
| TCACCTTTAGTCATTTCTTT+AGG | 0.294012 | 1_3:-46118909 | None:intergenic |
| GATATGTGGGATATTGGTTT+TGG | 0.304447 | 1_3:+46119287 | Msa0120870:CDS |
| TTATCAAGCAAGAAGATATA+TGG | 0.310553 | 1_3:+46119150 | Msa0120870:CDS |
| TAGTGAGGTACCAACCAAAT+TGG | 0.312029 | 1_3:+46118802 | Msa0120870:CDS |
| TGGTGTTAGCTTTGTTGTTT+GGG | 0.316297 | 1_3:+46117353 | Msa0120870:CDS |
| GGCGAAGGATCATCTAGTTT+TGG | 0.320995 | 1_3:+46119026 | Msa0120870:CDS |
| TTGAAGGGTTTCAATCTATT+GGG | 0.328172 | 1_3:+46119117 | Msa0120870:CDS |
| TCAGGAATAACTTCTTCATT+TGG | 0.329440 | 1_3:-46119089 | None:intergenic |
| AAAATCTTGATTCATAAGTT+TGG | 0.330581 | 1_3:+46119399 | Msa0120870:three_prime_UTR |
| ATGGTGTTAGCTTTGTTGTT+TGG | 0.339618 | 1_3:+46117352 | Msa0120870:CDS |
| ACAAACTTTCTTCTAACTCT+TGG | 0.347851 | 1_3:-46118735 | None:intergenic |
| TACAATACAGTTAGCTGTAT+TGG | 0.359866 | 1_3:-46118028 | None:intergenic |
| AGTGAGGTACCAACCAAATT+GGG | 0.367055 | 1_3:+46118803 | Msa0120870:CDS |
| TCTCTAATAGCAGGGAAATC+TGG | 0.369457 | 1_3:+46118477 | Msa0120870:intron |
| ACAGCACCAACATTGAAGTT+AGG | 0.369889 | 1_3:-46119176 | None:intergenic |
| ATTAAGCTGACGAACAAAAC+TGG | 0.370082 | 1_3:-46117433 | None:intergenic |
| ATGTGGGATCCTATGAATTA+TGG | 0.371954 | 1_3:+46119224 | Msa0120870:CDS |
| TTTGAAAGAAATGGTGGAAC+TGG | 0.396168 | 1_3:-46117273 | None:intergenic |
| AAAGATGAAGAAGAAAATTT+GGG | 0.405694 | 1_3:-46117171 | None:intergenic |
| GAGACTCCTACTGCTGGAAT+TGG | 0.414069 | 1_3:+46117836 | Msa0120870:CDS |
| AGGTTGAGATTGAAAGATTG+AGG | 0.415211 | 1_3:+46118505 | Msa0120870:CDS |
| ATGTCAGATATGTGGGATAT+TGG | 0.416242 | 1_3:+46119281 | Msa0120870:CDS |
| TGAGATTGAAAGATTGAGGA+AGG | 0.438960 | 1_3:+46118509 | Msa0120870:CDS |
| TCAGATACTCCATAATTCAT+AGG | 0.440777 | 1_3:-46119233 | None:intergenic |
| TGCTCAAAGGCAACAATTGT+AGG | 0.443415 | 1_3:-46119526 | None:intergenic |
| GTTGGATCTTCTTCTGATGC+AGG | 0.443789 | 1_3:+46118292 | Msa0120870:CDS |
| AAGATGAAAATCCCTTGAAA+AGG | 0.445857 | 1_3:-46117884 | None:intergenic |
| TTACATTCAATCAATTCATC+GGG | 0.450505 | 1_3:+46119690 | Msa0120870:three_prime_UTR |
| TTTGAGCAATTATAGTTCCT+AGG | 0.453116 | 1_3:+46119541 | Msa0120870:three_prime_UTR |
| TGAAACCCTTCAAAATTCTC+AGG | 0.455295 | 1_3:-46119107 | None:intergenic |
| GCAAGATTGACACCGACAAA+TGG | 0.456806 | 1_3:+46118173 | Msa0120870:CDS |
| TCGTCAGCTTAATACTTATG+TGG | 0.457473 | 1_3:+46117443 | Msa0120870:CDS |
| GAAGAAGAAAATGTCAAAGA+TGG | 0.457561 | 1_3:+46118774 | Msa0120870:CDS |
| ATTACATTCAATCAATTCAT+CGG | 0.461570 | 1_3:+46119689 | Msa0120870:three_prime_UTR |
| TAGTGATGTTCCTGTGCCTA+TGG | 0.466887 | 1_3:+46117233 | Msa0120870:CDS |
| CTTTGAATCCGATCATATCA+TGG | 0.467206 | 1_3:+46117322 | Msa0120870:CDS |
| TGTAACTTCTGCCAAAATCA+TGG | 0.468787 | 1_3:-46119440 | None:intergenic |
| GAATATGAAGCATCAGCTAT+AGG | 0.469331 | 1_3:+46117198 | Msa0120870:CDS |
| TGACTATCTATTTCATCAAA+AGG | 0.470522 | 1_3:-46119347 | None:intergenic |
| TATCAAGCAAGAAGATATAT+GGG | 0.482434 | 1_3:+46119151 | Msa0120870:CDS |
| CAGCAAGTTGGTAACTATGT+TGG | 0.484482 | 1_3:+46118274 | Msa0120870:CDS |
| CAGCACCAACATTGAAGTTA+GGG | 0.486019 | 1_3:-46119175 | None:intergenic |
| AATTATGGAGTATCTGACTT+TGG | 0.488166 | 1_3:+46119239 | Msa0120870:CDS |
| TTGAGCAATTATAGTTCCTA+GGG | 0.491827 | 1_3:+46119542 | Msa0120870:three_prime_UTR |
| AGATGAAAATCCCTTGAAAA+GGG | 0.492699 | 1_3:-46117883 | None:intergenic |
| CAAGATTGACACCGACAAAT+GGG | 0.503413 | 1_3:+46118174 | Msa0120870:CDS |
| GAAACTAATATTATTGGCGA+AGG | 0.504296 | 1_3:+46119011 | Msa0120870:CDS |
| TCAGCTATAGGTGGTGGTAC+TGG | 0.505325 | 1_3:+46117210 | Msa0120870:CDS |
| AGCGCGACTTAAGCAGAAGA+AGG | 0.506475 | 1_3:+46118692 | Msa0120870:CDS |
| CTACCTAAAGAAATGACTAA+AGG | 0.514970 | 1_3:+46118906 | Msa0120870:CDS |
| TCAAAAGGAGATTCATCAGC+TGG | 0.517066 | 1_3:-46119332 | None:intergenic |
| TTGAAAGATTGAGGAAGGAG+AGG | 0.521106 | 1_3:+46118514 | Msa0120870:CDS |
| GATATGATCGGATTCAAAGA+AGG | 0.522372 | 1_3:-46117318 | None:intergenic |
| CGTCAGCTTAATACTTATGT+GGG | 0.527984 | 1_3:+46117444 | Msa0120870:CDS |
| CATTCAGAGACTCCTACTGC+TGG | 0.530276 | 1_3:+46117830 | Msa0120870:CDS |
| AGATCAAGTGAAAGATAGTG+AGG | 0.532262 | 1_3:-46118885 | None:intergenic |
| TTGAAAGAAATGGTGGAACT+GGG | 0.536323 | 1_3:-46117272 | None:intergenic |
| AACAACAAAGCTAACACCAT+TGG | 0.540487 | 1_3:-46117349 | None:intergenic |
| GTCCGGATTTGAAAACAACT+TGG | 0.541092 | 1_3:-46118664 | None:intergenic |
| TGAACAAAGACAGAAACAAA+TGG | 0.541684 | 1_3:+46118629 | Msa0120870:CDS |
| ACTGCTGGAATTGGCAACAT+AGG | 0.543095 | 1_3:+46117845 | Msa0120870:CDS |
| CGAATGACGGCTAGTCACGC+AGG | 0.554003 | 1_3:+46118579 | Msa0120870:CDS |
| CATTCAATCAATTCATCGGG+TGG | 0.556882 | 1_3:+46119693 | Msa0120870:three_prime_UTR |
| ATTTGTCGGTGTCAATCTTG+CGG | 0.568858 | 1_3:-46118171 | None:intergenic |
| GATGAATATGCTGCAATGCA+TGG | 0.570282 | 1_3:+46118969 | Msa0120870:CDS |
| TGGGACCCTAACTTCAATGT+TGG | 0.572995 | 1_3:+46119170 | Msa0120870:CDS |
| TCGGAGTTTCAATAAAATCA+CGG | 0.575050 | 1_3:+46119465 | Msa0120870:three_prime_UTR |
| ATAACTCTTGCAAACTCCAA+AGG | 0.576307 | 1_3:-46117378 | None:intergenic |
| GTGGTGACATGTCAGATATG+TGG | 0.577350 | 1_3:+46119273 | Msa0120870:CDS |
| TTTAAGTAATTTAGTATCAG+CGG | 0.578690 | 1_3:+46119723 | Msa0120870:three_prime_UTR |
| GAAGCATCAGCTATAGGTGG+TGG | 0.582607 | 1_3:+46117204 | Msa0120870:CDS |
| ATCATATCATGGAGTTCCAA+TGG | 0.583067 | 1_3:+46117333 | Msa0120870:CDS |
| TTGGAACTCCATGATATGAT+CGG | 0.584421 | 1_3:-46117330 | None:intergenic |
| ACTTGTTGAAAAGCATTCAA+AGG | 0.586884 | 1_3:+46118233 | Msa0120870:CDS |
| TCTGCCAAAATCATGGAAGC+CGG | 0.586953 | 1_3:-46119433 | None:intergenic |
| CTCATCTGCAAACACTCCAT+AGG | 0.589952 | 1_3:-46117249 | None:intergenic |
| GTGAGGTACCAACCAAATTG+GGG | 0.592193 | 1_3:+46118804 | Msa0120870:CDS |
| ATATGATCGGATTCAAAGAA+GGG | 0.594477 | 1_3:-46117317 | None:intergenic |
| ATGTTGCCAATTCCAGCAGT+AGG | 0.594776 | 1_3:-46117842 | None:intergenic |
| TTGTTGTGTTTGAAGTGTCT+AGG | 0.595204 | 1_3:-46117405 | None:intergenic |
| AAGTTTGGCAGAATCACGAC+CGG | 0.596934 | 1_3:+46119414 | Msa0120870:three_prime_UTR |
| TGCAAACACTCCATAGGCAC+AGG | 0.597520 | 1_3:-46117243 | None:intergenic |
| ACGCAGGTAATGTGAATCAA+AGG | 0.601321 | 1_3:+46118595 | Msa0120870:CDS |
| TAGGAACTATAATTGCTCAA+AGG | 0.601783 | 1_3:-46119539 | None:intergenic |
| TTTGATGAAATAGATAGTCA+AGG | 0.610338 | 1_3:+46119350 | Msa0120870:CDS |
| TATTCAATAATATGACCCCT+AGG | 0.610454 | 1_3:-46119558 | None:intergenic |
| TGGTGACATGTCAGATATGT+GGG | 0.612349 | 1_3:+46119274 | Msa0120870:CDS |
| CAAACTGTGGGAATGAGATG+TGG | 0.613012 | 1_3:+46119207 | Msa0120870:CDS |
| ACGTCTCAATCTCAGCAAGT+TGG | 0.616416 | 1_3:+46118262 | Msa0120870:CDS |
| ACAGCAGCAACAACGAATGA+CGG | 0.617265 | 1_3:+46118566 | Msa0120870:CDS |
| GACTTTGGAGTTGTTACAAG+TGG | 0.618117 | 1_3:+46119254 | Msa0120870:CDS |
| AGCAGGGAAATCTGGAGTCG+AGG | 0.619956 | 1_3:+46118485 | Msa0120870:intron |
| TCAAAGATGGAAAGATAGTG+AGG | 0.635058 | 1_3:+46118787 | Msa0120870:CDS |
| CTGTTGCTACTTCAAACTGT+GGG | 0.638412 | 1_3:+46119195 | Msa0120870:CDS |
| GATGAAATAGATAGTCAAGG+TGG | 0.640962 | 1_3:+46119353 | Msa0120870:CDS |
| GACTGTGTTAATGCAAGAAG+TGG | 0.653059 | 1_3:+46118536 | Msa0120870:CDS |
| AAACTGTGGGAATGAGATGT+GGG | 0.653938 | 1_3:+46119208 | Msa0120870:CDS |
| GCTGTTGCTACTTCAAACTG+TGG | 0.663813 | 1_3:+46119194 | Msa0120870:CDS |
| TATGAAGCATCAGCTATAGG+TGG | 0.681407 | 1_3:+46117201 | Msa0120870:CDS |
| CTTGCTGAGATTGAGACGTG+CGG | 0.690178 | 1_3:-46118258 | None:intergenic |
| TGAGCAATTATAGTTCCTAG+GGG | 0.695557 | 1_3:+46119543 | Msa0120870:three_prime_UTR |
| TGAGGTACCAACCAAATTGG+GGG | 0.710225 | 1_3:+46118805 | Msa0120870:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTACATTACATAGATTAATA+GGG | - | chr1_3:46117521-46117540 | None:intergenic | 15.0% |
| !! | AATTCAGAAACTAATATTAT+TGG | + | chr1_3:46119005-46119024 | Msa0120870:CDS | 15.0% |
| !! | AAAGATGAAGAAGAAAATTT+GGG | - | chr1_3:46117174-46117193 | None:intergenic | 20.0% |
| !!! | TCAAATGTTTTTGAAAGAAA+TGG | - | chr1_3:46117285-46117304 | None:intergenic | 20.0% |
| !! | TCTTTCAAAAACATTTGATT+TGG | + | chr1_3:46117287-46117306 | Msa0120870:CDS | 20.0% |
| !! | TACATTACATAGATTAATAG+GGG | - | chr1_3:46117520-46117539 | None:intergenic | 20.0% |
| !! | GTTACATTACATAGATTAAT+AGG | - | chr1_3:46117522-46117541 | None:intergenic | 20.0% |
| !! | AACAATTTGATGTATCAATT+GGG | + | chr1_3:46117635-46117654 | Msa0120870:intron | 20.0% |
| !! | TTATTCATTCTCAGATAATT+TGG | + | chr1_3:46118130-46118149 | Msa0120870:intron | 20.0% |
| !!! | AACATTTTTTCCTTTGAAAA+GGG | - | chr1_3:46119063-46119082 | None:intergenic | 20.0% |
| !!! | TAACATTTTTTCCTTTGAAA+AGG | - | chr1_3:46119064-46119083 | None:intergenic | 20.0% |
| !!! | TTATGAATCAAGATTTTCTT+AGG | - | chr1_3:46119396-46119415 | None:intergenic | 20.0% |
| !! | AAAATCTTGATTCATAAGTT+TGG | + | chr1_3:46119399-46119418 | Msa0120870:three_prime_UTR | 20.0% |
| !! | ATTACATTCAATCAATTCAT+CGG | + | chr1_3:46119689-46119708 | Msa0120870:three_prime_UTR | 20.0% |
| !! | TTTAAGTAATTTAGTATCAG+CGG | + | chr1_3:46119723-46119742 | Msa0120870:three_prime_UTR | 20.0% |
| ! | CAAAGATGAAGAAGAAAATT+TGG | - | chr1_3:46117175-46117194 | None:intergenic | 25.0% |
| !! | ATTTTCTTCTTCATCTTTGA+TGG | + | chr1_3:46117176-46117195 | Msa0120870:CDS | 25.0% |
| !!! | AATGTTTTTGAAAGAAATGG+TGG | - | chr1_3:46117282-46117301 | None:intergenic | 25.0% |
| ! | TTCAATCAACAAACACAAAA+GGG | - | chr1_3:46117617-46117636 | None:intergenic | 25.0% |
| ! | GAACAATTTGATGTATCAAT+TGG | + | chr1_3:46117634-46117653 | Msa0120870:intron | 25.0% |
| !!! | TAAGCTTGTCTTTTTTGTTT+TGG | + | chr1_3:46117988-46118007 | Msa0120870:intron | 25.0% |
| ! | AGAATGAATAAACCAAACAT+AGG | - | chr1_3:46118121-46118140 | None:intergenic | 25.0% |
| !! | TCACATCAAACCTTTTATAT+AGG | + | chr1_3:46118365-46118384 | Msa0120870:intron | 25.0% |
| !!! | AGTTTGTTAGCCTATATAAA+AGG | - | chr1_3:46118378-46118397 | None:intergenic | 25.0% |
| !! | TGACATTTTCTTCTTCATTT+TGG | - | chr1_3:46118770-46118789 | None:intergenic | 25.0% |
| !!! | ACATTTTTTCCTTTGAAAAG+GGG | - | chr1_3:46119062-46119081 | None:intergenic | 25.0% |
| !! | TTATTCCTGAGAATTTTGAA+GGG | + | chr1_3:46119102-46119121 | Msa0120870:CDS | 25.0% |
| ! | TTATCAAGCAAGAAGATATA+TGG | + | chr1_3:46119150-46119169 | Msa0120870:CDS | 25.0% |
| ! | TATCAAGCAAGAAGATATAT+GGG | + | chr1_3:46119151-46119170 | Msa0120870:CDS | 25.0% |
| ! | TGACTATCTATTTCATCAAA+AGG | - | chr1_3:46119350-46119369 | None:intergenic | 25.0% |
| ! | TTTGATGAAATAGATAGTCA+AGG | + | chr1_3:46119350-46119369 | Msa0120870:CDS | 25.0% |
| ! | AAAGAGAGTAACAAAAATTG+TGG | - | chr1_3:46119636-46119655 | None:intergenic | 25.0% |
| ! | TTACATTCAATCAATTCATC+GGG | + | chr1_3:46119690-46119709 | Msa0120870:three_prime_UTR | 25.0% |
| !!! | GGAGAGTTTTTTTCATCATT+TGG | - | chr1_3:46117153-46117172 | None:intergenic | 30.0% |
| ATATGATCGGATTCAAAGAA+GGG | - | chr1_3:46117320-46117339 | None:intergenic | 30.0% | |
| TCAATCAACAAACACAAAAG+GGG | - | chr1_3:46117616-46117635 | None:intergenic | 30.0% | |
| GTTCAATCAACAAACACAAA+AGG | - | chr1_3:46117618-46117637 | None:intergenic | 30.0% | |
| !! | TGTGTTTTTGTTACTACTAG+TGG | + | chr1_3:46117729-46117748 | Msa0120870:intron | 30.0% |
| AGATGAAAATCCCTTGAAAA+GGG | - | chr1_3:46117886-46117905 | None:intergenic | 30.0% | |
| AAGATGAAAATCCCTTGAAA+AGG | - | chr1_3:46117887-46117906 | None:intergenic | 30.0% | |
| TACAATACAGTTAGCTGTAT+TGG | - | chr1_3:46118031-46118050 | None:intergenic | 30.0% | |
| ATTGAAAAACTCCCATTTGT+CGG | - | chr1_3:46118188-46118207 | None:intergenic | 30.0% | |
| !! | AAATGGGAGTTTTTCAATGA+AGG | + | chr1_3:46118190-46118209 | Msa0120870:CDS | 30.0% |
| ! | TTCAATGAAGGTTTTCAGAA+AGG | + | chr1_3:46118202-46118221 | Msa0120870:CDS | 30.0% |
| !! | ACTTGTTGAAAAGCATTCAA+AGG | + | chr1_3:46118233-46118252 | Msa0120870:CDS | 30.0% |
| TAACTGTATCTCTAATAGCA+GGG | + | chr1_3:46118469-46118488 | Msa0120870:intron | 30.0% | |
| TGAACAAAGACAGAAACAAA+TGG | + | chr1_3:46118629-46118648 | Msa0120870:CDS | 30.0% | |
| GAAACAAATGGTATCTTTCT+TGG | + | chr1_3:46118641-46118660 | Msa0120870:CDS | 30.0% | |
| ACAAACTTTCTTCTAACTCT+TGG | - | chr1_3:46118738-46118757 | None:intergenic | 30.0% | |
| GAAGAAGAAAATGTCAAAGA+TGG | + | chr1_3:46118774-46118793 | Msa0120870:CDS | 30.0% | |
| CTACCTAAAGAAATGACTAA+AGG | + | chr1_3:46118906-46118925 | Msa0120870:CDS | 30.0% | |
| TCACCTTTAGTCATTTCTTT+AGG | - | chr1_3:46118912-46118931 | None:intergenic | 30.0% | |
| GAAACTAATATTATTGGCGA+AGG | + | chr1_3:46119011-46119030 | Msa0120870:CDS | 30.0% | |
| TCAGGAATAACTTCTTCATT+TGG | - | chr1_3:46119092-46119111 | None:intergenic | 30.0% | |
| ! | GTTATTCCTGAGAATTTTGA+AGG | + | chr1_3:46119101-46119120 | Msa0120870:CDS | 30.0% |
| TTTGAAGGGTTTCAATCTAT+TGG | + | chr1_3:46119116-46119135 | Msa0120870:CDS | 30.0% | |
| TTGAAGGGTTTCAATCTATT+GGG | + | chr1_3:46119117-46119136 | Msa0120870:CDS | 30.0% | |
| TCAGATACTCCATAATTCAT+AGG | - | chr1_3:46119236-46119255 | None:intergenic | 30.0% | |
| ! | AATTATGGAGTATCTGACTT+TGG | + | chr1_3:46119239-46119258 | Msa0120870:CDS | 30.0% |
| !!! | GATATTGGTTTTGGAAGTTT+GGG | + | chr1_3:46119296-46119315 | Msa0120870:CDS | 30.0% |
| !! | GAAGTTTGGGTATTGATAAT+TGG | + | chr1_3:46119309-46119328 | Msa0120870:CDS | 30.0% |
| ! | GAATCAAGATTTTCTTAGGT+AGG | - | chr1_3:46119392-46119411 | None:intergenic | 30.0% |
| ! | TTTTGGCAGAAGTTACATTT+CGG | + | chr1_3:46119446-46119465 | Msa0120870:three_prime_UTR | 30.0% |
| TCGGAGTTTCAATAAAATCA+CGG | + | chr1_3:46119465-46119484 | Msa0120870:three_prime_UTR | 30.0% | |
| TAGGAACTATAATTGCTCAA+AGG | - | chr1_3:46119542-46119561 | None:intergenic | 30.0% | |
| TTTGAGCAATTATAGTTCCT+AGG | + | chr1_3:46119541-46119560 | Msa0120870:three_prime_UTR | 30.0% | |
| TTGAGCAATTATAGTTCCTA+GGG | + | chr1_3:46119542-46119561 | Msa0120870:three_prime_UTR | 30.0% | |
| TATTCAATAATATGACCCCT+AGG | - | chr1_3:46119561-46119580 | None:intergenic | 30.0% | |
| ! | GAATATGAAGCATCAGCTAT+AGG | + | chr1_3:46117198-46117217 | Msa0120870:CDS | 35.0% |
| ! | TTGAAAGAAATGGTGGAACT+GGG | - | chr1_3:46117275-46117294 | None:intergenic | 35.0% |
| ! | TTTGAAAGAAATGGTGGAAC+TGG | - | chr1_3:46117276-46117295 | None:intergenic | 35.0% |
| GATATGATCGGATTCAAAGA+AGG | - | chr1_3:46117321-46117340 | None:intergenic | 35.0% | |
| CTTTGAATCCGATCATATCA+TGG | + | chr1_3:46117322-46117341 | Msa0120870:CDS | 35.0% | |
| TTGGAACTCCATGATATGAT+CGG | - | chr1_3:46117333-46117352 | None:intergenic | 35.0% | |
| ATCATATCATGGAGTTCCAA+TGG | + | chr1_3:46117333-46117352 | Msa0120870:CDS | 35.0% | |
| AACAACAAAGCTAACACCAT+TGG | - | chr1_3:46117352-46117371 | None:intergenic | 35.0% | |
| !! | ATGGTGTTAGCTTTGTTGTT+TGG | + | chr1_3:46117352-46117371 | Msa0120870:CDS | 35.0% |
| !! | TGGTGTTAGCTTTGTTGTTT+GGG | + | chr1_3:46117353-46117372 | Msa0120870:CDS | 35.0% |
| ATAACTCTTGCAAACTCCAA+AGG | - | chr1_3:46117381-46117400 | None:intergenic | 35.0% | |
| ! | TTGTTGTGTTTGAAGTGTCT+AGG | - | chr1_3:46117408-46117427 | None:intergenic | 35.0% |
| ATTAAGCTGACGAACAAAAC+TGG | - | chr1_3:46117436-46117455 | None:intergenic | 35.0% | |
| TCGTCAGCTTAATACTTATG+TGG | + | chr1_3:46117443-46117462 | Msa0120870:CDS | 35.0% | |
| CGTCAGCTTAATACTTATGT+GGG | + | chr1_3:46117444-46117463 | Msa0120870:CDS | 35.0% | |
| ! | ACTTTTCACAATGCCTCTAA+TGG | + | chr1_3:46117494-46117513 | Msa0120870:intron | 35.0% |
| CAATCAACAAACACAAAAGG+GGG | - | chr1_3:46117615-46117634 | None:intergenic | 35.0% | |
| ACTACACAATGCAATCAATC+AGG | - | chr1_3:46117805-46117824 | None:intergenic | 35.0% | |
| TTTCTTGAGTCTCCTATGTT+TGG | + | chr1_3:46118106-46118125 | Msa0120870:intron | 35.0% | |
| !! | ATAATTTGGTGTTTGAGCAC+AGG | + | chr1_3:46118144-46118163 | Msa0120870:intron | 35.0% |
| !! | TAATTTGGTGTTTGAGCACA+GGG | + | chr1_3:46118145-46118164 | Msa0120870:intron | 35.0% |
| CTAACTGTATCTCTAATAGC+AGG | + | chr1_3:46118468-46118487 | Msa0120870:intron | 35.0% | |
| AGGTTGAGATTGAAAGATTG+AGG | + | chr1_3:46118505-46118524 | Msa0120870:CDS | 35.0% | |
| TGAGATTGAAAGATTGAGGA+AGG | + | chr1_3:46118509-46118528 | Msa0120870:CDS | 35.0% | |
| TCAAAGATGGAAAGATAGTG+AGG | + | chr1_3:46118787-46118806 | Msa0120870:CDS | 35.0% | |
| ATGTCTATATTCCCCCAATT+TGG | - | chr1_3:46118819-46118838 | None:intergenic | 35.0% | |
| ! | ATAGTGAGGAGAGTTTTCAA+TGG | - | chr1_3:46118874-46118893 | None:intergenic | 35.0% |
| AGATCAAGTGAAAGATAGTG+AGG | - | chr1_3:46118888-46118907 | None:intergenic | 35.0% | |
| TGAAACCCTTCAAAATTCTC+AGG | - | chr1_3:46119110-46119129 | None:intergenic | 35.0% | |
| ATGTGGGATCCTATGAATTA+TGG | + | chr1_3:46119224-46119243 | Msa0120870:CDS | 35.0% | |
| ATGTCAGATATGTGGGATAT+TGG | + | chr1_3:46119281-46119300 | Msa0120870:CDS | 35.0% | |
| !!! | GATATGTGGGATATTGGTTT+TGG | + | chr1_3:46119287-46119306 | Msa0120870:CDS | 35.0% |
| !!! | GGATATTGGTTTTGGAAGTT+TGG | + | chr1_3:46119295-46119314 | Msa0120870:CDS | 35.0% |
| GATGAAATAGATAGTCAAGG+TGG | + | chr1_3:46119353-46119372 | Msa0120870:CDS | 35.0% | |
| TGTAACTTCTGCCAAAATCA+TGG | - | chr1_3:46119443-46119462 | None:intergenic | 35.0% | |
| TGAGCAATTATAGTTCCTAG+GGG | + | chr1_3:46119543-46119562 | Msa0120870:three_prime_UTR | 35.0% | |
| ! | TATGAAGCATCAGCTATAGG+TGG | + | chr1_3:46117201-46117220 | Msa0120870:CDS | 40.0% |
| !! | CTTTGTTGTTTGGGATCCTT+TGG | + | chr1_3:46117362-46117381 | Msa0120870:CDS | 40.0% |
| AGATTAATAGGGGCCATTAG+AGG | - | chr1_3:46117510-46117529 | None:intergenic | 40.0% | |
| ACACAATGCAATCAATCAGG+AGG | - | chr1_3:46117802-46117821 | None:intergenic | 40.0% | |
| ! | AATGTTGCTCTCCCTTTTCA+AGG | + | chr1_3:46117872-46117891 | Msa0120870:CDS | 40.0% |
| ! | ATGTTGCTCTCCCTTTTCAA+GGG | + | chr1_3:46117873-46117892 | Msa0120870:CDS | 40.0% |
| ! | CAAGGGATTTTCATCTTCCA+AGG | + | chr1_3:46117890-46117909 | Msa0120870:CDS | 40.0% |
| ! | GGATTTTCATCTTCCAAGGT+AGG | + | chr1_3:46117894-46117913 | Msa0120870:intron | 40.0% |
| TGAAACACAGAATCCTACCT+TGG | - | chr1_3:46117910-46117929 | None:intergenic | 40.0% | |
| !! | ATTTGTCGGTGTCAATCTTG+CGG | - | chr1_3:46118174-46118193 | None:intergenic | 40.0% |
| CAAGATTGACACCGACAAAT+GGG | + | chr1_3:46118174-46118193 | Msa0120870:CDS | 40.0% | |
| !! | CAGCAAGTTGGTAACTATGT+TGG | + | chr1_3:46118274-46118293 | Msa0120870:CDS | 40.0% |
| TCTCTAATAGCAGGGAAATC+TGG | + | chr1_3:46118477-46118496 | Msa0120870:intron | 40.0% | |
| TTGAAAGATTGAGGAAGGAG+AGG | + | chr1_3:46118514-46118533 | Msa0120870:CDS | 40.0% | |
| GACTGTGTTAATGCAAGAAG+TGG | + | chr1_3:46118536-46118555 | Msa0120870:CDS | 40.0% | |
| ACGCAGGTAATGTGAATCAA+AGG | + | chr1_3:46118595-46118614 | Msa0120870:CDS | 40.0% | |
| !! | GGCCAAGTTGTTTTCAAATC+CGG | + | chr1_3:46118662-46118681 | Msa0120870:CDS | 40.0% |
| GTCCGGATTTGAAAACAACT+TGG | - | chr1_3:46118667-46118686 | None:intergenic | 40.0% | |
| TTAAGTCGCGCTAAAAAGTC+CGG | - | chr1_3:46118684-46118703 | None:intergenic | 40.0% | |
| ! | TAGTGAGGTACCAACCAAAT+TGG | + | chr1_3:46118802-46118821 | Msa0120870:CDS | 40.0% |
| ! | AGTGAGGTACCAACCAAATT+GGG | + | chr1_3:46118803-46118822 | Msa0120870:CDS | 40.0% |
| CTATATTCCCCCAATTTGGT+TGG | - | chr1_3:46118815-46118834 | None:intergenic | 40.0% | |
| ! | GGAGAGTTTTCAATGGAAAC+TGG | - | chr1_3:46118867-46118886 | None:intergenic | 40.0% |
| GATGAATATGCTGCAATGCA+TGG | + | chr1_3:46118969-46118988 | Msa0120870:CDS | 40.0% | |
| ! | CTTGATGAACCCCTTTTCAA+AGG | + | chr1_3:46119050-46119069 | Msa0120870:CDS | 40.0% |
| CAGCACCAACATTGAAGTTA+GGG | - | chr1_3:46119178-46119197 | None:intergenic | 40.0% | |
| ACAGCACCAACATTGAAGTT+AGG | - | chr1_3:46119179-46119198 | None:intergenic | 40.0% | |
| ! | CTGTTGCTACTTCAAACTGT+GGG | + | chr1_3:46119195-46119214 | Msa0120870:CDS | 40.0% |
| AAACTGTGGGAATGAGATGT+GGG | + | chr1_3:46119208-46119227 | Msa0120870:CDS | 40.0% | |
| !! | GACTTTGGAGTTGTTACAAG+TGG | + | chr1_3:46119254-46119273 | Msa0120870:CDS | 40.0% |
| TGGTGACATGTCAGATATGT+GGG | + | chr1_3:46119274-46119293 | Msa0120870:CDS | 40.0% | |
| TCAAAAGGAGATTCATCAGC+TGG | - | chr1_3:46119335-46119354 | None:intergenic | 40.0% | |
| TGCTCAAAGGCAACAATTGT+AGG | - | chr1_3:46119529-46119548 | None:intergenic | 40.0% | |
| CATTCAATCAATTCATCGGG+TGG | + | chr1_3:46119693-46119712 | Msa0120870:three_prime_UTR | 40.0% | |
| TAGTGATGTTCCTGTGCCTA+TGG | + | chr1_3:46117233-46117252 | Msa0120870:CDS | 45.0% | |
| CTCATCTGCAAACACTCCAT+AGG | - | chr1_3:46117252-46117271 | None:intergenic | 45.0% | |
| ACAAACACAAAAGGGGGAGA+GGG | - | chr1_3:46117609-46117628 | None:intergenic | 45.0% | |
| AACAAACACAAAAGGGGGAG+AGG | - | chr1_3:46117610-46117629 | None:intergenic | 45.0% | |
| ATGTTGCCAATTCCAGCAGT+AGG | - | chr1_3:46117845-46117864 | None:intergenic | 45.0% | |
| ACTGCTGGAATTGGCAACAT+AGG | + | chr1_3:46117845-46117864 | Msa0120870:CDS | 45.0% | |
| GCAAGATTGACACCGACAAA+TGG | + | chr1_3:46118173-46118192 | Msa0120870:CDS | 45.0% | |
| ACGTCTCAATCTCAGCAAGT+TGG | + | chr1_3:46118262-46118281 | Msa0120870:CDS | 45.0% | |
| GTTGGATCTTCTTCTGATGC+AGG | + | chr1_3:46118292-46118311 | Msa0120870:CDS | 45.0% | |
| ACAGCAGCAACAACGAATGA+CGG | + | chr1_3:46118566-46118585 | Msa0120870:CDS | 45.0% | |
| ! | GTGAGGTACCAACCAAATTG+GGG | + | chr1_3:46118804-46118823 | Msa0120870:CDS | 45.0% |
| ! | TGAGGTACCAACCAAATTGG+GGG | + | chr1_3:46118805-46118824 | Msa0120870:CDS | 45.0% |
| !! | GGCGAAGGATCATCTAGTTT+TGG | + | chr1_3:46119026-46119045 | Msa0120870:CDS | 45.0% |
| TGGGACCCTAACTTCAATGT+TGG | + | chr1_3:46119170-46119189 | Msa0120870:CDS | 45.0% | |
| ! | GCTGTTGCTACTTCAAACTG+TGG | + | chr1_3:46119194-46119213 | Msa0120870:CDS | 45.0% |
| CAAACTGTGGGAATGAGATG+TGG | + | chr1_3:46119207-46119226 | Msa0120870:CDS | 45.0% | |
| GTGGTGACATGTCAGATATG+TGG | + | chr1_3:46119273-46119292 | Msa0120870:CDS | 45.0% | |
| AAGTTTGGCAGAATCACGAC+CGG | + | chr1_3:46119414-46119433 | Msa0120870:three_prime_UTR | 45.0% | |
| TCTGCCAAAATCATGGAAGC+CGG | - | chr1_3:46119436-46119455 | None:intergenic | 45.0% | |
| !!! | TATTTTTTCTTTTTTTTTTT+TGG | + | chr1_3:46117552-46117571 | Msa0120870:intron | 5.0% |
| ! | GAAGCATCAGCTATAGGTGG+TGG | + | chr1_3:46117204-46117223 | Msa0120870:CDS | 50.0% |
| ! | TCAGCTATAGGTGGTGGTAC+TGG | + | chr1_3:46117210-46117229 | Msa0120870:CDS | 50.0% |
| TGCAAACACTCCATAGGCAC+AGG | - | chr1_3:46117246-46117265 | None:intergenic | 50.0% | |
| CATTCAGAGACTCCTACTGC+TGG | + | chr1_3:46117830-46117849 | Msa0120870:CDS | 50.0% | |
| GAGACTCCTACTGCTGGAAT+TGG | + | chr1_3:46117836-46117855 | Msa0120870:CDS | 50.0% | |
| CTTGCTGAGATTGAGACGTG+CGG | - | chr1_3:46118261-46118280 | None:intergenic | 50.0% | |
| AGCGCGACTTAAGCAGAAGA+AGG | + | chr1_3:46118692-46118711 | Msa0120870:CDS | 50.0% | |
| !! | ACGACCGGCTTCCATGATTT+TGG | + | chr1_3:46119429-46119448 | Msa0120870:three_prime_UTR | 50.0% |
| ! | AGCAGGGAAATCTGGAGTCG+AGG | + | chr1_3:46118485-46118504 | Msa0120870:intron | 55.0% |
| ! | CGAATGACGGCTAGTCACGC+AGG | + | chr1_3:46118579-46118598 | Msa0120870:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 46117144 | 46119759 | 46117144 | ID=Msa0120870;Name=Msa0120870 |
| chr1_3 | mRNA | 46117144 | 46119759 | 46117144 | ID=Msa0120870-mRNA-1;Parent=Msa0120870;Name=Msa0120870-mRNA-1;_AED=0.05;_eAED=0.07;_QI=0|0.25|0.4|1|1|1|5|362|500 |
| chr1_3 | exon | 46117144 | 46117465 | 46117144 | ID=Msa0120870-mRNA-1:exon:13859;Parent=Msa0120870-mRNA-1 |
| chr1_3 | exon | 46117824 | 46117911 | 46117824 | ID=Msa0120870-mRNA-1:exon:13860;Parent=Msa0120870-mRNA-1 |
| chr1_3 | exon | 46118018 | 46118054 | 46118018 | ID=Msa0120870-mRNA-1:exon:13861;Parent=Msa0120870-mRNA-1 |
| chr1_3 | exon | 46118166 | 46118313 | 46118166 | ID=Msa0120870-mRNA-1:exon:13862;Parent=Msa0120870-mRNA-1 |
| chr1_3 | exon | 46118490 | 46119759 | 46118490 | ID=Msa0120870-mRNA-1:exon:13863;Parent=Msa0120870-mRNA-1 |
| chr1_3 | CDS | 46117144 | 46117465 | 46117144 | ID=Msa0120870-mRNA-1:cds;Parent=Msa0120870-mRNA-1 |
| chr1_3 | CDS | 46117824 | 46117911 | 46117824 | ID=Msa0120870-mRNA-1:cds;Parent=Msa0120870-mRNA-1 |
| chr1_3 | CDS | 46118018 | 46118054 | 46118018 | ID=Msa0120870-mRNA-1:cds;Parent=Msa0120870-mRNA-1 |
| chr1_3 | CDS | 46118166 | 46118313 | 46118166 | ID=Msa0120870-mRNA-1:cds;Parent=Msa0120870-mRNA-1 |
| chr1_3 | CDS | 46118490 | 46119397 | 46118490 | ID=Msa0120870-mRNA-1:cds;Parent=Msa0120870-mRNA-1 |
| chr1_3 | three_prime_UTR | 46119398 | 46119759 | 46119398 | ID=Msa0120870-mRNA-1:three_prime_utr;Parent=Msa0120870-mRNA-1 |
| Gene Sequence |
| Protein sequence |
