Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0072430 | XP_013468064.1 | 85.857 | 502 | 26 | 2 | 1 | 500 | 1 | 459 | 0.0 | 854 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0072430 | sp|Q8GYY1|HSFA3_ARATH | 50.167 | 299 | 102 | 3 | 27 | 321 | 35 | 290 | 1.56e-88 | 280 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0072430 | A0A072VKE1 | 85.857 | 502 | 26 | 2 | 1 | 500 | 1 | 459 | 0.0 | 854 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0072430 | TF | HSF |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0024940 | Msa0072430 | 0.958663 | 1.347210e-116 | -8.615850e-47 |
| Msa0072430 | Msa0120870 | 0.968608 | 6.407578e-129 | -8.615850e-47 |
| Msa0072430 | Msa0343510 | 0.898940 | 3.240710e-77 | -8.615850e-47 |
| Msa0072430 | Msa0376700 | 0.826401 | 2.767653e-54 | -8.615850e-47 |
| Msa0072430 | Msa0425830 | 0.836092 | 1.145978e-56 | -8.615850e-47 |
| Msa0072430 | Msa0472290 | 0.815212 | 1.037592e-51 | -8.615850e-47 |
| Msa0072430 | Msa0554530 | 0.806857 | 6.709099e-50 | -8.615850e-47 |
| Msa0072430 | Msa0602620 | 0.812289 | 4.568736e-51 | -8.615850e-47 |
| Msa0072430 | Msa0683380 | 0.807973 | 3.890483e-50 | -8.615850e-47 |
| Msa0072430 | Msa1128260 | 0.821949 | 3.075647e-53 | -8.615850e-47 |
| Msa0072430 | Msa1411850 | 0.824993 | 5.971088e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0072430 | MtrunA17_Chr1g0179311 | 94.017 | 351 | 21 | 0 | 150 | 500 | 14 | 364 | 0.0 | 681 |
| Msa0072430 | MtrunA17_Chr1g0179321 | 94.444 | 108 | 4 | 1 | 1 | 106 | 1 | 108 | 1.57e-65 | 207 |
| Msa0072430 | MtrunA17_Chr5g0410881 | 41.781 | 292 | 113 | 4 | 31 | 308 | 16 | 264 | 3.04e-65 | 219 |
| Msa0072430 | MtrunA17_Chr3g0135831 | 36.591 | 399 | 181 | 11 | 33 | 426 | 32 | 363 | 3.47e-64 | 213 |
| Msa0072430 | MtrunA17_Chr1g0204741 | 42.857 | 273 | 106 | 5 | 25 | 290 | 15 | 244 | 2.21e-61 | 204 |
| Msa0072430 | MtrunA17_Chr7g0260331 | 39.677 | 310 | 136 | 5 | 13 | 315 | 16 | 281 | 6.17e-61 | 204 |
| Msa0072430 | MtrunA17_Chr4g0039891 | 36.127 | 346 | 151 | 7 | 45 | 366 | 10 | 309 | 1.86e-60 | 206 |
| Msa0072430 | MtrunA17_Chr4g0071051 | 38.077 | 260 | 113 | 2 | 17 | 276 | 71 | 282 | 5.71e-52 | 182 |
| Msa0072430 | MtrunA17_Chr1g0185131 | 41.631 | 233 | 84 | 3 | 34 | 266 | 19 | 199 | 2.53e-49 | 172 |
| Msa0072430 | MtrunA17_Chr6g0467041 | 34.286 | 245 | 111 | 4 | 45 | 287 | 20 | 216 | 2.88e-39 | 145 |
| Msa0072430 | MtrunA17_Chr8g0378061 | 30.833 | 360 | 173 | 11 | 48 | 390 | 23 | 323 | 1.01e-38 | 147 |
| Msa0072430 | MtrunA17_Chr8g0379701 | 34.978 | 223 | 100 | 2 | 43 | 263 | 8 | 187 | 1.73e-38 | 145 |
| Msa0072430 | MtrunA17_Chr8g0392001 | 33.121 | 314 | 148 | 7 | 45 | 349 | 20 | 280 | 2.53e-38 | 144 |
| Msa0072430 | MtrunA17_Chr2g0330821 | 35.345 | 232 | 105 | 2 | 47 | 278 | 79 | 265 | 4.86e-37 | 140 |
| Msa0072430 | MtrunA17_Chr6g0485571 | 32.780 | 241 | 117 | 3 | 45 | 285 | 9 | 204 | 1.38e-36 | 138 |
| Msa0072430 | MtrunA17_Chr3g0134031 | 46.853 | 143 | 33 | 1 | 47 | 189 | 24 | 123 | 3.49e-32 | 127 |
| Msa0072430 | MtrunA17_Chr2g0284481 | 29.958 | 237 | 111 | 3 | 45 | 276 | 13 | 199 | 1.70e-31 | 125 |
| Msa0072430 | MtrunA17_Chr5g0397881 | 43.262 | 141 | 37 | 1 | 41 | 181 | 18 | 115 | 3.62e-31 | 123 |
| Msa0072430 | MtrunA17_Chr7g0257331 | 35.644 | 202 | 76 | 2 | 37 | 227 | 12 | 170 | 5.55e-31 | 120 |
| Msa0072430 | MtrunA17_Chr5g0402291 | 33.065 | 248 | 108 | 5 | 41 | 273 | 3 | 207 | 1.53e-30 | 120 |
| Msa0072430 | MtrunA17_Chr5g0441531 | 34.466 | 206 | 71 | 3 | 41 | 225 | 19 | 181 | 3.58e-28 | 112 |
| Msa0072430 | MtrunA17_Chr6g0472421 | 42.222 | 135 | 35 | 1 | 47 | 181 | 33 | 124 | 1.60e-27 | 113 |
| Msa0072430 | MtrunA17_Chr1g0203601 | 32.710 | 214 | 72 | 3 | 41 | 225 | 12 | 182 | 3.04e-27 | 111 |
| Msa0072430 | MtrunA17_Chr8g0375041 | 32.710 | 214 | 82 | 4 | 44 | 239 | 6 | 175 | 1.62e-26 | 108 |
| Msa0072430 | MtrunA17_Chr4g0047421 | 32.620 | 187 | 78 | 3 | 46 | 228 | 32 | 174 | 1.09e-23 | 99.0 |
| Msa0072430 | MtrunA17_Chr4g0023771 | 53.425 | 73 | 34 | 0 | 45 | 117 | 13 | 85 | 5.02e-20 | 85.5 |
| Msa0072430 | MtrunA17_Chr2g0330841 | 35.714 | 140 | 88 | 1 | 148 | 287 | 39 | 176 | 2.66e-19 | 90.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0072430 | AT5G03720.2 | 50.167 | 299 | 102 | 3 | 27 | 321 | 35 | 290 | 1.58e-89 | 280 |
| Msa0072430 | AT5G03720.1 | 50.167 | 299 | 102 | 3 | 27 | 321 | 35 | 290 | 1.58e-89 | 280 |
| Msa0072430 | AT5G16820.1 | 35.765 | 425 | 186 | 10 | 45 | 448 | 25 | 383 | 2.43e-63 | 214 |
| Msa0072430 | AT5G16820.2 | 35.765 | 425 | 186 | 10 | 45 | 448 | 25 | 383 | 2.43e-63 | 214 |
| Msa0072430 | AT1G32330.1 | 39.032 | 310 | 123 | 5 | 22 | 308 | 7 | 273 | 1.16e-61 | 209 |
| Msa0072430 | AT1G32330.2 | 39.032 | 310 | 123 | 5 | 22 | 308 | 7 | 273 | 1.24e-61 | 209 |
| Msa0072430 | AT3G02990.1 | 40.777 | 309 | 121 | 6 | 42 | 336 | 18 | 278 | 2.82e-60 | 205 |
| Msa0072430 | AT4G17750.1 | 38.318 | 321 | 119 | 7 | 24 | 308 | 19 | 296 | 8.05e-58 | 199 |
| Msa0072430 | AT3G22830.1 | 37.107 | 318 | 138 | 6 | 23 | 328 | 37 | 304 | 7.98e-57 | 194 |
| Msa0072430 | AT2G26150.1 | 41.313 | 259 | 101 | 4 | 34 | 285 | 31 | 245 | 2.00e-55 | 189 |
| Msa0072430 | AT2G26150.4 | 41.313 | 259 | 101 | 4 | 34 | 285 | 31 | 245 | 2.00e-55 | 189 |
| Msa0072430 | AT3G63350.1 | 40.984 | 244 | 99 | 2 | 34 | 277 | 15 | 213 | 1.16e-53 | 182 |
| Msa0072430 | AT3G51910.1 | 39.370 | 254 | 93 | 4 | 37 | 285 | 19 | 216 | 1.31e-49 | 171 |
| Msa0072430 | AT5G43840.1 | 35.294 | 289 | 123 | 6 | 32 | 317 | 4 | 231 | 8.85e-48 | 167 |
| Msa0072430 | AT5G54070.1 | 33.333 | 264 | 122 | 4 | 41 | 300 | 65 | 278 | 1.71e-42 | 154 |
| Msa0072430 | AT1G67970.1 | 34.701 | 268 | 128 | 4 | 45 | 308 | 17 | 241 | 2.09e-41 | 152 |
| Msa0072430 | AT4G13980.1 | 33.333 | 240 | 115 | 2 | 48 | 287 | 24 | 218 | 1.14e-39 | 150 |
| Msa0072430 | AT3G24520.1 | 36.797 | 231 | 82 | 5 | 45 | 275 | 15 | 181 | 7.75e-37 | 139 |
| Msa0072430 | AT5G45710.3 | 32.627 | 236 | 114 | 2 | 43 | 276 | 9 | 201 | 2.62e-34 | 132 |
| Msa0072430 | AT5G45710.1 | 32.627 | 236 | 114 | 2 | 43 | 276 | 9 | 201 | 2.62e-34 | 132 |
| Msa0072430 | AT4G18880.1 | 35.652 | 230 | 102 | 2 | 43 | 269 | 11 | 197 | 1.05e-32 | 129 |
| Msa0072430 | AT5G62020.1 | 40.541 | 148 | 45 | 1 | 41 | 188 | 17 | 121 | 7.77e-30 | 119 |
| Msa0072430 | AT1G46264.1 | 44.928 | 138 | 33 | 1 | 47 | 184 | 34 | 128 | 1.13e-29 | 119 |
| Msa0072430 | AT4G11660.1 | 42.361 | 144 | 40 | 1 | 41 | 184 | 53 | 153 | 3.43e-29 | 119 |
| Msa0072430 | AT4G36990.1 | 30.588 | 255 | 125 | 4 | 35 | 280 | 2 | 213 | 5.95e-29 | 116 |
| Msa0072430 | AT2G26150.3 | 46.154 | 143 | 69 | 3 | 150 | 285 | 49 | 190 | 7.98e-29 | 115 |
| Msa0072430 | AT2G26150.2 | 46.154 | 143 | 69 | 3 | 150 | 285 | 49 | 190 | 7.98e-29 | 115 |
| Msa0072430 | AT2G41690.1 | 40.141 | 142 | 42 | 1 | 41 | 182 | 34 | 132 | 1.29e-27 | 111 |
Find 110 sgRNAs with CRISPR-Local
Find 169 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAAAGATGAAGAAGAAAATT+TGG | 0.205164 | 1_2:+45355128 | None:intergenic |
| AATTCAGAAACTAATATTAT+TGG | 0.214900 | 1_2:-45353301 | Msa0072430:CDS |
| ACGACCGGCTTCCATGATTT+TGG | 0.229018 | 1_2:-45352877 | Msa0072430:three_prime_UTR |
| TTTGAAGGGTTTCAATCTAT+TGG | 0.240093 | 1_2:-45353190 | Msa0072430:CDS |
| GAAGTTTGGGTATTGATAAT+TGG | 0.249663 | 1_2:-45352997 | Msa0072430:CDS |
| GAAACAAATGGTATCTTTCT+TGG | 0.279705 | 1_2:-45353665 | Msa0072430:CDS |
| CTTTGTTGTTTGGGATCCTT+TGG | 0.287745 | 1_2:-45354938 | Msa0072430:CDS |
| TCACCTTTAGTCATTTCTTT+AGG | 0.294012 | 1_2:+45353397 | None:intergenic |
| GATATGTGGGATATTGGTTT+TGG | 0.304447 | 1_2:-45353019 | Msa0072430:CDS |
| TTATCAAGCAAGAAGATATA+TGG | 0.310553 | 1_2:-45353156 | Msa0072430:CDS |
| TAGTGAGGTACCAACCAAAT+TGG | 0.312029 | 1_2:-45353504 | Msa0072430:CDS |
| ATGTGGGATCCTTTGAATTA+TGG | 0.316094 | 1_2:-45353082 | Msa0072430:CDS |
| TGGTGTTAGCTTTGTTGTTT+GGG | 0.316297 | 1_2:-45354947 | Msa0072430:CDS |
| GGCGAAGGATCATCTAGTTT+TGG | 0.320995 | 1_2:-45353280 | Msa0072430:CDS |
| TTGAAGGGTTTCAATCTATT+GGG | 0.328172 | 1_2:-45353189 | Msa0072430:CDS |
| TCAGGAATAACTTCTTCATT+TGG | 0.329440 | 1_2:+45353217 | None:intergenic |
| AAAATCTTGATTCATAAGTT+TGG | 0.330581 | 1_2:-45352907 | Msa0072430:three_prime_UTR |
| ATGGTGTTAGCTTTGTTGTT+TGG | 0.339618 | 1_2:-45354948 | Msa0072430:CDS |
| ACAAACTTTCTTCTAACTCT+TGG | 0.347851 | 1_2:+45353571 | None:intergenic |
| TACAATACAGTTAGCTGTAT+TGG | 0.359866 | 1_2:+45354279 | None:intergenic |
| AGTGAGGTACCAACCAAATT+GGG | 0.367055 | 1_2:-45353503 | Msa0072430:CDS |
| TCTCTAATAGCAGGGAAATC+TGG | 0.369457 | 1_2:-45353829 | Msa0072430:intron |
| ACAGCACCAACATTGAAGTT+AGG | 0.369889 | 1_2:+45353130 | None:intergenic |
| ATTAAGCTGACGAACAAAAC+TGG | 0.370082 | 1_2:+45354867 | None:intergenic |
| TTTGAAAGAAATGGTGGAAC+TGG | 0.396168 | 1_2:+45355027 | None:intergenic |
| AAAGATGAAGAAGAAAATTT+GGG | 0.405694 | 1_2:+45355129 | None:intergenic |
| GAGACTCCTACTGCTGGAAT+TGG | 0.414069 | 1_2:-45354471 | Msa0072430:CDS |
| AGGTTGAGATTGAAAGATTG+AGG | 0.415211 | 1_2:-45353801 | Msa0072430:CDS |
| ATGTCAGATATGTGGGATAT+TGG | 0.416242 | 1_2:-45353025 | Msa0072430:CDS |
| TGAGATTGAAAGATTGAGGA+AGG | 0.438960 | 1_2:-45353797 | Msa0072430:CDS |
| TGCTCAAAGGCAACAATTGT+AGG | 0.443415 | 1_2:+45352780 | None:intergenic |
| GTTGGATCTTCTTCTGATGC+AGG | 0.443789 | 1_2:-45354015 | Msa0072430:intron |
| AATTATGGAGTACCTGACTT+TGG | 0.444329 | 1_2:-45353067 | Msa0072430:CDS |
| AAGATGAAAATCCCTTGAAA+AGG | 0.445857 | 1_2:+45354423 | None:intergenic |
| TTACATTCAATCAATTCATC+GGG | 0.450505 | 1_2:-45352616 | Msa0072430:three_prime_UTR |
| TGAAACCCTTCAAAATTCTC+AGG | 0.455295 | 1_2:+45353199 | None:intergenic |
| GCAAGATTGACACCGACAAA+TGG | 0.456806 | 1_2:-45354134 | Msa0072430:CDS |
| TCGTCAGCTTAATACTTATG+TGG | 0.457473 | 1_2:-45354857 | Msa0072430:CDS |
| GAAGAAGAAAATGTCAAAGA+TGG | 0.457561 | 1_2:-45353532 | Msa0072430:CDS |
| ATTACATTCAATCAATTCAT+CGG | 0.461570 | 1_2:-45352617 | Msa0072430:three_prime_UTR |
| TAGTGATGTTCCTGTGCCTA+TGG | 0.466887 | 1_2:-45355067 | Msa0072430:CDS |
| TTTGAGCAATTATAGTTCCT+AGG | 0.467123 | 1_2:-45352765 | Msa0072430:three_prime_UTR |
| CTTTGAATCCGATCATATCA+TGG | 0.467206 | 1_2:-45354978 | Msa0072430:CDS |
| TGTAACTTCTGCCAAAATCA+TGG | 0.468787 | 1_2:+45352866 | None:intergenic |
| GAATATGAAGCATCAGCTAT+AGG | 0.469331 | 1_2:-45355102 | Msa0072430:CDS |
| TGACTATCTATTTCATCAAA+AGG | 0.470522 | 1_2:+45352959 | None:intergenic |
| TATCAAGCAAGAAGATATAT+GGG | 0.482434 | 1_2:-45353155 | Msa0072430:CDS |
| CAGCAAGTTGGTAACTATGT+TGG | 0.484482 | 1_2:-45354033 | Msa0072430:CDS |
| CAGCACCAACATTGAAGTTA+GGG | 0.486019 | 1_2:+45353131 | None:intergenic |
| AGATGAAAATCCCTTGAAAA+GGG | 0.492699 | 1_2:+45354424 | None:intergenic |
| CAAGATTGACACCGACAAAT+GGG | 0.503413 | 1_2:-45354133 | Msa0072430:CDS |
| GAAACTAATATTATTGGCGA+AGG | 0.504296 | 1_2:-45353295 | Msa0072430:CDS |
| TCAGCTATAGGTGGTGGTAC+TGG | 0.505325 | 1_2:-45355090 | Msa0072430:CDS |
| TTGAGCAATTATAGTTCCTA+GGG | 0.505834 | 1_2:-45352764 | Msa0072430:three_prime_UTR |
| AGCGCGACTTAAGCAGAAGA+AGG | 0.506475 | 1_2:-45353614 | Msa0072430:CDS |
| CTACCTAAAGAAATGACTAA+AGG | 0.514970 | 1_2:-45353400 | Msa0072430:CDS |
| TCAAAAGGAGATTCATCAGC+TGG | 0.517066 | 1_2:+45352974 | None:intergenic |
| TTGAAAGATTGAGGAAGGAG+AGG | 0.521106 | 1_2:-45353792 | Msa0072430:CDS |
| GATATGATCGGATTCAAAGA+AGG | 0.522372 | 1_2:+45354982 | None:intergenic |
| CGTCAGCTTAATACTTATGT+GGG | 0.527984 | 1_2:-45354856 | Msa0072430:intron |
| CATTCAGAGACTCCTACTGC+TGG | 0.530276 | 1_2:-45354477 | Msa0072430:CDS |
| AGATCAAGTGAAAGATAGTG+AGG | 0.532262 | 1_2:+45353421 | None:intergenic |
| TTGAAAGAAATGGTGGAACT+GGG | 0.536323 | 1_2:+45355028 | None:intergenic |
| AACAACAAAGCTAACACCAT+TGG | 0.540487 | 1_2:+45354951 | None:intergenic |
| GTCCGGATTTGAAAACAACT+TGG | 0.541092 | 1_2:+45353642 | None:intergenic |
| TGAACAAAGACAGAAACAAA+TGG | 0.541684 | 1_2:-45353677 | Msa0072430:CDS |
| ACTGCTGGAATTGGCAACAT+AGG | 0.543095 | 1_2:-45354462 | Msa0072430:CDS |
| CTTGTAACAACTCCAAAGTC+AGG | 0.546441 | 1_2:+45353055 | None:intergenic |
| CGAATGACGGCTAGTCACGC+AGG | 0.554003 | 1_2:-45353727 | Msa0072430:CDS |
| CATTCAATCAATTCATCGGG+TGG | 0.556882 | 1_2:-45352613 | Msa0072430:three_prime_UTR |
| ATTTGTCGGTGTCAATCTTG+CGG | 0.568858 | 1_2:+45354136 | None:intergenic |
| GATGAATATGCTGCAATGCA+TGG | 0.570282 | 1_2:-45353337 | Msa0072430:CDS |
| TGGGACCCTAACTTCAATGT+TGG | 0.572995 | 1_2:-45353136 | Msa0072430:CDS |
| TCGGAGTTTCAATAAAATCA+CGG | 0.575050 | 1_2:-45352841 | Msa0072430:three_prime_UTR |
| ATAACTCTTGCAAACTCCAA+AGG | 0.576307 | 1_2:+45354922 | None:intergenic |
| GTGGTGACATGTCAGATATG+TGG | 0.577350 | 1_2:-45353033 | Msa0072430:CDS |
| TTTAAGTAATTTAGTATCAG+CGG | 0.578690 | 1_2:-45352583 | Msa0072430:three_prime_UTR |
| GAAGCATCAGCTATAGGTGG+TGG | 0.582607 | 1_2:-45355096 | Msa0072430:CDS |
| ATCATATCATGGAGTTCCAA+TGG | 0.583067 | 1_2:-45354967 | Msa0072430:CDS |
| TTGGAACTCCATGATATGAT+CGG | 0.584421 | 1_2:+45354970 | None:intergenic |
| TCAGGTACTCCATAATTCAA+AGG | 0.586697 | 1_2:+45353073 | None:intergenic |
| ACTTGTTGAAAAGCATTCAA+AGG | 0.586884 | 1_2:-45354074 | Msa0072430:CDS |
| TCTGCCAAAATCATGGAAGC+CGG | 0.586953 | 1_2:+45352873 | None:intergenic |
| CTCATCTGCAAACACTCCAT+AGG | 0.589952 | 1_2:+45355051 | None:intergenic |
| GTGAGGTACCAACCAAATTG+GGG | 0.592193 | 1_2:-45353502 | Msa0072430:CDS |
| ATATGATCGGATTCAAAGAA+GGG | 0.594477 | 1_2:+45354983 | None:intergenic |
| ATGTTGCCAATTCCAGCAGT+AGG | 0.594776 | 1_2:+45354465 | None:intergenic |
| TTGTTGTGTTTGAAGTGTCT+AGG | 0.595204 | 1_2:+45354895 | None:intergenic |
| AAGTTTGGCAGAATCACGAC+CGG | 0.596934 | 1_2:-45352892 | Msa0072430:three_prime_UTR |
| TGCAAACACTCCATAGGCAC+AGG | 0.597520 | 1_2:+45355057 | None:intergenic |
| ACGCAGGTAATGTGAATCAA+AGG | 0.601321 | 1_2:-45353711 | Msa0072430:CDS |
| TAGGAACTATAATTGCTCAA+AGG | 0.601783 | 1_2:+45352767 | None:intergenic |
| TTTGATGAAATAGATAGTCA+AGG | 0.610338 | 1_2:-45352956 | Msa0072430:CDS |
| TATTCAATAATATGTCCCCT+AGG | 0.611423 | 1_2:+45352748 | None:intergenic |
| TGGTGACATGTCAGATATGT+GGG | 0.612349 | 1_2:-45353032 | Msa0072430:CDS |
| CAAACTGTGGGAATGAGATG+TGG | 0.613012 | 1_2:-45353099 | Msa0072430:CDS |
| ACGTCTCAATCTCAGCAAGT+TGG | 0.616416 | 1_2:-45354045 | Msa0072430:CDS |
| ACAGCAGCAACAACGAATGA+CGG | 0.617265 | 1_2:-45353740 | Msa0072430:CDS |
| AGCAGGGAAATCTGGAGTCG+AGG | 0.619956 | 1_2:-45353821 | Msa0072430:intron |
| GACTTTGGAGTTGTTACAAG+TGG | 0.625352 | 1_2:-45353052 | Msa0072430:CDS |
| TCAAAGATGGAAAGATAGTG+AGG | 0.635058 | 1_2:-45353519 | Msa0072430:CDS |
| CTGTTGCTACTTCAAACTGT+GGG | 0.638412 | 1_2:-45353111 | Msa0072430:CDS |
| GATGAAATAGATAGTCAAGG+TGG | 0.640962 | 1_2:-45352953 | Msa0072430:CDS |
| GACTGTGTTAATGCAAGAAG+TGG | 0.653059 | 1_2:-45353770 | Msa0072430:CDS |
| AAACTGTGGGAATGAGATGT+GGG | 0.653938 | 1_2:-45353098 | Msa0072430:CDS |
| GCTGTTGCTACTTCAAACTG+TGG | 0.663813 | 1_2:-45353112 | Msa0072430:CDS |
| TATGAAGCATCAGCTATAGG+TGG | 0.681407 | 1_2:-45355099 | Msa0072430:CDS |
| CTTGCTGAGATTGAGACGTG+CGG | 0.690178 | 1_2:+45354049 | None:intergenic |
| TGAGCAATTATAGTTCCTAG+GGG | 0.691150 | 1_2:-45352763 | Msa0072430:three_prime_UTR |
| TGAGGTACCAACCAAATTGG+GGG | 0.710225 | 1_2:-45353501 | Msa0072430:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTACATTACATAGATTAATA+GGG | + | chr1_2:45352946-45352965 | None:intergenic | 15.0% |
| !! | AATTCAGAAACTAATATTAT+TGG | - | chr1_2:45354424-45354443 | Msa0072430:CDS | 15.0% |
| !! | AAAGATGAAGAAGAAAATTT+GGG | + | chr1_2:45352599-45352618 | None:intergenic | 20.0% |
| !!! | TCAAATGTTTTTGAAAGAAA+TGG | + | chr1_2:45352710-45352729 | None:intergenic | 20.0% |
| !! | TCTTTCAAAAACATTTGATT+TGG | - | chr1_2:45352712-45352731 | Msa0072430:three_prime_UTR | 20.0% |
| !! | TACATTACATAGATTAATAG+GGG | + | chr1_2:45352945-45352964 | None:intergenic | 20.0% |
| !! | GTTACATTACATAGATTAAT+AGG | + | chr1_2:45352947-45352966 | None:intergenic | 20.0% |
| !! | AACAATTTGATGTATCAATT+GGG | - | chr1_2:45353053-45353072 | Msa0072430:CDS | 20.0% |
| !! | TTATTCATTCTCAGATAATT+TGG | - | chr1_2:45353548-45353567 | Msa0072430:CDS | 20.0% |
| !!! | AACATTTTTTCCTTTGAAAA+GGG | + | chr1_2:45354482-45354501 | None:intergenic | 20.0% |
| !!! | TAACATTTTTTCCTTTGAAA+AGG | + | chr1_2:45354483-45354502 | None:intergenic | 20.0% |
| !!! | TTATGAATCAAGATTTTCTT+AGG | + | chr1_2:45354815-45354834 | None:intergenic | 20.0% |
| !! | AAAATCTTGATTCATAAGTT+TGG | - | chr1_2:45354818-45354837 | Msa0072430:intron | 20.0% |
| !! | ATTACATTCAATCAATTCAT+CGG | - | chr1_2:45355108-45355127 | Msa0072430:CDS | 20.0% |
| !! | TTTAAGTAATTTAGTATCAG+CGG | - | chr1_2:45355142-45355161 | Msa0072430:CDS | 20.0% |
| ! | CAAAGATGAAGAAGAAAATT+TGG | + | chr1_2:45352600-45352619 | None:intergenic | 25.0% |
| !! | ATTTTCTTCTTCATCTTTGA+TGG | - | chr1_2:45352601-45352620 | Msa0072430:three_prime_UTR | 25.0% |
| !!! | AATGTTTTTGAAAGAAATGG+TGG | + | chr1_2:45352707-45352726 | None:intergenic | 25.0% |
| ! | TTCAATCAACAAACACAAAA+GGG | + | chr1_2:45353035-45353054 | None:intergenic | 25.0% |
| ! | GAACAATTTGATGTATCAAT+TGG | - | chr1_2:45353052-45353071 | Msa0072430:CDS | 25.0% |
| !!! | TAAGCTTGTCTTTTTTGTTT+TGG | - | chr1_2:45353406-45353425 | Msa0072430:CDS | 25.0% |
| ! | AGAATGAATAAACCAAACAT+AGG | + | chr1_2:45353539-45353558 | None:intergenic | 25.0% |
| !! | TCACATCAAACCTTTTATAT+AGG | - | chr1_2:45353783-45353802 | Msa0072430:CDS | 25.0% |
| !!! | AGTTTGTTAGCCTATATAAA+AGG | + | chr1_2:45353796-45353815 | None:intergenic | 25.0% |
| !! | TGACATTTTCTTCTTCATTT+TGG | + | chr1_2:45354189-45354208 | None:intergenic | 25.0% |
| !!! | ACATTTTTTCCTTTGAAAAG+GGG | + | chr1_2:45354481-45354500 | None:intergenic | 25.0% |
| !! | TTATTCCTGAGAATTTTGAA+GGG | - | chr1_2:45354521-45354540 | Msa0072430:intron | 25.0% |
| ! | TTATCAAGCAAGAAGATATA+TGG | - | chr1_2:45354569-45354588 | Msa0072430:intron | 25.0% |
| ! | TATCAAGCAAGAAGATATAT+GGG | - | chr1_2:45354570-45354589 | Msa0072430:intron | 25.0% |
| ! | TGACTATCTATTTCATCAAA+AGG | + | chr1_2:45354769-45354788 | None:intergenic | 25.0% |
| ! | TTTGATGAAATAGATAGTCA+AGG | - | chr1_2:45354769-45354788 | Msa0072430:intron | 25.0% |
| ! | AAAGAGAGTAACAAAAATTG+TGG | + | chr1_2:45355055-45355074 | None:intergenic | 25.0% |
| ! | TTACATTCAATCAATTCATC+GGG | - | chr1_2:45355109-45355128 | Msa0072430:CDS | 25.0% |
| !!! | GGAGAGTTTTTTTCATCATT+TGG | + | chr1_2:45352578-45352597 | None:intergenic | 30.0% |
| ATATGATCGGATTCAAAGAA+GGG | + | chr1_2:45352745-45352764 | None:intergenic | 30.0% | |
| TCAATCAACAAACACAAAAG+GGG | + | chr1_2:45353034-45353053 | None:intergenic | 30.0% | |
| GTTCAATCAACAAACACAAA+AGG | + | chr1_2:45353036-45353055 | None:intergenic | 30.0% | |
| !! | TGTGTTTTTGTTACTACTAG+TGG | - | chr1_2:45353147-45353166 | Msa0072430:CDS | 30.0% |
| AGATGAAAATCCCTTGAAAA+GGG | + | chr1_2:45353304-45353323 | None:intergenic | 30.0% | |
| AAGATGAAAATCCCTTGAAA+AGG | + | chr1_2:45353305-45353324 | None:intergenic | 30.0% | |
| TACAATACAGTTAGCTGTAT+TGG | + | chr1_2:45353449-45353468 | None:intergenic | 30.0% | |
| ATTGAAAAACTCCCATTTGT+CGG | + | chr1_2:45353606-45353625 | None:intergenic | 30.0% | |
| !! | AAATGGGAGTTTTTCAATGA+AGG | - | chr1_2:45353608-45353627 | Msa0072430:CDS | 30.0% |
| ! | TTCAATGAAGGTTTTCAGAA+AGG | - | chr1_2:45353620-45353639 | Msa0072430:CDS | 30.0% |
| !! | ACTTGTTGAAAAGCATTCAA+AGG | - | chr1_2:45353651-45353670 | Msa0072430:CDS | 30.0% |
| TAACTGTATCTCTAATAGCA+GGG | - | chr1_2:45353888-45353907 | Msa0072430:intron | 30.0% | |
| TGAACAAAGACAGAAACAAA+TGG | - | chr1_2:45354048-45354067 | Msa0072430:CDS | 30.0% | |
| GAAACAAATGGTATCTTTCT+TGG | - | chr1_2:45354060-45354079 | Msa0072430:CDS | 30.0% | |
| ACAAACTTTCTTCTAACTCT+TGG | + | chr1_2:45354157-45354176 | None:intergenic | 30.0% | |
| GAAGAAGAAAATGTCAAAGA+TGG | - | chr1_2:45354193-45354212 | Msa0072430:intron | 30.0% | |
| CTACCTAAAGAAATGACTAA+AGG | - | chr1_2:45354325-45354344 | Msa0072430:intron | 30.0% | |
| TCACCTTTAGTCATTTCTTT+AGG | + | chr1_2:45354331-45354350 | None:intergenic | 30.0% | |
| GAAACTAATATTATTGGCGA+AGG | - | chr1_2:45354430-45354449 | Msa0072430:CDS | 30.0% | |
| TCAGGAATAACTTCTTCATT+TGG | + | chr1_2:45354511-45354530 | None:intergenic | 30.0% | |
| ! | GTTATTCCTGAGAATTTTGA+AGG | - | chr1_2:45354520-45354539 | Msa0072430:intron | 30.0% |
| TTTGAAGGGTTTCAATCTAT+TGG | - | chr1_2:45354535-45354554 | Msa0072430:intron | 30.0% | |
| TTGAAGGGTTTCAATCTATT+GGG | - | chr1_2:45354536-45354555 | Msa0072430:intron | 30.0% | |
| !!! | GATATTGGTTTTGGAAGTTT+GGG | - | chr1_2:45354715-45354734 | Msa0072430:intron | 30.0% |
| !! | GAAGTTTGGGTATTGATAAT+TGG | - | chr1_2:45354728-45354747 | Msa0072430:intron | 30.0% |
| ! | GAATCAAGATTTTCTTAGGT+AGG | + | chr1_2:45354811-45354830 | None:intergenic | 30.0% |
| ! | TTTTGGCAGAAGTTACATTT+CGG | - | chr1_2:45354865-45354884 | Msa0072430:CDS | 30.0% |
| TCGGAGTTTCAATAAAATCA+CGG | - | chr1_2:45354884-45354903 | Msa0072430:CDS | 30.0% | |
| TAGGAACTATAATTGCTCAA+AGG | + | chr1_2:45354961-45354980 | None:intergenic | 30.0% | |
| TTTGAGCAATTATAGTTCCT+AGG | - | chr1_2:45354960-45354979 | Msa0072430:CDS | 30.0% | |
| TTGAGCAATTATAGTTCCTA+GGG | - | chr1_2:45354961-45354980 | Msa0072430:CDS | 30.0% | |
| TATTCAATAATATGTCCCCT+AGG | + | chr1_2:45354980-45354999 | None:intergenic | 30.0% | |
| ! | GAATATGAAGCATCAGCTAT+AGG | - | chr1_2:45352623-45352642 | Msa0072430:three_prime_UTR | 35.0% |
| ! | TTGAAAGAAATGGTGGAACT+GGG | + | chr1_2:45352700-45352719 | None:intergenic | 35.0% |
| ! | TTTGAAAGAAATGGTGGAAC+TGG | + | chr1_2:45352701-45352720 | None:intergenic | 35.0% |
| GATATGATCGGATTCAAAGA+AGG | + | chr1_2:45352746-45352765 | None:intergenic | 35.0% | |
| CTTTGAATCCGATCATATCA+TGG | - | chr1_2:45352747-45352766 | Msa0072430:three_prime_UTR | 35.0% | |
| TTGGAACTCCATGATATGAT+CGG | + | chr1_2:45352758-45352777 | None:intergenic | 35.0% | |
| ATCATATCATGGAGTTCCAA+TGG | - | chr1_2:45352758-45352777 | Msa0072430:three_prime_UTR | 35.0% | |
| AACAACAAAGCTAACACCAT+TGG | + | chr1_2:45352777-45352796 | None:intergenic | 35.0% | |
| !! | ATGGTGTTAGCTTTGTTGTT+TGG | - | chr1_2:45352777-45352796 | Msa0072430:three_prime_UTR | 35.0% |
| !! | TGGTGTTAGCTTTGTTGTTT+GGG | - | chr1_2:45352778-45352797 | Msa0072430:three_prime_UTR | 35.0% |
| ATAACTCTTGCAAACTCCAA+AGG | + | chr1_2:45352806-45352825 | None:intergenic | 35.0% | |
| ! | TTGTTGTGTTTGAAGTGTCT+AGG | + | chr1_2:45352833-45352852 | None:intergenic | 35.0% |
| ATTAAGCTGACGAACAAAAC+TGG | + | chr1_2:45352861-45352880 | None:intergenic | 35.0% | |
| TCGTCAGCTTAATACTTATG+TGG | - | chr1_2:45352868-45352887 | Msa0072430:three_prime_UTR | 35.0% | |
| CGTCAGCTTAATACTTATGT+GGG | - | chr1_2:45352869-45352888 | Msa0072430:three_prime_UTR | 35.0% | |
| ! | ACTTTTCACAATGCCTCTAA+TGG | - | chr1_2:45352919-45352938 | Msa0072430:exon | 35.0% |
| CAATCAACAAACACAAAAGG+GGG | + | chr1_2:45353033-45353052 | None:intergenic | 35.0% | |
| ACTACACAATGCAATCAATC+AGG | + | chr1_2:45353223-45353242 | None:intergenic | 35.0% | |
| TTTCTTGAGTCTCCTATGTT+TGG | - | chr1_2:45353524-45353543 | Msa0072430:CDS | 35.0% | |
| !! | ATAATTTGGTGTTTGAGCAC+AGG | - | chr1_2:45353562-45353581 | Msa0072430:CDS | 35.0% |
| !! | TAATTTGGTGTTTGAGCACA+GGG | - | chr1_2:45353563-45353582 | Msa0072430:CDS | 35.0% |
| CTAACTGTATCTCTAATAGC+AGG | - | chr1_2:45353887-45353906 | Msa0072430:intron | 35.0% | |
| AGGTTGAGATTGAAAGATTG+AGG | - | chr1_2:45353924-45353943 | Msa0072430:intron | 35.0% | |
| TGAGATTGAAAGATTGAGGA+AGG | - | chr1_2:45353928-45353947 | Msa0072430:intron | 35.0% | |
| TCAAAGATGGAAAGATAGTG+AGG | - | chr1_2:45354206-45354225 | Msa0072430:intron | 35.0% | |
| ATGTCTATATTCCCCCAATT+TGG | + | chr1_2:45354238-45354257 | None:intergenic | 35.0% | |
| ! | ATAGTGAGGAGAGTTTTCAA+TGG | + | chr1_2:45354293-45354312 | None:intergenic | 35.0% |
| AGATCAAGTGAAAGATAGTG+AGG | + | chr1_2:45354307-45354326 | None:intergenic | 35.0% | |
| TGAAACCCTTCAAAATTCTC+AGG | + | chr1_2:45354529-45354548 | None:intergenic | 35.0% | |
| ATGTGGGATCCTTTGAATTA+TGG | - | chr1_2:45354643-45354662 | Msa0072430:intron | 35.0% | |
| TCAGGTACTCCATAATTCAA+AGG | + | chr1_2:45354655-45354674 | None:intergenic | 35.0% | |
| ! | AATTATGGAGTACCTGACTT+TGG | - | chr1_2:45354658-45354677 | Msa0072430:intron | 35.0% |
| ATGTCAGATATGTGGGATAT+TGG | - | chr1_2:45354700-45354719 | Msa0072430:intron | 35.0% | |
| !!! | GATATGTGGGATATTGGTTT+TGG | - | chr1_2:45354706-45354725 | Msa0072430:intron | 35.0% |
| !!! | GGATATTGGTTTTGGAAGTT+TGG | - | chr1_2:45354714-45354733 | Msa0072430:intron | 35.0% |
| GATGAAATAGATAGTCAAGG+TGG | - | chr1_2:45354772-45354791 | Msa0072430:intron | 35.0% | |
| TGTAACTTCTGCCAAAATCA+TGG | + | chr1_2:45354862-45354881 | None:intergenic | 35.0% | |
| TGAGCAATTATAGTTCCTAG+GGG | - | chr1_2:45354962-45354981 | Msa0072430:CDS | 35.0% | |
| ! | TATGAAGCATCAGCTATAGG+TGG | - | chr1_2:45352626-45352645 | Msa0072430:three_prime_UTR | 40.0% |
| !! | CTTTGTTGTTTGGGATCCTT+TGG | - | chr1_2:45352787-45352806 | Msa0072430:three_prime_UTR | 40.0% |
| AGATTAATAGGGGCCATTAG+AGG | + | chr1_2:45352935-45352954 | None:intergenic | 40.0% | |
| ACACAATGCAATCAATCAGG+AGG | + | chr1_2:45353220-45353239 | None:intergenic | 40.0% | |
| ! | AATGTTGCTCTCCCTTTTCA+AGG | - | chr1_2:45353290-45353309 | Msa0072430:CDS | 40.0% |
| ! | ATGTTGCTCTCCCTTTTCAA+GGG | - | chr1_2:45353291-45353310 | Msa0072430:CDS | 40.0% |
| ! | CAAGGGATTTTCATCTTCCA+AGG | - | chr1_2:45353308-45353327 | Msa0072430:CDS | 40.0% |
| ! | GGATTTTCATCTTCCAAGGT+AGG | - | chr1_2:45353312-45353331 | Msa0072430:CDS | 40.0% |
| TGAAACACAGAATCCTACCT+TGG | + | chr1_2:45353328-45353347 | None:intergenic | 40.0% | |
| !! | ATTTGTCGGTGTCAATCTTG+CGG | + | chr1_2:45353592-45353611 | None:intergenic | 40.0% |
| CAAGATTGACACCGACAAAT+GGG | - | chr1_2:45353592-45353611 | Msa0072430:CDS | 40.0% | |
| !! | CAGCAAGTTGGTAACTATGT+TGG | - | chr1_2:45353692-45353711 | Msa0072430:CDS | 40.0% |
| TCTCTAATAGCAGGGAAATC+TGG | - | chr1_2:45353896-45353915 | Msa0072430:intron | 40.0% | |
| TTGAAAGATTGAGGAAGGAG+AGG | - | chr1_2:45353933-45353952 | Msa0072430:intron | 40.0% | |
| GACTGTGTTAATGCAAGAAG+TGG | - | chr1_2:45353955-45353974 | Msa0072430:intron | 40.0% | |
| ACGCAGGTAATGTGAATCAA+AGG | - | chr1_2:45354014-45354033 | Msa0072430:intron | 40.0% | |
| !! | GGCCAAGTTGTTTTCAAATC+CGG | - | chr1_2:45354081-45354100 | Msa0072430:CDS | 40.0% |
| GTCCGGATTTGAAAACAACT+TGG | + | chr1_2:45354086-45354105 | None:intergenic | 40.0% | |
| TTAAGTCGCGCTAAAAAGTC+CGG | + | chr1_2:45354103-45354122 | None:intergenic | 40.0% | |
| ! | TAGTGAGGTACCAACCAAAT+TGG | - | chr1_2:45354221-45354240 | Msa0072430:intron | 40.0% |
| ! | AGTGAGGTACCAACCAAATT+GGG | - | chr1_2:45354222-45354241 | Msa0072430:intron | 40.0% |
| CTATATTCCCCCAATTTGGT+TGG | + | chr1_2:45354234-45354253 | None:intergenic | 40.0% | |
| ! | GGAGAGTTTTCAATGGAAAC+TGG | + | chr1_2:45354286-45354305 | None:intergenic | 40.0% |
| GATGAATATGCTGCAATGCA+TGG | - | chr1_2:45354388-45354407 | Msa0072430:intron | 40.0% | |
| ! | CTTGATGAACCCCTTTTCAA+AGG | - | chr1_2:45354469-45354488 | Msa0072430:CDS | 40.0% |
| CAGCACCAACATTGAAGTTA+GGG | + | chr1_2:45354597-45354616 | None:intergenic | 40.0% | |
| ACAGCACCAACATTGAAGTT+AGG | + | chr1_2:45354598-45354617 | None:intergenic | 40.0% | |
| ! | CTGTTGCTACTTCAAACTGT+GGG | - | chr1_2:45354614-45354633 | Msa0072430:intron | 40.0% |
| AAACTGTGGGAATGAGATGT+GGG | - | chr1_2:45354627-45354646 | Msa0072430:intron | 40.0% | |
| CTTGTAACAACTCCAAAGTC+AGG | + | chr1_2:45354673-45354692 | None:intergenic | 40.0% | |
| !! | GACTTTGGAGTTGTTACAAG+TGG | - | chr1_2:45354673-45354692 | Msa0072430:intron | 40.0% |
| TGGTGACATGTCAGATATGT+GGG | - | chr1_2:45354693-45354712 | Msa0072430:intron | 40.0% | |
| TCAAAAGGAGATTCATCAGC+TGG | + | chr1_2:45354754-45354773 | None:intergenic | 40.0% | |
| TGCTCAAAGGCAACAATTGT+AGG | + | chr1_2:45354948-45354967 | None:intergenic | 40.0% | |
| CATTCAATCAATTCATCGGG+TGG | - | chr1_2:45355112-45355131 | Msa0072430:CDS | 40.0% | |
| TAGTGATGTTCCTGTGCCTA+TGG | - | chr1_2:45352658-45352677 | Msa0072430:three_prime_UTR | 45.0% | |
| CTCATCTGCAAACACTCCAT+AGG | + | chr1_2:45352677-45352696 | None:intergenic | 45.0% | |
| ACAAACACAAAAGGGGGAGA+GGG | + | chr1_2:45353027-45353046 | None:intergenic | 45.0% | |
| AACAAACACAAAAGGGGGAG+AGG | + | chr1_2:45353028-45353047 | None:intergenic | 45.0% | |
| ATGTTGCCAATTCCAGCAGT+AGG | + | chr1_2:45353263-45353282 | None:intergenic | 45.0% | |
| ACTGCTGGAATTGGCAACAT+AGG | - | chr1_2:45353263-45353282 | Msa0072430:CDS | 45.0% | |
| GCAAGATTGACACCGACAAA+TGG | - | chr1_2:45353591-45353610 | Msa0072430:CDS | 45.0% | |
| ACGTCTCAATCTCAGCAAGT+TGG | - | chr1_2:45353680-45353699 | Msa0072430:CDS | 45.0% | |
| GTTGGATCTTCTTCTGATGC+AGG | - | chr1_2:45353710-45353729 | Msa0072430:CDS | 45.0% | |
| ACAGCAGCAACAACGAATGA+CGG | - | chr1_2:45353985-45354004 | Msa0072430:intron | 45.0% | |
| ! | GTGAGGTACCAACCAAATTG+GGG | - | chr1_2:45354223-45354242 | Msa0072430:intron | 45.0% |
| ! | TGAGGTACCAACCAAATTGG+GGG | - | chr1_2:45354224-45354243 | Msa0072430:intron | 45.0% |
| !! | GGCGAAGGATCATCTAGTTT+TGG | - | chr1_2:45354445-45354464 | Msa0072430:CDS | 45.0% |
| TGGGACCCTAACTTCAATGT+TGG | - | chr1_2:45354589-45354608 | Msa0072430:intron | 45.0% | |
| ! | GCTGTTGCTACTTCAAACTG+TGG | - | chr1_2:45354613-45354632 | Msa0072430:intron | 45.0% |
| CAAACTGTGGGAATGAGATG+TGG | - | chr1_2:45354626-45354645 | Msa0072430:intron | 45.0% | |
| GTGGTGACATGTCAGATATG+TGG | - | chr1_2:45354692-45354711 | Msa0072430:intron | 45.0% | |
| AAGTTTGGCAGAATCACGAC+CGG | - | chr1_2:45354833-45354852 | Msa0072430:intron | 45.0% | |
| TCTGCCAAAATCATGGAAGC+CGG | + | chr1_2:45354855-45354874 | None:intergenic | 45.0% | |
| !!! | CTATTATTTTTTTTTTTTTT+TGG | - | chr1_2:45352970-45352989 | Msa0072430:CDS | 5.0% |
| ! | GAAGCATCAGCTATAGGTGG+TGG | - | chr1_2:45352629-45352648 | Msa0072430:three_prime_UTR | 50.0% |
| ! | TCAGCTATAGGTGGTGGTAC+TGG | - | chr1_2:45352635-45352654 | Msa0072430:three_prime_UTR | 50.0% |
| TGCAAACACTCCATAGGCAC+AGG | + | chr1_2:45352671-45352690 | None:intergenic | 50.0% | |
| CATTCAGAGACTCCTACTGC+TGG | - | chr1_2:45353248-45353267 | Msa0072430:CDS | 50.0% | |
| GAGACTCCTACTGCTGGAAT+TGG | - | chr1_2:45353254-45353273 | Msa0072430:CDS | 50.0% | |
| CTTGCTGAGATTGAGACGTG+CGG | + | chr1_2:45353679-45353698 | None:intergenic | 50.0% | |
| AGCGCGACTTAAGCAGAAGA+AGG | - | chr1_2:45354111-45354130 | Msa0072430:CDS | 50.0% | |
| !! | ACGACCGGCTTCCATGATTT+TGG | - | chr1_2:45354848-45354867 | Msa0072430:intron | 50.0% |
| ! | AGCAGGGAAATCTGGAGTCG+AGG | - | chr1_2:45353904-45353923 | Msa0072430:intron | 55.0% |
| ! | CGAATGACGGCTAGTCACGC+AGG | - | chr1_2:45353998-45354017 | Msa0072430:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 45352569 | 45355178 | 45352569 | ID=Msa0072430;Name=Msa0072430 |
| chr1_2 | mRNA | 45352569 | 45355178 | 45352569 | ID=Msa0072430-mRNA-1;Parent=Msa0072430;Name=Msa0072430-mRNA-1;_AED=0.05;_eAED=0.07;_QI=0|0.25|0.4|1|1|1|5|362|500 |
| chr1_2 | exon | 45352569 | 45353838 | 45352569 | ID=Msa0072430-mRNA-1:exon:13649;Parent=Msa0072430-mRNA-1 |
| chr1_2 | exon | 45354016 | 45354163 | 45354016 | ID=Msa0072430-mRNA-1:exon:13648;Parent=Msa0072430-mRNA-1 |
| chr1_2 | exon | 45354275 | 45354311 | 45354275 | ID=Msa0072430-mRNA-1:exon:13647;Parent=Msa0072430-mRNA-1 |
| chr1_2 | exon | 45354418 | 45354505 | 45354418 | ID=Msa0072430-mRNA-1:exon:13646;Parent=Msa0072430-mRNA-1 |
| chr1_2 | exon | 45354857 | 45355178 | 45354857 | ID=Msa0072430-mRNA-1:exon:13645;Parent=Msa0072430-mRNA-1 |
| chr1_2 | CDS | 45354857 | 45355178 | 45354857 | ID=Msa0072430-mRNA-1:cds;Parent=Msa0072430-mRNA-1 |
| chr1_2 | CDS | 45354418 | 45354505 | 45354418 | ID=Msa0072430-mRNA-1:cds;Parent=Msa0072430-mRNA-1 |
| chr1_2 | CDS | 45354275 | 45354311 | 45354275 | ID=Msa0072430-mRNA-1:cds;Parent=Msa0072430-mRNA-1 |
| chr1_2 | CDS | 45354016 | 45354163 | 45354016 | ID=Msa0072430-mRNA-1:cds;Parent=Msa0072430-mRNA-1 |
| chr1_2 | CDS | 45352931 | 45353838 | 45352931 | ID=Msa0072430-mRNA-1:cds;Parent=Msa0072430-mRNA-1 |
| chr1_2 | three_prime_UTR | 45352569 | 45352930 | 45352569 | ID=Msa0072430-mRNA-1:three_prime_utr;Parent=Msa0072430-mRNA-1 |
| Gene Sequence |
| Protein sequence |
