Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0024940 | sp|Q8GYY1|HSFA3_ARATH | 50.167 | 299 | 102 | 3 | 27 | 321 | 35 | 290 | 1.07e-88 | 280 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|---|---|
| Msa0024940 | TF | HSF |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0024940 | Msa0072430 | 0.958663 | 1.347210e-116 | -8.615850e-47 |
| Msa0024940 | Msa0120870 | 0.984346 | 2.703838e-160 | -8.615850e-47 |
| Msa0024940 | Msa0343510 | 0.906926 | 8.795737e-81 | -8.615850e-47 |
| Msa0024940 | Msa0376700 | 0.840609 | 7.841908e-58 | -8.615850e-47 |
| Msa0024940 | Msa0425830 | 0.861392 | 1.059819e-63 | -8.615850e-47 |
| Msa0024940 | Msa0472290 | 0.857666 | 1.397004e-62 | -8.615850e-47 |
| Msa0024940 | Msa1128260 | 0.832739 | 7.960561e-56 | -8.615850e-47 |
| Msa0024940 | Msa1411850 | 0.839677 | 1.372983e-57 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0024940 | MtrunA17_Chr1g0179311 | 94.587 | 351 | 19 | 0 | 150 | 500 | 14 | 364 | 0.0 | 684 |
| Msa0024940 | MtrunA17_Chr1g0179321 | 94.444 | 108 | 4 | 1 | 1 | 106 | 1 | 108 | 1.28e-65 | 207 |
| Msa0024940 | MtrunA17_Chr5g0410881 | 41.781 | 292 | 113 | 4 | 31 | 308 | 16 | 264 | 3.07e-65 | 219 |
| Msa0024940 | MtrunA17_Chr3g0135831 | 36.591 | 399 | 181 | 11 | 33 | 426 | 32 | 363 | 3.15e-64 | 213 |
| Msa0024940 | MtrunA17_Chr1g0204741 | 41.000 | 300 | 118 | 7 | 25 | 317 | 15 | 262 | 2.03e-61 | 204 |
| Msa0024940 | MtrunA17_Chr7g0260331 | 39.677 | 310 | 136 | 5 | 13 | 315 | 16 | 281 | 5.26e-61 | 204 |
| Msa0024940 | MtrunA17_Chr4g0039891 | 36.127 | 346 | 151 | 7 | 45 | 366 | 10 | 309 | 1.98e-60 | 206 |
| Msa0024940 | MtrunA17_Chr4g0071051 | 38.077 | 260 | 113 | 2 | 17 | 276 | 71 | 282 | 4.74e-52 | 182 |
| Msa0024940 | MtrunA17_Chr1g0185131 | 41.631 | 233 | 84 | 3 | 34 | 266 | 19 | 199 | 1.91e-49 | 173 |
| Msa0024940 | MtrunA17_Chr6g0467041 | 34.286 | 245 | 111 | 4 | 45 | 287 | 20 | 216 | 2.73e-39 | 145 |
| Msa0024940 | MtrunA17_Chr8g0378061 | 30.833 | 360 | 173 | 11 | 48 | 390 | 23 | 323 | 7.72e-39 | 147 |
| Msa0024940 | MtrunA17_Chr8g0379701 | 34.978 | 223 | 100 | 2 | 43 | 263 | 8 | 187 | 1.66e-38 | 145 |
| Msa0024940 | MtrunA17_Chr8g0392001 | 33.121 | 314 | 148 | 7 | 45 | 349 | 20 | 280 | 2.66e-38 | 143 |
| Msa0024940 | MtrunA17_Chr2g0330821 | 35.345 | 232 | 105 | 2 | 47 | 278 | 79 | 265 | 3.62e-37 | 140 |
| Msa0024940 | MtrunA17_Chr6g0485571 | 32.780 | 241 | 117 | 3 | 45 | 285 | 9 | 204 | 1.24e-36 | 138 |
| Msa0024940 | MtrunA17_Chr3g0134031 | 46.853 | 143 | 33 | 1 | 47 | 189 | 24 | 123 | 2.84e-32 | 127 |
| Msa0024940 | MtrunA17_Chr2g0284481 | 29.958 | 237 | 111 | 3 | 45 | 276 | 13 | 199 | 1.93e-31 | 125 |
| Msa0024940 | MtrunA17_Chr5g0397881 | 43.262 | 141 | 37 | 1 | 41 | 181 | 18 | 115 | 3.59e-31 | 123 |
| Msa0024940 | MtrunA17_Chr7g0257331 | 35.644 | 202 | 76 | 2 | 37 | 227 | 12 | 170 | 5.02e-31 | 120 |
| Msa0024940 | MtrunA17_Chr5g0402291 | 33.065 | 248 | 108 | 5 | 41 | 273 | 3 | 207 | 1.39e-30 | 120 |
| Msa0024940 | MtrunA17_Chr5g0441531 | 34.466 | 206 | 71 | 3 | 41 | 225 | 19 | 181 | 2.80e-28 | 113 |
| Msa0024940 | MtrunA17_Chr6g0472421 | 42.222 | 135 | 35 | 1 | 47 | 181 | 33 | 124 | 1.48e-27 | 113 |
| Msa0024940 | MtrunA17_Chr1g0203601 | 32.710 | 214 | 72 | 3 | 41 | 225 | 12 | 182 | 2.68e-27 | 111 |
| Msa0024940 | MtrunA17_Chr8g0375041 | 32.710 | 214 | 82 | 4 | 44 | 239 | 6 | 175 | 1.51e-26 | 108 |
| Msa0024940 | MtrunA17_Chr4g0047421 | 32.796 | 186 | 77 | 3 | 47 | 228 | 33 | 174 | 9.78e-24 | 99.0 |
| Msa0024940 | MtrunA17_Chr4g0023771 | 53.425 | 73 | 34 | 0 | 45 | 117 | 13 | 85 | 4.51e-20 | 85.5 |
| Msa0024940 | MtrunA17_Chr2g0330841 | 35.714 | 140 | 88 | 1 | 148 | 287 | 39 | 176 | 2.34e-19 | 90.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0024940 | AT5G03720.2 | 50.167 | 299 | 102 | 3 | 27 | 321 | 35 | 290 | 1.09e-89 | 280 |
| Msa0024940 | AT5G03720.1 | 50.167 | 299 | 102 | 3 | 27 | 321 | 35 | 290 | 1.09e-89 | 280 |
| Msa0024940 | AT5G16820.1 | 35.765 | 425 | 186 | 10 | 45 | 448 | 25 | 383 | 2.36e-63 | 214 |
| Msa0024940 | AT5G16820.2 | 35.765 | 425 | 186 | 10 | 45 | 448 | 25 | 383 | 2.36e-63 | 214 |
| Msa0024940 | AT1G32330.2 | 39.032 | 310 | 123 | 5 | 22 | 308 | 7 | 273 | 1.19e-61 | 209 |
| Msa0024940 | AT1G32330.1 | 39.032 | 310 | 123 | 5 | 22 | 308 | 7 | 273 | 1.24e-61 | 209 |
| Msa0024940 | AT3G02990.1 | 40.777 | 309 | 121 | 6 | 42 | 336 | 18 | 278 | 2.76e-60 | 205 |
| Msa0024940 | AT4G17750.1 | 38.318 | 321 | 119 | 7 | 24 | 308 | 19 | 296 | 7.88e-58 | 199 |
| Msa0024940 | AT3G22830.1 | 39.416 | 274 | 113 | 3 | 23 | 286 | 37 | 267 | 7.34e-57 | 194 |
| Msa0024940 | AT2G26150.1 | 41.313 | 259 | 101 | 4 | 34 | 285 | 31 | 245 | 1.51e-55 | 189 |
| Msa0024940 | AT2G26150.4 | 41.313 | 259 | 101 | 4 | 34 | 285 | 31 | 245 | 1.51e-55 | 189 |
| Msa0024940 | AT3G63350.1 | 40.984 | 244 | 99 | 2 | 34 | 277 | 15 | 213 | 1.03e-53 | 182 |
| Msa0024940 | AT3G51910.1 | 39.370 | 254 | 93 | 4 | 37 | 285 | 19 | 216 | 1.18e-49 | 171 |
| Msa0024940 | AT5G43840.1 | 35.294 | 289 | 123 | 6 | 32 | 317 | 4 | 231 | 7.97e-48 | 167 |
| Msa0024940 | AT5G54070.1 | 33.333 | 264 | 122 | 4 | 41 | 300 | 65 | 278 | 1.35e-42 | 154 |
| Msa0024940 | AT1G67970.1 | 34.701 | 268 | 128 | 4 | 45 | 308 | 17 | 241 | 2.22e-41 | 152 |
| Msa0024940 | AT4G13980.1 | 33.333 | 240 | 115 | 2 | 48 | 287 | 24 | 218 | 1.11e-39 | 150 |
| Msa0024940 | AT3G24520.1 | 36.797 | 231 | 82 | 5 | 45 | 275 | 15 | 181 | 7.29e-37 | 139 |
| Msa0024940 | AT5G45710.3 | 32.627 | 236 | 114 | 2 | 43 | 276 | 9 | 201 | 2.39e-34 | 132 |
| Msa0024940 | AT5G45710.1 | 32.627 | 236 | 114 | 2 | 43 | 276 | 9 | 201 | 2.39e-34 | 132 |
| Msa0024940 | AT4G18880.1 | 35.652 | 230 | 102 | 2 | 43 | 269 | 11 | 197 | 8.81e-33 | 129 |
| Msa0024940 | AT5G62020.1 | 40.541 | 148 | 45 | 1 | 41 | 188 | 17 | 121 | 7.25e-30 | 119 |
| Msa0024940 | AT1G46264.1 | 44.928 | 138 | 33 | 1 | 47 | 184 | 34 | 128 | 8.89e-30 | 120 |
| Msa0024940 | AT4G11660.1 | 42.361 | 144 | 40 | 1 | 41 | 184 | 53 | 153 | 3.20e-29 | 119 |
| Msa0024940 | AT4G36990.1 | 30.588 | 255 | 125 | 4 | 35 | 280 | 2 | 213 | 5.66e-29 | 116 |
| Msa0024940 | AT2G26150.3 | 46.154 | 143 | 69 | 3 | 150 | 285 | 49 | 190 | 7.91e-29 | 115 |
| Msa0024940 | AT2G26150.2 | 46.154 | 143 | 69 | 3 | 150 | 285 | 49 | 190 | 7.91e-29 | 115 |
| Msa0024940 | AT2G41690.1 | 40.141 | 142 | 42 | 1 | 41 | 182 | 34 | 132 | 1.11e-27 | 111 |
Find 109 sgRNAs with CRISPR-Local
Find 168 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAAAGATGAAGAAGAAAATT+TGG | 0.205164 | 1_1:+47833788 | None:intergenic |
| AATTCAGAAACTAATATTAT+TGG | 0.214900 | 1_1:-47831955 | Msa0024940:CDS |
| ACGACCGGCTTCCATGATTT+TGG | 0.229018 | 1_1:-47831531 | Msa0024940:three_prime_UTR |
| TTTGAAGGGTTTCAATCTAT+TGG | 0.240093 | 1_1:-47831844 | Msa0024940:CDS |
| GAAGTTTGGGTATTGATAAT+TGG | 0.249663 | 1_1:-47831651 | Msa0024940:CDS |
| GAAACAAATGGTATCTTTCT+TGG | 0.279705 | 1_1:-47832319 | Msa0024940:CDS |
| CTTTGTTGTTTGGGATCCTT+TGG | 0.287745 | 1_1:-47833598 | Msa0024940:CDS |
| TCACCTTTAGTCATTTCTTT+AGG | 0.294012 | 1_1:+47832051 | None:intergenic |
| GATATGTGGGATATTGGTTT+TGG | 0.304447 | 1_1:-47831673 | Msa0024940:CDS |
| TTATCAAGCAAGAAGATATA+TGG | 0.310553 | 1_1:-47831810 | Msa0024940:CDS |
| TAGTGAGGTACCAACCAAAT+TGG | 0.312029 | 1_1:-47832158 | Msa0024940:CDS |
| TGGTGTTAGCTTTGTTGTTT+GGG | 0.316297 | 1_1:-47833607 | Msa0024940:CDS |
| GGCGAAGGATCATCTAGTTT+TGG | 0.320995 | 1_1:-47831934 | Msa0024940:CDS |
| TTGAAGGGTTTCAATCTATT+GGG | 0.328172 | 1_1:-47831843 | Msa0024940:CDS |
| TCAGGAATAACTTCTTCATT+TGG | 0.329440 | 1_1:+47831871 | None:intergenic |
| AAAATCTTGATTCATAAGTT+TGG | 0.330581 | 1_1:-47831561 | Msa0024940:three_prime_UTR |
| ATGGTGTTAGCTTTGTTGTT+TGG | 0.339618 | 1_1:-47833608 | Msa0024940:CDS |
| ACAAACTTTCTTCTAACTCT+TGG | 0.347851 | 1_1:+47832225 | None:intergenic |
| TACAATACAGTTAGCTGTAT+TGG | 0.359866 | 1_1:+47832932 | None:intergenic |
| AGTGAGGTACCAACCAAATT+GGG | 0.367055 | 1_1:-47832157 | Msa0024940:CDS |
| TCTCTAATAGCAGGGAAATC+TGG | 0.369457 | 1_1:-47832483 | Msa0024940:intron |
| ACAGCACCAACATTGAAGTT+AGG | 0.369889 | 1_1:+47831784 | None:intergenic |
| ATTAAGCTGACGAACAAAAC+TGG | 0.370082 | 1_1:+47833527 | None:intergenic |
| ATGTGGGATCCTATGAATTA+TGG | 0.371954 | 1_1:-47831736 | Msa0024940:CDS |
| TTTGAAAGAAATGGTGGAAC+TGG | 0.396168 | 1_1:+47833687 | None:intergenic |
| AAAGATGAAGAAGAAAATTT+GGG | 0.405694 | 1_1:+47833789 | None:intergenic |
| GAGACTCCTACTGCTGGAAT+TGG | 0.414069 | 1_1:-47833124 | Msa0024940:CDS |
| AGGTTGAGATTGAAAGATTG+AGG | 0.415211 | 1_1:-47832455 | Msa0024940:CDS |
| ATGTCAGATATGTGGGATAT+TGG | 0.416242 | 1_1:-47831679 | Msa0024940:CDS |
| TGAGATTGAAAGATTGAGGA+AGG | 0.438960 | 1_1:-47832451 | Msa0024940:CDS |
| TCAGATACTCCATAATTCAT+AGG | 0.440777 | 1_1:+47831727 | None:intergenic |
| TGCTCAAAGGCAACAATTGT+AGG | 0.443415 | 1_1:+47831434 | None:intergenic |
| GTTGGATCTTCTTCTGATGC+AGG | 0.443789 | 1_1:-47832668 | Msa0024940:intron |
| AAGATGAAAATCCCTTGAAA+AGG | 0.445857 | 1_1:+47833076 | None:intergenic |
| TTACATTCAATCAATTCATC+GGG | 0.450505 | 1_1:-47831270 | Msa0024940:three_prime_UTR |
| TTTGAGCAATTATAGTTCCT+AGG | 0.453116 | 1_1:-47831419 | Msa0024940:three_prime_UTR |
| TGAAACCCTTCAAAATTCTC+AGG | 0.455295 | 1_1:+47831853 | None:intergenic |
| GCAAGATTGACACCGACAAA+TGG | 0.456806 | 1_1:-47832787 | Msa0024940:CDS |
| TCGTCAGCTTAATACTTATG+TGG | 0.457473 | 1_1:-47833517 | Msa0024940:CDS |
| GAAGAAGAAAATGTCAAAGA+TGG | 0.457561 | 1_1:-47832186 | Msa0024940:CDS |
| ATTACATTCAATCAATTCAT+CGG | 0.461570 | 1_1:-47831271 | Msa0024940:three_prime_UTR |
| TAGTGATGTTCCTGTGCCTA+TGG | 0.466887 | 1_1:-47833727 | Msa0024940:CDS |
| CTTTGAATCCGATCATATCA+TGG | 0.467206 | 1_1:-47833638 | Msa0024940:CDS |
| TGTAACTTCTGCCAAAATCA+TGG | 0.468787 | 1_1:+47831520 | None:intergenic |
| GAATATGAAGCATCAGCTAT+AGG | 0.469331 | 1_1:-47833762 | Msa0024940:CDS |
| TGACTATCTATTTCATCAAA+AGG | 0.470522 | 1_1:+47831613 | None:intergenic |
| TATCAAGCAAGAAGATATAT+GGG | 0.482434 | 1_1:-47831809 | Msa0024940:CDS |
| CAGCAAGTTGGTAACTATGT+TGG | 0.484482 | 1_1:-47832686 | Msa0024940:CDS |
| CAGCACCAACATTGAAGTTA+GGG | 0.486019 | 1_1:+47831785 | None:intergenic |
| AATTATGGAGTATCTGACTT+TGG | 0.488166 | 1_1:-47831721 | Msa0024940:CDS |
| TTGAGCAATTATAGTTCCTA+GGG | 0.491827 | 1_1:-47831418 | Msa0024940:three_prime_UTR |
| AGATGAAAATCCCTTGAAAA+GGG | 0.492699 | 1_1:+47833077 | None:intergenic |
| CAAGATTGACACCGACAAAT+GGG | 0.503413 | 1_1:-47832786 | Msa0024940:CDS |
| GAAACTAATATTATTGGCGA+AGG | 0.504296 | 1_1:-47831949 | Msa0024940:CDS |
| TCAGCTATAGGTGGTGGTAC+TGG | 0.505325 | 1_1:-47833750 | Msa0024940:CDS |
| AGCGCGACTTAAGCAGAAGA+AGG | 0.506475 | 1_1:-47832268 | Msa0024940:CDS |
| CTACCTAAAGAAATGACTAA+AGG | 0.514970 | 1_1:-47832054 | Msa0024940:CDS |
| TCAAAAGGAGATTCATCAGC+TGG | 0.517066 | 1_1:+47831628 | None:intergenic |
| TTGAAAGATTGAGGAAGGAG+AGG | 0.521106 | 1_1:-47832446 | Msa0024940:CDS |
| GATATGATCGGATTCAAAGA+AGG | 0.522372 | 1_1:+47833642 | None:intergenic |
| CGTCAGCTTAATACTTATGT+GGG | 0.527984 | 1_1:-47833516 | Msa0024940:intron |
| CATTCAGAGACTCCTACTGC+TGG | 0.530276 | 1_1:-47833130 | Msa0024940:CDS |
| AGATCAAGTGAAAGATAGTG+AGG | 0.532262 | 1_1:+47832075 | None:intergenic |
| TTGAAAGAAATGGTGGAACT+GGG | 0.536323 | 1_1:+47833688 | None:intergenic |
| AACAACAAAGCTAACACCAT+TGG | 0.540487 | 1_1:+47833611 | None:intergenic |
| GTCCGGATTTGAAAACAACT+TGG | 0.541092 | 1_1:+47832296 | None:intergenic |
| TGAACAAAGACAGAAACAAA+TGG | 0.541684 | 1_1:-47832331 | Msa0024940:CDS |
| ACTGCTGGAATTGGCAACAT+AGG | 0.543095 | 1_1:-47833115 | Msa0024940:CDS |
| CGAATGACGGCTAGTCACGC+AGG | 0.554003 | 1_1:-47832381 | Msa0024940:CDS |
| CATTCAATCAATTCATCGGG+TGG | 0.556882 | 1_1:-47831267 | Msa0024940:three_prime_UTR |
| ATTTGTCGGTGTCAATCTTG+CGG | 0.568858 | 1_1:+47832789 | None:intergenic |
| GATGAATATGCTGCAATGCA+TGG | 0.570282 | 1_1:-47831991 | Msa0024940:CDS |
| TGGGACCCTAACTTCAATGT+TGG | 0.572995 | 1_1:-47831790 | Msa0024940:CDS |
| TCGGAGTTTCAATAAAATCA+CGG | 0.575050 | 1_1:-47831495 | Msa0024940:three_prime_UTR |
| ATAACTCTTGCAAACTCCAA+AGG | 0.576307 | 1_1:+47833582 | None:intergenic |
| GTGGTGACATGTCAGATATG+TGG | 0.577350 | 1_1:-47831687 | Msa0024940:CDS |
| TTTAAGTAATTTAGTATCAG+CGG | 0.578690 | 1_1:-47831237 | Msa0024940:three_prime_UTR |
| GAAGCATCAGCTATAGGTGG+TGG | 0.582607 | 1_1:-47833756 | Msa0024940:CDS |
| ATCATATCATGGAGTTCCAA+TGG | 0.583067 | 1_1:-47833627 | Msa0024940:CDS |
| TTGGAACTCCATGATATGAT+CGG | 0.584421 | 1_1:+47833630 | None:intergenic |
| ACTTGTTGAAAAGCATTCAA+AGG | 0.586884 | 1_1:-47832727 | Msa0024940:CDS |
| TCTGCCAAAATCATGGAAGC+CGG | 0.586953 | 1_1:+47831527 | None:intergenic |
| CTCATCTGCAAACACTCCAT+AGG | 0.589952 | 1_1:+47833711 | None:intergenic |
| GTGAGGTACCAACCAAATTG+GGG | 0.592193 | 1_1:-47832156 | Msa0024940:CDS |
| ATATGATCGGATTCAAAGAA+GGG | 0.594477 | 1_1:+47833643 | None:intergenic |
| ATGTTGCCAATTCCAGCAGT+AGG | 0.594776 | 1_1:+47833118 | None:intergenic |
| TTGTTGTGTTTGAAGTGTCT+AGG | 0.595204 | 1_1:+47833555 | None:intergenic |
| AAGTTTGGCAGAATCACGAC+CGG | 0.596934 | 1_1:-47831546 | Msa0024940:three_prime_UTR |
| TGCAAACACTCCATAGGCAC+AGG | 0.597520 | 1_1:+47833717 | None:intergenic |
| ACGCAGGTAATGTGAATCAA+AGG | 0.601321 | 1_1:-47832365 | Msa0024940:CDS |
| TAGGAACTATAATTGCTCAA+AGG | 0.601783 | 1_1:+47831421 | None:intergenic |
| TTTGATGAAATAGATAGTCA+AGG | 0.610338 | 1_1:-47831610 | Msa0024940:CDS |
| TATTCAATAATATGACCCCT+AGG | 0.610454 | 1_1:+47831402 | None:intergenic |
| TGGTGACATGTCAGATATGT+GGG | 0.612349 | 1_1:-47831686 | Msa0024940:CDS |
| CAAACTGTGGGAATGAGATG+TGG | 0.613012 | 1_1:-47831753 | Msa0024940:CDS |
| ACGTCTCAATCTCAGCAAGT+TGG | 0.616416 | 1_1:-47832698 | Msa0024940:CDS |
| ACAGCAGCAACAACGAATGA+CGG | 0.617265 | 1_1:-47832394 | Msa0024940:CDS |
| GACTTTGGAGTTGTTACAAG+TGG | 0.618117 | 1_1:-47831706 | Msa0024940:CDS |
| AGCAGGGAAATCTGGAGTCG+AGG | 0.619956 | 1_1:-47832475 | Msa0024940:intron |
| TCAAAGATGGAAAGATAGTG+AGG | 0.635058 | 1_1:-47832173 | Msa0024940:CDS |
| CTGTTGCTACTTCAAACTGT+GGG | 0.638412 | 1_1:-47831765 | Msa0024940:CDS |
| GATGAAATAGATAGTCAAGG+TGG | 0.640962 | 1_1:-47831607 | Msa0024940:CDS |
| GACTGTGTTAATGCAAGAAG+TGG | 0.653059 | 1_1:-47832424 | Msa0024940:CDS |
| AAACTGTGGGAATGAGATGT+GGG | 0.653938 | 1_1:-47831752 | Msa0024940:CDS |
| GCTGTTGCTACTTCAAACTG+TGG | 0.663813 | 1_1:-47831766 | Msa0024940:CDS |
| TATGAAGCATCAGCTATAGG+TGG | 0.681407 | 1_1:-47833759 | Msa0024940:CDS |
| CTTGCTGAGATTGAGACGTG+CGG | 0.690178 | 1_1:+47832702 | None:intergenic |
| TGAGCAATTATAGTTCCTAG+GGG | 0.695557 | 1_1:-47831417 | Msa0024940:three_prime_UTR |
| TGAGGTACCAACCAAATTGG+GGG | 0.710225 | 1_1:-47832155 | Msa0024940:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTACATTACATAGATTAATA+GGG | + | chr1_1:47831600-47831619 | None:intergenic | 15.0% |
| !! | AATTCAGAAACTAATATTAT+TGG | - | chr1_1:47833084-47833103 | Msa0024940:CDS | 15.0% |
| !! | AAAGATGAAGAAGAAAATTT+GGG | + | chr1_1:47831253-47831272 | None:intergenic | 20.0% |
| !!! | TCAAATGTTTTTGAAAGAAA+TGG | + | chr1_1:47831364-47831383 | None:intergenic | 20.0% |
| !! | TCTTTCAAAAACATTTGATT+TGG | - | chr1_1:47831366-47831385 | Msa0024940:three_prime_UTR | 20.0% |
| !! | TACATTACATAGATTAATAG+GGG | + | chr1_1:47831599-47831618 | None:intergenic | 20.0% |
| !! | GTTACATTACATAGATTAAT+AGG | + | chr1_1:47831601-47831620 | None:intergenic | 20.0% |
| !! | AACAATTTGATGTATCAATT+GGG | - | chr1_1:47831714-47831733 | Msa0024940:CDS | 20.0% |
| !! | TTATTCATTCTCAGATAATT+TGG | - | chr1_1:47832209-47832228 | Msa0024940:CDS | 20.0% |
| !!! | AACATTTTTTCCTTTGAAAA+GGG | + | chr1_1:47833142-47833161 | None:intergenic | 20.0% |
| !!! | TAACATTTTTTCCTTTGAAA+AGG | + | chr1_1:47833143-47833162 | None:intergenic | 20.0% |
| !!! | TTATGAATCAAGATTTTCTT+AGG | + | chr1_1:47833475-47833494 | None:intergenic | 20.0% |
| !! | AAAATCTTGATTCATAAGTT+TGG | - | chr1_1:47833478-47833497 | Msa0024940:intron | 20.0% |
| !! | ATTACATTCAATCAATTCAT+CGG | - | chr1_1:47833768-47833787 | Msa0024940:CDS | 20.0% |
| !! | TTTAAGTAATTTAGTATCAG+CGG | - | chr1_1:47833802-47833821 | Msa0024940:CDS | 20.0% |
| ! | CAAAGATGAAGAAGAAAATT+TGG | + | chr1_1:47831254-47831273 | None:intergenic | 25.0% |
| !! | ATTTTCTTCTTCATCTTTGA+TGG | - | chr1_1:47831255-47831274 | Msa0024940:three_prime_UTR | 25.0% |
| !!! | AATGTTTTTGAAAGAAATGG+TGG | + | chr1_1:47831361-47831380 | None:intergenic | 25.0% |
| ! | TTCAATCAACAAACACAAAA+GGG | + | chr1_1:47831696-47831715 | None:intergenic | 25.0% |
| ! | GAACAATTTGATGTATCAAT+TGG | - | chr1_1:47831713-47831732 | Msa0024940:CDS | 25.0% |
| !!! | TAAGCTTGTCTTTTTTGTTT+TGG | - | chr1_1:47832067-47832086 | Msa0024940:CDS | 25.0% |
| ! | AGAATGAATAAACCAAACAT+AGG | + | chr1_1:47832200-47832219 | None:intergenic | 25.0% |
| !! | TCACATCAAACCTTTTATAT+AGG | - | chr1_1:47832444-47832463 | Msa0024940:CDS | 25.0% |
| !!! | AGTTTGTTAGCCTATATAAA+AGG | + | chr1_1:47832457-47832476 | None:intergenic | 25.0% |
| !! | TGACATTTTCTTCTTCATTT+TGG | + | chr1_1:47832849-47832868 | None:intergenic | 25.0% |
| !!! | ACATTTTTTCCTTTGAAAAG+GGG | + | chr1_1:47833141-47833160 | None:intergenic | 25.0% |
| !! | TTATTCCTGAGAATTTTGAA+GGG | - | chr1_1:47833181-47833200 | Msa0024940:intron | 25.0% |
| ! | TTATCAAGCAAGAAGATATA+TGG | - | chr1_1:47833229-47833248 | Msa0024940:intron | 25.0% |
| ! | TATCAAGCAAGAAGATATAT+GGG | - | chr1_1:47833230-47833249 | Msa0024940:intron | 25.0% |
| ! | TGACTATCTATTTCATCAAA+AGG | + | chr1_1:47833429-47833448 | None:intergenic | 25.0% |
| ! | TTTGATGAAATAGATAGTCA+AGG | - | chr1_1:47833429-47833448 | Msa0024940:intron | 25.0% |
| ! | AAAGAGAGTAACAAAAATTG+TGG | + | chr1_1:47833715-47833734 | None:intergenic | 25.0% |
| ! | TTACATTCAATCAATTCATC+GGG | - | chr1_1:47833769-47833788 | Msa0024940:CDS | 25.0% |
| !!! | GGAGAGTTTTTTTCATCATT+TGG | + | chr1_1:47831232-47831251 | None:intergenic | 30.0% |
| ATATGATCGGATTCAAAGAA+GGG | + | chr1_1:47831399-47831418 | None:intergenic | 30.0% | |
| TCAATCAACAAACACAAAAG+GGG | + | chr1_1:47831695-47831714 | None:intergenic | 30.0% | |
| GTTCAATCAACAAACACAAA+AGG | + | chr1_1:47831697-47831716 | None:intergenic | 30.0% | |
| !! | TGTGTTTTTGTTACTACTAG+TGG | - | chr1_1:47831808-47831827 | Msa0024940:CDS | 30.0% |
| AGATGAAAATCCCTTGAAAA+GGG | + | chr1_1:47831965-47831984 | None:intergenic | 30.0% | |
| AAGATGAAAATCCCTTGAAA+AGG | + | chr1_1:47831966-47831985 | None:intergenic | 30.0% | |
| TACAATACAGTTAGCTGTAT+TGG | + | chr1_1:47832110-47832129 | None:intergenic | 30.0% | |
| ATTGAAAAACTCCCATTTGT+CGG | + | chr1_1:47832267-47832286 | None:intergenic | 30.0% | |
| !! | AAATGGGAGTTTTTCAATGA+AGG | - | chr1_1:47832269-47832288 | Msa0024940:CDS | 30.0% |
| ! | TTCAATGAAGGTTTTCAGAA+AGG | - | chr1_1:47832281-47832300 | Msa0024940:CDS | 30.0% |
| !! | ACTTGTTGAAAAGCATTCAA+AGG | - | chr1_1:47832312-47832331 | Msa0024940:CDS | 30.0% |
| TAACTGTATCTCTAATAGCA+GGG | - | chr1_1:47832548-47832567 | Msa0024940:intron | 30.0% | |
| TGAACAAAGACAGAAACAAA+TGG | - | chr1_1:47832708-47832727 | Msa0024940:CDS | 30.0% | |
| GAAACAAATGGTATCTTTCT+TGG | - | chr1_1:47832720-47832739 | Msa0024940:CDS | 30.0% | |
| ACAAACTTTCTTCTAACTCT+TGG | + | chr1_1:47832817-47832836 | None:intergenic | 30.0% | |
| GAAGAAGAAAATGTCAAAGA+TGG | - | chr1_1:47832853-47832872 | Msa0024940:intron | 30.0% | |
| CTACCTAAAGAAATGACTAA+AGG | - | chr1_1:47832985-47833004 | Msa0024940:intron | 30.0% | |
| TCACCTTTAGTCATTTCTTT+AGG | + | chr1_1:47832991-47833010 | None:intergenic | 30.0% | |
| GAAACTAATATTATTGGCGA+AGG | - | chr1_1:47833090-47833109 | Msa0024940:CDS | 30.0% | |
| TCAGGAATAACTTCTTCATT+TGG | + | chr1_1:47833171-47833190 | None:intergenic | 30.0% | |
| ! | GTTATTCCTGAGAATTTTGA+AGG | - | chr1_1:47833180-47833199 | Msa0024940:intron | 30.0% |
| TTTGAAGGGTTTCAATCTAT+TGG | - | chr1_1:47833195-47833214 | Msa0024940:intron | 30.0% | |
| TTGAAGGGTTTCAATCTATT+GGG | - | chr1_1:47833196-47833215 | Msa0024940:intron | 30.0% | |
| TCAGATACTCCATAATTCAT+AGG | + | chr1_1:47833315-47833334 | None:intergenic | 30.0% | |
| ! | AATTATGGAGTATCTGACTT+TGG | - | chr1_1:47833318-47833337 | Msa0024940:intron | 30.0% |
| !!! | GATATTGGTTTTGGAAGTTT+GGG | - | chr1_1:47833375-47833394 | Msa0024940:intron | 30.0% |
| !! | GAAGTTTGGGTATTGATAAT+TGG | - | chr1_1:47833388-47833407 | Msa0024940:intron | 30.0% |
| ! | GAATCAAGATTTTCTTAGGT+AGG | + | chr1_1:47833471-47833490 | None:intergenic | 30.0% |
| ! | TTTTGGCAGAAGTTACATTT+CGG | - | chr1_1:47833525-47833544 | Msa0024940:CDS | 30.0% |
| TCGGAGTTTCAATAAAATCA+CGG | - | chr1_1:47833544-47833563 | Msa0024940:CDS | 30.0% | |
| TAGGAACTATAATTGCTCAA+AGG | + | chr1_1:47833621-47833640 | None:intergenic | 30.0% | |
| TTTGAGCAATTATAGTTCCT+AGG | - | chr1_1:47833620-47833639 | Msa0024940:CDS | 30.0% | |
| TTGAGCAATTATAGTTCCTA+GGG | - | chr1_1:47833621-47833640 | Msa0024940:CDS | 30.0% | |
| TATTCAATAATATGACCCCT+AGG | + | chr1_1:47833640-47833659 | None:intergenic | 30.0% | |
| ! | GAATATGAAGCATCAGCTAT+AGG | - | chr1_1:47831277-47831296 | Msa0024940:three_prime_UTR | 35.0% |
| ! | TTGAAAGAAATGGTGGAACT+GGG | + | chr1_1:47831354-47831373 | None:intergenic | 35.0% |
| ! | TTTGAAAGAAATGGTGGAAC+TGG | + | chr1_1:47831355-47831374 | None:intergenic | 35.0% |
| GATATGATCGGATTCAAAGA+AGG | + | chr1_1:47831400-47831419 | None:intergenic | 35.0% | |
| CTTTGAATCCGATCATATCA+TGG | - | chr1_1:47831401-47831420 | Msa0024940:three_prime_UTR | 35.0% | |
| TTGGAACTCCATGATATGAT+CGG | + | chr1_1:47831412-47831431 | None:intergenic | 35.0% | |
| ATCATATCATGGAGTTCCAA+TGG | - | chr1_1:47831412-47831431 | Msa0024940:three_prime_UTR | 35.0% | |
| AACAACAAAGCTAACACCAT+TGG | + | chr1_1:47831431-47831450 | None:intergenic | 35.0% | |
| !! | ATGGTGTTAGCTTTGTTGTT+TGG | - | chr1_1:47831431-47831450 | Msa0024940:three_prime_UTR | 35.0% |
| !! | TGGTGTTAGCTTTGTTGTTT+GGG | - | chr1_1:47831432-47831451 | Msa0024940:three_prime_UTR | 35.0% |
| ATAACTCTTGCAAACTCCAA+AGG | + | chr1_1:47831460-47831479 | None:intergenic | 35.0% | |
| ! | TTGTTGTGTTTGAAGTGTCT+AGG | + | chr1_1:47831487-47831506 | None:intergenic | 35.0% |
| ATTAAGCTGACGAACAAAAC+TGG | + | chr1_1:47831515-47831534 | None:intergenic | 35.0% | |
| TCGTCAGCTTAATACTTATG+TGG | - | chr1_1:47831522-47831541 | Msa0024940:three_prime_UTR | 35.0% | |
| CGTCAGCTTAATACTTATGT+GGG | - | chr1_1:47831523-47831542 | Msa0024940:three_prime_UTR | 35.0% | |
| ! | ACTTTTCACAATGCCTCTAA+TGG | - | chr1_1:47831573-47831592 | Msa0024940:exon | 35.0% |
| CAATCAACAAACACAAAAGG+GGG | + | chr1_1:47831694-47831713 | None:intergenic | 35.0% | |
| ACTACACAATGCAATCAATC+AGG | + | chr1_1:47831884-47831903 | None:intergenic | 35.0% | |
| TTTCTTGAGTCTCCTATGTT+TGG | - | chr1_1:47832185-47832204 | Msa0024940:CDS | 35.0% | |
| !! | ATAATTTGGTGTTTGAGCAC+AGG | - | chr1_1:47832223-47832242 | Msa0024940:CDS | 35.0% |
| !! | TAATTTGGTGTTTGAGCACA+GGG | - | chr1_1:47832224-47832243 | Msa0024940:CDS | 35.0% |
| CTAACTGTATCTCTAATAGC+AGG | - | chr1_1:47832547-47832566 | Msa0024940:intron | 35.0% | |
| AGGTTGAGATTGAAAGATTG+AGG | - | chr1_1:47832584-47832603 | Msa0024940:intron | 35.0% | |
| TGAGATTGAAAGATTGAGGA+AGG | - | chr1_1:47832588-47832607 | Msa0024940:intron | 35.0% | |
| TCAAAGATGGAAAGATAGTG+AGG | - | chr1_1:47832866-47832885 | Msa0024940:intron | 35.0% | |
| ATGTCTATATTCCCCCAATT+TGG | + | chr1_1:47832898-47832917 | None:intergenic | 35.0% | |
| ! | ATAGTGAGGAGAGTTTTCAA+TGG | + | chr1_1:47832953-47832972 | None:intergenic | 35.0% |
| AGATCAAGTGAAAGATAGTG+AGG | + | chr1_1:47832967-47832986 | None:intergenic | 35.0% | |
| TGAAACCCTTCAAAATTCTC+AGG | + | chr1_1:47833189-47833208 | None:intergenic | 35.0% | |
| ATGTGGGATCCTATGAATTA+TGG | - | chr1_1:47833303-47833322 | Msa0024940:intron | 35.0% | |
| ATGTCAGATATGTGGGATAT+TGG | - | chr1_1:47833360-47833379 | Msa0024940:intron | 35.0% | |
| !!! | GATATGTGGGATATTGGTTT+TGG | - | chr1_1:47833366-47833385 | Msa0024940:intron | 35.0% |
| !!! | GGATATTGGTTTTGGAAGTT+TGG | - | chr1_1:47833374-47833393 | Msa0024940:intron | 35.0% |
| GATGAAATAGATAGTCAAGG+TGG | - | chr1_1:47833432-47833451 | Msa0024940:intron | 35.0% | |
| TGTAACTTCTGCCAAAATCA+TGG | + | chr1_1:47833522-47833541 | None:intergenic | 35.0% | |
| TGAGCAATTATAGTTCCTAG+GGG | - | chr1_1:47833622-47833641 | Msa0024940:CDS | 35.0% | |
| ! | TATGAAGCATCAGCTATAGG+TGG | - | chr1_1:47831280-47831299 | Msa0024940:three_prime_UTR | 40.0% |
| !! | CTTTGTTGTTTGGGATCCTT+TGG | - | chr1_1:47831441-47831460 | Msa0024940:three_prime_UTR | 40.0% |
| AGATTAATAGGGGCCATTAG+AGG | + | chr1_1:47831589-47831608 | None:intergenic | 40.0% | |
| ACACAATGCAATCAATCAGG+AGG | + | chr1_1:47831881-47831900 | None:intergenic | 40.0% | |
| ! | AATGTTGCTCTCCCTTTTCA+AGG | - | chr1_1:47831951-47831970 | Msa0024940:CDS | 40.0% |
| ! | ATGTTGCTCTCCCTTTTCAA+GGG | - | chr1_1:47831952-47831971 | Msa0024940:CDS | 40.0% |
| ! | CAAGGGATTTTCATCTTCCA+AGG | - | chr1_1:47831969-47831988 | Msa0024940:CDS | 40.0% |
| ! | GGATTTTCATCTTCCAAGGT+AGG | - | chr1_1:47831973-47831992 | Msa0024940:CDS | 40.0% |
| TGAAACACAGAATCCTACCT+TGG | + | chr1_1:47831989-47832008 | None:intergenic | 40.0% | |
| !! | ATTTGTCGGTGTCAATCTTG+CGG | + | chr1_1:47832253-47832272 | None:intergenic | 40.0% |
| CAAGATTGACACCGACAAAT+GGG | - | chr1_1:47832253-47832272 | Msa0024940:CDS | 40.0% | |
| !! | CAGCAAGTTGGTAACTATGT+TGG | - | chr1_1:47832353-47832372 | Msa0024940:CDS | 40.0% |
| TCTCTAATAGCAGGGAAATC+TGG | - | chr1_1:47832556-47832575 | Msa0024940:intron | 40.0% | |
| TTGAAAGATTGAGGAAGGAG+AGG | - | chr1_1:47832593-47832612 | Msa0024940:intron | 40.0% | |
| GACTGTGTTAATGCAAGAAG+TGG | - | chr1_1:47832615-47832634 | Msa0024940:intron | 40.0% | |
| ACGCAGGTAATGTGAATCAA+AGG | - | chr1_1:47832674-47832693 | Msa0024940:CDS | 40.0% | |
| !! | GGCCAAGTTGTTTTCAAATC+CGG | - | chr1_1:47832741-47832760 | Msa0024940:CDS | 40.0% |
| GTCCGGATTTGAAAACAACT+TGG | + | chr1_1:47832746-47832765 | None:intergenic | 40.0% | |
| TTAAGTCGCGCTAAAAAGTC+CGG | + | chr1_1:47832763-47832782 | None:intergenic | 40.0% | |
| ! | TAGTGAGGTACCAACCAAAT+TGG | - | chr1_1:47832881-47832900 | Msa0024940:intron | 40.0% |
| ! | AGTGAGGTACCAACCAAATT+GGG | - | chr1_1:47832882-47832901 | Msa0024940:intron | 40.0% |
| CTATATTCCCCCAATTTGGT+TGG | + | chr1_1:47832894-47832913 | None:intergenic | 40.0% | |
| ! | GGAGAGTTTTCAATGGAAAC+TGG | + | chr1_1:47832946-47832965 | None:intergenic | 40.0% |
| GATGAATATGCTGCAATGCA+TGG | - | chr1_1:47833048-47833067 | Msa0024940:intron | 40.0% | |
| ! | CTTGATGAACCCCTTTTCAA+AGG | - | chr1_1:47833129-47833148 | Msa0024940:CDS | 40.0% |
| CAGCACCAACATTGAAGTTA+GGG | + | chr1_1:47833257-47833276 | None:intergenic | 40.0% | |
| ACAGCACCAACATTGAAGTT+AGG | + | chr1_1:47833258-47833277 | None:intergenic | 40.0% | |
| ! | CTGTTGCTACTTCAAACTGT+GGG | - | chr1_1:47833274-47833293 | Msa0024940:intron | 40.0% |
| AAACTGTGGGAATGAGATGT+GGG | - | chr1_1:47833287-47833306 | Msa0024940:intron | 40.0% | |
| !! | GACTTTGGAGTTGTTACAAG+TGG | - | chr1_1:47833333-47833352 | Msa0024940:intron | 40.0% |
| TGGTGACATGTCAGATATGT+GGG | - | chr1_1:47833353-47833372 | Msa0024940:intron | 40.0% | |
| TCAAAAGGAGATTCATCAGC+TGG | + | chr1_1:47833414-47833433 | None:intergenic | 40.0% | |
| TGCTCAAAGGCAACAATTGT+AGG | + | chr1_1:47833608-47833627 | None:intergenic | 40.0% | |
| CATTCAATCAATTCATCGGG+TGG | - | chr1_1:47833772-47833791 | Msa0024940:CDS | 40.0% | |
| TAGTGATGTTCCTGTGCCTA+TGG | - | chr1_1:47831312-47831331 | Msa0024940:three_prime_UTR | 45.0% | |
| CTCATCTGCAAACACTCCAT+AGG | + | chr1_1:47831331-47831350 | None:intergenic | 45.0% | |
| ACAAACACAAAAGGGGGAGA+GGG | + | chr1_1:47831688-47831707 | None:intergenic | 45.0% | |
| AACAAACACAAAAGGGGGAG+AGG | + | chr1_1:47831689-47831708 | None:intergenic | 45.0% | |
| ATGTTGCCAATTCCAGCAGT+AGG | + | chr1_1:47831924-47831943 | None:intergenic | 45.0% | |
| ACTGCTGGAATTGGCAACAT+AGG | - | chr1_1:47831924-47831943 | Msa0024940:CDS | 45.0% | |
| GCAAGATTGACACCGACAAA+TGG | - | chr1_1:47832252-47832271 | Msa0024940:CDS | 45.0% | |
| ACGTCTCAATCTCAGCAAGT+TGG | - | chr1_1:47832341-47832360 | Msa0024940:CDS | 45.0% | |
| GTTGGATCTTCTTCTGATGC+AGG | - | chr1_1:47832371-47832390 | Msa0024940:CDS | 45.0% | |
| ACAGCAGCAACAACGAATGA+CGG | - | chr1_1:47832645-47832664 | Msa0024940:intron | 45.0% | |
| ! | GTGAGGTACCAACCAAATTG+GGG | - | chr1_1:47832883-47832902 | Msa0024940:intron | 45.0% |
| ! | TGAGGTACCAACCAAATTGG+GGG | - | chr1_1:47832884-47832903 | Msa0024940:intron | 45.0% |
| !! | GGCGAAGGATCATCTAGTTT+TGG | - | chr1_1:47833105-47833124 | Msa0024940:CDS | 45.0% |
| TGGGACCCTAACTTCAATGT+TGG | - | chr1_1:47833249-47833268 | Msa0024940:intron | 45.0% | |
| ! | GCTGTTGCTACTTCAAACTG+TGG | - | chr1_1:47833273-47833292 | Msa0024940:intron | 45.0% |
| CAAACTGTGGGAATGAGATG+TGG | - | chr1_1:47833286-47833305 | Msa0024940:intron | 45.0% | |
| GTGGTGACATGTCAGATATG+TGG | - | chr1_1:47833352-47833371 | Msa0024940:intron | 45.0% | |
| AAGTTTGGCAGAATCACGAC+CGG | - | chr1_1:47833493-47833512 | Msa0024940:intron | 45.0% | |
| TCTGCCAAAATCATGGAAGC+CGG | + | chr1_1:47833515-47833534 | None:intergenic | 45.0% | |
| !!! | TATTTTTTCTTTTTTTTTTT+TGG | - | chr1_1:47831631-47831650 | Msa0024940:CDS | 5.0% |
| ! | GAAGCATCAGCTATAGGTGG+TGG | - | chr1_1:47831283-47831302 | Msa0024940:three_prime_UTR | 50.0% |
| ! | TCAGCTATAGGTGGTGGTAC+TGG | - | chr1_1:47831289-47831308 | Msa0024940:three_prime_UTR | 50.0% |
| TGCAAACACTCCATAGGCAC+AGG | + | chr1_1:47831325-47831344 | None:intergenic | 50.0% | |
| CATTCAGAGACTCCTACTGC+TGG | - | chr1_1:47831909-47831928 | Msa0024940:CDS | 50.0% | |
| GAGACTCCTACTGCTGGAAT+TGG | - | chr1_1:47831915-47831934 | Msa0024940:CDS | 50.0% | |
| CTTGCTGAGATTGAGACGTG+CGG | + | chr1_1:47832340-47832359 | None:intergenic | 50.0% | |
| AGCGCGACTTAAGCAGAAGA+AGG | - | chr1_1:47832771-47832790 | Msa0024940:CDS | 50.0% | |
| !! | ACGACCGGCTTCCATGATTT+TGG | - | chr1_1:47833508-47833527 | Msa0024940:intron | 50.0% |
| ! | AGCAGGGAAATCTGGAGTCG+AGG | - | chr1_1:47832564-47832583 | Msa0024940:intron | 55.0% |
| ! | CGAATGACGGCTAGTCACGC+AGG | - | chr1_1:47832658-47832677 | Msa0024940:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 47831223 | 47833838 | 47831223 | ID=Msa0024940;Name=Msa0024940 |
| chr1_1 | mRNA | 47831223 | 47833838 | 47831223 | ID=Msa0024940-mRNA-1;Parent=Msa0024940;Name=Msa0024940-mRNA-1;_AED=0.05;_eAED=0.07;_QI=0|0.25|0.4|1|1|1|5|362|500 |
| chr1_1 | exon | 47831223 | 47832492 | 47831223 | ID=Msa0024940-mRNA-1:exon:13636;Parent=Msa0024940-mRNA-1 |
| chr1_1 | exon | 47832669 | 47832816 | 47832669 | ID=Msa0024940-mRNA-1:exon:13635;Parent=Msa0024940-mRNA-1 |
| chr1_1 | exon | 47832928 | 47832964 | 47832928 | ID=Msa0024940-mRNA-1:exon:13634;Parent=Msa0024940-mRNA-1 |
| chr1_1 | exon | 47833071 | 47833158 | 47833071 | ID=Msa0024940-mRNA-1:exon:13633;Parent=Msa0024940-mRNA-1 |
| chr1_1 | exon | 47833517 | 47833838 | 47833517 | ID=Msa0024940-mRNA-1:exon:13632;Parent=Msa0024940-mRNA-1 |
| chr1_1 | CDS | 47833517 | 47833838 | 47833517 | ID=Msa0024940-mRNA-1:cds;Parent=Msa0024940-mRNA-1 |
| chr1_1 | CDS | 47833071 | 47833158 | 47833071 | ID=Msa0024940-mRNA-1:cds;Parent=Msa0024940-mRNA-1 |
| chr1_1 | CDS | 47832928 | 47832964 | 47832928 | ID=Msa0024940-mRNA-1:cds;Parent=Msa0024940-mRNA-1 |
| chr1_1 | CDS | 47832669 | 47832816 | 47832669 | ID=Msa0024940-mRNA-1:cds;Parent=Msa0024940-mRNA-1 |
| chr1_1 | CDS | 47831585 | 47832492 | 47831585 | ID=Msa0024940-mRNA-1:cds;Parent=Msa0024940-mRNA-1 |
| chr1_1 | three_prime_UTR | 47831223 | 47831584 | 47831223 | ID=Msa0024940-mRNA-1:three_prime_utr;Parent=Msa0024940-mRNA-1 |
| Gene Sequence |
| Protein sequence |
