Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0345570 | XP_013460852.1 | 90.698 | 86 | 8 | 0 | 3 | 88 | 77 | 162 | 2.21e-50 | 166 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0345570 | sp|Q9LX15|DFC_ARATH | 42.667 | 75 | 43 | 0 | 6 | 80 | 80 | 154 | 4.89e-13 | 63.5 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0345570 | B7FN25 | 90.698 | 86 | 8 | 0 | 3 | 88 | 77 | 162 | 1.06e-50 | 166 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0345570 | Msa0346460 | 0.920063 | 2.054450e-87 | -8.615850e-47 |
| Msa0345570 | Msa0346560 | 0.884898 | 1.293178e-71 | -8.615850e-47 |
| Msa0345570 | Msa0391720 | 0.942991 | 2.683613e-102 | -8.615850e-47 |
| Msa0345570 | Msa0391780 | 0.963848 | 1.369260e-122 | -8.615850e-47 |
| Msa0345570 | Msa0391840 | 0.904934 | 7.301537e-80 | -8.615850e-47 |
| Msa0345570 | Msa0391880 | 0.926152 | 6.939594e-91 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0345570 | MtrunA17_Chr3g0115561 | 90.698 | 86 | 8 | 0 | 3 | 88 | 77 | 162 | 2.03e-54 | 166 |
| Msa0345570 | MtrunA17_Chr3g0124301 | 35.802 | 81 | 50 | 2 | 1 | 79 | 72 | 152 | 2.13e-14 | 64.3 |
| Msa0345570 | MtrunA17_Chr2g0283801 | 37.349 | 83 | 49 | 1 | 2 | 81 | 75 | 157 | 1.27e-12 | 59.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0345570 | AT4G08685.1 | 44.048 | 84 | 47 | 0 | 3 | 86 | 76 | 159 | 1.71e-22 | 85.5 |
| Msa0345570 | AT1G78040.1 | 40.230 | 87 | 51 | 1 | 1 | 87 | 78 | 163 | 1.60e-15 | 67.8 |
| Msa0345570 | AT1G78040.3 | 40.230 | 87 | 51 | 1 | 1 | 87 | 78 | 163 | 1.60e-15 | 67.8 |
| Msa0345570 | AT1G78040.2 | 40.230 | 87 | 51 | 1 | 1 | 87 | 78 | 163 | 1.60e-15 | 67.8 |
| Msa0345570 | AT5G10130.1 | 42.667 | 75 | 43 | 0 | 6 | 80 | 80 | 154 | 4.97e-14 | 63.5 |
Find 22 sgRNAs with CRISPR-Local
Find 352 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGATTTCTAGCTGATGCAAC+TGG | 0.377402 | 3_1:+4909373 | Msa0345570:intron |
| CCTCAAGCAAATGCAGGAAT+TGG | 0.399028 | 3_1:+4909609 | Msa0345570:CDS |
| GGAGGCAATGCCGTTGTAAC+GGG | 0.439821 | 3_1:-4909521 | None:intergenic |
| AGTTGTAGCGAAAGAGCACC+TGG | 0.442879 | 3_1:+4909472 | Msa0345570:CDS |
| ATATACAATGTATGTGGATC+AGG | 0.452269 | 3_1:+4909399 | Msa0345570:CDS |
| AGCATTGGCAAACCTGTCAT+TGG | 0.466304 | 3_1:-4909542 | None:intergenic |
| CCAATTCCTGCATTTGCTTG+AGG | 0.488555 | 3_1:-4909609 | None:intergenic |
| TGGAGGCAATGCCGTTGTAA+CGG | 0.522858 | 3_1:-4909522 | None:intergenic |
| GGGTGAGAATAACGCGTGCT+TGG | 0.527810 | 3_1:-4909501 | None:intergenic |
| ACGGCATTGCCTCCAATGAC+AGG | 0.539090 | 3_1:+4909530 | Msa0345570:CDS |
| TGCTATGTTGTACATGGCAG+AGG | 0.540527 | 3_1:+4909561 | Msa0345570:CDS |
| TGCCAATGCTATGTTGTACA+TGG | 0.550672 | 3_1:+4909555 | Msa0345570:CDS |
| TGGAGAATATACAATGTATG+TGG | 0.553534 | 3_1:+4909393 | Msa0345570:CDS |
| ACGCGTGCTTGGTCACGCCC+AGG | 0.556503 | 3_1:-4909490 | None:intergenic |
| ATTGGCAAACCTGTCATTGG+AGG | 0.565263 | 3_1:-4909539 | None:intergenic |
| TGCCATGTACAACATAGCAT+TGG | 0.582518 | 3_1:-4909557 | None:intergenic |
| GTTATTCTCACCCGTTACAA+CGG | 0.584831 | 3_1:+4909511 | Msa0345570:CDS |
| TGAGGTCCTCAAGCAAATGC+AGG | 0.587649 | 3_1:+4909603 | Msa0345570:CDS |
| GGTTGCTTCTAGCTGTGCTG+AGG | 0.620393 | 3_1:+4909585 | Msa0345570:CDS |
| CTTTCGCTACAACTACGCTC+AGG | 0.623193 | 3_1:-4909463 | None:intergenic |
| TATGTTGTACATGGCAGAGG+AGG | 0.691786 | 3_1:+4909564 | Msa0345570:CDS |
| GTTGTAGCGAAAGAGCACCT+GGG | 0.714138 | 3_1:+4909473 | Msa0345570:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CTAAATTATGTAAAAATAAA+CGG | - | chr3_1:4907916-4907935 | None:intergenic | 10.0% |
| !! | TTGTTATAAAAAACAATAAA+GGG | - | chr3_1:4909327-4909346 | None:intergenic | 10.0% |
| !! | AATAAAGAATAAAAATGAAA+GGG | - | chr3_1:4909350-4909369 | None:intergenic | 10.0% |
| !! | AAATAAAGAATAAAAATGAA+AGG | - | chr3_1:4909351-4909370 | None:intergenic | 10.0% |
| !! | CTAAATTATGTAAAAATAAA+CGG | - | chr3_1:4907916-4907935 | None:intergenic | 10.0% |
| !! | TTGTTATAAAAAACAATAAA+GGG | - | chr3_1:4909327-4909346 | None:intergenic | 10.0% |
| !! | AATAAAGAATAAAAATGAAA+GGG | - | chr3_1:4909350-4909369 | None:intergenic | 10.0% |
| !! | AAATAAAGAATAAAAATGAA+AGG | - | chr3_1:4909351-4909370 | None:intergenic | 10.0% |
| !! | AACAATAATAAAACCTAATT+TGG | - | chr3_1:4907531-4907550 | None:intergenic | 15.0% |
| !!! | TTATTGTTATTATTGTATCA+AGG | + | chr3_1:4907543-4907562 | Msa0345570:intron | 15.0% |
| !! | TTAATGCAGTTATTTATTTA+TGG | + | chr3_1:4909017-4909036 | Msa0345570:intron | 15.0% |
| !! | ATTTATTTATGGAAAAAGAT+TGG | + | chr3_1:4909028-4909047 | Msa0345570:intron | 15.0% |
| !! | GTTGTTATAAAAAACAATAA+AGG | - | chr3_1:4909328-4909347 | None:intergenic | 15.0% |
| !! | AACAATAATAAAACCTAATT+TGG | - | chr3_1:4907531-4907550 | None:intergenic | 15.0% |
| !!! | TTATTGTTATTATTGTATCA+AGG | + | chr3_1:4907543-4907562 | Msa0345570:intron | 15.0% |
| !! | TTAATGCAGTTATTTATTTA+TGG | + | chr3_1:4909017-4909036 | Msa0345570:intron | 15.0% |
| !! | ATTTATTTATGGAAAAAGAT+TGG | + | chr3_1:4909028-4909047 | Msa0345570:intron | 15.0% |
| !! | GTTGTTATAAAAAACAATAA+AGG | - | chr3_1:4909328-4909347 | None:intergenic | 15.0% |
| !! | TTATATAGGGATACTTTATA+CGG | - | chr3_1:4907482-4907501 | None:intergenic | 20.0% |
| !!! | AATGTTTCAGTATTGATAAA+CGG | + | chr3_1:4908201-4908220 | Msa0345570:intron | 20.0% |
| !! | TAATGAAAAAATCATATCCT+AGG | - | chr3_1:4908323-4908342 | None:intergenic | 20.0% |
| !! | TTATAAAAAACAATAAAGGG+TGG | - | chr3_1:4909324-4909343 | None:intergenic | 20.0% |
| !! | TTATATAGGGATACTTTATA+CGG | - | chr3_1:4907482-4907501 | None:intergenic | 20.0% |
| !!! | AATGTTTCAGTATTGATAAA+CGG | + | chr3_1:4908201-4908220 | Msa0345570:intron | 20.0% |
| !! | TAATGAAAAAATCATATCCT+AGG | - | chr3_1:4908323-4908342 | None:intergenic | 20.0% |
| !! | TTATAAAAAACAATAAAGGG+TGG | - | chr3_1:4909324-4909343 | None:intergenic | 20.0% |
| !!! | CGTTTTTAAAAGAGGATAAA+CGG | - | chr3_1:4907408-4907427 | None:intergenic | 25.0% |
| ! | TATATAGGGATACTTTATAC+GGG | - | chr3_1:4907481-4907500 | None:intergenic | 25.0% |
| !! | TAAAGTATCCCTATATAATC+AGG | + | chr3_1:4907484-4907503 | Msa0345570:intron | 25.0% |
| !! | AAAGTATCCCTATATAATCA+GGG | + | chr3_1:4907485-4907504 | Msa0345570:intron | 25.0% |
| !! | AATTTGGTTCCAAAGAAAAT+AGG | - | chr3_1:4907515-4907534 | None:intergenic | 25.0% |
| !!! | ATTTTCTTTGGAACCAAATT+AGG | + | chr3_1:4907515-4907534 | Msa0345570:intron | 25.0% |
| ! | TTTAGTTGCAGTGAAATTTA+TGG | + | chr3_1:4907931-4907950 | Msa0345570:intron | 25.0% |
| ! | GTTTATCAATACTGAAACAT+TGG | - | chr3_1:4908202-4908221 | None:intergenic | 25.0% |
| ! | AGAAGTTAGTGTTCATATTT+AGG | + | chr3_1:4908389-4908408 | Msa0345570:intron | 25.0% |
| ! | GAAGTTAGTGTTCATATTTA+GGG | + | chr3_1:4908390-4908409 | Msa0345570:intron | 25.0% |
| ! | CATGGATCATTGTTAATTAA+AGG | + | chr3_1:4908674-4908693 | Msa0345570:intron | 25.0% |
| !! | TAGTTTGTAGAAAATGGAAA+AGG | + | chr3_1:4908740-4908759 | Msa0345570:intron | 25.0% |
| ! | AGTTTGTAGAAAATGGAAAA+GGG | + | chr3_1:4908741-4908760 | Msa0345570:intron | 25.0% |
| ! | TAGGAATAGGAATAACTTTA+CGG | + | chr3_1:4908816-4908835 | Msa0345570:intron | 25.0% |
| ! | TGATTACGAAGAAAAATTGT+GGG | - | chr3_1:4909227-4909246 | None:intergenic | 25.0% |
| !!! | CGTTTTTAAAAGAGGATAAA+CGG | - | chr3_1:4907408-4907427 | None:intergenic | 25.0% |
| ! | TATATAGGGATACTTTATAC+GGG | - | chr3_1:4907481-4907500 | None:intergenic | 25.0% |
| !! | TAAAGTATCCCTATATAATC+AGG | + | chr3_1:4907484-4907503 | Msa0345570:intron | 25.0% |
| !! | AAAGTATCCCTATATAATCA+GGG | + | chr3_1:4907485-4907504 | Msa0345570:intron | 25.0% |
| !! | AATTTGGTTCCAAAGAAAAT+AGG | - | chr3_1:4907515-4907534 | None:intergenic | 25.0% |
| !!! | ATTTTCTTTGGAACCAAATT+AGG | + | chr3_1:4907515-4907534 | Msa0345570:intron | 25.0% |
| ! | TTTAGTTGCAGTGAAATTTA+TGG | + | chr3_1:4907931-4907950 | Msa0345570:intron | 25.0% |
| ! | GTTTATCAATACTGAAACAT+TGG | - | chr3_1:4908202-4908221 | None:intergenic | 25.0% |
| ! | AGAAGTTAGTGTTCATATTT+AGG | + | chr3_1:4908389-4908408 | Msa0345570:intron | 25.0% |
| ! | GAAGTTAGTGTTCATATTTA+GGG | + | chr3_1:4908390-4908409 | Msa0345570:intron | 25.0% |
| ! | CATGGATCATTGTTAATTAA+AGG | + | chr3_1:4908674-4908693 | Msa0345570:intron | 25.0% |
| !! | TAGTTTGTAGAAAATGGAAA+AGG | + | chr3_1:4908740-4908759 | Msa0345570:intron | 25.0% |
| ! | AGTTTGTAGAAAATGGAAAA+GGG | + | chr3_1:4908741-4908760 | Msa0345570:intron | 25.0% |
| ! | TAGGAATAGGAATAACTTTA+CGG | + | chr3_1:4908816-4908835 | Msa0345570:intron | 25.0% |
| ! | TGATTACGAAGAAAAATTGT+GGG | - | chr3_1:4909227-4909246 | None:intergenic | 25.0% |
| !! | AATACGCACGTTTTTAAAAG+AGG | - | chr3_1:4907416-4907435 | None:intergenic | 30.0% |
| AGGAAAACCCTGATTATATA+GGG | - | chr3_1:4907495-4907514 | None:intergenic | 30.0% | |
| TAGGAAAACCCTGATTATAT+AGG | - | chr3_1:4907496-4907515 | None:intergenic | 30.0% | |
| ATTTCTTCCACAAGTTTCAA+CGG | - | chr3_1:4907699-4907718 | None:intergenic | 30.0% | |
| CAATCAAATCGTAAGTGTAT+AGG | - | chr3_1:4908157-4908176 | None:intergenic | 30.0% | |
| AGCAGATATATTTAACCCTT+GGG | + | chr3_1:4908256-4908275 | Msa0345570:intron | 30.0% | |
| ! | TTTTTCCTAGATTTTCCCAA+GGG | - | chr3_1:4908274-4908293 | None:intergenic | 30.0% |
| GTTACTTACATATATAGCCT+AGG | + | chr3_1:4908303-4908322 | Msa0345570:intron | 30.0% | |
| !!! | TGATAGGTAACTTTTTTTCC+TGG | - | chr3_1:4908464-4908483 | None:intergenic | 30.0% |
| AAAGTTACCTATCATAGCTT+TGG | + | chr3_1:4908470-4908489 | Msa0345570:intron | 30.0% | |
| ATCATATCCAAAGCTATGAT+AGG | - | chr3_1:4908480-4908499 | None:intergenic | 30.0% | |
| TTTGATTACTGATGACTTCA+TGG | + | chr3_1:4908656-4908675 | Msa0345570:intron | 30.0% | |
| GATCATTGTTAATTAAAGGC+TGG | + | chr3_1:4908678-4908697 | Msa0345570:intron | 30.0% | |
| ! | TTGCACTAGTTTGTAGAAAA+TGG | + | chr3_1:4908734-4908753 | Msa0345570:intron | 30.0% |
| TACAACTAAAGACTTGCATA+TGG | + | chr3_1:4908774-4908793 | Msa0345570:intron | 30.0% | |
| ACAACTAAAGACTTGCATAT+GGG | + | chr3_1:4908775-4908794 | Msa0345570:intron | 30.0% | |
| TAAACCTATATATCCCCTAA+AGG | + | chr3_1:4908883-4908902 | Msa0345570:intron | 30.0% | |
| AGATTGAGAAAATAGCTCAA+GGG | - | chr3_1:4908996-4909015 | None:intergenic | 30.0% | |
| AACATGAGAAATTTGTGGTA+GGG | - | chr3_1:4909195-4909214 | None:intergenic | 30.0% | |
| GTGATTACGAAGAAAAATTG+TGG | - | chr3_1:4909228-4909247 | None:intergenic | 30.0% | |
| TAAAAAACAATAAAGGGTGG+TGG | - | chr3_1:4909321-4909340 | None:intergenic | 30.0% | |
| TGGAGAATATACAATGTATG+TGG | + | chr3_1:4909393-4909412 | Msa0345570:CDS | 30.0% | |
| ATATACAATGTATGTGGATC+AGG | + | chr3_1:4909399-4909418 | Msa0345570:CDS | 30.0% | |
| !! | AATACGCACGTTTTTAAAAG+AGG | - | chr3_1:4907416-4907435 | None:intergenic | 30.0% |
| AGGAAAACCCTGATTATATA+GGG | - | chr3_1:4907495-4907514 | None:intergenic | 30.0% | |
| TAGGAAAACCCTGATTATAT+AGG | - | chr3_1:4907496-4907515 | None:intergenic | 30.0% | |
| ATTTCTTCCACAAGTTTCAA+CGG | - | chr3_1:4907699-4907718 | None:intergenic | 30.0% | |
| CAATCAAATCGTAAGTGTAT+AGG | - | chr3_1:4908157-4908176 | None:intergenic | 30.0% | |
| AGCAGATATATTTAACCCTT+GGG | + | chr3_1:4908256-4908275 | Msa0345570:intron | 30.0% | |
| ! | TTTTTCCTAGATTTTCCCAA+GGG | - | chr3_1:4908274-4908293 | None:intergenic | 30.0% |
| GTTACTTACATATATAGCCT+AGG | + | chr3_1:4908303-4908322 | Msa0345570:intron | 30.0% | |
| !!! | TGATAGGTAACTTTTTTTCC+TGG | - | chr3_1:4908464-4908483 | None:intergenic | 30.0% |
| AAAGTTACCTATCATAGCTT+TGG | + | chr3_1:4908470-4908489 | Msa0345570:intron | 30.0% | |
| ATCATATCCAAAGCTATGAT+AGG | - | chr3_1:4908480-4908499 | None:intergenic | 30.0% | |
| TTTGATTACTGATGACTTCA+TGG | + | chr3_1:4908656-4908675 | Msa0345570:intron | 30.0% | |
| GATCATTGTTAATTAAAGGC+TGG | + | chr3_1:4908678-4908697 | Msa0345570:intron | 30.0% | |
| ! | TTGCACTAGTTTGTAGAAAA+TGG | + | chr3_1:4908734-4908753 | Msa0345570:intron | 30.0% |
| TACAACTAAAGACTTGCATA+TGG | + | chr3_1:4908774-4908793 | Msa0345570:intron | 30.0% | |
| ACAACTAAAGACTTGCATAT+GGG | + | chr3_1:4908775-4908794 | Msa0345570:intron | 30.0% | |
| TAAACCTATATATCCCCTAA+AGG | + | chr3_1:4908883-4908902 | Msa0345570:intron | 30.0% | |
| AGATTGAGAAAATAGCTCAA+GGG | - | chr3_1:4908996-4909015 | None:intergenic | 30.0% | |
| AACATGAGAAATTTGTGGTA+GGG | - | chr3_1:4909195-4909214 | None:intergenic | 30.0% | |
| GTGATTACGAAGAAAAATTG+TGG | - | chr3_1:4909228-4909247 | None:intergenic | 30.0% | |
| TAAAAAACAATAAAGGGTGG+TGG | - | chr3_1:4909321-4909340 | None:intergenic | 30.0% | |
| TGGAGAATATACAATGTATG+TGG | + | chr3_1:4909393-4909412 | Msa0345570:CDS | 30.0% | |
| ATATACAATGTATGTGGATC+AGG | + | chr3_1:4909399-4909418 | Msa0345570:CDS | 30.0% | |
| GATACTTTATACGGGATACA+CGG | - | chr3_1:4907473-4907492 | None:intergenic | 35.0% | |
| ! | CAGGGTTTTCCTATTTTCTT+TGG | + | chr3_1:4907503-4907522 | Msa0345570:intron | 35.0% |
| !! | AAGAGTTGGTAGTGATGTTA+GGG | - | chr3_1:4907676-4907695 | None:intergenic | 35.0% |
| TTTGTTCCCTTGACAATAGA+GGG | - | chr3_1:4907830-4907849 | None:intergenic | 35.0% | |
| ! | TTTTGTTCCCTTGACAATAG+AGG | - | chr3_1:4907831-4907850 | None:intergenic | 35.0% |
| CATGCTTCAGTGAAGTATAA+GGG | - | chr3_1:4907862-4907881 | None:intergenic | 35.0% | |
| AAATATATCTGCTCTTCCGA+TGG | - | chr3_1:4908249-4908268 | None:intergenic | 35.0% | |
| GAGCAGATATATTTAACCCT+TGG | + | chr3_1:4908255-4908274 | Msa0345570:intron | 35.0% | |
| TTTAACCCTTGGGAAAATCT+AGG | + | chr3_1:4908266-4908285 | Msa0345570:intron | 35.0% | |
| ! | CTTTTTCCTAGATTTTCCCA+AGG | - | chr3_1:4908275-4908294 | None:intergenic | 35.0% |
| ! | TAGAGTACTATTTGACCCTT+TGG | + | chr3_1:4908433-4908452 | Msa0345570:intron | 35.0% |
| ! | AGAGTACTATTTGACCCTTT+GGG | + | chr3_1:4908434-4908453 | Msa0345570:intron | 35.0% |
| ! | TTTTTCCTGGATTTCCCAAA+GGG | - | chr3_1:4908451-4908470 | None:intergenic | 35.0% |
| !!! | TTTTTTCCTGGATTTCCCAA+AGG | - | chr3_1:4908452-4908471 | None:intergenic | 35.0% |
| AAAACTTAGTGTCCATACGT+AGG | + | chr3_1:4908556-4908575 | Msa0345570:intron | 35.0% | |
| AAACTTAGTGTCCATACGTA+GGG | + | chr3_1:4908557-4908576 | Msa0345570:intron | 35.0% | |
| CATTGTTAATTAAAGGCTGG+TGG | + | chr3_1:4908681-4908700 | Msa0345570:intron | 35.0% | |
| !! | GGAGTTTTTGCTATAGGAAT+AGG | + | chr3_1:4908803-4908822 | Msa0345570:intron | 35.0% |
| TGAAGTCGTTCAAATGTGAA+TGG | - | chr3_1:4908845-4908864 | None:intergenic | 35.0% | |
| TTTGAATGCAGCATCCTTTA+GGG | - | chr3_1:4908900-4908919 | None:intergenic | 35.0% | |
| ! | TTTTGAATGCAGCATCCTTT+AGG | - | chr3_1:4908901-4908920 | None:intergenic | 35.0% |
| TTGACACCTATGACTTCTTT+AGG | - | chr3_1:4908948-4908967 | None:intergenic | 35.0% | |
| AGAAGTCATAGGTGTCAATT+TGG | + | chr3_1:4908950-4908969 | Msa0345570:intron | 35.0% | |
| ! | TCAATTTGGTGAACTAGCTA+GGG | + | chr3_1:4908964-4908983 | Msa0345570:intron | 35.0% |
| CAGATTGAGAAAATAGCTCA+AGG | - | chr3_1:4908997-4909016 | None:intergenic | 35.0% | |
| AAAATACCCATGCCACATAA+GGG | - | chr3_1:4909088-4909107 | None:intergenic | 35.0% | |
| AAAAATACCCATGCCACATA+AGG | - | chr3_1:4909089-4909108 | None:intergenic | 35.0% | |
| GAACATGAGAAATTTGTGGT+AGG | - | chr3_1:4909196-4909215 | None:intergenic | 35.0% | |
| GAAGGAACATGAGAAATTTG+TGG | - | chr3_1:4909200-4909219 | None:intergenic | 35.0% | |
| AGAAAAATTGTGGGTTTGGA+AGG | - | chr3_1:4909218-4909237 | None:intergenic | 35.0% | |
| ACGAAGAAAAATTGTGGGTT+TGG | - | chr3_1:4909222-4909241 | None:intergenic | 35.0% | |
| AAGTAGCTTGAAGTTGAAGA+GGG | - | chr3_1:4909265-4909284 | None:intergenic | 35.0% | |
| CTTCTTCTTCCTTTCAATTC+AGG | + | chr3_1:4909291-4909310 | Msa0345570:intron | 35.0% | |
| GATACTTTATACGGGATACA+CGG | - | chr3_1:4907473-4907492 | None:intergenic | 35.0% | |
| ! | CAGGGTTTTCCTATTTTCTT+TGG | + | chr3_1:4907503-4907522 | Msa0345570:intron | 35.0% |
| !! | AAGAGTTGGTAGTGATGTTA+GGG | - | chr3_1:4907676-4907695 | None:intergenic | 35.0% |
| TTTGTTCCCTTGACAATAGA+GGG | - | chr3_1:4907830-4907849 | None:intergenic | 35.0% | |
| ! | TTTTGTTCCCTTGACAATAG+AGG | - | chr3_1:4907831-4907850 | None:intergenic | 35.0% |
| CATGCTTCAGTGAAGTATAA+GGG | - | chr3_1:4907862-4907881 | None:intergenic | 35.0% | |
| AAATATATCTGCTCTTCCGA+TGG | - | chr3_1:4908249-4908268 | None:intergenic | 35.0% | |
| GAGCAGATATATTTAACCCT+TGG | + | chr3_1:4908255-4908274 | Msa0345570:intron | 35.0% | |
| TTTAACCCTTGGGAAAATCT+AGG | + | chr3_1:4908266-4908285 | Msa0345570:intron | 35.0% | |
| ! | CTTTTTCCTAGATTTTCCCA+AGG | - | chr3_1:4908275-4908294 | None:intergenic | 35.0% |
| ! | TAGAGTACTATTTGACCCTT+TGG | + | chr3_1:4908433-4908452 | Msa0345570:intron | 35.0% |
| ! | AGAGTACTATTTGACCCTTT+GGG | + | chr3_1:4908434-4908453 | Msa0345570:intron | 35.0% |
| ! | TTTTTCCTGGATTTCCCAAA+GGG | - | chr3_1:4908451-4908470 | None:intergenic | 35.0% |
| !!! | TTTTTTCCTGGATTTCCCAA+AGG | - | chr3_1:4908452-4908471 | None:intergenic | 35.0% |
| AAAACTTAGTGTCCATACGT+AGG | + | chr3_1:4908556-4908575 | Msa0345570:intron | 35.0% | |
| AAACTTAGTGTCCATACGTA+GGG | + | chr3_1:4908557-4908576 | Msa0345570:intron | 35.0% | |
| CATTGTTAATTAAAGGCTGG+TGG | + | chr3_1:4908681-4908700 | Msa0345570:intron | 35.0% | |
| !! | GGAGTTTTTGCTATAGGAAT+AGG | + | chr3_1:4908803-4908822 | Msa0345570:intron | 35.0% |
| TGAAGTCGTTCAAATGTGAA+TGG | - | chr3_1:4908845-4908864 | None:intergenic | 35.0% | |
| TTTGAATGCAGCATCCTTTA+GGG | - | chr3_1:4908900-4908919 | None:intergenic | 35.0% | |
| ! | TTTTGAATGCAGCATCCTTT+AGG | - | chr3_1:4908901-4908920 | None:intergenic | 35.0% |
| TTGACACCTATGACTTCTTT+AGG | - | chr3_1:4908948-4908967 | None:intergenic | 35.0% | |
| AGAAGTCATAGGTGTCAATT+TGG | + | chr3_1:4908950-4908969 | Msa0345570:intron | 35.0% | |
| ! | TCAATTTGGTGAACTAGCTA+GGG | + | chr3_1:4908964-4908983 | Msa0345570:intron | 35.0% |
| CAGATTGAGAAAATAGCTCA+AGG | - | chr3_1:4908997-4909016 | None:intergenic | 35.0% | |
| AAAATACCCATGCCACATAA+GGG | - | chr3_1:4909088-4909107 | None:intergenic | 35.0% | |
| AAAAATACCCATGCCACATA+AGG | - | chr3_1:4909089-4909108 | None:intergenic | 35.0% | |
| GAACATGAGAAATTTGTGGT+AGG | - | chr3_1:4909196-4909215 | None:intergenic | 35.0% | |
| GAAGGAACATGAGAAATTTG+TGG | - | chr3_1:4909200-4909219 | None:intergenic | 35.0% | |
| AGAAAAATTGTGGGTTTGGA+AGG | - | chr3_1:4909218-4909237 | None:intergenic | 35.0% | |
| ACGAAGAAAAATTGTGGGTT+TGG | - | chr3_1:4909222-4909241 | None:intergenic | 35.0% | |
| AAGTAGCTTGAAGTTGAAGA+GGG | - | chr3_1:4909265-4909284 | None:intergenic | 35.0% | |
| CTTCTTCTTCCTTTCAATTC+AGG | + | chr3_1:4909291-4909310 | Msa0345570:intron | 35.0% | |
| TGTCGATGAAACAGCAACAT+CGG | - | chr3_1:4907628-4907647 | None:intergenic | 40.0% | |
| !! | TGTTGCTGTTTCATCGACAA+AGG | + | chr3_1:4907629-4907648 | Msa0345570:intron | 40.0% |
| !! | TGATGTTAGGGTTTTGGTAG+TGG | - | chr3_1:4907664-4907683 | None:intergenic | 40.0% |
| !! | TGGTAGTGATGTTAGGGTTT+TGG | - | chr3_1:4907670-4907689 | None:intergenic | 40.0% |
| !! | GAAGAGTTGGTAGTGATGTT+AGG | - | chr3_1:4907677-4907696 | None:intergenic | 40.0% |
| ACAAGTTTCAACGGAAGAGT+TGG | - | chr3_1:4907690-4907709 | None:intergenic | 40.0% | |
| AACTCTTCCGTTGAAACTTG+TGG | + | chr3_1:4907689-4907708 | Msa0345570:intron | 40.0% | |
| ! | AAGTTGAAGGAGTTGGTTCA+CGG | - | chr3_1:4907736-4907755 | None:intergenic | 40.0% |
| CAACTCCTTCAACTTAAACG+CGG | + | chr3_1:4907741-4907760 | Msa0345570:intron | 40.0% | |
| TTGTCAAGGGAACAAAACTC+AGG | + | chr3_1:4907834-4907853 | Msa0345570:intron | 40.0% | |
| CCATGCTTCAGTGAAGTATA+AGG | - | chr3_1:4907863-4907882 | None:intergenic | 40.0% | |
| CCTTATACTTCACTGAAGCA+TGG | + | chr3_1:4907860-4907879 | Msa0345570:intron | 40.0% | |
| ! | CGCTATGTTAGTGAAGTGTT+CGG | + | chr3_1:4907886-4907905 | Msa0345570:intron | 40.0% |
| ! | TTGATAAACGGTTTGCTCTG+TGG | + | chr3_1:4908213-4908232 | Msa0345570:intron | 40.0% |
| ! | AGGGTACTTGTTCTTAGAAG+AGG | + | chr3_1:4908409-4908428 | Msa0345570:intron | 40.0% |
| GGGTACTTGTTCTTAGAAGA+GGG | + | chr3_1:4908410-4908429 | Msa0345570:intron | 40.0% | |
| AACTTAGTGTCCATACGTAG+GGG | + | chr3_1:4908558-4908577 | Msa0345570:intron | 40.0% | |
| ! | GCATCCTTTAGGGGATATAT+AGG | - | chr3_1:4908890-4908909 | None:intergenic | 40.0% |
| TTGAATGCAGCATCCTTTAG+GGG | - | chr3_1:4908899-4908918 | None:intergenic | 40.0% | |
| CTATGACTTCTTTAGGTGGA+GGG | - | chr3_1:4908941-4908960 | None:intergenic | 40.0% | |
| ACACCTATGACTTCTTTAGG+TGG | - | chr3_1:4908945-4908964 | None:intergenic | 40.0% | |
| ! | GTCAATTTGGTGAACTAGCT+AGG | + | chr3_1:4908963-4908982 | Msa0345570:intron | 40.0% |
| AAATACCCATGCCACATAAG+GGG | - | chr3_1:4909087-4909106 | None:intergenic | 40.0% | |
| GAGATCTAAGAGAGAGAAGA+GGG | - | chr3_1:4909140-4909159 | None:intergenic | 40.0% | |
| AGAGTGAGAGGAAGAAGAAA+GGG | - | chr3_1:4909162-4909181 | None:intergenic | 40.0% | |
| GAAGTAGCTTGAAGTTGAAG+AGG | - | chr3_1:4909266-4909285 | None:intergenic | 40.0% | |
| !! | TGATTTCTAGCTGATGCAAC+TGG | + | chr3_1:4909373-4909392 | Msa0345570:intron | 40.0% |
| GTTATTCTCACCCGTTACAA+CGG | + | chr3_1:4909511-4909530 | Msa0345570:CDS | 40.0% | |
| TGCCAATGCTATGTTGTACA+TGG | + | chr3_1:4909555-4909574 | Msa0345570:CDS | 40.0% | |
| TGCCATGTACAACATAGCAT+TGG | - | chr3_1:4909560-4909579 | None:intergenic | 40.0% | |
| TGTCGATGAAACAGCAACAT+CGG | - | chr3_1:4907628-4907647 | None:intergenic | 40.0% | |
| !! | TGTTGCTGTTTCATCGACAA+AGG | + | chr3_1:4907629-4907648 | Msa0345570:intron | 40.0% |
| !! | TGATGTTAGGGTTTTGGTAG+TGG | - | chr3_1:4907664-4907683 | None:intergenic | 40.0% |
| !! | TGGTAGTGATGTTAGGGTTT+TGG | - | chr3_1:4907670-4907689 | None:intergenic | 40.0% |
| !! | GAAGAGTTGGTAGTGATGTT+AGG | - | chr3_1:4907677-4907696 | None:intergenic | 40.0% |
| ACAAGTTTCAACGGAAGAGT+TGG | - | chr3_1:4907690-4907709 | None:intergenic | 40.0% | |
| AACTCTTCCGTTGAAACTTG+TGG | + | chr3_1:4907689-4907708 | Msa0345570:intron | 40.0% | |
| ! | AAGTTGAAGGAGTTGGTTCA+CGG | - | chr3_1:4907736-4907755 | None:intergenic | 40.0% |
| CAACTCCTTCAACTTAAACG+CGG | + | chr3_1:4907741-4907760 | Msa0345570:intron | 40.0% | |
| TTGTCAAGGGAACAAAACTC+AGG | + | chr3_1:4907834-4907853 | Msa0345570:intron | 40.0% | |
| CCATGCTTCAGTGAAGTATA+AGG | - | chr3_1:4907863-4907882 | None:intergenic | 40.0% | |
| CCTTATACTTCACTGAAGCA+TGG | + | chr3_1:4907860-4907879 | Msa0345570:intron | 40.0% | |
| ! | CGCTATGTTAGTGAAGTGTT+CGG | + | chr3_1:4907886-4907905 | Msa0345570:intron | 40.0% |
| ! | TTGATAAACGGTTTGCTCTG+TGG | + | chr3_1:4908213-4908232 | Msa0345570:intron | 40.0% |
| ! | AGGGTACTTGTTCTTAGAAG+AGG | + | chr3_1:4908409-4908428 | Msa0345570:intron | 40.0% |
| GGGTACTTGTTCTTAGAAGA+GGG | + | chr3_1:4908410-4908429 | Msa0345570:intron | 40.0% | |
| AACTTAGTGTCCATACGTAG+GGG | + | chr3_1:4908558-4908577 | Msa0345570:intron | 40.0% | |
| ! | GCATCCTTTAGGGGATATAT+AGG | - | chr3_1:4908890-4908909 | None:intergenic | 40.0% |
| TTGAATGCAGCATCCTTTAG+GGG | - | chr3_1:4908899-4908918 | None:intergenic | 40.0% | |
| CTATGACTTCTTTAGGTGGA+GGG | - | chr3_1:4908941-4908960 | None:intergenic | 40.0% | |
| ACACCTATGACTTCTTTAGG+TGG | - | chr3_1:4908945-4908964 | None:intergenic | 40.0% | |
| ! | GTCAATTTGGTGAACTAGCT+AGG | + | chr3_1:4908963-4908982 | Msa0345570:intron | 40.0% |
| AAATACCCATGCCACATAAG+GGG | - | chr3_1:4909087-4909106 | None:intergenic | 40.0% | |
| GAGATCTAAGAGAGAGAAGA+GGG | - | chr3_1:4909140-4909159 | None:intergenic | 40.0% | |
| AGAGTGAGAGGAAGAAGAAA+GGG | - | chr3_1:4909162-4909181 | None:intergenic | 40.0% | |
| GAAGTAGCTTGAAGTTGAAG+AGG | - | chr3_1:4909266-4909285 | None:intergenic | 40.0% | |
| !! | TGATTTCTAGCTGATGCAAC+TGG | + | chr3_1:4909373-4909392 | Msa0345570:intron | 40.0% |
| GTTATTCTCACCCGTTACAA+CGG | + | chr3_1:4909511-4909530 | Msa0345570:CDS | 40.0% | |
| TGCCAATGCTATGTTGTACA+TGG | + | chr3_1:4909555-4909574 | Msa0345570:CDS | 40.0% | |
| TGCCATGTACAACATAGCAT+TGG | - | chr3_1:4909560-4909579 | None:intergenic | 40.0% | |
| ACGGGATACACGGTTAACTT+GGG | - | chr3_1:4907463-4907482 | None:intergenic | 45.0% | |
| TACGGGATACACGGTTAACT+TGG | - | chr3_1:4907464-4907483 | None:intergenic | 45.0% | |
| ! | CGCTCTAAACATTCAGAACG+AGG | + | chr3_1:4907582-4907601 | Msa0345570:intron | 45.0% |
| ACATTCAGAACGAGGTAGCA+TGG | + | chr3_1:4907590-4907609 | Msa0345570:intron | 45.0% | |
| CATTCAGAACGAGGTAGCAT+GGG | + | chr3_1:4907591-4907610 | Msa0345570:intron | 45.0% | |
| !! | TGCTGTTTCATCGACAAAGG+AGG | + | chr3_1:4907632-4907651 | Msa0345570:intron | 45.0% |
| !!! | TGTTAGGGTTTTGGTAGTGG+TGG | - | chr3_1:4907661-4907680 | None:intergenic | 45.0% |
| ! | AGTTGAAGGAGTTGGTTCAC+GGG | - | chr3_1:4907735-4907754 | None:intergenic | 45.0% |
| !! | CGCGTTTAAGTTGAAGGAGT+TGG | - | chr3_1:4907743-4907762 | None:intergenic | 45.0% |
| !! | TGCATCCGCGTTTAAGTTGA+AGG | - | chr3_1:4907749-4907768 | None:intergenic | 45.0% |
| TTAAACGCGGATGCAAGTCA+TGG | + | chr3_1:4907754-4907773 | Msa0345570:intron | 45.0% | |
| GCAGTTGAGAATGTGCTTCT+TGG | - | chr3_1:4907808-4907827 | None:intergenic | 45.0% | |
| TCAACTGCCCTCTATTGTCA+AGG | + | chr3_1:4907820-4907839 | Msa0345570:intron | 45.0% | |
| CAACTGCCCTCTATTGTCAA+GGG | + | chr3_1:4907821-4907840 | Msa0345570:intron | 45.0% | |
| ! | ATAAACGGTTTGCTCTGTGG+TGG | + | chr3_1:4908216-4908235 | Msa0345570:intron | 45.0% |
| TATCTGCTCTTCCGATGGAA+GGG | - | chr3_1:4908244-4908263 | None:intergenic | 45.0% | |
| ATATCTGCTCTTCCGATGGA+AGG | - | chr3_1:4908245-4908264 | None:intergenic | 45.0% | |
| ! | TTTGACCCTTTGGGAAATCC+AGG | + | chr3_1:4908443-4908462 | Msa0345570:intron | 45.0% |
| AAAGACTTGCATATGGGAGC+AGG | + | chr3_1:4908781-4908800 | Msa0345570:intron | 45.0% | |
| AAGACTTGCATATGGGAGCA+GGG | + | chr3_1:4908782-4908801 | Msa0345570:intron | 45.0% | |
| !! | GAGCAGGGAGTTTTTGCTAT+AGG | + | chr3_1:4908797-4908816 | Msa0345570:intron | 45.0% |
| CCTATGACTTCTTTAGGTGG+AGG | - | chr3_1:4908942-4908961 | None:intergenic | 45.0% | |
| CCTCCACCTAAAGAAGTCAT+AGG | + | chr3_1:4908939-4908958 | Msa0345570:intron | 45.0% | |
| TGGAAGAGTGGTATGGAGAA+GGG | - | chr3_1:4909060-4909079 | None:intergenic | 45.0% | |
| ATGGAAGAGTGGTATGGAGA+AGG | - | chr3_1:4909061-4909080 | None:intergenic | 45.0% | |
| ! | ATAAGGGGTGTATGGAAGAG+TGG | - | chr3_1:4909072-4909091 | None:intergenic | 45.0% |
| TCTTCCATACACCCCTTATG+TGG | + | chr3_1:4909073-4909092 | Msa0345570:intron | 45.0% | |
| ATACACCCCTTATGTGGCAT+GGG | + | chr3_1:4909079-4909098 | Msa0345570:intron | 45.0% | |
| GGAGATCTAAGAGAGAGAAG+AGG | - | chr3_1:4909141-4909160 | None:intergenic | 45.0% | |
| CAGAGTGAGAGGAAGAAGAA+AGG | - | chr3_1:4909163-4909182 | None:intergenic | 45.0% | |
| AATTTGTGGTAGGGAGTGAG+AGG | - | chr3_1:4909186-4909205 | None:intergenic | 45.0% | |
| GGTGGTGTACCTGAATTGAA+AGG | - | chr3_1:4909303-4909322 | None:intergenic | 45.0% | |
| ATTGGCAAACCTGTCATTGG+AGG | - | chr3_1:4909542-4909561 | None:intergenic | 45.0% | |
| !! | AGCATTGGCAAACCTGTCAT+TGG | - | chr3_1:4909545-4909564 | None:intergenic | 45.0% |
| TGCTATGTTGTACATGGCAG+AGG | + | chr3_1:4909561-4909580 | Msa0345570:CDS | 45.0% | |
| TATGTTGTACATGGCAGAGG+AGG | + | chr3_1:4909564-4909583 | Msa0345570:CDS | 45.0% | |
| CCAATTCCTGCATTTGCTTG+AGG | - | chr3_1:4909612-4909631 | None:intergenic | 45.0% | |
| CCTCAAGCAAATGCAGGAAT+TGG | + | chr3_1:4909609-4909628 | Msa0345570:CDS | 45.0% | |
| ACGGGATACACGGTTAACTT+GGG | - | chr3_1:4907463-4907482 | None:intergenic | 45.0% | |
| TACGGGATACACGGTTAACT+TGG | - | chr3_1:4907464-4907483 | None:intergenic | 45.0% | |
| ! | CGCTCTAAACATTCAGAACG+AGG | + | chr3_1:4907582-4907601 | Msa0345570:intron | 45.0% |
| ACATTCAGAACGAGGTAGCA+TGG | + | chr3_1:4907590-4907609 | Msa0345570:intron | 45.0% | |
| CATTCAGAACGAGGTAGCAT+GGG | + | chr3_1:4907591-4907610 | Msa0345570:intron | 45.0% | |
| !! | TGCTGTTTCATCGACAAAGG+AGG | + | chr3_1:4907632-4907651 | Msa0345570:intron | 45.0% |
| !!! | TGTTAGGGTTTTGGTAGTGG+TGG | - | chr3_1:4907661-4907680 | None:intergenic | 45.0% |
| ! | AGTTGAAGGAGTTGGTTCAC+GGG | - | chr3_1:4907735-4907754 | None:intergenic | 45.0% |
| !! | CGCGTTTAAGTTGAAGGAGT+TGG | - | chr3_1:4907743-4907762 | None:intergenic | 45.0% |
| !! | TGCATCCGCGTTTAAGTTGA+AGG | - | chr3_1:4907749-4907768 | None:intergenic | 45.0% |
| TTAAACGCGGATGCAAGTCA+TGG | + | chr3_1:4907754-4907773 | Msa0345570:intron | 45.0% | |
| GCAGTTGAGAATGTGCTTCT+TGG | - | chr3_1:4907808-4907827 | None:intergenic | 45.0% | |
| TCAACTGCCCTCTATTGTCA+AGG | + | chr3_1:4907820-4907839 | Msa0345570:intron | 45.0% | |
| CAACTGCCCTCTATTGTCAA+GGG | + | chr3_1:4907821-4907840 | Msa0345570:intron | 45.0% | |
| ! | ATAAACGGTTTGCTCTGTGG+TGG | + | chr3_1:4908216-4908235 | Msa0345570:intron | 45.0% |
| TATCTGCTCTTCCGATGGAA+GGG | - | chr3_1:4908244-4908263 | None:intergenic | 45.0% | |
| ATATCTGCTCTTCCGATGGA+AGG | - | chr3_1:4908245-4908264 | None:intergenic | 45.0% | |
| ! | TTTGACCCTTTGGGAAATCC+AGG | + | chr3_1:4908443-4908462 | Msa0345570:intron | 45.0% |
| AAAGACTTGCATATGGGAGC+AGG | + | chr3_1:4908781-4908800 | Msa0345570:intron | 45.0% | |
| AAGACTTGCATATGGGAGCA+GGG | + | chr3_1:4908782-4908801 | Msa0345570:intron | 45.0% | |
| !! | GAGCAGGGAGTTTTTGCTAT+AGG | + | chr3_1:4908797-4908816 | Msa0345570:intron | 45.0% |
| CCTATGACTTCTTTAGGTGG+AGG | - | chr3_1:4908942-4908961 | None:intergenic | 45.0% | |
| CCTCCACCTAAAGAAGTCAT+AGG | + | chr3_1:4908939-4908958 | Msa0345570:intron | 45.0% | |
| TGGAAGAGTGGTATGGAGAA+GGG | - | chr3_1:4909060-4909079 | None:intergenic | 45.0% | |
| ATGGAAGAGTGGTATGGAGA+AGG | - | chr3_1:4909061-4909080 | None:intergenic | 45.0% | |
| ! | ATAAGGGGTGTATGGAAGAG+TGG | - | chr3_1:4909072-4909091 | None:intergenic | 45.0% |
| TCTTCCATACACCCCTTATG+TGG | + | chr3_1:4909073-4909092 | Msa0345570:intron | 45.0% | |
| ATACACCCCTTATGTGGCAT+GGG | + | chr3_1:4909079-4909098 | Msa0345570:intron | 45.0% | |
| GGAGATCTAAGAGAGAGAAG+AGG | - | chr3_1:4909141-4909160 | None:intergenic | 45.0% | |
| CAGAGTGAGAGGAAGAAGAA+AGG | - | chr3_1:4909163-4909182 | None:intergenic | 45.0% | |
| AATTTGTGGTAGGGAGTGAG+AGG | - | chr3_1:4909186-4909205 | None:intergenic | 45.0% | |
| GGTGGTGTACCTGAATTGAA+AGG | - | chr3_1:4909303-4909322 | None:intergenic | 45.0% | |
| ATTGGCAAACCTGTCATTGG+AGG | - | chr3_1:4909542-4909561 | None:intergenic | 45.0% | |
| !! | AGCATTGGCAAACCTGTCAT+TGG | - | chr3_1:4909545-4909564 | None:intergenic | 45.0% |
| TGCTATGTTGTACATGGCAG+AGG | + | chr3_1:4909561-4909580 | Msa0345570:CDS | 45.0% | |
| TATGTTGTACATGGCAGAGG+AGG | + | chr3_1:4909564-4909583 | Msa0345570:CDS | 45.0% | |
| CCAATTCCTGCATTTGCTTG+AGG | - | chr3_1:4909612-4909631 | None:intergenic | 45.0% | |
| CCTCAAGCAAATGCAGGAAT+TGG | + | chr3_1:4909609-4909628 | Msa0345570:CDS | 45.0% | |
| ! | CGGGATACACGGTTAACTTG+GGG | - | chr3_1:4907462-4907481 | None:intergenic | 50.0% |
| AAACAGCAACATCGGATCCC+CGG | - | chr3_1:4907620-4907639 | None:intergenic | 50.0% | |
| CATTGCATAGCCCCTACGTA+TGG | - | chr3_1:4908571-4908590 | None:intergenic | 50.0% | |
| TTAGGTGGAGGGTGAAGATG+AGG | - | chr3_1:4908930-4908949 | None:intergenic | 50.0% | |
| GGGTGTATGGAAGAGTGGTA+TGG | - | chr3_1:4909067-4909086 | None:intergenic | 50.0% | |
| ! | CATGCCACATAAGGGGTGTA+TGG | - | chr3_1:4909080-4909099 | None:intergenic | 50.0% |
| CATACACCCCTTATGTGGCA+TGG | + | chr3_1:4909078-4909097 | Msa0345570:intron | 50.0% | |
| GAAGAGGGCGAAGAAAGTTG+TGG | - | chr3_1:4909250-4909269 | None:intergenic | 50.0% | |
| CTTTCGCTACAACTACGCTC+AGG | - | chr3_1:4909466-4909485 | None:intergenic | 50.0% | |
| !! | AGTTGTAGCGAAAGAGCACC+TGG | + | chr3_1:4909472-4909491 | Msa0345570:CDS | 50.0% |
| !! | GTTGTAGCGAAAGAGCACCT+GGG | + | chr3_1:4909473-4909492 | Msa0345570:CDS | 50.0% |
| TGGAGGCAATGCCGTTGTAA+CGG | - | chr3_1:4909525-4909544 | None:intergenic | 50.0% | |
| TGAGGTCCTCAAGCAAATGC+AGG | + | chr3_1:4909603-4909622 | Msa0345570:CDS | 50.0% | |
| ! | CGGGATACACGGTTAACTTG+GGG | - | chr3_1:4907462-4907481 | None:intergenic | 50.0% |
| AAACAGCAACATCGGATCCC+CGG | - | chr3_1:4907620-4907639 | None:intergenic | 50.0% | |
| CATTGCATAGCCCCTACGTA+TGG | - | chr3_1:4908571-4908590 | None:intergenic | 50.0% | |
| TTAGGTGGAGGGTGAAGATG+AGG | - | chr3_1:4908930-4908949 | None:intergenic | 50.0% | |
| GGGTGTATGGAAGAGTGGTA+TGG | - | chr3_1:4909067-4909086 | None:intergenic | 50.0% | |
| ! | CATGCCACATAAGGGGTGTA+TGG | - | chr3_1:4909080-4909099 | None:intergenic | 50.0% |
| CATACACCCCTTATGTGGCA+TGG | + | chr3_1:4909078-4909097 | Msa0345570:intron | 50.0% | |
| GAAGAGGGCGAAGAAAGTTG+TGG | - | chr3_1:4909250-4909269 | None:intergenic | 50.0% | |
| CTTTCGCTACAACTACGCTC+AGG | - | chr3_1:4909466-4909485 | None:intergenic | 50.0% | |
| !! | AGTTGTAGCGAAAGAGCACC+TGG | + | chr3_1:4909472-4909491 | Msa0345570:CDS | 50.0% |
| !! | GTTGTAGCGAAAGAGCACCT+GGG | + | chr3_1:4909473-4909492 | Msa0345570:CDS | 50.0% |
| TGGAGGCAATGCCGTTGTAA+CGG | - | chr3_1:4909525-4909544 | None:intergenic | 50.0% | |
| TGAGGTCCTCAAGCAAATGC+AGG | + | chr3_1:4909603-4909622 | Msa0345570:CDS | 50.0% | |
| AACGAGGTAGCATGGGCAAC+CGG | + | chr3_1:4907598-4907617 | Msa0345570:intron | 55.0% | |
| GGTTCACGGGTAGTCTAAGC+AGG | - | chr3_1:4907722-4907741 | None:intergenic | 55.0% | |
| ! | CTGTGGTGGAACCCTTCCAT+CGG | + | chr3_1:4908230-4908249 | Msa0345570:intron | 55.0% |
| GGGTGAGAATAACGCGTGCT+TGG | - | chr3_1:4909504-4909523 | None:intergenic | 55.0% | |
| GGAGGCAATGCCGTTGTAAC+GGG | - | chr3_1:4909524-4909543 | None:intergenic | 55.0% | |
| ACGGCATTGCCTCCAATGAC+AGG | + | chr3_1:4909530-4909549 | Msa0345570:CDS | 55.0% | |
| ! | GGTTGCTTCTAGCTGTGCTG+AGG | + | chr3_1:4909585-4909604 | Msa0345570:CDS | 55.0% |
| AACGAGGTAGCATGGGCAAC+CGG | + | chr3_1:4907598-4907617 | Msa0345570:intron | 55.0% | |
| GGTTCACGGGTAGTCTAAGC+AGG | - | chr3_1:4907722-4907741 | None:intergenic | 55.0% | |
| ! | CTGTGGTGGAACCCTTCCAT+CGG | + | chr3_1:4908230-4908249 | Msa0345570:intron | 55.0% |
| GGGTGAGAATAACGCGTGCT+TGG | - | chr3_1:4909504-4909523 | None:intergenic | 55.0% | |
| GGAGGCAATGCCGTTGTAAC+GGG | - | chr3_1:4909524-4909543 | None:intergenic | 55.0% | |
| ACGGCATTGCCTCCAATGAC+AGG | + | chr3_1:4909530-4909549 | Msa0345570:CDS | 55.0% | |
| ! | GGTTGCTTCTAGCTGTGCTG+AGG | + | chr3_1:4909585-4909604 | Msa0345570:CDS | 55.0% |
| ACGAGGTAGCATGGGCAACC+GGG | + | chr3_1:4907599-4907618 | Msa0345570:intron | 60.0% | |
| GGAGTGAGAGGCAGAGTGAG+AGG | - | chr3_1:4909174-4909193 | None:intergenic | 60.0% | |
| ACGAGGTAGCATGGGCAACC+GGG | + | chr3_1:4907599-4907618 | Msa0345570:intron | 60.0% | |
| GGAGTGAGAGGCAGAGTGAG+AGG | - | chr3_1:4909174-4909193 | None:intergenic | 60.0% | |
| CGAGGTAGCATGGGCAACCG+GGG | + | chr3_1:4907600-4907619 | Msa0345570:intron | 65.0% | |
| CGAGGTAGCATGGGCAACCG+GGG | + | chr3_1:4907600-4907619 | Msa0345570:intron | 65.0% | |
| ACGCGTGCTTGGTCACGCCC+AGG | - | chr3_1:4909493-4909512 | None:intergenic | 70.0% | |
| ACGCGTGCTTGGTCACGCCC+AGG | - | chr3_1:4909493-4909512 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 4907378 | 4909645 | 4907378 | ID=Msa0345570;Name=Msa0345570 |
| chr3_1 | mRNA | 4907378 | 4909645 | 4907378 | ID=Msa0345570-mRNA-1;Parent=Msa0345570;Name=Msa0345570-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0|0|0|0.5|1|1|2|0|88 |
| chr3_1 | exon | 4907378 | 4907381 | 4907378 | ID=Msa0345570-mRNA-1:exon:1541;Parent=Msa0345570-mRNA-1 |
| chr3_1 | exon | 4909383 | 4909645 | 4909383 | ID=Msa0345570-mRNA-1:exon:1542;Parent=Msa0345570-mRNA-1 |
| chr3_1 | CDS | 4907378 | 4907381 | 4907378 | ID=Msa0345570-mRNA-1:cds;Parent=Msa0345570-mRNA-1 |
| chr3_1 | CDS | 4909383 | 4909645 | 4909383 | ID=Msa0345570-mRNA-1:cds;Parent=Msa0345570-mRNA-1 |
| Gene Sequence |
| Protein sequence |
