Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0391880 | XP_013460852.1 | 90.698 | 86 | 8 | 0 | 3 | 88 | 77 | 162 | 2.21e-50 | 166 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0391880 | sp|Q9LX15|DFC_ARATH | 42.667 | 75 | 43 | 0 | 6 | 80 | 80 | 154 | 4.89e-13 | 63.5 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0391880 | B7FN25 | 90.698 | 86 | 8 | 0 | 3 | 88 | 77 | 162 | 1.06e-50 | 166 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0391720 | Msa0391880 | 0.955595 | 2.111489e-113 | -8.615850e-47 |
| Msa0391780 | Msa0391880 | 0.947316 | 8.531803e-106 | -8.615850e-47 |
| Msa0391840 | Msa0391880 | 0.941331 | 5.012274e-101 | -8.615850e-47 |
| Msa0391880 | Msa0711830 | 0.803939 | 2.743276e-49 | -8.615850e-47 |
| Msa0391880 | Msa0954920 | 0.816734 | 4.747177e-52 | -8.615850e-47 |
| Msa0345570 | Msa0391880 | 0.926152 | 6.939594e-91 | -8.615850e-47 |
| Msa0346460 | Msa0391880 | 0.936448 | 1.708220e-97 | -8.615850e-47 |
| Msa0346560 | Msa0391880 | 0.900912 | 4.555190e-78 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0391880 | MtrunA17_Chr3g0115561 | 90.698 | 86 | 8 | 0 | 3 | 88 | 77 | 162 | 2.03e-54 | 166 |
| Msa0391880 | MtrunA17_Chr3g0124301 | 35.802 | 81 | 50 | 2 | 1 | 79 | 72 | 152 | 2.13e-14 | 64.3 |
| Msa0391880 | MtrunA17_Chr2g0283801 | 37.349 | 83 | 49 | 1 | 2 | 81 | 75 | 157 | 1.27e-12 | 59.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0391880 | AT4G08685.1 | 44.048 | 84 | 47 | 0 | 3 | 86 | 76 | 159 | 1.71e-22 | 85.5 |
| Msa0391880 | AT1G78040.1 | 40.230 | 87 | 51 | 1 | 1 | 87 | 78 | 163 | 1.60e-15 | 67.8 |
| Msa0391880 | AT1G78040.3 | 40.230 | 87 | 51 | 1 | 1 | 87 | 78 | 163 | 1.60e-15 | 67.8 |
| Msa0391880 | AT1G78040.2 | 40.230 | 87 | 51 | 1 | 1 | 87 | 78 | 163 | 1.60e-15 | 67.8 |
| Msa0391880 | AT5G10130.1 | 42.667 | 75 | 43 | 0 | 6 | 80 | 80 | 154 | 4.97e-14 | 63.5 |
Find 22 sgRNAs with CRISPR-Local
Find 352 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGATTTCTAGCTGATGCAAC+TGG | 0.377402 | 3_2:+4779532 | Msa0391880:intron |
| CCTCAAGCAAATGCAGGAAT+TGG | 0.399028 | 3_2:+4779768 | Msa0391880:CDS |
| GGAGGCAATGCCGTTGTAAC+GGG | 0.439821 | 3_2:-4779680 | None:intergenic |
| AGTTGTAGCGAAAGAGCACC+TGG | 0.442879 | 3_2:+4779631 | Msa0391880:CDS |
| ATATACAATGTATGTGGATC+AGG | 0.452269 | 3_2:+4779558 | Msa0391880:CDS |
| AGCATTGGCAAACCTGTCAT+TGG | 0.466304 | 3_2:-4779701 | None:intergenic |
| CCAATTCCTGCATTTGCTTG+AGG | 0.488555 | 3_2:-4779768 | None:intergenic |
| TGGAGGCAATGCCGTTGTAA+CGG | 0.522858 | 3_2:-4779681 | None:intergenic |
| GGGTGAGAATAACGCGTGCT+TGG | 0.527810 | 3_2:-4779660 | None:intergenic |
| ACGGCATTGCCTCCAATGAC+AGG | 0.539090 | 3_2:+4779689 | Msa0391880:CDS |
| TGCTATGTTGTACATGGCAG+AGG | 0.540527 | 3_2:+4779720 | Msa0391880:CDS |
| TGCCAATGCTATGTTGTACA+TGG | 0.550672 | 3_2:+4779714 | Msa0391880:CDS |
| TGGAGAATATACAATGTATG+TGG | 0.553534 | 3_2:+4779552 | Msa0391880:CDS |
| ACGCGTGCTTGGTCACGCCC+AGG | 0.556503 | 3_2:-4779649 | None:intergenic |
| ATTGGCAAACCTGTCATTGG+AGG | 0.565263 | 3_2:-4779698 | None:intergenic |
| TGCCATGTACAACATAGCAT+TGG | 0.582518 | 3_2:-4779716 | None:intergenic |
| GTTATTCTCACCCGTTACAA+CGG | 0.584831 | 3_2:+4779670 | Msa0391880:CDS |
| TGAGGTCCTCAAGCAAATGC+AGG | 0.587649 | 3_2:+4779762 | Msa0391880:CDS |
| GGTTGCTTCTAGCTGTGCTG+AGG | 0.620393 | 3_2:+4779744 | Msa0391880:CDS |
| CTTTCGCTACAACTACGCTC+AGG | 0.623193 | 3_2:-4779622 | None:intergenic |
| TATGTTGTACATGGCAGAGG+AGG | 0.691786 | 3_2:+4779723 | Msa0391880:CDS |
| GTTGTAGCGAAAGAGCACCT+GGG | 0.714138 | 3_2:+4779632 | Msa0391880:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CTAAATTATGTAAAAATAAA+CGG | - | chr3_2:4778075-4778094 | None:intergenic | 10.0% |
| !! | TTGTTATAAAAAACAATAAA+GGG | - | chr3_2:4779486-4779505 | None:intergenic | 10.0% |
| !! | AATAAAGAATAAAAATGAAA+GGG | - | chr3_2:4779509-4779528 | None:intergenic | 10.0% |
| !! | AAATAAAGAATAAAAATGAA+AGG | - | chr3_2:4779510-4779529 | None:intergenic | 10.0% |
| !! | CTAAATTATGTAAAAATAAA+CGG | - | chr3_2:4778075-4778094 | None:intergenic | 10.0% |
| !! | TTGTTATAAAAAACAATAAA+GGG | - | chr3_2:4779486-4779505 | None:intergenic | 10.0% |
| !! | AATAAAGAATAAAAATGAAA+GGG | - | chr3_2:4779509-4779528 | None:intergenic | 10.0% |
| !! | AAATAAAGAATAAAAATGAA+AGG | - | chr3_2:4779510-4779529 | None:intergenic | 10.0% |
| !! | AACAATAATAAAACCTAATT+TGG | - | chr3_2:4777690-4777709 | None:intergenic | 15.0% |
| !!! | TTATTGTTATTATTGTATCA+AGG | + | chr3_2:4777702-4777721 | Msa0391880:intron | 15.0% |
| !! | TTAATGCAGTTATTTATTTA+TGG | + | chr3_2:4779176-4779195 | Msa0391880:intron | 15.0% |
| !! | ATTTATTTATGGAAAAAGAT+TGG | + | chr3_2:4779187-4779206 | Msa0391880:intron | 15.0% |
| !! | GTTGTTATAAAAAACAATAA+AGG | - | chr3_2:4779487-4779506 | None:intergenic | 15.0% |
| !! | AACAATAATAAAACCTAATT+TGG | - | chr3_2:4777690-4777709 | None:intergenic | 15.0% |
| !!! | TTATTGTTATTATTGTATCA+AGG | + | chr3_2:4777702-4777721 | Msa0391880:intron | 15.0% |
| !! | TTAATGCAGTTATTTATTTA+TGG | + | chr3_2:4779176-4779195 | Msa0391880:intron | 15.0% |
| !! | ATTTATTTATGGAAAAAGAT+TGG | + | chr3_2:4779187-4779206 | Msa0391880:intron | 15.0% |
| !! | GTTGTTATAAAAAACAATAA+AGG | - | chr3_2:4779487-4779506 | None:intergenic | 15.0% |
| !!! | GTTTTTTAAAAGAGGATAAA+CGG | - | chr3_2:4777566-4777585 | None:intergenic | 20.0% |
| !! | TTATATAGGGATACTTTATA+CGG | - | chr3_2:4777641-4777660 | None:intergenic | 20.0% |
| !!! | AATGTTTCAGTATTGATAAA+CGG | + | chr3_2:4778360-4778379 | Msa0391880:intron | 20.0% |
| !! | TAATGAAAAAATCATATCCT+AGG | - | chr3_2:4778482-4778501 | None:intergenic | 20.0% |
| !! | TTATAAAAAACAATAAAGGG+TGG | - | chr3_2:4779483-4779502 | None:intergenic | 20.0% |
| !!! | GTTTTTTAAAAGAGGATAAA+CGG | - | chr3_2:4777566-4777585 | None:intergenic | 20.0% |
| !! | TTATATAGGGATACTTTATA+CGG | - | chr3_2:4777641-4777660 | None:intergenic | 20.0% |
| !!! | AATGTTTCAGTATTGATAAA+CGG | + | chr3_2:4778360-4778379 | Msa0391880:intron | 20.0% |
| !! | TAATGAAAAAATCATATCCT+AGG | - | chr3_2:4778482-4778501 | None:intergenic | 20.0% |
| !! | TTATAAAAAACAATAAAGGG+TGG | - | chr3_2:4779483-4779502 | None:intergenic | 20.0% |
| ! | TATATAGGGATACTTTATAC+GGG | - | chr3_2:4777640-4777659 | None:intergenic | 25.0% |
| !! | TAAAGTATCCCTATATAATC+AGG | + | chr3_2:4777643-4777662 | Msa0391880:intron | 25.0% |
| !! | AAAGTATCCCTATATAATCA+GGG | + | chr3_2:4777644-4777663 | Msa0391880:intron | 25.0% |
| !! | AATTTGGTTCCAAAGAAAAT+AGG | - | chr3_2:4777674-4777693 | None:intergenic | 25.0% |
| !!! | ATTTTCTTTGGAACCAAATT+AGG | + | chr3_2:4777674-4777693 | Msa0391880:intron | 25.0% |
| ! | TTTAGTTGCAGTGAAATTTA+TGG | + | chr3_2:4778090-4778109 | Msa0391880:intron | 25.0% |
| ! | GTTTATCAATACTGAAACAT+TGG | - | chr3_2:4778361-4778380 | None:intergenic | 25.0% |
| ! | AGAAGTTAGTGTTCATATTT+AGG | + | chr3_2:4778548-4778567 | Msa0391880:intron | 25.0% |
| ! | GAAGTTAGTGTTCATATTTA+GGG | + | chr3_2:4778549-4778568 | Msa0391880:intron | 25.0% |
| ! | CATGGATCATTGTTAATTAA+AGG | + | chr3_2:4778833-4778852 | Msa0391880:intron | 25.0% |
| !! | TAGTTTGTAGAAAATGGAAA+AGG | + | chr3_2:4778899-4778918 | Msa0391880:intron | 25.0% |
| ! | AGTTTGTAGAAAATGGAAAA+GGG | + | chr3_2:4778900-4778919 | Msa0391880:intron | 25.0% |
| ! | TAGGAATAGGAATAACTTTA+CGG | + | chr3_2:4778975-4778994 | Msa0391880:intron | 25.0% |
| ! | TGATTACGAAGAAAAATTGT+GGG | - | chr3_2:4779386-4779405 | None:intergenic | 25.0% |
| ! | TATATAGGGATACTTTATAC+GGG | - | chr3_2:4777640-4777659 | None:intergenic | 25.0% |
| !! | TAAAGTATCCCTATATAATC+AGG | + | chr3_2:4777643-4777662 | Msa0391880:intron | 25.0% |
| !! | AAAGTATCCCTATATAATCA+GGG | + | chr3_2:4777644-4777663 | Msa0391880:intron | 25.0% |
| !! | AATTTGGTTCCAAAGAAAAT+AGG | - | chr3_2:4777674-4777693 | None:intergenic | 25.0% |
| !!! | ATTTTCTTTGGAACCAAATT+AGG | + | chr3_2:4777674-4777693 | Msa0391880:intron | 25.0% |
| ! | TTTAGTTGCAGTGAAATTTA+TGG | + | chr3_2:4778090-4778109 | Msa0391880:intron | 25.0% |
| ! | GTTTATCAATACTGAAACAT+TGG | - | chr3_2:4778361-4778380 | None:intergenic | 25.0% |
| ! | AGAAGTTAGTGTTCATATTT+AGG | + | chr3_2:4778548-4778567 | Msa0391880:intron | 25.0% |
| ! | GAAGTTAGTGTTCATATTTA+GGG | + | chr3_2:4778549-4778568 | Msa0391880:intron | 25.0% |
| ! | CATGGATCATTGTTAATTAA+AGG | + | chr3_2:4778833-4778852 | Msa0391880:intron | 25.0% |
| !! | TAGTTTGTAGAAAATGGAAA+AGG | + | chr3_2:4778899-4778918 | Msa0391880:intron | 25.0% |
| ! | AGTTTGTAGAAAATGGAAAA+GGG | + | chr3_2:4778900-4778919 | Msa0391880:intron | 25.0% |
| ! | TAGGAATAGGAATAACTTTA+CGG | + | chr3_2:4778975-4778994 | Msa0391880:intron | 25.0% |
| ! | TGATTACGAAGAAAAATTGT+GGG | - | chr3_2:4779386-4779405 | None:intergenic | 25.0% |
| !!! | ATACGCACGTTTTTTAAAAG+AGG | - | chr3_2:4777574-4777593 | None:intergenic | 30.0% |
| AGGAAAACCCTGATTATATA+GGG | - | chr3_2:4777654-4777673 | None:intergenic | 30.0% | |
| TAGGAAAACCCTGATTATAT+AGG | - | chr3_2:4777655-4777674 | None:intergenic | 30.0% | |
| ATTTCTTCCACAAGTTTCAA+CGG | - | chr3_2:4777858-4777877 | None:intergenic | 30.0% | |
| CAATCAAATCGTAAGTGTAT+AGG | - | chr3_2:4778316-4778335 | None:intergenic | 30.0% | |
| AGCAGATATATTTAACCCTT+GGG | + | chr3_2:4778415-4778434 | Msa0391880:intron | 30.0% | |
| ! | TTTTTCCTAGATTTTCCCAA+GGG | - | chr3_2:4778433-4778452 | None:intergenic | 30.0% |
| GTTACTTACATATATAGCCT+AGG | + | chr3_2:4778462-4778481 | Msa0391880:intron | 30.0% | |
| !!! | TGATAGGTAACTTTTTTTCC+TGG | - | chr3_2:4778623-4778642 | None:intergenic | 30.0% |
| AAAGTTACCTATCATAGCTT+TGG | + | chr3_2:4778629-4778648 | Msa0391880:intron | 30.0% | |
| ATCATATCCAAAGCTATGAT+AGG | - | chr3_2:4778639-4778658 | None:intergenic | 30.0% | |
| TTTGATTACTGATGACTTCA+TGG | + | chr3_2:4778815-4778834 | Msa0391880:intron | 30.0% | |
| GATCATTGTTAATTAAAGGC+TGG | + | chr3_2:4778837-4778856 | Msa0391880:intron | 30.0% | |
| ! | TTGCACTAGTTTGTAGAAAA+TGG | + | chr3_2:4778893-4778912 | Msa0391880:intron | 30.0% |
| TACAACTAAAGACTTGCATA+TGG | + | chr3_2:4778933-4778952 | Msa0391880:intron | 30.0% | |
| ACAACTAAAGACTTGCATAT+GGG | + | chr3_2:4778934-4778953 | Msa0391880:intron | 30.0% | |
| TAAACCTATATATCCCCTAA+AGG | + | chr3_2:4779042-4779061 | Msa0391880:intron | 30.0% | |
| AGATTGAGAAAATAGCTCAA+GGG | - | chr3_2:4779155-4779174 | None:intergenic | 30.0% | |
| AACATGAGAAATTTGTGGTA+GGG | - | chr3_2:4779354-4779373 | None:intergenic | 30.0% | |
| GTGATTACGAAGAAAAATTG+TGG | - | chr3_2:4779387-4779406 | None:intergenic | 30.0% | |
| TAAAAAACAATAAAGGGTGG+TGG | - | chr3_2:4779480-4779499 | None:intergenic | 30.0% | |
| TGGAGAATATACAATGTATG+TGG | + | chr3_2:4779552-4779571 | Msa0391880:CDS | 30.0% | |
| ATATACAATGTATGTGGATC+AGG | + | chr3_2:4779558-4779577 | Msa0391880:CDS | 30.0% | |
| !!! | ATACGCACGTTTTTTAAAAG+AGG | - | chr3_2:4777574-4777593 | None:intergenic | 30.0% |
| AGGAAAACCCTGATTATATA+GGG | - | chr3_2:4777654-4777673 | None:intergenic | 30.0% | |
| TAGGAAAACCCTGATTATAT+AGG | - | chr3_2:4777655-4777674 | None:intergenic | 30.0% | |
| ATTTCTTCCACAAGTTTCAA+CGG | - | chr3_2:4777858-4777877 | None:intergenic | 30.0% | |
| CAATCAAATCGTAAGTGTAT+AGG | - | chr3_2:4778316-4778335 | None:intergenic | 30.0% | |
| AGCAGATATATTTAACCCTT+GGG | + | chr3_2:4778415-4778434 | Msa0391880:intron | 30.0% | |
| ! | TTTTTCCTAGATTTTCCCAA+GGG | - | chr3_2:4778433-4778452 | None:intergenic | 30.0% |
| GTTACTTACATATATAGCCT+AGG | + | chr3_2:4778462-4778481 | Msa0391880:intron | 30.0% | |
| !!! | TGATAGGTAACTTTTTTTCC+TGG | - | chr3_2:4778623-4778642 | None:intergenic | 30.0% |
| AAAGTTACCTATCATAGCTT+TGG | + | chr3_2:4778629-4778648 | Msa0391880:intron | 30.0% | |
| ATCATATCCAAAGCTATGAT+AGG | - | chr3_2:4778639-4778658 | None:intergenic | 30.0% | |
| TTTGATTACTGATGACTTCA+TGG | + | chr3_2:4778815-4778834 | Msa0391880:intron | 30.0% | |
| GATCATTGTTAATTAAAGGC+TGG | + | chr3_2:4778837-4778856 | Msa0391880:intron | 30.0% | |
| ! | TTGCACTAGTTTGTAGAAAA+TGG | + | chr3_2:4778893-4778912 | Msa0391880:intron | 30.0% |
| TACAACTAAAGACTTGCATA+TGG | + | chr3_2:4778933-4778952 | Msa0391880:intron | 30.0% | |
| ACAACTAAAGACTTGCATAT+GGG | + | chr3_2:4778934-4778953 | Msa0391880:intron | 30.0% | |
| TAAACCTATATATCCCCTAA+AGG | + | chr3_2:4779042-4779061 | Msa0391880:intron | 30.0% | |
| AGATTGAGAAAATAGCTCAA+GGG | - | chr3_2:4779155-4779174 | None:intergenic | 30.0% | |
| AACATGAGAAATTTGTGGTA+GGG | - | chr3_2:4779354-4779373 | None:intergenic | 30.0% | |
| GTGATTACGAAGAAAAATTG+TGG | - | chr3_2:4779387-4779406 | None:intergenic | 30.0% | |
| TAAAAAACAATAAAGGGTGG+TGG | - | chr3_2:4779480-4779499 | None:intergenic | 30.0% | |
| TGGAGAATATACAATGTATG+TGG | + | chr3_2:4779552-4779571 | Msa0391880:CDS | 30.0% | |
| ATATACAATGTATGTGGATC+AGG | + | chr3_2:4779558-4779577 | Msa0391880:CDS | 30.0% | |
| GATACTTTATACGGGATACA+CGG | - | chr3_2:4777632-4777651 | None:intergenic | 35.0% | |
| ! | CAGGGTTTTCCTATTTTCTT+TGG | + | chr3_2:4777662-4777681 | Msa0391880:intron | 35.0% |
| !! | AAGAGTTGGTAGTGATGTTA+GGG | - | chr3_2:4777835-4777854 | None:intergenic | 35.0% |
| TTTGTTCCCTTGACAATAGA+GGG | - | chr3_2:4777989-4778008 | None:intergenic | 35.0% | |
| ! | TTTTGTTCCCTTGACAATAG+AGG | - | chr3_2:4777990-4778009 | None:intergenic | 35.0% |
| CATGCTTCAGTGAAGTATAA+GGG | - | chr3_2:4778021-4778040 | None:intergenic | 35.0% | |
| AAATATATCTGCTCTTCCGA+TGG | - | chr3_2:4778408-4778427 | None:intergenic | 35.0% | |
| GAGCAGATATATTTAACCCT+TGG | + | chr3_2:4778414-4778433 | Msa0391880:intron | 35.0% | |
| TTTAACCCTTGGGAAAATCT+AGG | + | chr3_2:4778425-4778444 | Msa0391880:intron | 35.0% | |
| ! | CTTTTTCCTAGATTTTCCCA+AGG | - | chr3_2:4778434-4778453 | None:intergenic | 35.0% |
| ! | TAGAGTACTATTTGACCCTT+TGG | + | chr3_2:4778592-4778611 | Msa0391880:intron | 35.0% |
| ! | AGAGTACTATTTGACCCTTT+GGG | + | chr3_2:4778593-4778612 | Msa0391880:intron | 35.0% |
| ! | TTTTTCCTGGATTTCCCAAA+GGG | - | chr3_2:4778610-4778629 | None:intergenic | 35.0% |
| !!! | TTTTTTCCTGGATTTCCCAA+AGG | - | chr3_2:4778611-4778630 | None:intergenic | 35.0% |
| AAAACTTAGTGTCCATACGT+AGG | + | chr3_2:4778715-4778734 | Msa0391880:intron | 35.0% | |
| AAACTTAGTGTCCATACGTA+GGG | + | chr3_2:4778716-4778735 | Msa0391880:intron | 35.0% | |
| CATTGTTAATTAAAGGCTGG+TGG | + | chr3_2:4778840-4778859 | Msa0391880:intron | 35.0% | |
| !! | GGAGTTTTTGCTATAGGAAT+AGG | + | chr3_2:4778962-4778981 | Msa0391880:intron | 35.0% |
| TGAAGTCGTTCAAATGTGAA+TGG | - | chr3_2:4779004-4779023 | None:intergenic | 35.0% | |
| TTTGAATGCAGCATCCTTTA+GGG | - | chr3_2:4779059-4779078 | None:intergenic | 35.0% | |
| ! | TTTTGAATGCAGCATCCTTT+AGG | - | chr3_2:4779060-4779079 | None:intergenic | 35.0% |
| TTGACACCTATGACTTCTTT+AGG | - | chr3_2:4779107-4779126 | None:intergenic | 35.0% | |
| AGAAGTCATAGGTGTCAATT+TGG | + | chr3_2:4779109-4779128 | Msa0391880:intron | 35.0% | |
| ! | TCAATTTGGTGAACTAGCTA+GGG | + | chr3_2:4779123-4779142 | Msa0391880:intron | 35.0% |
| CAGATTGAGAAAATAGCTCA+AGG | - | chr3_2:4779156-4779175 | None:intergenic | 35.0% | |
| AAAATACCCATGCCACATAA+GGG | - | chr3_2:4779247-4779266 | None:intergenic | 35.0% | |
| AAAAATACCCATGCCACATA+AGG | - | chr3_2:4779248-4779267 | None:intergenic | 35.0% | |
| GAACATGAGAAATTTGTGGT+AGG | - | chr3_2:4779355-4779374 | None:intergenic | 35.0% | |
| GAAGGAACATGAGAAATTTG+TGG | - | chr3_2:4779359-4779378 | None:intergenic | 35.0% | |
| AGAAAAATTGTGGGTTTGGA+AGG | - | chr3_2:4779377-4779396 | None:intergenic | 35.0% | |
| ACGAAGAAAAATTGTGGGTT+TGG | - | chr3_2:4779381-4779400 | None:intergenic | 35.0% | |
| AAGTAGCTTGAAGTTGAAGA+GGG | - | chr3_2:4779424-4779443 | None:intergenic | 35.0% | |
| CTTCTTCTTCCTTTCAATTC+AGG | + | chr3_2:4779450-4779469 | Msa0391880:intron | 35.0% | |
| GATACTTTATACGGGATACA+CGG | - | chr3_2:4777632-4777651 | None:intergenic | 35.0% | |
| ! | CAGGGTTTTCCTATTTTCTT+TGG | + | chr3_2:4777662-4777681 | Msa0391880:intron | 35.0% |
| !! | AAGAGTTGGTAGTGATGTTA+GGG | - | chr3_2:4777835-4777854 | None:intergenic | 35.0% |
| TTTGTTCCCTTGACAATAGA+GGG | - | chr3_2:4777989-4778008 | None:intergenic | 35.0% | |
| ! | TTTTGTTCCCTTGACAATAG+AGG | - | chr3_2:4777990-4778009 | None:intergenic | 35.0% |
| CATGCTTCAGTGAAGTATAA+GGG | - | chr3_2:4778021-4778040 | None:intergenic | 35.0% | |
| AAATATATCTGCTCTTCCGA+TGG | - | chr3_2:4778408-4778427 | None:intergenic | 35.0% | |
| GAGCAGATATATTTAACCCT+TGG | + | chr3_2:4778414-4778433 | Msa0391880:intron | 35.0% | |
| TTTAACCCTTGGGAAAATCT+AGG | + | chr3_2:4778425-4778444 | Msa0391880:intron | 35.0% | |
| ! | CTTTTTCCTAGATTTTCCCA+AGG | - | chr3_2:4778434-4778453 | None:intergenic | 35.0% |
| ! | TAGAGTACTATTTGACCCTT+TGG | + | chr3_2:4778592-4778611 | Msa0391880:intron | 35.0% |
| ! | AGAGTACTATTTGACCCTTT+GGG | + | chr3_2:4778593-4778612 | Msa0391880:intron | 35.0% |
| ! | TTTTTCCTGGATTTCCCAAA+GGG | - | chr3_2:4778610-4778629 | None:intergenic | 35.0% |
| !!! | TTTTTTCCTGGATTTCCCAA+AGG | - | chr3_2:4778611-4778630 | None:intergenic | 35.0% |
| AAAACTTAGTGTCCATACGT+AGG | + | chr3_2:4778715-4778734 | Msa0391880:intron | 35.0% | |
| AAACTTAGTGTCCATACGTA+GGG | + | chr3_2:4778716-4778735 | Msa0391880:intron | 35.0% | |
| CATTGTTAATTAAAGGCTGG+TGG | + | chr3_2:4778840-4778859 | Msa0391880:intron | 35.0% | |
| !! | GGAGTTTTTGCTATAGGAAT+AGG | + | chr3_2:4778962-4778981 | Msa0391880:intron | 35.0% |
| TGAAGTCGTTCAAATGTGAA+TGG | - | chr3_2:4779004-4779023 | None:intergenic | 35.0% | |
| TTTGAATGCAGCATCCTTTA+GGG | - | chr3_2:4779059-4779078 | None:intergenic | 35.0% | |
| ! | TTTTGAATGCAGCATCCTTT+AGG | - | chr3_2:4779060-4779079 | None:intergenic | 35.0% |
| TTGACACCTATGACTTCTTT+AGG | - | chr3_2:4779107-4779126 | None:intergenic | 35.0% | |
| AGAAGTCATAGGTGTCAATT+TGG | + | chr3_2:4779109-4779128 | Msa0391880:intron | 35.0% | |
| ! | TCAATTTGGTGAACTAGCTA+GGG | + | chr3_2:4779123-4779142 | Msa0391880:intron | 35.0% |
| CAGATTGAGAAAATAGCTCA+AGG | - | chr3_2:4779156-4779175 | None:intergenic | 35.0% | |
| AAAATACCCATGCCACATAA+GGG | - | chr3_2:4779247-4779266 | None:intergenic | 35.0% | |
| AAAAATACCCATGCCACATA+AGG | - | chr3_2:4779248-4779267 | None:intergenic | 35.0% | |
| GAACATGAGAAATTTGTGGT+AGG | - | chr3_2:4779355-4779374 | None:intergenic | 35.0% | |
| GAAGGAACATGAGAAATTTG+TGG | - | chr3_2:4779359-4779378 | None:intergenic | 35.0% | |
| AGAAAAATTGTGGGTTTGGA+AGG | - | chr3_2:4779377-4779396 | None:intergenic | 35.0% | |
| ACGAAGAAAAATTGTGGGTT+TGG | - | chr3_2:4779381-4779400 | None:intergenic | 35.0% | |
| AAGTAGCTTGAAGTTGAAGA+GGG | - | chr3_2:4779424-4779443 | None:intergenic | 35.0% | |
| CTTCTTCTTCCTTTCAATTC+AGG | + | chr3_2:4779450-4779469 | Msa0391880:intron | 35.0% | |
| TGTCGATGAAACAGCAACAT+CGG | - | chr3_2:4777787-4777806 | None:intergenic | 40.0% | |
| !! | TGTTGCTGTTTCATCGACAA+AGG | + | chr3_2:4777788-4777807 | Msa0391880:intron | 40.0% |
| !! | TGATGTTAGGGTTTTGGTAG+TGG | - | chr3_2:4777823-4777842 | None:intergenic | 40.0% |
| !! | TGGTAGTGATGTTAGGGTTT+TGG | - | chr3_2:4777829-4777848 | None:intergenic | 40.0% |
| !! | GAAGAGTTGGTAGTGATGTT+AGG | - | chr3_2:4777836-4777855 | None:intergenic | 40.0% |
| ACAAGTTTCAACGGAAGAGT+TGG | - | chr3_2:4777849-4777868 | None:intergenic | 40.0% | |
| AACTCTTCCGTTGAAACTTG+TGG | + | chr3_2:4777848-4777867 | Msa0391880:intron | 40.0% | |
| ! | AAGTTGAAGGAGTTGGTTCA+CGG | - | chr3_2:4777895-4777914 | None:intergenic | 40.0% |
| CAACTCCTTCAACTTAAACG+CGG | + | chr3_2:4777900-4777919 | Msa0391880:intron | 40.0% | |
| TTGTCAAGGGAACAAAACTC+AGG | + | chr3_2:4777993-4778012 | Msa0391880:intron | 40.0% | |
| CCATGCTTCAGTGAAGTATA+AGG | - | chr3_2:4778022-4778041 | None:intergenic | 40.0% | |
| CCTTATACTTCACTGAAGCA+TGG | + | chr3_2:4778019-4778038 | Msa0391880:intron | 40.0% | |
| ! | CGCTATGTTAGTGAAGTGTT+CGG | + | chr3_2:4778045-4778064 | Msa0391880:intron | 40.0% |
| ! | TTGATAAACGGTTTGCTCTG+TGG | + | chr3_2:4778372-4778391 | Msa0391880:intron | 40.0% |
| ! | AGGGTACTTGTTCTTAGAAG+AGG | + | chr3_2:4778568-4778587 | Msa0391880:intron | 40.0% |
| GGGTACTTGTTCTTAGAAGA+GGG | + | chr3_2:4778569-4778588 | Msa0391880:intron | 40.0% | |
| AACTTAGTGTCCATACGTAG+GGG | + | chr3_2:4778717-4778736 | Msa0391880:intron | 40.0% | |
| ! | GCATCCTTTAGGGGATATAT+AGG | - | chr3_2:4779049-4779068 | None:intergenic | 40.0% |
| TTGAATGCAGCATCCTTTAG+GGG | - | chr3_2:4779058-4779077 | None:intergenic | 40.0% | |
| CTATGACTTCTTTAGGTGGA+GGG | - | chr3_2:4779100-4779119 | None:intergenic | 40.0% | |
| ACACCTATGACTTCTTTAGG+TGG | - | chr3_2:4779104-4779123 | None:intergenic | 40.0% | |
| ! | GTCAATTTGGTGAACTAGCT+AGG | + | chr3_2:4779122-4779141 | Msa0391880:intron | 40.0% |
| AAATACCCATGCCACATAAG+GGG | - | chr3_2:4779246-4779265 | None:intergenic | 40.0% | |
| GAGATCTAAGAGAGAGAAGA+GGG | - | chr3_2:4779299-4779318 | None:intergenic | 40.0% | |
| AGAGTGAGAGGAAGAAGAAA+GGG | - | chr3_2:4779321-4779340 | None:intergenic | 40.0% | |
| GAAGTAGCTTGAAGTTGAAG+AGG | - | chr3_2:4779425-4779444 | None:intergenic | 40.0% | |
| !! | TGATTTCTAGCTGATGCAAC+TGG | + | chr3_2:4779532-4779551 | Msa0391880:intron | 40.0% |
| GTTATTCTCACCCGTTACAA+CGG | + | chr3_2:4779670-4779689 | Msa0391880:CDS | 40.0% | |
| TGCCAATGCTATGTTGTACA+TGG | + | chr3_2:4779714-4779733 | Msa0391880:CDS | 40.0% | |
| TGCCATGTACAACATAGCAT+TGG | - | chr3_2:4779719-4779738 | None:intergenic | 40.0% | |
| TGTCGATGAAACAGCAACAT+CGG | - | chr3_2:4777787-4777806 | None:intergenic | 40.0% | |
| !! | TGTTGCTGTTTCATCGACAA+AGG | + | chr3_2:4777788-4777807 | Msa0391880:intron | 40.0% |
| !! | TGATGTTAGGGTTTTGGTAG+TGG | - | chr3_2:4777823-4777842 | None:intergenic | 40.0% |
| !! | TGGTAGTGATGTTAGGGTTT+TGG | - | chr3_2:4777829-4777848 | None:intergenic | 40.0% |
| !! | GAAGAGTTGGTAGTGATGTT+AGG | - | chr3_2:4777836-4777855 | None:intergenic | 40.0% |
| ACAAGTTTCAACGGAAGAGT+TGG | - | chr3_2:4777849-4777868 | None:intergenic | 40.0% | |
| AACTCTTCCGTTGAAACTTG+TGG | + | chr3_2:4777848-4777867 | Msa0391880:intron | 40.0% | |
| ! | AAGTTGAAGGAGTTGGTTCA+CGG | - | chr3_2:4777895-4777914 | None:intergenic | 40.0% |
| CAACTCCTTCAACTTAAACG+CGG | + | chr3_2:4777900-4777919 | Msa0391880:intron | 40.0% | |
| TTGTCAAGGGAACAAAACTC+AGG | + | chr3_2:4777993-4778012 | Msa0391880:intron | 40.0% | |
| CCATGCTTCAGTGAAGTATA+AGG | - | chr3_2:4778022-4778041 | None:intergenic | 40.0% | |
| CCTTATACTTCACTGAAGCA+TGG | + | chr3_2:4778019-4778038 | Msa0391880:intron | 40.0% | |
| ! | CGCTATGTTAGTGAAGTGTT+CGG | + | chr3_2:4778045-4778064 | Msa0391880:intron | 40.0% |
| ! | TTGATAAACGGTTTGCTCTG+TGG | + | chr3_2:4778372-4778391 | Msa0391880:intron | 40.0% |
| ! | AGGGTACTTGTTCTTAGAAG+AGG | + | chr3_2:4778568-4778587 | Msa0391880:intron | 40.0% |
| GGGTACTTGTTCTTAGAAGA+GGG | + | chr3_2:4778569-4778588 | Msa0391880:intron | 40.0% | |
| AACTTAGTGTCCATACGTAG+GGG | + | chr3_2:4778717-4778736 | Msa0391880:intron | 40.0% | |
| ! | GCATCCTTTAGGGGATATAT+AGG | - | chr3_2:4779049-4779068 | None:intergenic | 40.0% |
| TTGAATGCAGCATCCTTTAG+GGG | - | chr3_2:4779058-4779077 | None:intergenic | 40.0% | |
| CTATGACTTCTTTAGGTGGA+GGG | - | chr3_2:4779100-4779119 | None:intergenic | 40.0% | |
| ACACCTATGACTTCTTTAGG+TGG | - | chr3_2:4779104-4779123 | None:intergenic | 40.0% | |
| ! | GTCAATTTGGTGAACTAGCT+AGG | + | chr3_2:4779122-4779141 | Msa0391880:intron | 40.0% |
| AAATACCCATGCCACATAAG+GGG | - | chr3_2:4779246-4779265 | None:intergenic | 40.0% | |
| GAGATCTAAGAGAGAGAAGA+GGG | - | chr3_2:4779299-4779318 | None:intergenic | 40.0% | |
| AGAGTGAGAGGAAGAAGAAA+GGG | - | chr3_2:4779321-4779340 | None:intergenic | 40.0% | |
| GAAGTAGCTTGAAGTTGAAG+AGG | - | chr3_2:4779425-4779444 | None:intergenic | 40.0% | |
| !! | TGATTTCTAGCTGATGCAAC+TGG | + | chr3_2:4779532-4779551 | Msa0391880:intron | 40.0% |
| GTTATTCTCACCCGTTACAA+CGG | + | chr3_2:4779670-4779689 | Msa0391880:CDS | 40.0% | |
| TGCCAATGCTATGTTGTACA+TGG | + | chr3_2:4779714-4779733 | Msa0391880:CDS | 40.0% | |
| TGCCATGTACAACATAGCAT+TGG | - | chr3_2:4779719-4779738 | None:intergenic | 40.0% | |
| ACGGGATACACGGTTAACTT+GGG | - | chr3_2:4777622-4777641 | None:intergenic | 45.0% | |
| TACGGGATACACGGTTAACT+TGG | - | chr3_2:4777623-4777642 | None:intergenic | 45.0% | |
| ! | CGCTCTAAACATTCAGAACG+AGG | + | chr3_2:4777741-4777760 | Msa0391880:intron | 45.0% |
| ACATTCAGAACGAGGTAGCA+TGG | + | chr3_2:4777749-4777768 | Msa0391880:intron | 45.0% | |
| CATTCAGAACGAGGTAGCAT+GGG | + | chr3_2:4777750-4777769 | Msa0391880:intron | 45.0% | |
| !! | TGCTGTTTCATCGACAAAGG+AGG | + | chr3_2:4777791-4777810 | Msa0391880:intron | 45.0% |
| !!! | TGTTAGGGTTTTGGTAGTGG+TGG | - | chr3_2:4777820-4777839 | None:intergenic | 45.0% |
| ! | AGTTGAAGGAGTTGGTTCAC+GGG | - | chr3_2:4777894-4777913 | None:intergenic | 45.0% |
| !! | CGCGTTTAAGTTGAAGGAGT+TGG | - | chr3_2:4777902-4777921 | None:intergenic | 45.0% |
| !! | TGCATCCGCGTTTAAGTTGA+AGG | - | chr3_2:4777908-4777927 | None:intergenic | 45.0% |
| TTAAACGCGGATGCAAGTCA+TGG | + | chr3_2:4777913-4777932 | Msa0391880:intron | 45.0% | |
| GCAGTTGAGAATGTGCTTCT+TGG | - | chr3_2:4777967-4777986 | None:intergenic | 45.0% | |
| TCAACTGCCCTCTATTGTCA+AGG | + | chr3_2:4777979-4777998 | Msa0391880:intron | 45.0% | |
| CAACTGCCCTCTATTGTCAA+GGG | + | chr3_2:4777980-4777999 | Msa0391880:intron | 45.0% | |
| ! | ATAAACGGTTTGCTCTGTGG+TGG | + | chr3_2:4778375-4778394 | Msa0391880:intron | 45.0% |
| TATCTGCTCTTCCGATGGAA+GGG | - | chr3_2:4778403-4778422 | None:intergenic | 45.0% | |
| ATATCTGCTCTTCCGATGGA+AGG | - | chr3_2:4778404-4778423 | None:intergenic | 45.0% | |
| ! | TTTGACCCTTTGGGAAATCC+AGG | + | chr3_2:4778602-4778621 | Msa0391880:intron | 45.0% |
| AAAGACTTGCATATGGGAGC+AGG | + | chr3_2:4778940-4778959 | Msa0391880:intron | 45.0% | |
| AAGACTTGCATATGGGAGCA+GGG | + | chr3_2:4778941-4778960 | Msa0391880:intron | 45.0% | |
| !! | GAGCAGGGAGTTTTTGCTAT+AGG | + | chr3_2:4778956-4778975 | Msa0391880:intron | 45.0% |
| CCTATGACTTCTTTAGGTGG+AGG | - | chr3_2:4779101-4779120 | None:intergenic | 45.0% | |
| CCTCCACCTAAAGAAGTCAT+AGG | + | chr3_2:4779098-4779117 | Msa0391880:intron | 45.0% | |
| TGGAAGAGTGGTATGGAGAA+GGG | - | chr3_2:4779219-4779238 | None:intergenic | 45.0% | |
| ATGGAAGAGTGGTATGGAGA+AGG | - | chr3_2:4779220-4779239 | None:intergenic | 45.0% | |
| ! | ATAAGGGGTGTATGGAAGAG+TGG | - | chr3_2:4779231-4779250 | None:intergenic | 45.0% |
| TCTTCCATACACCCCTTATG+TGG | + | chr3_2:4779232-4779251 | Msa0391880:intron | 45.0% | |
| ATACACCCCTTATGTGGCAT+GGG | + | chr3_2:4779238-4779257 | Msa0391880:intron | 45.0% | |
| GGAGATCTAAGAGAGAGAAG+AGG | - | chr3_2:4779300-4779319 | None:intergenic | 45.0% | |
| CAGAGTGAGAGGAAGAAGAA+AGG | - | chr3_2:4779322-4779341 | None:intergenic | 45.0% | |
| AATTTGTGGTAGGGAGTGAG+AGG | - | chr3_2:4779345-4779364 | None:intergenic | 45.0% | |
| GGTGGTGTACCTGAATTGAA+AGG | - | chr3_2:4779462-4779481 | None:intergenic | 45.0% | |
| ATTGGCAAACCTGTCATTGG+AGG | - | chr3_2:4779701-4779720 | None:intergenic | 45.0% | |
| !! | AGCATTGGCAAACCTGTCAT+TGG | - | chr3_2:4779704-4779723 | None:intergenic | 45.0% |
| TGCTATGTTGTACATGGCAG+AGG | + | chr3_2:4779720-4779739 | Msa0391880:CDS | 45.0% | |
| TATGTTGTACATGGCAGAGG+AGG | + | chr3_2:4779723-4779742 | Msa0391880:CDS | 45.0% | |
| CCAATTCCTGCATTTGCTTG+AGG | - | chr3_2:4779771-4779790 | None:intergenic | 45.0% | |
| CCTCAAGCAAATGCAGGAAT+TGG | + | chr3_2:4779768-4779787 | Msa0391880:CDS | 45.0% | |
| ACGGGATACACGGTTAACTT+GGG | - | chr3_2:4777622-4777641 | None:intergenic | 45.0% | |
| TACGGGATACACGGTTAACT+TGG | - | chr3_2:4777623-4777642 | None:intergenic | 45.0% | |
| ! | CGCTCTAAACATTCAGAACG+AGG | + | chr3_2:4777741-4777760 | Msa0391880:intron | 45.0% |
| ACATTCAGAACGAGGTAGCA+TGG | + | chr3_2:4777749-4777768 | Msa0391880:intron | 45.0% | |
| CATTCAGAACGAGGTAGCAT+GGG | + | chr3_2:4777750-4777769 | Msa0391880:intron | 45.0% | |
| !! | TGCTGTTTCATCGACAAAGG+AGG | + | chr3_2:4777791-4777810 | Msa0391880:intron | 45.0% |
| !!! | TGTTAGGGTTTTGGTAGTGG+TGG | - | chr3_2:4777820-4777839 | None:intergenic | 45.0% |
| ! | AGTTGAAGGAGTTGGTTCAC+GGG | - | chr3_2:4777894-4777913 | None:intergenic | 45.0% |
| !! | CGCGTTTAAGTTGAAGGAGT+TGG | - | chr3_2:4777902-4777921 | None:intergenic | 45.0% |
| !! | TGCATCCGCGTTTAAGTTGA+AGG | - | chr3_2:4777908-4777927 | None:intergenic | 45.0% |
| TTAAACGCGGATGCAAGTCA+TGG | + | chr3_2:4777913-4777932 | Msa0391880:intron | 45.0% | |
| GCAGTTGAGAATGTGCTTCT+TGG | - | chr3_2:4777967-4777986 | None:intergenic | 45.0% | |
| TCAACTGCCCTCTATTGTCA+AGG | + | chr3_2:4777979-4777998 | Msa0391880:intron | 45.0% | |
| CAACTGCCCTCTATTGTCAA+GGG | + | chr3_2:4777980-4777999 | Msa0391880:intron | 45.0% | |
| ! | ATAAACGGTTTGCTCTGTGG+TGG | + | chr3_2:4778375-4778394 | Msa0391880:intron | 45.0% |
| TATCTGCTCTTCCGATGGAA+GGG | - | chr3_2:4778403-4778422 | None:intergenic | 45.0% | |
| ATATCTGCTCTTCCGATGGA+AGG | - | chr3_2:4778404-4778423 | None:intergenic | 45.0% | |
| ! | TTTGACCCTTTGGGAAATCC+AGG | + | chr3_2:4778602-4778621 | Msa0391880:intron | 45.0% |
| AAAGACTTGCATATGGGAGC+AGG | + | chr3_2:4778940-4778959 | Msa0391880:intron | 45.0% | |
| AAGACTTGCATATGGGAGCA+GGG | + | chr3_2:4778941-4778960 | Msa0391880:intron | 45.0% | |
| !! | GAGCAGGGAGTTTTTGCTAT+AGG | + | chr3_2:4778956-4778975 | Msa0391880:intron | 45.0% |
| CCTATGACTTCTTTAGGTGG+AGG | - | chr3_2:4779101-4779120 | None:intergenic | 45.0% | |
| CCTCCACCTAAAGAAGTCAT+AGG | + | chr3_2:4779098-4779117 | Msa0391880:intron | 45.0% | |
| TGGAAGAGTGGTATGGAGAA+GGG | - | chr3_2:4779219-4779238 | None:intergenic | 45.0% | |
| ATGGAAGAGTGGTATGGAGA+AGG | - | chr3_2:4779220-4779239 | None:intergenic | 45.0% | |
| ! | ATAAGGGGTGTATGGAAGAG+TGG | - | chr3_2:4779231-4779250 | None:intergenic | 45.0% |
| TCTTCCATACACCCCTTATG+TGG | + | chr3_2:4779232-4779251 | Msa0391880:intron | 45.0% | |
| ATACACCCCTTATGTGGCAT+GGG | + | chr3_2:4779238-4779257 | Msa0391880:intron | 45.0% | |
| GGAGATCTAAGAGAGAGAAG+AGG | - | chr3_2:4779300-4779319 | None:intergenic | 45.0% | |
| CAGAGTGAGAGGAAGAAGAA+AGG | - | chr3_2:4779322-4779341 | None:intergenic | 45.0% | |
| AATTTGTGGTAGGGAGTGAG+AGG | - | chr3_2:4779345-4779364 | None:intergenic | 45.0% | |
| GGTGGTGTACCTGAATTGAA+AGG | - | chr3_2:4779462-4779481 | None:intergenic | 45.0% | |
| ATTGGCAAACCTGTCATTGG+AGG | - | chr3_2:4779701-4779720 | None:intergenic | 45.0% | |
| !! | AGCATTGGCAAACCTGTCAT+TGG | - | chr3_2:4779704-4779723 | None:intergenic | 45.0% |
| TGCTATGTTGTACATGGCAG+AGG | + | chr3_2:4779720-4779739 | Msa0391880:CDS | 45.0% | |
| TATGTTGTACATGGCAGAGG+AGG | + | chr3_2:4779723-4779742 | Msa0391880:CDS | 45.0% | |
| CCAATTCCTGCATTTGCTTG+AGG | - | chr3_2:4779771-4779790 | None:intergenic | 45.0% | |
| CCTCAAGCAAATGCAGGAAT+TGG | + | chr3_2:4779768-4779787 | Msa0391880:CDS | 45.0% | |
| ! | CGGGATACACGGTTAACTTG+GGG | - | chr3_2:4777621-4777640 | None:intergenic | 50.0% |
| AAACAGCAACATCGGATCCC+CGG | - | chr3_2:4777779-4777798 | None:intergenic | 50.0% | |
| CATTGCATAGCCCCTACGTA+TGG | - | chr3_2:4778730-4778749 | None:intergenic | 50.0% | |
| TTAGGTGGAGGGTGAAGATG+AGG | - | chr3_2:4779089-4779108 | None:intergenic | 50.0% | |
| GGGTGTATGGAAGAGTGGTA+TGG | - | chr3_2:4779226-4779245 | None:intergenic | 50.0% | |
| ! | CATGCCACATAAGGGGTGTA+TGG | - | chr3_2:4779239-4779258 | None:intergenic | 50.0% |
| CATACACCCCTTATGTGGCA+TGG | + | chr3_2:4779237-4779256 | Msa0391880:intron | 50.0% | |
| GAAGAGGGCGAAGAAAGTTG+TGG | - | chr3_2:4779409-4779428 | None:intergenic | 50.0% | |
| CTTTCGCTACAACTACGCTC+AGG | - | chr3_2:4779625-4779644 | None:intergenic | 50.0% | |
| !! | AGTTGTAGCGAAAGAGCACC+TGG | + | chr3_2:4779631-4779650 | Msa0391880:CDS | 50.0% |
| !! | GTTGTAGCGAAAGAGCACCT+GGG | + | chr3_2:4779632-4779651 | Msa0391880:CDS | 50.0% |
| TGGAGGCAATGCCGTTGTAA+CGG | - | chr3_2:4779684-4779703 | None:intergenic | 50.0% | |
| TGAGGTCCTCAAGCAAATGC+AGG | + | chr3_2:4779762-4779781 | Msa0391880:CDS | 50.0% | |
| ! | CGGGATACACGGTTAACTTG+GGG | - | chr3_2:4777621-4777640 | None:intergenic | 50.0% |
| AAACAGCAACATCGGATCCC+CGG | - | chr3_2:4777779-4777798 | None:intergenic | 50.0% | |
| CATTGCATAGCCCCTACGTA+TGG | - | chr3_2:4778730-4778749 | None:intergenic | 50.0% | |
| TTAGGTGGAGGGTGAAGATG+AGG | - | chr3_2:4779089-4779108 | None:intergenic | 50.0% | |
| GGGTGTATGGAAGAGTGGTA+TGG | - | chr3_2:4779226-4779245 | None:intergenic | 50.0% | |
| ! | CATGCCACATAAGGGGTGTA+TGG | - | chr3_2:4779239-4779258 | None:intergenic | 50.0% |
| CATACACCCCTTATGTGGCA+TGG | + | chr3_2:4779237-4779256 | Msa0391880:intron | 50.0% | |
| GAAGAGGGCGAAGAAAGTTG+TGG | - | chr3_2:4779409-4779428 | None:intergenic | 50.0% | |
| CTTTCGCTACAACTACGCTC+AGG | - | chr3_2:4779625-4779644 | None:intergenic | 50.0% | |
| !! | AGTTGTAGCGAAAGAGCACC+TGG | + | chr3_2:4779631-4779650 | Msa0391880:CDS | 50.0% |
| !! | GTTGTAGCGAAAGAGCACCT+GGG | + | chr3_2:4779632-4779651 | Msa0391880:CDS | 50.0% |
| TGGAGGCAATGCCGTTGTAA+CGG | - | chr3_2:4779684-4779703 | None:intergenic | 50.0% | |
| TGAGGTCCTCAAGCAAATGC+AGG | + | chr3_2:4779762-4779781 | Msa0391880:CDS | 50.0% | |
| AACGAGGTAGCATGGGCAAC+CGG | + | chr3_2:4777757-4777776 | Msa0391880:intron | 55.0% | |
| GGTTCACGGGTAGTCTAAGC+AGG | - | chr3_2:4777881-4777900 | None:intergenic | 55.0% | |
| ! | CTGTGGTGGAACCCTTCCAT+CGG | + | chr3_2:4778389-4778408 | Msa0391880:intron | 55.0% |
| GGGTGAGAATAACGCGTGCT+TGG | - | chr3_2:4779663-4779682 | None:intergenic | 55.0% | |
| GGAGGCAATGCCGTTGTAAC+GGG | - | chr3_2:4779683-4779702 | None:intergenic | 55.0% | |
| ACGGCATTGCCTCCAATGAC+AGG | + | chr3_2:4779689-4779708 | Msa0391880:CDS | 55.0% | |
| ! | GGTTGCTTCTAGCTGTGCTG+AGG | + | chr3_2:4779744-4779763 | Msa0391880:CDS | 55.0% |
| AACGAGGTAGCATGGGCAAC+CGG | + | chr3_2:4777757-4777776 | Msa0391880:intron | 55.0% | |
| GGTTCACGGGTAGTCTAAGC+AGG | - | chr3_2:4777881-4777900 | None:intergenic | 55.0% | |
| ! | CTGTGGTGGAACCCTTCCAT+CGG | + | chr3_2:4778389-4778408 | Msa0391880:intron | 55.0% |
| GGGTGAGAATAACGCGTGCT+TGG | - | chr3_2:4779663-4779682 | None:intergenic | 55.0% | |
| GGAGGCAATGCCGTTGTAAC+GGG | - | chr3_2:4779683-4779702 | None:intergenic | 55.0% | |
| ACGGCATTGCCTCCAATGAC+AGG | + | chr3_2:4779689-4779708 | Msa0391880:CDS | 55.0% | |
| ! | GGTTGCTTCTAGCTGTGCTG+AGG | + | chr3_2:4779744-4779763 | Msa0391880:CDS | 55.0% |
| ACGAGGTAGCATGGGCAACC+GGG | + | chr3_2:4777758-4777777 | Msa0391880:intron | 60.0% | |
| GGAGTGAGAGGCAGAGTGAG+AGG | - | chr3_2:4779333-4779352 | None:intergenic | 60.0% | |
| ACGAGGTAGCATGGGCAACC+GGG | + | chr3_2:4777758-4777777 | Msa0391880:intron | 60.0% | |
| GGAGTGAGAGGCAGAGTGAG+AGG | - | chr3_2:4779333-4779352 | None:intergenic | 60.0% | |
| CGAGGTAGCATGGGCAACCG+GGG | + | chr3_2:4777759-4777778 | Msa0391880:intron | 65.0% | |
| CGAGGTAGCATGGGCAACCG+GGG | + | chr3_2:4777759-4777778 | Msa0391880:intron | 65.0% | |
| ACGCGTGCTTGGTCACGCCC+AGG | - | chr3_2:4779652-4779671 | None:intergenic | 70.0% | |
| ACGCGTGCTTGGTCACGCCC+AGG | - | chr3_2:4779652-4779671 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 4777535 | 4779804 | 4777535 | ID=Msa0391880;Name=Msa0391880 |
| chr3_2 | mRNA | 4777535 | 4779804 | 4777535 | ID=Msa0391880-mRNA-1;Parent=Msa0391880;Name=Msa0391880-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0|0|0|0.5|1|1|2|0|88 |
| chr3_2 | exon | 4777535 | 4777538 | 4777535 | ID=Msa0391880-mRNA-1:exon:1102;Parent=Msa0391880-mRNA-1 |
| chr3_2 | exon | 4779542 | 4779804 | 4779542 | ID=Msa0391880-mRNA-1:exon:1103;Parent=Msa0391880-mRNA-1 |
| chr3_2 | CDS | 4777535 | 4777538 | 4777535 | ID=Msa0391880-mRNA-1:cds;Parent=Msa0391880-mRNA-1 |
| chr3_2 | CDS | 4779542 | 4779804 | 4779542 | ID=Msa0391880-mRNA-1:cds;Parent=Msa0391880-mRNA-1 |
| Gene Sequence |
| Protein sequence |
