Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0391780 | XP_013460852.1 | 90.698 | 86 | 8 | 0 | 3 | 88 | 77 | 162 | 2.21e-50 | 166 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0391780 | sp|Q9LX15|DFC_ARATH | 42.667 | 75 | 43 | 0 | 6 | 80 | 80 | 154 | 4.89e-13 | 63.5 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0391780 | B7FN25 | 90.698 | 86 | 8 | 0 | 3 | 88 | 77 | 162 | 1.06e-50 | 166 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0391720 | Msa0391780 | 0.973161 | 5.803831e-136 | -8.615850e-47 |
| Msa0391780 | Msa0391840 | 0.941090 | 7.609374e-101 | -8.615850e-47 |
| Msa0391780 | Msa0391880 | 0.947316 | 8.531803e-106 | -8.615850e-47 |
| Msa0391780 | Msa0484780 | 0.802191 | 6.308078e-49 | -8.615850e-47 |
| Msa0391780 | Msa0830510 | 0.803717 | 3.050657e-49 | -8.615850e-47 |
| Msa0391780 | Msa0954920 | 0.804800 | 1.815638e-49 | -8.615850e-47 |
| Msa0391780 | Msa0985950 | 0.810018 | 1.419688e-50 | -8.615850e-47 |
| Msa0345570 | Msa0391780 | 0.963848 | 1.369260e-122 | -8.615850e-47 |
| Msa0346460 | Msa0391780 | 0.938004 | 1.375798e-98 | -8.615850e-47 |
| Msa0346560 | Msa0391780 | 0.895958 | 5.842971e-76 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0391780 | MtrunA17_Chr3g0115561 | 90.698 | 86 | 8 | 0 | 3 | 88 | 77 | 162 | 2.03e-54 | 166 |
| Msa0391780 | MtrunA17_Chr3g0124301 | 35.802 | 81 | 50 | 2 | 1 | 79 | 72 | 152 | 2.13e-14 | 64.3 |
| Msa0391780 | MtrunA17_Chr2g0283801 | 37.349 | 83 | 49 | 1 | 2 | 81 | 75 | 157 | 1.27e-12 | 59.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0391780 | AT4G08685.1 | 44.048 | 84 | 47 | 0 | 3 | 86 | 76 | 159 | 1.71e-22 | 85.5 |
| Msa0391780 | AT1G78040.1 | 40.230 | 87 | 51 | 1 | 1 | 87 | 78 | 163 | 1.60e-15 | 67.8 |
| Msa0391780 | AT1G78040.3 | 40.230 | 87 | 51 | 1 | 1 | 87 | 78 | 163 | 1.60e-15 | 67.8 |
| Msa0391780 | AT1G78040.2 | 40.230 | 87 | 51 | 1 | 1 | 87 | 78 | 163 | 1.60e-15 | 67.8 |
| Msa0391780 | AT5G10130.1 | 42.667 | 75 | 43 | 0 | 6 | 80 | 80 | 154 | 4.97e-14 | 63.5 |
Find 22 sgRNAs with CRISPR-Local
Find 352 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGATTTCTAGCTGATGCAAC+TGG | 0.377402 | 3_2:+4613229 | Msa0391780:intron |
| CCTCAAGCAAATGCAGGAAT+TGG | 0.399028 | 3_2:+4613465 | Msa0391780:CDS |
| GGAGGCAATGCCGTTGTAAC+GGG | 0.439821 | 3_2:-4613377 | None:intergenic |
| AGTTGTAGCGAAAGAGCACC+TGG | 0.442879 | 3_2:+4613328 | Msa0391780:CDS |
| ATATACAATGTATGTGGATC+AGG | 0.452269 | 3_2:+4613255 | Msa0391780:CDS |
| AGCATTGGCAAACCTGTCAT+TGG | 0.466304 | 3_2:-4613398 | None:intergenic |
| CCAATTCCTGCATTTGCTTG+AGG | 0.488555 | 3_2:-4613465 | None:intergenic |
| TGGAGGCAATGCCGTTGTAA+CGG | 0.522858 | 3_2:-4613378 | None:intergenic |
| GGGTGAGAATAACGCGTGCT+TGG | 0.527810 | 3_2:-4613357 | None:intergenic |
| ACGGCATTGCCTCCAATGAC+AGG | 0.539090 | 3_2:+4613386 | Msa0391780:CDS |
| TGCTATGTTGTACATGGCAG+AGG | 0.540527 | 3_2:+4613417 | Msa0391780:CDS |
| TGCCAATGCTATGTTGTACA+TGG | 0.550672 | 3_2:+4613411 | Msa0391780:CDS |
| TGGAGAATATACAATGTATG+TGG | 0.553534 | 3_2:+4613249 | Msa0391780:CDS |
| ACGCGTGCTTGGTCACGCCC+AGG | 0.556503 | 3_2:-4613346 | None:intergenic |
| ATTGGCAAACCTGTCATTGG+AGG | 0.565263 | 3_2:-4613395 | None:intergenic |
| TGCCATGTACAACATAGCAT+TGG | 0.582518 | 3_2:-4613413 | None:intergenic |
| GTTATTCTCACCCGTTACAA+CGG | 0.584831 | 3_2:+4613367 | Msa0391780:CDS |
| TGAGGTCCTCAAGCAAATGC+AGG | 0.587649 | 3_2:+4613459 | Msa0391780:CDS |
| GGTTGCTTCTAGCTGTGCTG+AGG | 0.620393 | 3_2:+4613441 | Msa0391780:CDS |
| CTTTCGCTACAACTACGCTC+AGG | 0.623193 | 3_2:-4613319 | None:intergenic |
| TATGTTGTACATGGCAGAGG+AGG | 0.691786 | 3_2:+4613420 | Msa0391780:CDS |
| GTTGTAGCGAAAGAGCACCT+GGG | 0.714138 | 3_2:+4613329 | Msa0391780:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CTAAATTATGTAAAAATAAA+CGG | - | chr3_2:4611772-4611791 | None:intergenic | 10.0% |
| !! | TTGTTATAAAAAACAATAAA+GGG | - | chr3_2:4613183-4613202 | None:intergenic | 10.0% |
| !! | AATAAAGAATAAAAATGAAA+GGG | - | chr3_2:4613206-4613225 | None:intergenic | 10.0% |
| !! | AAATAAAGAATAAAAATGAA+AGG | - | chr3_2:4613207-4613226 | None:intergenic | 10.0% |
| !! | CTAAATTATGTAAAAATAAA+CGG | - | chr3_2:4611772-4611791 | None:intergenic | 10.0% |
| !! | TTGTTATAAAAAACAATAAA+GGG | - | chr3_2:4613183-4613202 | None:intergenic | 10.0% |
| !! | AATAAAGAATAAAAATGAAA+GGG | - | chr3_2:4613206-4613225 | None:intergenic | 10.0% |
| !! | AAATAAAGAATAAAAATGAA+AGG | - | chr3_2:4613207-4613226 | None:intergenic | 10.0% |
| !! | AACAATAATAAAACCTAATT+TGG | - | chr3_2:4611387-4611406 | None:intergenic | 15.0% |
| !!! | TTATTGTTATTATTGTATCA+AGG | + | chr3_2:4611399-4611418 | Msa0391780:intron | 15.0% |
| !! | TTAATGCAGTTATTTATTTA+TGG | + | chr3_2:4612873-4612892 | Msa0391780:intron | 15.0% |
| !! | ATTTATTTATGGAAAAAGAT+TGG | + | chr3_2:4612884-4612903 | Msa0391780:intron | 15.0% |
| !! | GTTGTTATAAAAAACAATAA+AGG | - | chr3_2:4613184-4613203 | None:intergenic | 15.0% |
| !! | AACAATAATAAAACCTAATT+TGG | - | chr3_2:4611387-4611406 | None:intergenic | 15.0% |
| !!! | TTATTGTTATTATTGTATCA+AGG | + | chr3_2:4611399-4611418 | Msa0391780:intron | 15.0% |
| !! | TTAATGCAGTTATTTATTTA+TGG | + | chr3_2:4612873-4612892 | Msa0391780:intron | 15.0% |
| !! | ATTTATTTATGGAAAAAGAT+TGG | + | chr3_2:4612884-4612903 | Msa0391780:intron | 15.0% |
| !! | GTTGTTATAAAAAACAATAA+AGG | - | chr3_2:4613184-4613203 | None:intergenic | 15.0% |
| !!! | GTTTTTTAAAAGAGGATAAA+CGG | - | chr3_2:4611263-4611282 | None:intergenic | 20.0% |
| !! | TTATATAGGGATACTTTATA+CGG | - | chr3_2:4611338-4611357 | None:intergenic | 20.0% |
| !!! | AATGTTTCAGTATTGATAAA+CGG | + | chr3_2:4612057-4612076 | Msa0391780:intron | 20.0% |
| !! | TAATGAAAAAATCATATCCT+AGG | - | chr3_2:4612179-4612198 | None:intergenic | 20.0% |
| !! | TTATAAAAAACAATAAAGGG+TGG | - | chr3_2:4613180-4613199 | None:intergenic | 20.0% |
| !!! | GTTTTTTAAAAGAGGATAAA+CGG | - | chr3_2:4611263-4611282 | None:intergenic | 20.0% |
| !! | TTATATAGGGATACTTTATA+CGG | - | chr3_2:4611338-4611357 | None:intergenic | 20.0% |
| !!! | AATGTTTCAGTATTGATAAA+CGG | + | chr3_2:4612057-4612076 | Msa0391780:intron | 20.0% |
| !! | TAATGAAAAAATCATATCCT+AGG | - | chr3_2:4612179-4612198 | None:intergenic | 20.0% |
| !! | TTATAAAAAACAATAAAGGG+TGG | - | chr3_2:4613180-4613199 | None:intergenic | 20.0% |
| ! | TATATAGGGATACTTTATAC+GGG | - | chr3_2:4611337-4611356 | None:intergenic | 25.0% |
| !! | TAAAGTATCCCTATATAATC+AGG | + | chr3_2:4611340-4611359 | Msa0391780:intron | 25.0% |
| !! | AAAGTATCCCTATATAATCA+GGG | + | chr3_2:4611341-4611360 | Msa0391780:intron | 25.0% |
| !! | AATTTGGTTCCAAAGAAAAT+AGG | - | chr3_2:4611371-4611390 | None:intergenic | 25.0% |
| !!! | ATTTTCTTTGGAACCAAATT+AGG | + | chr3_2:4611371-4611390 | Msa0391780:intron | 25.0% |
| ! | TTTAGTTGCAGTGAAATTTA+TGG | + | chr3_2:4611787-4611806 | Msa0391780:intron | 25.0% |
| ! | GTTTATCAATACTGAAACAT+TGG | - | chr3_2:4612058-4612077 | None:intergenic | 25.0% |
| ! | AGAAGTTAGTGTTCATATTT+AGG | + | chr3_2:4612245-4612264 | Msa0391780:intron | 25.0% |
| ! | GAAGTTAGTGTTCATATTTA+GGG | + | chr3_2:4612246-4612265 | Msa0391780:intron | 25.0% |
| ! | CATGGATCATTGTTAATTAA+AGG | + | chr3_2:4612530-4612549 | Msa0391780:intron | 25.0% |
| !! | TAGTTTGTAGAAAATGGAAA+AGG | + | chr3_2:4612596-4612615 | Msa0391780:intron | 25.0% |
| ! | AGTTTGTAGAAAATGGAAAA+GGG | + | chr3_2:4612597-4612616 | Msa0391780:intron | 25.0% |
| ! | TAGGAATAGGAATAACTTTA+CGG | + | chr3_2:4612672-4612691 | Msa0391780:intron | 25.0% |
| ! | TGATTACGAAGAAAAATTGT+GGG | - | chr3_2:4613083-4613102 | None:intergenic | 25.0% |
| ! | TATATAGGGATACTTTATAC+GGG | - | chr3_2:4611337-4611356 | None:intergenic | 25.0% |
| !! | TAAAGTATCCCTATATAATC+AGG | + | chr3_2:4611340-4611359 | Msa0391780:intron | 25.0% |
| !! | AAAGTATCCCTATATAATCA+GGG | + | chr3_2:4611341-4611360 | Msa0391780:intron | 25.0% |
| !! | AATTTGGTTCCAAAGAAAAT+AGG | - | chr3_2:4611371-4611390 | None:intergenic | 25.0% |
| !!! | ATTTTCTTTGGAACCAAATT+AGG | + | chr3_2:4611371-4611390 | Msa0391780:intron | 25.0% |
| ! | TTTAGTTGCAGTGAAATTTA+TGG | + | chr3_2:4611787-4611806 | Msa0391780:intron | 25.0% |
| ! | GTTTATCAATACTGAAACAT+TGG | - | chr3_2:4612058-4612077 | None:intergenic | 25.0% |
| ! | AGAAGTTAGTGTTCATATTT+AGG | + | chr3_2:4612245-4612264 | Msa0391780:intron | 25.0% |
| ! | GAAGTTAGTGTTCATATTTA+GGG | + | chr3_2:4612246-4612265 | Msa0391780:intron | 25.0% |
| ! | CATGGATCATTGTTAATTAA+AGG | + | chr3_2:4612530-4612549 | Msa0391780:intron | 25.0% |
| !! | TAGTTTGTAGAAAATGGAAA+AGG | + | chr3_2:4612596-4612615 | Msa0391780:intron | 25.0% |
| ! | AGTTTGTAGAAAATGGAAAA+GGG | + | chr3_2:4612597-4612616 | Msa0391780:intron | 25.0% |
| ! | TAGGAATAGGAATAACTTTA+CGG | + | chr3_2:4612672-4612691 | Msa0391780:intron | 25.0% |
| ! | TGATTACGAAGAAAAATTGT+GGG | - | chr3_2:4613083-4613102 | None:intergenic | 25.0% |
| !!! | ATACGCACGTTTTTTAAAAG+AGG | - | chr3_2:4611271-4611290 | None:intergenic | 30.0% |
| AGGAAAACCCTGATTATATA+GGG | - | chr3_2:4611351-4611370 | None:intergenic | 30.0% | |
| TAGGAAAACCCTGATTATAT+AGG | - | chr3_2:4611352-4611371 | None:intergenic | 30.0% | |
| ATTTCTTCCACAAGTTTCAA+CGG | - | chr3_2:4611555-4611574 | None:intergenic | 30.0% | |
| CAATCAAATCGTAAGTGTAT+AGG | - | chr3_2:4612013-4612032 | None:intergenic | 30.0% | |
| AGCAGATATATTTAACCCTT+GGG | + | chr3_2:4612112-4612131 | Msa0391780:intron | 30.0% | |
| ! | TTTTTCCTAGATTTTCCCAA+GGG | - | chr3_2:4612130-4612149 | None:intergenic | 30.0% |
| GTTACTTACATATATAGCCT+AGG | + | chr3_2:4612159-4612178 | Msa0391780:intron | 30.0% | |
| !!! | TGATAGGTAACTTTTTTTCC+TGG | - | chr3_2:4612320-4612339 | None:intergenic | 30.0% |
| AAAGTTACCTATCATAGCTT+TGG | + | chr3_2:4612326-4612345 | Msa0391780:intron | 30.0% | |
| ATCATATCCAAAGCTATGAT+AGG | - | chr3_2:4612336-4612355 | None:intergenic | 30.0% | |
| TTTGATTACTGATGACTTCA+TGG | + | chr3_2:4612512-4612531 | Msa0391780:intron | 30.0% | |
| GATCATTGTTAATTAAAGGC+TGG | + | chr3_2:4612534-4612553 | Msa0391780:intron | 30.0% | |
| ! | TTGCACTAGTTTGTAGAAAA+TGG | + | chr3_2:4612590-4612609 | Msa0391780:intron | 30.0% |
| TACAACTAAAGACTTGCATA+TGG | + | chr3_2:4612630-4612649 | Msa0391780:intron | 30.0% | |
| ACAACTAAAGACTTGCATAT+GGG | + | chr3_2:4612631-4612650 | Msa0391780:intron | 30.0% | |
| TAAACCTATATATCCCCTAA+AGG | + | chr3_2:4612739-4612758 | Msa0391780:intron | 30.0% | |
| AGATTGAGAAAATAGCTCAA+GGG | - | chr3_2:4612852-4612871 | None:intergenic | 30.0% | |
| AACATGAGAAATTTGTGGTA+GGG | - | chr3_2:4613051-4613070 | None:intergenic | 30.0% | |
| GTGATTACGAAGAAAAATTG+TGG | - | chr3_2:4613084-4613103 | None:intergenic | 30.0% | |
| TAAAAAACAATAAAGGGTGG+TGG | - | chr3_2:4613177-4613196 | None:intergenic | 30.0% | |
| TGGAGAATATACAATGTATG+TGG | + | chr3_2:4613249-4613268 | Msa0391780:CDS | 30.0% | |
| ATATACAATGTATGTGGATC+AGG | + | chr3_2:4613255-4613274 | Msa0391780:CDS | 30.0% | |
| !!! | ATACGCACGTTTTTTAAAAG+AGG | - | chr3_2:4611271-4611290 | None:intergenic | 30.0% |
| AGGAAAACCCTGATTATATA+GGG | - | chr3_2:4611351-4611370 | None:intergenic | 30.0% | |
| TAGGAAAACCCTGATTATAT+AGG | - | chr3_2:4611352-4611371 | None:intergenic | 30.0% | |
| ATTTCTTCCACAAGTTTCAA+CGG | - | chr3_2:4611555-4611574 | None:intergenic | 30.0% | |
| CAATCAAATCGTAAGTGTAT+AGG | - | chr3_2:4612013-4612032 | None:intergenic | 30.0% | |
| AGCAGATATATTTAACCCTT+GGG | + | chr3_2:4612112-4612131 | Msa0391780:intron | 30.0% | |
| ! | TTTTTCCTAGATTTTCCCAA+GGG | - | chr3_2:4612130-4612149 | None:intergenic | 30.0% |
| GTTACTTACATATATAGCCT+AGG | + | chr3_2:4612159-4612178 | Msa0391780:intron | 30.0% | |
| !!! | TGATAGGTAACTTTTTTTCC+TGG | - | chr3_2:4612320-4612339 | None:intergenic | 30.0% |
| AAAGTTACCTATCATAGCTT+TGG | + | chr3_2:4612326-4612345 | Msa0391780:intron | 30.0% | |
| ATCATATCCAAAGCTATGAT+AGG | - | chr3_2:4612336-4612355 | None:intergenic | 30.0% | |
| TTTGATTACTGATGACTTCA+TGG | + | chr3_2:4612512-4612531 | Msa0391780:intron | 30.0% | |
| GATCATTGTTAATTAAAGGC+TGG | + | chr3_2:4612534-4612553 | Msa0391780:intron | 30.0% | |
| ! | TTGCACTAGTTTGTAGAAAA+TGG | + | chr3_2:4612590-4612609 | Msa0391780:intron | 30.0% |
| TACAACTAAAGACTTGCATA+TGG | + | chr3_2:4612630-4612649 | Msa0391780:intron | 30.0% | |
| ACAACTAAAGACTTGCATAT+GGG | + | chr3_2:4612631-4612650 | Msa0391780:intron | 30.0% | |
| TAAACCTATATATCCCCTAA+AGG | + | chr3_2:4612739-4612758 | Msa0391780:intron | 30.0% | |
| AGATTGAGAAAATAGCTCAA+GGG | - | chr3_2:4612852-4612871 | None:intergenic | 30.0% | |
| AACATGAGAAATTTGTGGTA+GGG | - | chr3_2:4613051-4613070 | None:intergenic | 30.0% | |
| GTGATTACGAAGAAAAATTG+TGG | - | chr3_2:4613084-4613103 | None:intergenic | 30.0% | |
| TAAAAAACAATAAAGGGTGG+TGG | - | chr3_2:4613177-4613196 | None:intergenic | 30.0% | |
| TGGAGAATATACAATGTATG+TGG | + | chr3_2:4613249-4613268 | Msa0391780:CDS | 30.0% | |
| ATATACAATGTATGTGGATC+AGG | + | chr3_2:4613255-4613274 | Msa0391780:CDS | 30.0% | |
| GATACTTTATACGGGATACA+CGG | - | chr3_2:4611329-4611348 | None:intergenic | 35.0% | |
| ! | CAGGGTTTTCCTATTTTCTT+TGG | + | chr3_2:4611359-4611378 | Msa0391780:intron | 35.0% |
| !! | AAGAGTTGGTAGTGATGTTA+GGG | - | chr3_2:4611532-4611551 | None:intergenic | 35.0% |
| TTTGTTCCCTTGACAATAGA+GGG | - | chr3_2:4611686-4611705 | None:intergenic | 35.0% | |
| ! | TTTTGTTCCCTTGACAATAG+AGG | - | chr3_2:4611687-4611706 | None:intergenic | 35.0% |
| CATGCTTCAGTGAAGTATAA+GGG | - | chr3_2:4611718-4611737 | None:intergenic | 35.0% | |
| AAATATATCTGCTCTTCCGA+TGG | - | chr3_2:4612105-4612124 | None:intergenic | 35.0% | |
| GAGCAGATATATTTAACCCT+TGG | + | chr3_2:4612111-4612130 | Msa0391780:intron | 35.0% | |
| TTTAACCCTTGGGAAAATCT+AGG | + | chr3_2:4612122-4612141 | Msa0391780:intron | 35.0% | |
| ! | CTTTTTCCTAGATTTTCCCA+AGG | - | chr3_2:4612131-4612150 | None:intergenic | 35.0% |
| ! | TAGAGTACTATTTGACCCTT+TGG | + | chr3_2:4612289-4612308 | Msa0391780:intron | 35.0% |
| ! | AGAGTACTATTTGACCCTTT+GGG | + | chr3_2:4612290-4612309 | Msa0391780:intron | 35.0% |
| ! | TTTTTCCTGGATTTCCCAAA+GGG | - | chr3_2:4612307-4612326 | None:intergenic | 35.0% |
| !!! | TTTTTTCCTGGATTTCCCAA+AGG | - | chr3_2:4612308-4612327 | None:intergenic | 35.0% |
| AAAACTTAGTGTCCATACGT+AGG | + | chr3_2:4612412-4612431 | Msa0391780:intron | 35.0% | |
| AAACTTAGTGTCCATACGTA+GGG | + | chr3_2:4612413-4612432 | Msa0391780:intron | 35.0% | |
| CATTGTTAATTAAAGGCTGG+TGG | + | chr3_2:4612537-4612556 | Msa0391780:intron | 35.0% | |
| !! | GGAGTTTTTGCTATAGGAAT+AGG | + | chr3_2:4612659-4612678 | Msa0391780:intron | 35.0% |
| TGAAGTCGTTCAAATGTGAA+TGG | - | chr3_2:4612701-4612720 | None:intergenic | 35.0% | |
| TTTGAATGCAGCATCCTTTA+GGG | - | chr3_2:4612756-4612775 | None:intergenic | 35.0% | |
| ! | TTTTGAATGCAGCATCCTTT+AGG | - | chr3_2:4612757-4612776 | None:intergenic | 35.0% |
| TTGACACCTATGACTTCTTT+AGG | - | chr3_2:4612804-4612823 | None:intergenic | 35.0% | |
| AGAAGTCATAGGTGTCAATT+TGG | + | chr3_2:4612806-4612825 | Msa0391780:intron | 35.0% | |
| ! | TCAATTTGGTGAACTAGCTA+GGG | + | chr3_2:4612820-4612839 | Msa0391780:intron | 35.0% |
| CAGATTGAGAAAATAGCTCA+AGG | - | chr3_2:4612853-4612872 | None:intergenic | 35.0% | |
| AAAATACCCATGCCACATAA+GGG | - | chr3_2:4612944-4612963 | None:intergenic | 35.0% | |
| AAAAATACCCATGCCACATA+AGG | - | chr3_2:4612945-4612964 | None:intergenic | 35.0% | |
| GAACATGAGAAATTTGTGGT+AGG | - | chr3_2:4613052-4613071 | None:intergenic | 35.0% | |
| GAAGGAACATGAGAAATTTG+TGG | - | chr3_2:4613056-4613075 | None:intergenic | 35.0% | |
| AGAAAAATTGTGGGTTTGGA+AGG | - | chr3_2:4613074-4613093 | None:intergenic | 35.0% | |
| ACGAAGAAAAATTGTGGGTT+TGG | - | chr3_2:4613078-4613097 | None:intergenic | 35.0% | |
| AAGTAGCTTGAAGTTGAAGA+GGG | - | chr3_2:4613121-4613140 | None:intergenic | 35.0% | |
| CTTCTTCTTCCTTTCAATTC+AGG | + | chr3_2:4613147-4613166 | Msa0391780:intron | 35.0% | |
| GATACTTTATACGGGATACA+CGG | - | chr3_2:4611329-4611348 | None:intergenic | 35.0% | |
| ! | CAGGGTTTTCCTATTTTCTT+TGG | + | chr3_2:4611359-4611378 | Msa0391780:intron | 35.0% |
| !! | AAGAGTTGGTAGTGATGTTA+GGG | - | chr3_2:4611532-4611551 | None:intergenic | 35.0% |
| TTTGTTCCCTTGACAATAGA+GGG | - | chr3_2:4611686-4611705 | None:intergenic | 35.0% | |
| ! | TTTTGTTCCCTTGACAATAG+AGG | - | chr3_2:4611687-4611706 | None:intergenic | 35.0% |
| CATGCTTCAGTGAAGTATAA+GGG | - | chr3_2:4611718-4611737 | None:intergenic | 35.0% | |
| AAATATATCTGCTCTTCCGA+TGG | - | chr3_2:4612105-4612124 | None:intergenic | 35.0% | |
| GAGCAGATATATTTAACCCT+TGG | + | chr3_2:4612111-4612130 | Msa0391780:intron | 35.0% | |
| TTTAACCCTTGGGAAAATCT+AGG | + | chr3_2:4612122-4612141 | Msa0391780:intron | 35.0% | |
| ! | CTTTTTCCTAGATTTTCCCA+AGG | - | chr3_2:4612131-4612150 | None:intergenic | 35.0% |
| ! | TAGAGTACTATTTGACCCTT+TGG | + | chr3_2:4612289-4612308 | Msa0391780:intron | 35.0% |
| ! | AGAGTACTATTTGACCCTTT+GGG | + | chr3_2:4612290-4612309 | Msa0391780:intron | 35.0% |
| ! | TTTTTCCTGGATTTCCCAAA+GGG | - | chr3_2:4612307-4612326 | None:intergenic | 35.0% |
| !!! | TTTTTTCCTGGATTTCCCAA+AGG | - | chr3_2:4612308-4612327 | None:intergenic | 35.0% |
| AAAACTTAGTGTCCATACGT+AGG | + | chr3_2:4612412-4612431 | Msa0391780:intron | 35.0% | |
| AAACTTAGTGTCCATACGTA+GGG | + | chr3_2:4612413-4612432 | Msa0391780:intron | 35.0% | |
| CATTGTTAATTAAAGGCTGG+TGG | + | chr3_2:4612537-4612556 | Msa0391780:intron | 35.0% | |
| !! | GGAGTTTTTGCTATAGGAAT+AGG | + | chr3_2:4612659-4612678 | Msa0391780:intron | 35.0% |
| TGAAGTCGTTCAAATGTGAA+TGG | - | chr3_2:4612701-4612720 | None:intergenic | 35.0% | |
| TTTGAATGCAGCATCCTTTA+GGG | - | chr3_2:4612756-4612775 | None:intergenic | 35.0% | |
| ! | TTTTGAATGCAGCATCCTTT+AGG | - | chr3_2:4612757-4612776 | None:intergenic | 35.0% |
| TTGACACCTATGACTTCTTT+AGG | - | chr3_2:4612804-4612823 | None:intergenic | 35.0% | |
| AGAAGTCATAGGTGTCAATT+TGG | + | chr3_2:4612806-4612825 | Msa0391780:intron | 35.0% | |
| ! | TCAATTTGGTGAACTAGCTA+GGG | + | chr3_2:4612820-4612839 | Msa0391780:intron | 35.0% |
| CAGATTGAGAAAATAGCTCA+AGG | - | chr3_2:4612853-4612872 | None:intergenic | 35.0% | |
| AAAATACCCATGCCACATAA+GGG | - | chr3_2:4612944-4612963 | None:intergenic | 35.0% | |
| AAAAATACCCATGCCACATA+AGG | - | chr3_2:4612945-4612964 | None:intergenic | 35.0% | |
| GAACATGAGAAATTTGTGGT+AGG | - | chr3_2:4613052-4613071 | None:intergenic | 35.0% | |
| GAAGGAACATGAGAAATTTG+TGG | - | chr3_2:4613056-4613075 | None:intergenic | 35.0% | |
| AGAAAAATTGTGGGTTTGGA+AGG | - | chr3_2:4613074-4613093 | None:intergenic | 35.0% | |
| ACGAAGAAAAATTGTGGGTT+TGG | - | chr3_2:4613078-4613097 | None:intergenic | 35.0% | |
| AAGTAGCTTGAAGTTGAAGA+GGG | - | chr3_2:4613121-4613140 | None:intergenic | 35.0% | |
| CTTCTTCTTCCTTTCAATTC+AGG | + | chr3_2:4613147-4613166 | Msa0391780:intron | 35.0% | |
| TGTCGATGAAACAGCAACAT+CGG | - | chr3_2:4611484-4611503 | None:intergenic | 40.0% | |
| !! | TGTTGCTGTTTCATCGACAA+AGG | + | chr3_2:4611485-4611504 | Msa0391780:intron | 40.0% |
| !! | TGATGTTAGGGTTTTGGTAG+TGG | - | chr3_2:4611520-4611539 | None:intergenic | 40.0% |
| !! | TGGTAGTGATGTTAGGGTTT+TGG | - | chr3_2:4611526-4611545 | None:intergenic | 40.0% |
| !! | GAAGAGTTGGTAGTGATGTT+AGG | - | chr3_2:4611533-4611552 | None:intergenic | 40.0% |
| ACAAGTTTCAACGGAAGAGT+TGG | - | chr3_2:4611546-4611565 | None:intergenic | 40.0% | |
| AACTCTTCCGTTGAAACTTG+TGG | + | chr3_2:4611545-4611564 | Msa0391780:intron | 40.0% | |
| ! | AAGTTGAAGGAGTTGGTTCA+CGG | - | chr3_2:4611592-4611611 | None:intergenic | 40.0% |
| CAACTCCTTCAACTTAAACG+CGG | + | chr3_2:4611597-4611616 | Msa0391780:intron | 40.0% | |
| TTGTCAAGGGAACAAAACTC+AGG | + | chr3_2:4611690-4611709 | Msa0391780:intron | 40.0% | |
| CCATGCTTCAGTGAAGTATA+AGG | - | chr3_2:4611719-4611738 | None:intergenic | 40.0% | |
| CCTTATACTTCACTGAAGCA+TGG | + | chr3_2:4611716-4611735 | Msa0391780:intron | 40.0% | |
| ! | CGCTATGTTAGTGAAGTGTT+CGG | + | chr3_2:4611742-4611761 | Msa0391780:intron | 40.0% |
| ! | TTGATAAACGGTTTGCTCTG+TGG | + | chr3_2:4612069-4612088 | Msa0391780:intron | 40.0% |
| ! | AGGGTACTTGTTCTTAGAAG+AGG | + | chr3_2:4612265-4612284 | Msa0391780:intron | 40.0% |
| GGGTACTTGTTCTTAGAAGA+GGG | + | chr3_2:4612266-4612285 | Msa0391780:intron | 40.0% | |
| AACTTAGTGTCCATACGTAG+GGG | + | chr3_2:4612414-4612433 | Msa0391780:intron | 40.0% | |
| ! | GCATCCTTTAGGGGATATAT+AGG | - | chr3_2:4612746-4612765 | None:intergenic | 40.0% |
| TTGAATGCAGCATCCTTTAG+GGG | - | chr3_2:4612755-4612774 | None:intergenic | 40.0% | |
| CTATGACTTCTTTAGGTGGA+GGG | - | chr3_2:4612797-4612816 | None:intergenic | 40.0% | |
| ACACCTATGACTTCTTTAGG+TGG | - | chr3_2:4612801-4612820 | None:intergenic | 40.0% | |
| ! | GTCAATTTGGTGAACTAGCT+AGG | + | chr3_2:4612819-4612838 | Msa0391780:intron | 40.0% |
| AAATACCCATGCCACATAAG+GGG | - | chr3_2:4612943-4612962 | None:intergenic | 40.0% | |
| GAGATCTAAGAGAGAGAAGA+GGG | - | chr3_2:4612996-4613015 | None:intergenic | 40.0% | |
| AGAGTGAGAGGAAGAAGAAA+GGG | - | chr3_2:4613018-4613037 | None:intergenic | 40.0% | |
| GAAGTAGCTTGAAGTTGAAG+AGG | - | chr3_2:4613122-4613141 | None:intergenic | 40.0% | |
| !! | TGATTTCTAGCTGATGCAAC+TGG | + | chr3_2:4613229-4613248 | Msa0391780:intron | 40.0% |
| GTTATTCTCACCCGTTACAA+CGG | + | chr3_2:4613367-4613386 | Msa0391780:CDS | 40.0% | |
| TGCCAATGCTATGTTGTACA+TGG | + | chr3_2:4613411-4613430 | Msa0391780:CDS | 40.0% | |
| TGCCATGTACAACATAGCAT+TGG | - | chr3_2:4613416-4613435 | None:intergenic | 40.0% | |
| TGTCGATGAAACAGCAACAT+CGG | - | chr3_2:4611484-4611503 | None:intergenic | 40.0% | |
| !! | TGTTGCTGTTTCATCGACAA+AGG | + | chr3_2:4611485-4611504 | Msa0391780:intron | 40.0% |
| !! | TGATGTTAGGGTTTTGGTAG+TGG | - | chr3_2:4611520-4611539 | None:intergenic | 40.0% |
| !! | TGGTAGTGATGTTAGGGTTT+TGG | - | chr3_2:4611526-4611545 | None:intergenic | 40.0% |
| !! | GAAGAGTTGGTAGTGATGTT+AGG | - | chr3_2:4611533-4611552 | None:intergenic | 40.0% |
| ACAAGTTTCAACGGAAGAGT+TGG | - | chr3_2:4611546-4611565 | None:intergenic | 40.0% | |
| AACTCTTCCGTTGAAACTTG+TGG | + | chr3_2:4611545-4611564 | Msa0391780:intron | 40.0% | |
| ! | AAGTTGAAGGAGTTGGTTCA+CGG | - | chr3_2:4611592-4611611 | None:intergenic | 40.0% |
| CAACTCCTTCAACTTAAACG+CGG | + | chr3_2:4611597-4611616 | Msa0391780:intron | 40.0% | |
| TTGTCAAGGGAACAAAACTC+AGG | + | chr3_2:4611690-4611709 | Msa0391780:intron | 40.0% | |
| CCATGCTTCAGTGAAGTATA+AGG | - | chr3_2:4611719-4611738 | None:intergenic | 40.0% | |
| CCTTATACTTCACTGAAGCA+TGG | + | chr3_2:4611716-4611735 | Msa0391780:intron | 40.0% | |
| ! | CGCTATGTTAGTGAAGTGTT+CGG | + | chr3_2:4611742-4611761 | Msa0391780:intron | 40.0% |
| ! | TTGATAAACGGTTTGCTCTG+TGG | + | chr3_2:4612069-4612088 | Msa0391780:intron | 40.0% |
| ! | AGGGTACTTGTTCTTAGAAG+AGG | + | chr3_2:4612265-4612284 | Msa0391780:intron | 40.0% |
| GGGTACTTGTTCTTAGAAGA+GGG | + | chr3_2:4612266-4612285 | Msa0391780:intron | 40.0% | |
| AACTTAGTGTCCATACGTAG+GGG | + | chr3_2:4612414-4612433 | Msa0391780:intron | 40.0% | |
| ! | GCATCCTTTAGGGGATATAT+AGG | - | chr3_2:4612746-4612765 | None:intergenic | 40.0% |
| TTGAATGCAGCATCCTTTAG+GGG | - | chr3_2:4612755-4612774 | None:intergenic | 40.0% | |
| CTATGACTTCTTTAGGTGGA+GGG | - | chr3_2:4612797-4612816 | None:intergenic | 40.0% | |
| ACACCTATGACTTCTTTAGG+TGG | - | chr3_2:4612801-4612820 | None:intergenic | 40.0% | |
| ! | GTCAATTTGGTGAACTAGCT+AGG | + | chr3_2:4612819-4612838 | Msa0391780:intron | 40.0% |
| AAATACCCATGCCACATAAG+GGG | - | chr3_2:4612943-4612962 | None:intergenic | 40.0% | |
| GAGATCTAAGAGAGAGAAGA+GGG | - | chr3_2:4612996-4613015 | None:intergenic | 40.0% | |
| AGAGTGAGAGGAAGAAGAAA+GGG | - | chr3_2:4613018-4613037 | None:intergenic | 40.0% | |
| GAAGTAGCTTGAAGTTGAAG+AGG | - | chr3_2:4613122-4613141 | None:intergenic | 40.0% | |
| !! | TGATTTCTAGCTGATGCAAC+TGG | + | chr3_2:4613229-4613248 | Msa0391780:intron | 40.0% |
| GTTATTCTCACCCGTTACAA+CGG | + | chr3_2:4613367-4613386 | Msa0391780:CDS | 40.0% | |
| TGCCAATGCTATGTTGTACA+TGG | + | chr3_2:4613411-4613430 | Msa0391780:CDS | 40.0% | |
| TGCCATGTACAACATAGCAT+TGG | - | chr3_2:4613416-4613435 | None:intergenic | 40.0% | |
| ACGGGATACACGGTTAACTT+GGG | - | chr3_2:4611319-4611338 | None:intergenic | 45.0% | |
| TACGGGATACACGGTTAACT+TGG | - | chr3_2:4611320-4611339 | None:intergenic | 45.0% | |
| ! | CGCTCTAAACATTCAGAACG+AGG | + | chr3_2:4611438-4611457 | Msa0391780:intron | 45.0% |
| ACATTCAGAACGAGGTAGCA+TGG | + | chr3_2:4611446-4611465 | Msa0391780:intron | 45.0% | |
| CATTCAGAACGAGGTAGCAT+GGG | + | chr3_2:4611447-4611466 | Msa0391780:intron | 45.0% | |
| !! | TGCTGTTTCATCGACAAAGG+AGG | + | chr3_2:4611488-4611507 | Msa0391780:intron | 45.0% |
| !!! | TGTTAGGGTTTTGGTAGTGG+TGG | - | chr3_2:4611517-4611536 | None:intergenic | 45.0% |
| ! | AGTTGAAGGAGTTGGTTCAC+GGG | - | chr3_2:4611591-4611610 | None:intergenic | 45.0% |
| !! | CGCGTTTAAGTTGAAGGAGT+TGG | - | chr3_2:4611599-4611618 | None:intergenic | 45.0% |
| !! | TGCATCCGCGTTTAAGTTGA+AGG | - | chr3_2:4611605-4611624 | None:intergenic | 45.0% |
| TTAAACGCGGATGCAAGTCA+TGG | + | chr3_2:4611610-4611629 | Msa0391780:intron | 45.0% | |
| GCAGTTGAGAATGTGCTTCT+TGG | - | chr3_2:4611664-4611683 | None:intergenic | 45.0% | |
| TCAACTGCCCTCTATTGTCA+AGG | + | chr3_2:4611676-4611695 | Msa0391780:intron | 45.0% | |
| CAACTGCCCTCTATTGTCAA+GGG | + | chr3_2:4611677-4611696 | Msa0391780:intron | 45.0% | |
| ! | ATAAACGGTTTGCTCTGTGG+TGG | + | chr3_2:4612072-4612091 | Msa0391780:intron | 45.0% |
| TATCTGCTCTTCCGATGGAA+GGG | - | chr3_2:4612100-4612119 | None:intergenic | 45.0% | |
| ATATCTGCTCTTCCGATGGA+AGG | - | chr3_2:4612101-4612120 | None:intergenic | 45.0% | |
| ! | TTTGACCCTTTGGGAAATCC+AGG | + | chr3_2:4612299-4612318 | Msa0391780:intron | 45.0% |
| AAAGACTTGCATATGGGAGC+AGG | + | chr3_2:4612637-4612656 | Msa0391780:intron | 45.0% | |
| AAGACTTGCATATGGGAGCA+GGG | + | chr3_2:4612638-4612657 | Msa0391780:intron | 45.0% | |
| !! | GAGCAGGGAGTTTTTGCTAT+AGG | + | chr3_2:4612653-4612672 | Msa0391780:intron | 45.0% |
| CCTATGACTTCTTTAGGTGG+AGG | - | chr3_2:4612798-4612817 | None:intergenic | 45.0% | |
| CCTCCACCTAAAGAAGTCAT+AGG | + | chr3_2:4612795-4612814 | Msa0391780:intron | 45.0% | |
| TGGAAGAGTGGTATGGAGAA+GGG | - | chr3_2:4612916-4612935 | None:intergenic | 45.0% | |
| ATGGAAGAGTGGTATGGAGA+AGG | - | chr3_2:4612917-4612936 | None:intergenic | 45.0% | |
| ! | ATAAGGGGTGTATGGAAGAG+TGG | - | chr3_2:4612928-4612947 | None:intergenic | 45.0% |
| TCTTCCATACACCCCTTATG+TGG | + | chr3_2:4612929-4612948 | Msa0391780:intron | 45.0% | |
| ATACACCCCTTATGTGGCAT+GGG | + | chr3_2:4612935-4612954 | Msa0391780:intron | 45.0% | |
| GGAGATCTAAGAGAGAGAAG+AGG | - | chr3_2:4612997-4613016 | None:intergenic | 45.0% | |
| CAGAGTGAGAGGAAGAAGAA+AGG | - | chr3_2:4613019-4613038 | None:intergenic | 45.0% | |
| AATTTGTGGTAGGGAGTGAG+AGG | - | chr3_2:4613042-4613061 | None:intergenic | 45.0% | |
| GGTGGTGTACCTGAATTGAA+AGG | - | chr3_2:4613159-4613178 | None:intergenic | 45.0% | |
| ATTGGCAAACCTGTCATTGG+AGG | - | chr3_2:4613398-4613417 | None:intergenic | 45.0% | |
| !! | AGCATTGGCAAACCTGTCAT+TGG | - | chr3_2:4613401-4613420 | None:intergenic | 45.0% |
| TGCTATGTTGTACATGGCAG+AGG | + | chr3_2:4613417-4613436 | Msa0391780:CDS | 45.0% | |
| TATGTTGTACATGGCAGAGG+AGG | + | chr3_2:4613420-4613439 | Msa0391780:CDS | 45.0% | |
| CCAATTCCTGCATTTGCTTG+AGG | - | chr3_2:4613468-4613487 | None:intergenic | 45.0% | |
| CCTCAAGCAAATGCAGGAAT+TGG | + | chr3_2:4613465-4613484 | Msa0391780:CDS | 45.0% | |
| ACGGGATACACGGTTAACTT+GGG | - | chr3_2:4611319-4611338 | None:intergenic | 45.0% | |
| TACGGGATACACGGTTAACT+TGG | - | chr3_2:4611320-4611339 | None:intergenic | 45.0% | |
| ! | CGCTCTAAACATTCAGAACG+AGG | + | chr3_2:4611438-4611457 | Msa0391780:intron | 45.0% |
| ACATTCAGAACGAGGTAGCA+TGG | + | chr3_2:4611446-4611465 | Msa0391780:intron | 45.0% | |
| CATTCAGAACGAGGTAGCAT+GGG | + | chr3_2:4611447-4611466 | Msa0391780:intron | 45.0% | |
| !! | TGCTGTTTCATCGACAAAGG+AGG | + | chr3_2:4611488-4611507 | Msa0391780:intron | 45.0% |
| !!! | TGTTAGGGTTTTGGTAGTGG+TGG | - | chr3_2:4611517-4611536 | None:intergenic | 45.0% |
| ! | AGTTGAAGGAGTTGGTTCAC+GGG | - | chr3_2:4611591-4611610 | None:intergenic | 45.0% |
| !! | CGCGTTTAAGTTGAAGGAGT+TGG | - | chr3_2:4611599-4611618 | None:intergenic | 45.0% |
| !! | TGCATCCGCGTTTAAGTTGA+AGG | - | chr3_2:4611605-4611624 | None:intergenic | 45.0% |
| TTAAACGCGGATGCAAGTCA+TGG | + | chr3_2:4611610-4611629 | Msa0391780:intron | 45.0% | |
| GCAGTTGAGAATGTGCTTCT+TGG | - | chr3_2:4611664-4611683 | None:intergenic | 45.0% | |
| TCAACTGCCCTCTATTGTCA+AGG | + | chr3_2:4611676-4611695 | Msa0391780:intron | 45.0% | |
| CAACTGCCCTCTATTGTCAA+GGG | + | chr3_2:4611677-4611696 | Msa0391780:intron | 45.0% | |
| ! | ATAAACGGTTTGCTCTGTGG+TGG | + | chr3_2:4612072-4612091 | Msa0391780:intron | 45.0% |
| TATCTGCTCTTCCGATGGAA+GGG | - | chr3_2:4612100-4612119 | None:intergenic | 45.0% | |
| ATATCTGCTCTTCCGATGGA+AGG | - | chr3_2:4612101-4612120 | None:intergenic | 45.0% | |
| ! | TTTGACCCTTTGGGAAATCC+AGG | + | chr3_2:4612299-4612318 | Msa0391780:intron | 45.0% |
| AAAGACTTGCATATGGGAGC+AGG | + | chr3_2:4612637-4612656 | Msa0391780:intron | 45.0% | |
| AAGACTTGCATATGGGAGCA+GGG | + | chr3_2:4612638-4612657 | Msa0391780:intron | 45.0% | |
| !! | GAGCAGGGAGTTTTTGCTAT+AGG | + | chr3_2:4612653-4612672 | Msa0391780:intron | 45.0% |
| CCTATGACTTCTTTAGGTGG+AGG | - | chr3_2:4612798-4612817 | None:intergenic | 45.0% | |
| CCTCCACCTAAAGAAGTCAT+AGG | + | chr3_2:4612795-4612814 | Msa0391780:intron | 45.0% | |
| TGGAAGAGTGGTATGGAGAA+GGG | - | chr3_2:4612916-4612935 | None:intergenic | 45.0% | |
| ATGGAAGAGTGGTATGGAGA+AGG | - | chr3_2:4612917-4612936 | None:intergenic | 45.0% | |
| ! | ATAAGGGGTGTATGGAAGAG+TGG | - | chr3_2:4612928-4612947 | None:intergenic | 45.0% |
| TCTTCCATACACCCCTTATG+TGG | + | chr3_2:4612929-4612948 | Msa0391780:intron | 45.0% | |
| ATACACCCCTTATGTGGCAT+GGG | + | chr3_2:4612935-4612954 | Msa0391780:intron | 45.0% | |
| GGAGATCTAAGAGAGAGAAG+AGG | - | chr3_2:4612997-4613016 | None:intergenic | 45.0% | |
| CAGAGTGAGAGGAAGAAGAA+AGG | - | chr3_2:4613019-4613038 | None:intergenic | 45.0% | |
| AATTTGTGGTAGGGAGTGAG+AGG | - | chr3_2:4613042-4613061 | None:intergenic | 45.0% | |
| GGTGGTGTACCTGAATTGAA+AGG | - | chr3_2:4613159-4613178 | None:intergenic | 45.0% | |
| ATTGGCAAACCTGTCATTGG+AGG | - | chr3_2:4613398-4613417 | None:intergenic | 45.0% | |
| !! | AGCATTGGCAAACCTGTCAT+TGG | - | chr3_2:4613401-4613420 | None:intergenic | 45.0% |
| TGCTATGTTGTACATGGCAG+AGG | + | chr3_2:4613417-4613436 | Msa0391780:CDS | 45.0% | |
| TATGTTGTACATGGCAGAGG+AGG | + | chr3_2:4613420-4613439 | Msa0391780:CDS | 45.0% | |
| CCAATTCCTGCATTTGCTTG+AGG | - | chr3_2:4613468-4613487 | None:intergenic | 45.0% | |
| CCTCAAGCAAATGCAGGAAT+TGG | + | chr3_2:4613465-4613484 | Msa0391780:CDS | 45.0% | |
| ! | CGGGATACACGGTTAACTTG+GGG | - | chr3_2:4611318-4611337 | None:intergenic | 50.0% |
| AAACAGCAACATCGGATCCC+CGG | - | chr3_2:4611476-4611495 | None:intergenic | 50.0% | |
| CATTGCATAGCCCCTACGTA+TGG | - | chr3_2:4612427-4612446 | None:intergenic | 50.0% | |
| TTAGGTGGAGGGTGAAGATG+AGG | - | chr3_2:4612786-4612805 | None:intergenic | 50.0% | |
| GGGTGTATGGAAGAGTGGTA+TGG | - | chr3_2:4612923-4612942 | None:intergenic | 50.0% | |
| ! | CATGCCACATAAGGGGTGTA+TGG | - | chr3_2:4612936-4612955 | None:intergenic | 50.0% |
| CATACACCCCTTATGTGGCA+TGG | + | chr3_2:4612934-4612953 | Msa0391780:intron | 50.0% | |
| GAAGAGGGCGAAGAAAGTTG+TGG | - | chr3_2:4613106-4613125 | None:intergenic | 50.0% | |
| CTTTCGCTACAACTACGCTC+AGG | - | chr3_2:4613322-4613341 | None:intergenic | 50.0% | |
| !! | AGTTGTAGCGAAAGAGCACC+TGG | + | chr3_2:4613328-4613347 | Msa0391780:CDS | 50.0% |
| !! | GTTGTAGCGAAAGAGCACCT+GGG | + | chr3_2:4613329-4613348 | Msa0391780:CDS | 50.0% |
| TGGAGGCAATGCCGTTGTAA+CGG | - | chr3_2:4613381-4613400 | None:intergenic | 50.0% | |
| TGAGGTCCTCAAGCAAATGC+AGG | + | chr3_2:4613459-4613478 | Msa0391780:CDS | 50.0% | |
| ! | CGGGATACACGGTTAACTTG+GGG | - | chr3_2:4611318-4611337 | None:intergenic | 50.0% |
| AAACAGCAACATCGGATCCC+CGG | - | chr3_2:4611476-4611495 | None:intergenic | 50.0% | |
| CATTGCATAGCCCCTACGTA+TGG | - | chr3_2:4612427-4612446 | None:intergenic | 50.0% | |
| TTAGGTGGAGGGTGAAGATG+AGG | - | chr3_2:4612786-4612805 | None:intergenic | 50.0% | |
| GGGTGTATGGAAGAGTGGTA+TGG | - | chr3_2:4612923-4612942 | None:intergenic | 50.0% | |
| ! | CATGCCACATAAGGGGTGTA+TGG | - | chr3_2:4612936-4612955 | None:intergenic | 50.0% |
| CATACACCCCTTATGTGGCA+TGG | + | chr3_2:4612934-4612953 | Msa0391780:intron | 50.0% | |
| GAAGAGGGCGAAGAAAGTTG+TGG | - | chr3_2:4613106-4613125 | None:intergenic | 50.0% | |
| CTTTCGCTACAACTACGCTC+AGG | - | chr3_2:4613322-4613341 | None:intergenic | 50.0% | |
| !! | AGTTGTAGCGAAAGAGCACC+TGG | + | chr3_2:4613328-4613347 | Msa0391780:CDS | 50.0% |
| !! | GTTGTAGCGAAAGAGCACCT+GGG | + | chr3_2:4613329-4613348 | Msa0391780:CDS | 50.0% |
| TGGAGGCAATGCCGTTGTAA+CGG | - | chr3_2:4613381-4613400 | None:intergenic | 50.0% | |
| TGAGGTCCTCAAGCAAATGC+AGG | + | chr3_2:4613459-4613478 | Msa0391780:CDS | 50.0% | |
| AACGAGGTAGCATGGGCAAC+CGG | + | chr3_2:4611454-4611473 | Msa0391780:intron | 55.0% | |
| GGTTCACGGGTAGTCTAAGC+AGG | - | chr3_2:4611578-4611597 | None:intergenic | 55.0% | |
| ! | CTGTGGTGGAACCCTTCCAT+CGG | + | chr3_2:4612086-4612105 | Msa0391780:intron | 55.0% |
| GGGTGAGAATAACGCGTGCT+TGG | - | chr3_2:4613360-4613379 | None:intergenic | 55.0% | |
| GGAGGCAATGCCGTTGTAAC+GGG | - | chr3_2:4613380-4613399 | None:intergenic | 55.0% | |
| ACGGCATTGCCTCCAATGAC+AGG | + | chr3_2:4613386-4613405 | Msa0391780:CDS | 55.0% | |
| ! | GGTTGCTTCTAGCTGTGCTG+AGG | + | chr3_2:4613441-4613460 | Msa0391780:CDS | 55.0% |
| AACGAGGTAGCATGGGCAAC+CGG | + | chr3_2:4611454-4611473 | Msa0391780:intron | 55.0% | |
| GGTTCACGGGTAGTCTAAGC+AGG | - | chr3_2:4611578-4611597 | None:intergenic | 55.0% | |
| ! | CTGTGGTGGAACCCTTCCAT+CGG | + | chr3_2:4612086-4612105 | Msa0391780:intron | 55.0% |
| GGGTGAGAATAACGCGTGCT+TGG | - | chr3_2:4613360-4613379 | None:intergenic | 55.0% | |
| GGAGGCAATGCCGTTGTAAC+GGG | - | chr3_2:4613380-4613399 | None:intergenic | 55.0% | |
| ACGGCATTGCCTCCAATGAC+AGG | + | chr3_2:4613386-4613405 | Msa0391780:CDS | 55.0% | |
| ! | GGTTGCTTCTAGCTGTGCTG+AGG | + | chr3_2:4613441-4613460 | Msa0391780:CDS | 55.0% |
| ACGAGGTAGCATGGGCAACC+GGG | + | chr3_2:4611455-4611474 | Msa0391780:intron | 60.0% | |
| GGAGTGAGAGGCAGAGTGAG+AGG | - | chr3_2:4613030-4613049 | None:intergenic | 60.0% | |
| ACGAGGTAGCATGGGCAACC+GGG | + | chr3_2:4611455-4611474 | Msa0391780:intron | 60.0% | |
| GGAGTGAGAGGCAGAGTGAG+AGG | - | chr3_2:4613030-4613049 | None:intergenic | 60.0% | |
| CGAGGTAGCATGGGCAACCG+GGG | + | chr3_2:4611456-4611475 | Msa0391780:intron | 65.0% | |
| CGAGGTAGCATGGGCAACCG+GGG | + | chr3_2:4611456-4611475 | Msa0391780:intron | 65.0% | |
| ACGCGTGCTTGGTCACGCCC+AGG | - | chr3_2:4613349-4613368 | None:intergenic | 70.0% | |
| ACGCGTGCTTGGTCACGCCC+AGG | - | chr3_2:4613349-4613368 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 4611232 | 4613501 | 4611232 | ID=Msa0391780;Name=Msa0391780 |
| chr3_2 | mRNA | 4611232 | 4613501 | 4611232 | ID=Msa0391780-mRNA-1;Parent=Msa0391780;Name=Msa0391780-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0|0|0|0.5|1|1|2|0|88 |
| chr3_2 | exon | 4611232 | 4611235 | 4611232 | ID=Msa0391780-mRNA-1:exon:1083;Parent=Msa0391780-mRNA-1 |
| chr3_2 | exon | 4613239 | 4613501 | 4613239 | ID=Msa0391780-mRNA-1:exon:1084;Parent=Msa0391780-mRNA-1 |
| chr3_2 | CDS | 4611232 | 4611235 | 4611232 | ID=Msa0391780-mRNA-1:cds;Parent=Msa0391780-mRNA-1 |
| chr3_2 | CDS | 4613239 | 4613501 | 4613239 | ID=Msa0391780-mRNA-1:cds;Parent=Msa0391780-mRNA-1 |
| Gene Sequence |
| Protein sequence |
