AlfalfaGEDB | Msa0346560

M. sativa cultivar zhongmu-4 / Msa0346560

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0346560	XP_013460852.1	90.698	86	8	0	3	88	77	162	2.21e-50	166

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0346560	sp\|Q9LX15\|DFC_ARATH	42.667	75	43	0	6	80	80	154	4.89e-13	63.5

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0346560	B7FN25	90.698	86	8	0	3	88	77	162	1.06e-50	166

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0345570	Msa0346560	0.884898	1.293178e-71	-8.615850e-47
Msa0346460	Msa0346560	0.876377	1.465685e-68	-8.615850e-47
Msa0346560	Msa0391720	0.899623	1.649993e-77	-8.615850e-47
Msa0346560	Msa0391780	0.895958	5.842971e-76	-8.615850e-47
Msa0346560	Msa0391840	0.904785	8.532875e-80	-8.615850e-47
Msa0346560	Msa0391880	0.900912	4.555190e-78	-8.615850e-47
Msa0346560	Msa0711830	0.806418	8.304629e-50	-8.615850e-47
Msa0346560	Msa0717890	0.803099	4.097329e-49	-8.615850e-47
Msa0346560	Msa0750240	0.805248	1.462872e-49	-8.615850e-47
Msa0346560	Msa0830510	0.800926	1.145882e-48	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0346560	MtrunA17_Chr3g0115561	90.698	86	8	0	3	88	77	162	2.03e-54	166
Msa0346560	MtrunA17_Chr3g0124301	35.802	81	50	2	1	79	72	152	2.13e-14	64.3
Msa0346560	MtrunA17_Chr2g0283801	37.349	83	49	1	2	81	75	157	1.27e-12	59.7

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0346560	AT4G08685.1	44.048	84	47	0	3	86	76	159	1.71e-22	85.5
Msa0346560	AT1G78040.1	40.230	87	51	1	1	87	78	163	1.60e-15	67.8
Msa0346560	AT1G78040.3	40.230	87	51	1	1	87	78	163	1.60e-15	67.8
Msa0346560	AT1G78040.2	40.230	87	51	1	1	87	78	163	1.60e-15	67.8
Msa0346560	AT5G10130.1	42.667	75	43	0	6	80	80	154	4.97e-14	63.5

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Find 22 sgRNAs with CRISPR-Local

Find 352 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
ACGCGTGCTTGGTCACGCCC+AGG	0.556503	3_1:+7115069	None:intergenic
ACGGCATTGCCTCCAATGAC+AGG	0.539090	3_1:-7115029	Msa0346560:CDS
AGCATTGGCAAACCTGTCAT+TGG	0.466304	3_1:+7115017	None:intergenic
AGTTGTAGCGAAAGAGCACC+TGG	0.442879	3_1:-7115087	Msa0346560:CDS
ATATACAATGTATGTGGATC+AGG	0.452269	3_1:-7115160	Msa0346560:CDS
ATTGGCAAACCTGTCATTGG+AGG	0.565263	3_1:+7115020	None:intergenic
CCAATTCCTGCATTTGCTTG+AGG	0.488555	3_1:+7114950	None:intergenic
CCTCAAGCAAATGCAGGAAT+TGG	0.399028	3_1:-7114950	Msa0346560:CDS
CTTTCGCTACAACTACGCTC+AGG	0.623193	3_1:+7115096	None:intergenic
GGAGGCAATGCCGTTGTAAC+GGG	0.439821	3_1:+7115038	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AGGAAAACCCTGATTATATA+GGG	+	chr3_1:7115055-7115074	None:intergenic	30.0%
TAGGAAAACCCTGATTATAT+AGG	+	chr3_1:7115056-7115075	None:intergenic	30.0%
ATTTCTTCCACAAGTTTCAA+CGG	+	chr3_1:7115259-7115278	None:intergenic	30.0%
CAATCAAATCGTAAGTGTAT+AGG	+	chr3_1:7115717-7115736	None:intergenic	30.0%
AGCAGATATATTTAACCCTT+GGG	-	chr3_1:7115816-7115835	Msa0346560:intron	30.0%
GTTACTTACATATATAGCCT+AGG	-	chr3_1:7115863-7115882	Msa0346560:intron	30.0%
AAAGTTACCTATCATAGCTT+TGG	-	chr3_1:7116030-7116049	Msa0346560:intron	30.0%
ATCATATCCAAAGCTATGAT+AGG	+	chr3_1:7116040-7116059	None:intergenic	30.0%
TTTGATTACTGATGACTTCA+TGG	-	chr3_1:7116216-7116235	Msa0346560:intron	30.0%
GATCATTGTTAATTAAAGGC+TGG	-	chr3_1:7116238-7116257	Msa0346560:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_1	gene	7114936	7117205	7114936	ID=Msa0346560;Name=Msa0346560
chr3_1	mRNA	7114936	7117205	7114936	ID=Msa0346560-mRNA-1;Parent=Msa0346560;Name=Msa0346560-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0\|0\|0\|0.5\|1\|1\|2\|0\|88
chr3_1	exon	7117202	7117205	7117202	ID=Msa0346560-mRNA-1:exon:2002;Parent=Msa0346560-mRNA-1
chr3_1	exon	7114936	7115198	7114936	ID=Msa0346560-mRNA-1:exon:2001;Parent=Msa0346560-mRNA-1
chr3_1	CDS	7117202	7117205	7117202	ID=Msa0346560-mRNA-1:cds;Parent=Msa0346560-mRNA-1
chr3_1	CDS	7114936	7115198	7114936	ID=Msa0346560-mRNA-1:cds;Parent=Msa0346560-mRNA-1

Gene Sequence	>Msa0346560 ATGGCTGATGCAACTGGAGAATATACAATGTATGTGGATCAGGATAGCGCAGATGAAATGTGTGATGTGAAGCTAATAAACAGTCCTGAGCGTAGTTGTAGCGAAAGAGCACCTGGGCGTGACCAAGCACGCGTTATTCTCACCCGTTACAACGGCATTGCCTCCAATGACAGGTTTGCCAATGCTATGTTGTACATGGCAGAGGAGGTTGCTTCTAGCTGTGCTGAGGTCCTCAAGCAAATGCAGGAATTGGATGAAGAGAATTAA
Protein sequence	>Msa0346560 MADATGEYTMYVDQDSADEMCDVKLINSPERSCSERAPGRDQARVILTRYNGIASNDRFANAMLYMAEEVASSCAEVLKQMQELDEEN*