Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0346560 | XP_013460852.1 | 90.698 | 86 | 8 | 0 | 3 | 88 | 77 | 162 | 2.21e-50 | 166 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0346560 | sp|Q9LX15|DFC_ARATH | 42.667 | 75 | 43 | 0 | 6 | 80 | 80 | 154 | 4.89e-13 | 63.5 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0346560 | B7FN25 | 90.698 | 86 | 8 | 0 | 3 | 88 | 77 | 162 | 1.06e-50 | 166 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0345570 | Msa0346560 | 0.884898 | 1.293178e-71 | -8.615850e-47 |
| Msa0346460 | Msa0346560 | 0.876377 | 1.465685e-68 | -8.615850e-47 |
| Msa0346560 | Msa0391720 | 0.899623 | 1.649993e-77 | -8.615850e-47 |
| Msa0346560 | Msa0391780 | 0.895958 | 5.842971e-76 | -8.615850e-47 |
| Msa0346560 | Msa0391840 | 0.904785 | 8.532875e-80 | -8.615850e-47 |
| Msa0346560 | Msa0391880 | 0.900912 | 4.555190e-78 | -8.615850e-47 |
| Msa0346560 | Msa0711830 | 0.806418 | 8.304629e-50 | -8.615850e-47 |
| Msa0346560 | Msa0717890 | 0.803099 | 4.097329e-49 | -8.615850e-47 |
| Msa0346560 | Msa0750240 | 0.805248 | 1.462872e-49 | -8.615850e-47 |
| Msa0346560 | Msa0830510 | 0.800926 | 1.145882e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0346560 | MtrunA17_Chr3g0115561 | 90.698 | 86 | 8 | 0 | 3 | 88 | 77 | 162 | 2.03e-54 | 166 |
| Msa0346560 | MtrunA17_Chr3g0124301 | 35.802 | 81 | 50 | 2 | 1 | 79 | 72 | 152 | 2.13e-14 | 64.3 |
| Msa0346560 | MtrunA17_Chr2g0283801 | 37.349 | 83 | 49 | 1 | 2 | 81 | 75 | 157 | 1.27e-12 | 59.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0346560 | AT4G08685.1 | 44.048 | 84 | 47 | 0 | 3 | 86 | 76 | 159 | 1.71e-22 | 85.5 |
| Msa0346560 | AT1G78040.1 | 40.230 | 87 | 51 | 1 | 1 | 87 | 78 | 163 | 1.60e-15 | 67.8 |
| Msa0346560 | AT1G78040.3 | 40.230 | 87 | 51 | 1 | 1 | 87 | 78 | 163 | 1.60e-15 | 67.8 |
| Msa0346560 | AT1G78040.2 | 40.230 | 87 | 51 | 1 | 1 | 87 | 78 | 163 | 1.60e-15 | 67.8 |
| Msa0346560 | AT5G10130.1 | 42.667 | 75 | 43 | 0 | 6 | 80 | 80 | 154 | 4.97e-14 | 63.5 |
Find 22 sgRNAs with CRISPR-Local
Find 352 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGATTTCTAGCTGATGCAAC+TGG | 0.377402 | 3_1:-7115186 | Msa0346560:intron |
| CCTCAAGCAAATGCAGGAAT+TGG | 0.399028 | 3_1:-7114950 | Msa0346560:CDS |
| GGAGGCAATGCCGTTGTAAC+GGG | 0.439821 | 3_1:+7115038 | None:intergenic |
| AGTTGTAGCGAAAGAGCACC+TGG | 0.442879 | 3_1:-7115087 | Msa0346560:CDS |
| ATATACAATGTATGTGGATC+AGG | 0.452269 | 3_1:-7115160 | Msa0346560:CDS |
| AGCATTGGCAAACCTGTCAT+TGG | 0.466304 | 3_1:+7115017 | None:intergenic |
| CCAATTCCTGCATTTGCTTG+AGG | 0.488555 | 3_1:+7114950 | None:intergenic |
| TGGAGGCAATGCCGTTGTAA+CGG | 0.522858 | 3_1:+7115037 | None:intergenic |
| GGGTGAGAATAACGCGTGCT+TGG | 0.527810 | 3_1:+7115058 | None:intergenic |
| ACGGCATTGCCTCCAATGAC+AGG | 0.539090 | 3_1:-7115029 | Msa0346560:CDS |
| TGCTATGTTGTACATGGCAG+AGG | 0.540527 | 3_1:-7114998 | Msa0346560:CDS |
| TGCCAATGCTATGTTGTACA+TGG | 0.550672 | 3_1:-7115004 | Msa0346560:CDS |
| TGGAGAATATACAATGTATG+TGG | 0.553534 | 3_1:-7115166 | Msa0346560:CDS |
| ACGCGTGCTTGGTCACGCCC+AGG | 0.556503 | 3_1:+7115069 | None:intergenic |
| ATTGGCAAACCTGTCATTGG+AGG | 0.565263 | 3_1:+7115020 | None:intergenic |
| TGCCATGTACAACATAGCAT+TGG | 0.582518 | 3_1:+7115002 | None:intergenic |
| GTTATTCTCACCCGTTACAA+CGG | 0.584831 | 3_1:-7115048 | Msa0346560:CDS |
| TGAGGTCCTCAAGCAAATGC+AGG | 0.587649 | 3_1:-7114956 | Msa0346560:CDS |
| GGTTGCTTCTAGCTGTGCTG+AGG | 0.620393 | 3_1:-7114974 | Msa0346560:CDS |
| CTTTCGCTACAACTACGCTC+AGG | 0.623193 | 3_1:+7115096 | None:intergenic |
| TATGTTGTACATGGCAGAGG+AGG | 0.691786 | 3_1:-7114995 | Msa0346560:CDS |
| GTTGTAGCGAAAGAGCACCT+GGG | 0.714138 | 3_1:-7115086 | Msa0346560:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CTAAATTATGTAAAAATAAA+CGG | + | chr3_1:7115476-7115495 | None:intergenic | 10.0% |
| !! | TTGTTATAAAAAACAATAAA+GGG | + | chr3_1:7116887-7116906 | None:intergenic | 10.0% |
| !! | AATAAAGAATAAAAATGAAA+GGG | + | chr3_1:7116910-7116929 | None:intergenic | 10.0% |
| !! | AAATAAAGAATAAAAATGAA+AGG | + | chr3_1:7116911-7116930 | None:intergenic | 10.0% |
| !! | CTAAATTATGTAAAAATAAA+CGG | + | chr3_1:7115476-7115495 | None:intergenic | 10.0% |
| !! | TTGTTATAAAAAACAATAAA+GGG | + | chr3_1:7116887-7116906 | None:intergenic | 10.0% |
| !! | AATAAAGAATAAAAATGAAA+GGG | + | chr3_1:7116910-7116929 | None:intergenic | 10.0% |
| !! | AAATAAAGAATAAAAATGAA+AGG | + | chr3_1:7116911-7116930 | None:intergenic | 10.0% |
| !! | AACAATAATAAAACCTAATT+TGG | + | chr3_1:7115091-7115110 | None:intergenic | 15.0% |
| !!! | TTATTGTTATTATTGTATCA+AGG | - | chr3_1:7115103-7115122 | Msa0346560:CDS | 15.0% |
| !! | TTAATGCAGTTATTTATTTA+TGG | - | chr3_1:7116577-7116596 | Msa0346560:intron | 15.0% |
| !! | ATTTATTTATGGAAAAAGAT+TGG | - | chr3_1:7116588-7116607 | Msa0346560:intron | 15.0% |
| !! | GTTGTTATAAAAAACAATAA+AGG | + | chr3_1:7116888-7116907 | None:intergenic | 15.0% |
| !! | AACAATAATAAAACCTAATT+TGG | + | chr3_1:7115091-7115110 | None:intergenic | 15.0% |
| !!! | TTATTGTTATTATTGTATCA+AGG | - | chr3_1:7115103-7115122 | Msa0346560:CDS | 15.0% |
| !! | TTAATGCAGTTATTTATTTA+TGG | - | chr3_1:7116577-7116596 | Msa0346560:intron | 15.0% |
| !! | ATTTATTTATGGAAAAAGAT+TGG | - | chr3_1:7116588-7116607 | Msa0346560:intron | 15.0% |
| !! | GTTGTTATAAAAAACAATAA+AGG | + | chr3_1:7116888-7116907 | None:intergenic | 15.0% |
| !!! | GTTTTTTAAAAGAGGATAAA+CGG | + | chr3_1:7114967-7114986 | None:intergenic | 20.0% |
| !! | TTATATAGGGATACTTTATA+CGG | + | chr3_1:7115042-7115061 | None:intergenic | 20.0% |
| !!! | AATGTTTCAGTATTGATAAA+CGG | - | chr3_1:7115761-7115780 | Msa0346560:intron | 20.0% |
| !! | TAATGAAAAAATCATATCCT+AGG | + | chr3_1:7115883-7115902 | None:intergenic | 20.0% |
| !! | TTATAAAAAACAATAAAGGG+TGG | + | chr3_1:7116884-7116903 | None:intergenic | 20.0% |
| !!! | GTTTTTTAAAAGAGGATAAA+CGG | + | chr3_1:7114967-7114986 | None:intergenic | 20.0% |
| !! | TTATATAGGGATACTTTATA+CGG | + | chr3_1:7115042-7115061 | None:intergenic | 20.0% |
| !!! | AATGTTTCAGTATTGATAAA+CGG | - | chr3_1:7115761-7115780 | Msa0346560:intron | 20.0% |
| !! | TAATGAAAAAATCATATCCT+AGG | + | chr3_1:7115883-7115902 | None:intergenic | 20.0% |
| !! | TTATAAAAAACAATAAAGGG+TGG | + | chr3_1:7116884-7116903 | None:intergenic | 20.0% |
| ! | TATATAGGGATACTTTATAC+GGG | + | chr3_1:7115041-7115060 | None:intergenic | 25.0% |
| !! | TAAAGTATCCCTATATAATC+AGG | - | chr3_1:7115044-7115063 | Msa0346560:CDS | 25.0% |
| !! | AAAGTATCCCTATATAATCA+GGG | - | chr3_1:7115045-7115064 | Msa0346560:CDS | 25.0% |
| !! | AATTTGGTTCCAAAGAAAAT+AGG | + | chr3_1:7115075-7115094 | None:intergenic | 25.0% |
| !!! | ATTTTCTTTGGAACCAAATT+AGG | - | chr3_1:7115075-7115094 | Msa0346560:CDS | 25.0% |
| ! | TTTAGTTGCAGTGAAATTTA+TGG | - | chr3_1:7115491-7115510 | Msa0346560:intron | 25.0% |
| ! | GTTTATCAATACTGAAACAT+TGG | + | chr3_1:7115762-7115781 | None:intergenic | 25.0% |
| ! | AGAAGTTAGTGTTCATATTT+AGG | - | chr3_1:7115949-7115968 | Msa0346560:intron | 25.0% |
| ! | GAAGTTAGTGTTCATATTTA+GGG | - | chr3_1:7115950-7115969 | Msa0346560:intron | 25.0% |
| ! | CATGGATCATTGTTAATTAA+AGG | - | chr3_1:7116234-7116253 | Msa0346560:intron | 25.0% |
| !! | TAGTTTGTAGAAAATGGAAA+AGG | - | chr3_1:7116300-7116319 | Msa0346560:intron | 25.0% |
| ! | AGTTTGTAGAAAATGGAAAA+GGG | - | chr3_1:7116301-7116320 | Msa0346560:intron | 25.0% |
| ! | TAGGAATAGGAATAACTTTA+CGG | - | chr3_1:7116376-7116395 | Msa0346560:intron | 25.0% |
| ! | TGATTACGAAGAAAAATTGT+GGG | + | chr3_1:7116787-7116806 | None:intergenic | 25.0% |
| ! | TATATAGGGATACTTTATAC+GGG | + | chr3_1:7115041-7115060 | None:intergenic | 25.0% |
| !! | TAAAGTATCCCTATATAATC+AGG | - | chr3_1:7115044-7115063 | Msa0346560:CDS | 25.0% |
| !! | AAAGTATCCCTATATAATCA+GGG | - | chr3_1:7115045-7115064 | Msa0346560:CDS | 25.0% |
| !! | AATTTGGTTCCAAAGAAAAT+AGG | + | chr3_1:7115075-7115094 | None:intergenic | 25.0% |
| !!! | ATTTTCTTTGGAACCAAATT+AGG | - | chr3_1:7115075-7115094 | Msa0346560:CDS | 25.0% |
| ! | TTTAGTTGCAGTGAAATTTA+TGG | - | chr3_1:7115491-7115510 | Msa0346560:intron | 25.0% |
| ! | GTTTATCAATACTGAAACAT+TGG | + | chr3_1:7115762-7115781 | None:intergenic | 25.0% |
| ! | AGAAGTTAGTGTTCATATTT+AGG | - | chr3_1:7115949-7115968 | Msa0346560:intron | 25.0% |
| ! | GAAGTTAGTGTTCATATTTA+GGG | - | chr3_1:7115950-7115969 | Msa0346560:intron | 25.0% |
| ! | CATGGATCATTGTTAATTAA+AGG | - | chr3_1:7116234-7116253 | Msa0346560:intron | 25.0% |
| !! | TAGTTTGTAGAAAATGGAAA+AGG | - | chr3_1:7116300-7116319 | Msa0346560:intron | 25.0% |
| ! | AGTTTGTAGAAAATGGAAAA+GGG | - | chr3_1:7116301-7116320 | Msa0346560:intron | 25.0% |
| ! | TAGGAATAGGAATAACTTTA+CGG | - | chr3_1:7116376-7116395 | Msa0346560:intron | 25.0% |
| ! | TGATTACGAAGAAAAATTGT+GGG | + | chr3_1:7116787-7116806 | None:intergenic | 25.0% |
| !!! | ATACGCACGTTTTTTAAAAG+AGG | + | chr3_1:7114975-7114994 | None:intergenic | 30.0% |
| AGGAAAACCCTGATTATATA+GGG | + | chr3_1:7115055-7115074 | None:intergenic | 30.0% | |
| TAGGAAAACCCTGATTATAT+AGG | + | chr3_1:7115056-7115075 | None:intergenic | 30.0% | |
| ATTTCTTCCACAAGTTTCAA+CGG | + | chr3_1:7115259-7115278 | None:intergenic | 30.0% | |
| CAATCAAATCGTAAGTGTAT+AGG | + | chr3_1:7115717-7115736 | None:intergenic | 30.0% | |
| AGCAGATATATTTAACCCTT+GGG | - | chr3_1:7115816-7115835 | Msa0346560:intron | 30.0% | |
| ! | TTTTTCCTAGATTTTCCCAA+GGG | + | chr3_1:7115834-7115853 | None:intergenic | 30.0% |
| GTTACTTACATATATAGCCT+AGG | - | chr3_1:7115863-7115882 | Msa0346560:intron | 30.0% | |
| !!! | TGATAGGTAACTTTTTTTCC+TGG | + | chr3_1:7116024-7116043 | None:intergenic | 30.0% |
| AAAGTTACCTATCATAGCTT+TGG | - | chr3_1:7116030-7116049 | Msa0346560:intron | 30.0% | |
| ATCATATCCAAAGCTATGAT+AGG | + | chr3_1:7116040-7116059 | None:intergenic | 30.0% | |
| TTTGATTACTGATGACTTCA+TGG | - | chr3_1:7116216-7116235 | Msa0346560:intron | 30.0% | |
| GATCATTGTTAATTAAAGGC+TGG | - | chr3_1:7116238-7116257 | Msa0346560:intron | 30.0% | |
| ! | TTGCACTAGTTTGTAGAAAA+TGG | - | chr3_1:7116294-7116313 | Msa0346560:intron | 30.0% |
| TACAACTAAAGACTTGCATA+TGG | - | chr3_1:7116334-7116353 | Msa0346560:intron | 30.0% | |
| ACAACTAAAGACTTGCATAT+GGG | - | chr3_1:7116335-7116354 | Msa0346560:intron | 30.0% | |
| TAAACCTATATATCCCCTAA+AGG | - | chr3_1:7116443-7116462 | Msa0346560:intron | 30.0% | |
| AGATTGAGAAAATAGCTCAA+GGG | + | chr3_1:7116556-7116575 | None:intergenic | 30.0% | |
| AACATGAGAAATTTGTGGTA+GGG | + | chr3_1:7116755-7116774 | None:intergenic | 30.0% | |
| GTGATTACGAAGAAAAATTG+TGG | + | chr3_1:7116788-7116807 | None:intergenic | 30.0% | |
| TAAAAAACAATAAAGGGTGG+TGG | + | chr3_1:7116881-7116900 | None:intergenic | 30.0% | |
| TGGAGAATATACAATGTATG+TGG | - | chr3_1:7116953-7116972 | Msa0346560:intron | 30.0% | |
| ATATACAATGTATGTGGATC+AGG | - | chr3_1:7116959-7116978 | Msa0346560:intron | 30.0% | |
| !!! | ATACGCACGTTTTTTAAAAG+AGG | + | chr3_1:7114975-7114994 | None:intergenic | 30.0% |
| AGGAAAACCCTGATTATATA+GGG | + | chr3_1:7115055-7115074 | None:intergenic | 30.0% | |
| TAGGAAAACCCTGATTATAT+AGG | + | chr3_1:7115056-7115075 | None:intergenic | 30.0% | |
| ATTTCTTCCACAAGTTTCAA+CGG | + | chr3_1:7115259-7115278 | None:intergenic | 30.0% | |
| CAATCAAATCGTAAGTGTAT+AGG | + | chr3_1:7115717-7115736 | None:intergenic | 30.0% | |
| AGCAGATATATTTAACCCTT+GGG | - | chr3_1:7115816-7115835 | Msa0346560:intron | 30.0% | |
| ! | TTTTTCCTAGATTTTCCCAA+GGG | + | chr3_1:7115834-7115853 | None:intergenic | 30.0% |
| GTTACTTACATATATAGCCT+AGG | - | chr3_1:7115863-7115882 | Msa0346560:intron | 30.0% | |
| !!! | TGATAGGTAACTTTTTTTCC+TGG | + | chr3_1:7116024-7116043 | None:intergenic | 30.0% |
| AAAGTTACCTATCATAGCTT+TGG | - | chr3_1:7116030-7116049 | Msa0346560:intron | 30.0% | |
| ATCATATCCAAAGCTATGAT+AGG | + | chr3_1:7116040-7116059 | None:intergenic | 30.0% | |
| TTTGATTACTGATGACTTCA+TGG | - | chr3_1:7116216-7116235 | Msa0346560:intron | 30.0% | |
| GATCATTGTTAATTAAAGGC+TGG | - | chr3_1:7116238-7116257 | Msa0346560:intron | 30.0% | |
| ! | TTGCACTAGTTTGTAGAAAA+TGG | - | chr3_1:7116294-7116313 | Msa0346560:intron | 30.0% |
| TACAACTAAAGACTTGCATA+TGG | - | chr3_1:7116334-7116353 | Msa0346560:intron | 30.0% | |
| ACAACTAAAGACTTGCATAT+GGG | - | chr3_1:7116335-7116354 | Msa0346560:intron | 30.0% | |
| TAAACCTATATATCCCCTAA+AGG | - | chr3_1:7116443-7116462 | Msa0346560:intron | 30.0% | |
| AGATTGAGAAAATAGCTCAA+GGG | + | chr3_1:7116556-7116575 | None:intergenic | 30.0% | |
| AACATGAGAAATTTGTGGTA+GGG | + | chr3_1:7116755-7116774 | None:intergenic | 30.0% | |
| GTGATTACGAAGAAAAATTG+TGG | + | chr3_1:7116788-7116807 | None:intergenic | 30.0% | |
| TAAAAAACAATAAAGGGTGG+TGG | + | chr3_1:7116881-7116900 | None:intergenic | 30.0% | |
| TGGAGAATATACAATGTATG+TGG | - | chr3_1:7116953-7116972 | Msa0346560:intron | 30.0% | |
| ATATACAATGTATGTGGATC+AGG | - | chr3_1:7116959-7116978 | Msa0346560:intron | 30.0% | |
| GATACTTTATACGGGATACA+CGG | + | chr3_1:7115033-7115052 | None:intergenic | 35.0% | |
| ! | CAGGGTTTTCCTATTTTCTT+TGG | - | chr3_1:7115063-7115082 | Msa0346560:CDS | 35.0% |
| !! | AAGAGTTGGTAGTGATGTTA+GGG | + | chr3_1:7115236-7115255 | None:intergenic | 35.0% |
| TTTGTTCCCTTGACAATAGA+GGG | + | chr3_1:7115390-7115409 | None:intergenic | 35.0% | |
| ! | TTTTGTTCCCTTGACAATAG+AGG | + | chr3_1:7115391-7115410 | None:intergenic | 35.0% |
| CATGCTTCAGTGAAGTATAA+GGG | + | chr3_1:7115422-7115441 | None:intergenic | 35.0% | |
| AAATATATCTGCTCTTCCGA+TGG | + | chr3_1:7115809-7115828 | None:intergenic | 35.0% | |
| GAGCAGATATATTTAACCCT+TGG | - | chr3_1:7115815-7115834 | Msa0346560:intron | 35.0% | |
| TTTAACCCTTGGGAAAATCT+AGG | - | chr3_1:7115826-7115845 | Msa0346560:intron | 35.0% | |
| ! | CTTTTTCCTAGATTTTCCCA+AGG | + | chr3_1:7115835-7115854 | None:intergenic | 35.0% |
| ! | TAGAGTACTATTTGACCCTT+TGG | - | chr3_1:7115993-7116012 | Msa0346560:intron | 35.0% |
| ! | AGAGTACTATTTGACCCTTT+GGG | - | chr3_1:7115994-7116013 | Msa0346560:intron | 35.0% |
| ! | TTTTTCCTGGATTTCCCAAA+GGG | + | chr3_1:7116011-7116030 | None:intergenic | 35.0% |
| !!! | TTTTTTCCTGGATTTCCCAA+AGG | + | chr3_1:7116012-7116031 | None:intergenic | 35.0% |
| AAAACTTAGTGTCCATACGT+AGG | - | chr3_1:7116116-7116135 | Msa0346560:intron | 35.0% | |
| AAACTTAGTGTCCATACGTA+GGG | - | chr3_1:7116117-7116136 | Msa0346560:intron | 35.0% | |
| CATTGTTAATTAAAGGCTGG+TGG | - | chr3_1:7116241-7116260 | Msa0346560:intron | 35.0% | |
| !! | GGAGTTTTTGCTATAGGAAT+AGG | - | chr3_1:7116363-7116382 | Msa0346560:intron | 35.0% |
| TGAAGTCGTTCAAATGTGAA+TGG | + | chr3_1:7116405-7116424 | None:intergenic | 35.0% | |
| TTTGAATGCAGCATCCTTTA+GGG | + | chr3_1:7116460-7116479 | None:intergenic | 35.0% | |
| ! | TTTTGAATGCAGCATCCTTT+AGG | + | chr3_1:7116461-7116480 | None:intergenic | 35.0% |
| TTGACACCTATGACTTCTTT+AGG | + | chr3_1:7116508-7116527 | None:intergenic | 35.0% | |
| AGAAGTCATAGGTGTCAATT+TGG | - | chr3_1:7116510-7116529 | Msa0346560:intron | 35.0% | |
| ! | TCAATTTGGTGAACTAGCTA+GGG | - | chr3_1:7116524-7116543 | Msa0346560:intron | 35.0% |
| CAGATTGAGAAAATAGCTCA+AGG | + | chr3_1:7116557-7116576 | None:intergenic | 35.0% | |
| AAAATACCCATGCCACATAA+GGG | + | chr3_1:7116648-7116667 | None:intergenic | 35.0% | |
| AAAAATACCCATGCCACATA+AGG | + | chr3_1:7116649-7116668 | None:intergenic | 35.0% | |
| GAACATGAGAAATTTGTGGT+AGG | + | chr3_1:7116756-7116775 | None:intergenic | 35.0% | |
| GAAGGAACATGAGAAATTTG+TGG | + | chr3_1:7116760-7116779 | None:intergenic | 35.0% | |
| AGAAAAATTGTGGGTTTGGA+AGG | + | chr3_1:7116778-7116797 | None:intergenic | 35.0% | |
| ACGAAGAAAAATTGTGGGTT+TGG | + | chr3_1:7116782-7116801 | None:intergenic | 35.0% | |
| AAGTAGCTTGAAGTTGAAGA+GGG | + | chr3_1:7116825-7116844 | None:intergenic | 35.0% | |
| CTTCTTCTTCCTTTCAATTC+AGG | - | chr3_1:7116851-7116870 | Msa0346560:intron | 35.0% | |
| GATACTTTATACGGGATACA+CGG | + | chr3_1:7115033-7115052 | None:intergenic | 35.0% | |
| ! | CAGGGTTTTCCTATTTTCTT+TGG | - | chr3_1:7115063-7115082 | Msa0346560:CDS | 35.0% |
| !! | AAGAGTTGGTAGTGATGTTA+GGG | + | chr3_1:7115236-7115255 | None:intergenic | 35.0% |
| TTTGTTCCCTTGACAATAGA+GGG | + | chr3_1:7115390-7115409 | None:intergenic | 35.0% | |
| ! | TTTTGTTCCCTTGACAATAG+AGG | + | chr3_1:7115391-7115410 | None:intergenic | 35.0% |
| CATGCTTCAGTGAAGTATAA+GGG | + | chr3_1:7115422-7115441 | None:intergenic | 35.0% | |
| AAATATATCTGCTCTTCCGA+TGG | + | chr3_1:7115809-7115828 | None:intergenic | 35.0% | |
| GAGCAGATATATTTAACCCT+TGG | - | chr3_1:7115815-7115834 | Msa0346560:intron | 35.0% | |
| TTTAACCCTTGGGAAAATCT+AGG | - | chr3_1:7115826-7115845 | Msa0346560:intron | 35.0% | |
| ! | CTTTTTCCTAGATTTTCCCA+AGG | + | chr3_1:7115835-7115854 | None:intergenic | 35.0% |
| ! | TAGAGTACTATTTGACCCTT+TGG | - | chr3_1:7115993-7116012 | Msa0346560:intron | 35.0% |
| ! | AGAGTACTATTTGACCCTTT+GGG | - | chr3_1:7115994-7116013 | Msa0346560:intron | 35.0% |
| ! | TTTTTCCTGGATTTCCCAAA+GGG | + | chr3_1:7116011-7116030 | None:intergenic | 35.0% |
| !!! | TTTTTTCCTGGATTTCCCAA+AGG | + | chr3_1:7116012-7116031 | None:intergenic | 35.0% |
| AAAACTTAGTGTCCATACGT+AGG | - | chr3_1:7116116-7116135 | Msa0346560:intron | 35.0% | |
| AAACTTAGTGTCCATACGTA+GGG | - | chr3_1:7116117-7116136 | Msa0346560:intron | 35.0% | |
| CATTGTTAATTAAAGGCTGG+TGG | - | chr3_1:7116241-7116260 | Msa0346560:intron | 35.0% | |
| !! | GGAGTTTTTGCTATAGGAAT+AGG | - | chr3_1:7116363-7116382 | Msa0346560:intron | 35.0% |
| TGAAGTCGTTCAAATGTGAA+TGG | + | chr3_1:7116405-7116424 | None:intergenic | 35.0% | |
| TTTGAATGCAGCATCCTTTA+GGG | + | chr3_1:7116460-7116479 | None:intergenic | 35.0% | |
| ! | TTTTGAATGCAGCATCCTTT+AGG | + | chr3_1:7116461-7116480 | None:intergenic | 35.0% |
| TTGACACCTATGACTTCTTT+AGG | + | chr3_1:7116508-7116527 | None:intergenic | 35.0% | |
| AGAAGTCATAGGTGTCAATT+TGG | - | chr3_1:7116510-7116529 | Msa0346560:intron | 35.0% | |
| ! | TCAATTTGGTGAACTAGCTA+GGG | - | chr3_1:7116524-7116543 | Msa0346560:intron | 35.0% |
| CAGATTGAGAAAATAGCTCA+AGG | + | chr3_1:7116557-7116576 | None:intergenic | 35.0% | |
| AAAATACCCATGCCACATAA+GGG | + | chr3_1:7116648-7116667 | None:intergenic | 35.0% | |
| AAAAATACCCATGCCACATA+AGG | + | chr3_1:7116649-7116668 | None:intergenic | 35.0% | |
| GAACATGAGAAATTTGTGGT+AGG | + | chr3_1:7116756-7116775 | None:intergenic | 35.0% | |
| GAAGGAACATGAGAAATTTG+TGG | + | chr3_1:7116760-7116779 | None:intergenic | 35.0% | |
| AGAAAAATTGTGGGTTTGGA+AGG | + | chr3_1:7116778-7116797 | None:intergenic | 35.0% | |
| ACGAAGAAAAATTGTGGGTT+TGG | + | chr3_1:7116782-7116801 | None:intergenic | 35.0% | |
| AAGTAGCTTGAAGTTGAAGA+GGG | + | chr3_1:7116825-7116844 | None:intergenic | 35.0% | |
| CTTCTTCTTCCTTTCAATTC+AGG | - | chr3_1:7116851-7116870 | Msa0346560:intron | 35.0% | |
| TGTCGATGAAACAGCAACAT+CGG | + | chr3_1:7115188-7115207 | None:intergenic | 40.0% | |
| !! | TGTTGCTGTTTCATCGACAA+AGG | - | chr3_1:7115189-7115208 | Msa0346560:intron | 40.0% |
| !! | TGATGTTAGGGTTTTGGTAG+TGG | + | chr3_1:7115224-7115243 | None:intergenic | 40.0% |
| !! | TGGTAGTGATGTTAGGGTTT+TGG | + | chr3_1:7115230-7115249 | None:intergenic | 40.0% |
| !! | GAAGAGTTGGTAGTGATGTT+AGG | + | chr3_1:7115237-7115256 | None:intergenic | 40.0% |
| ACAAGTTTCAACGGAAGAGT+TGG | + | chr3_1:7115250-7115269 | None:intergenic | 40.0% | |
| AACTCTTCCGTTGAAACTTG+TGG | - | chr3_1:7115249-7115268 | Msa0346560:intron | 40.0% | |
| ! | AAGTTGAAGGAGTTGGTTCA+CGG | + | chr3_1:7115296-7115315 | None:intergenic | 40.0% |
| CAACTCCTTCAACTTAAACG+CGG | - | chr3_1:7115301-7115320 | Msa0346560:intron | 40.0% | |
| TTGTCAAGGGAACAAAACTC+AGG | - | chr3_1:7115394-7115413 | Msa0346560:intron | 40.0% | |
| CCATGCTTCAGTGAAGTATA+AGG | + | chr3_1:7115423-7115442 | None:intergenic | 40.0% | |
| CCTTATACTTCACTGAAGCA+TGG | - | chr3_1:7115420-7115439 | Msa0346560:intron | 40.0% | |
| ! | CGCTATGTTAGTGAAGTGTT+CGG | - | chr3_1:7115446-7115465 | Msa0346560:intron | 40.0% |
| ! | TTGATAAACGGTTTGCTCTG+TGG | - | chr3_1:7115773-7115792 | Msa0346560:intron | 40.0% |
| ! | AGGGTACTTGTTCTTAGAAG+AGG | - | chr3_1:7115969-7115988 | Msa0346560:intron | 40.0% |
| GGGTACTTGTTCTTAGAAGA+GGG | - | chr3_1:7115970-7115989 | Msa0346560:intron | 40.0% | |
| AACTTAGTGTCCATACGTAG+GGG | - | chr3_1:7116118-7116137 | Msa0346560:intron | 40.0% | |
| ! | GCATCCTTTAGGGGATATAT+AGG | + | chr3_1:7116450-7116469 | None:intergenic | 40.0% |
| TTGAATGCAGCATCCTTTAG+GGG | + | chr3_1:7116459-7116478 | None:intergenic | 40.0% | |
| CTATGACTTCTTTAGGTGGA+GGG | + | chr3_1:7116501-7116520 | None:intergenic | 40.0% | |
| ACACCTATGACTTCTTTAGG+TGG | + | chr3_1:7116505-7116524 | None:intergenic | 40.0% | |
| ! | GTCAATTTGGTGAACTAGCT+AGG | - | chr3_1:7116523-7116542 | Msa0346560:intron | 40.0% |
| AAATACCCATGCCACATAAG+GGG | + | chr3_1:7116647-7116666 | None:intergenic | 40.0% | |
| GAGATCTAAGAGAGAGAAGA+GGG | + | chr3_1:7116700-7116719 | None:intergenic | 40.0% | |
| AGAGTGAGAGGAAGAAGAAA+GGG | + | chr3_1:7116722-7116741 | None:intergenic | 40.0% | |
| GAAGTAGCTTGAAGTTGAAG+AGG | + | chr3_1:7116826-7116845 | None:intergenic | 40.0% | |
| !! | TGATTTCTAGCTGATGCAAC+TGG | - | chr3_1:7116933-7116952 | Msa0346560:intron | 40.0% |
| GTTATTCTCACCCGTTACAA+CGG | - | chr3_1:7117071-7117090 | Msa0346560:intron | 40.0% | |
| TGCCAATGCTATGTTGTACA+TGG | - | chr3_1:7117115-7117134 | Msa0346560:intron | 40.0% | |
| TGCCATGTACAACATAGCAT+TGG | + | chr3_1:7117120-7117139 | None:intergenic | 40.0% | |
| TGTCGATGAAACAGCAACAT+CGG | + | chr3_1:7115188-7115207 | None:intergenic | 40.0% | |
| !! | TGTTGCTGTTTCATCGACAA+AGG | - | chr3_1:7115189-7115208 | Msa0346560:intron | 40.0% |
| !! | TGATGTTAGGGTTTTGGTAG+TGG | + | chr3_1:7115224-7115243 | None:intergenic | 40.0% |
| !! | TGGTAGTGATGTTAGGGTTT+TGG | + | chr3_1:7115230-7115249 | None:intergenic | 40.0% |
| !! | GAAGAGTTGGTAGTGATGTT+AGG | + | chr3_1:7115237-7115256 | None:intergenic | 40.0% |
| ACAAGTTTCAACGGAAGAGT+TGG | + | chr3_1:7115250-7115269 | None:intergenic | 40.0% | |
| AACTCTTCCGTTGAAACTTG+TGG | - | chr3_1:7115249-7115268 | Msa0346560:intron | 40.0% | |
| ! | AAGTTGAAGGAGTTGGTTCA+CGG | + | chr3_1:7115296-7115315 | None:intergenic | 40.0% |
| CAACTCCTTCAACTTAAACG+CGG | - | chr3_1:7115301-7115320 | Msa0346560:intron | 40.0% | |
| TTGTCAAGGGAACAAAACTC+AGG | - | chr3_1:7115394-7115413 | Msa0346560:intron | 40.0% | |
| CCATGCTTCAGTGAAGTATA+AGG | + | chr3_1:7115423-7115442 | None:intergenic | 40.0% | |
| CCTTATACTTCACTGAAGCA+TGG | - | chr3_1:7115420-7115439 | Msa0346560:intron | 40.0% | |
| ! | CGCTATGTTAGTGAAGTGTT+CGG | - | chr3_1:7115446-7115465 | Msa0346560:intron | 40.0% |
| ! | TTGATAAACGGTTTGCTCTG+TGG | - | chr3_1:7115773-7115792 | Msa0346560:intron | 40.0% |
| ! | AGGGTACTTGTTCTTAGAAG+AGG | - | chr3_1:7115969-7115988 | Msa0346560:intron | 40.0% |
| GGGTACTTGTTCTTAGAAGA+GGG | - | chr3_1:7115970-7115989 | Msa0346560:intron | 40.0% | |
| AACTTAGTGTCCATACGTAG+GGG | - | chr3_1:7116118-7116137 | Msa0346560:intron | 40.0% | |
| ! | GCATCCTTTAGGGGATATAT+AGG | + | chr3_1:7116450-7116469 | None:intergenic | 40.0% |
| TTGAATGCAGCATCCTTTAG+GGG | + | chr3_1:7116459-7116478 | None:intergenic | 40.0% | |
| CTATGACTTCTTTAGGTGGA+GGG | + | chr3_1:7116501-7116520 | None:intergenic | 40.0% | |
| ACACCTATGACTTCTTTAGG+TGG | + | chr3_1:7116505-7116524 | None:intergenic | 40.0% | |
| ! | GTCAATTTGGTGAACTAGCT+AGG | - | chr3_1:7116523-7116542 | Msa0346560:intron | 40.0% |
| AAATACCCATGCCACATAAG+GGG | + | chr3_1:7116647-7116666 | None:intergenic | 40.0% | |
| GAGATCTAAGAGAGAGAAGA+GGG | + | chr3_1:7116700-7116719 | None:intergenic | 40.0% | |
| AGAGTGAGAGGAAGAAGAAA+GGG | + | chr3_1:7116722-7116741 | None:intergenic | 40.0% | |
| GAAGTAGCTTGAAGTTGAAG+AGG | + | chr3_1:7116826-7116845 | None:intergenic | 40.0% | |
| !! | TGATTTCTAGCTGATGCAAC+TGG | - | chr3_1:7116933-7116952 | Msa0346560:intron | 40.0% |
| GTTATTCTCACCCGTTACAA+CGG | - | chr3_1:7117071-7117090 | Msa0346560:intron | 40.0% | |
| TGCCAATGCTATGTTGTACA+TGG | - | chr3_1:7117115-7117134 | Msa0346560:intron | 40.0% | |
| TGCCATGTACAACATAGCAT+TGG | + | chr3_1:7117120-7117139 | None:intergenic | 40.0% | |
| ACGGGATACACGGTTAACTT+GGG | + | chr3_1:7115023-7115042 | None:intergenic | 45.0% | |
| TACGGGATACACGGTTAACT+TGG | + | chr3_1:7115024-7115043 | None:intergenic | 45.0% | |
| ! | CGCTCTAAACATTCAGAACG+AGG | - | chr3_1:7115142-7115161 | Msa0346560:CDS | 45.0% |
| ACATTCAGAACGAGGTAGCA+TGG | - | chr3_1:7115150-7115169 | Msa0346560:CDS | 45.0% | |
| CATTCAGAACGAGGTAGCAT+GGG | - | chr3_1:7115151-7115170 | Msa0346560:CDS | 45.0% | |
| !! | TGCTGTTTCATCGACAAAGG+AGG | - | chr3_1:7115192-7115211 | Msa0346560:intron | 45.0% |
| !!! | TGTTAGGGTTTTGGTAGTGG+TGG | + | chr3_1:7115221-7115240 | None:intergenic | 45.0% |
| ! | AGTTGAAGGAGTTGGTTCAC+GGG | + | chr3_1:7115295-7115314 | None:intergenic | 45.0% |
| !! | CGCGTTTAAGTTGAAGGAGT+TGG | + | chr3_1:7115303-7115322 | None:intergenic | 45.0% |
| !! | TGCATCCGCGTTTAAGTTGA+AGG | + | chr3_1:7115309-7115328 | None:intergenic | 45.0% |
| TTAAACGCGGATGCAAGTCA+TGG | - | chr3_1:7115314-7115333 | Msa0346560:intron | 45.0% | |
| GCAGTTGAGAATGTGCTTCT+TGG | + | chr3_1:7115368-7115387 | None:intergenic | 45.0% | |
| TCAACTGCCCTCTATTGTCA+AGG | - | chr3_1:7115380-7115399 | Msa0346560:intron | 45.0% | |
| CAACTGCCCTCTATTGTCAA+GGG | - | chr3_1:7115381-7115400 | Msa0346560:intron | 45.0% | |
| ! | ATAAACGGTTTGCTCTGTGG+TGG | - | chr3_1:7115776-7115795 | Msa0346560:intron | 45.0% |
| TATCTGCTCTTCCGATGGAA+GGG | + | chr3_1:7115804-7115823 | None:intergenic | 45.0% | |
| ATATCTGCTCTTCCGATGGA+AGG | + | chr3_1:7115805-7115824 | None:intergenic | 45.0% | |
| ! | TTTGACCCTTTGGGAAATCC+AGG | - | chr3_1:7116003-7116022 | Msa0346560:intron | 45.0% |
| AAAGACTTGCATATGGGAGC+AGG | - | chr3_1:7116341-7116360 | Msa0346560:intron | 45.0% | |
| AAGACTTGCATATGGGAGCA+GGG | - | chr3_1:7116342-7116361 | Msa0346560:intron | 45.0% | |
| !! | GAGCAGGGAGTTTTTGCTAT+AGG | - | chr3_1:7116357-7116376 | Msa0346560:intron | 45.0% |
| CCTATGACTTCTTTAGGTGG+AGG | + | chr3_1:7116502-7116521 | None:intergenic | 45.0% | |
| CCTCCACCTAAAGAAGTCAT+AGG | - | chr3_1:7116499-7116518 | Msa0346560:intron | 45.0% | |
| TGGAAGAGTGGTATGGAGAA+GGG | + | chr3_1:7116620-7116639 | None:intergenic | 45.0% | |
| ATGGAAGAGTGGTATGGAGA+AGG | + | chr3_1:7116621-7116640 | None:intergenic | 45.0% | |
| ! | ATAAGGGGTGTATGGAAGAG+TGG | + | chr3_1:7116632-7116651 | None:intergenic | 45.0% |
| TCTTCCATACACCCCTTATG+TGG | - | chr3_1:7116633-7116652 | Msa0346560:intron | 45.0% | |
| ATACACCCCTTATGTGGCAT+GGG | - | chr3_1:7116639-7116658 | Msa0346560:intron | 45.0% | |
| GGAGATCTAAGAGAGAGAAG+AGG | + | chr3_1:7116701-7116720 | None:intergenic | 45.0% | |
| CAGAGTGAGAGGAAGAAGAA+AGG | + | chr3_1:7116723-7116742 | None:intergenic | 45.0% | |
| AATTTGTGGTAGGGAGTGAG+AGG | + | chr3_1:7116746-7116765 | None:intergenic | 45.0% | |
| GGTGGTGTACCTGAATTGAA+AGG | + | chr3_1:7116863-7116882 | None:intergenic | 45.0% | |
| ATTGGCAAACCTGTCATTGG+AGG | + | chr3_1:7117102-7117121 | None:intergenic | 45.0% | |
| !! | AGCATTGGCAAACCTGTCAT+TGG | + | chr3_1:7117105-7117124 | None:intergenic | 45.0% |
| TGCTATGTTGTACATGGCAG+AGG | - | chr3_1:7117121-7117140 | Msa0346560:intron | 45.0% | |
| TATGTTGTACATGGCAGAGG+AGG | - | chr3_1:7117124-7117143 | Msa0346560:intron | 45.0% | |
| CCAATTCCTGCATTTGCTTG+AGG | + | chr3_1:7117172-7117191 | None:intergenic | 45.0% | |
| CCTCAAGCAAATGCAGGAAT+TGG | - | chr3_1:7117169-7117188 | Msa0346560:intron | 45.0% | |
| ACGGGATACACGGTTAACTT+GGG | + | chr3_1:7115023-7115042 | None:intergenic | 45.0% | |
| TACGGGATACACGGTTAACT+TGG | + | chr3_1:7115024-7115043 | None:intergenic | 45.0% | |
| ! | CGCTCTAAACATTCAGAACG+AGG | - | chr3_1:7115142-7115161 | Msa0346560:CDS | 45.0% |
| ACATTCAGAACGAGGTAGCA+TGG | - | chr3_1:7115150-7115169 | Msa0346560:CDS | 45.0% | |
| CATTCAGAACGAGGTAGCAT+GGG | - | chr3_1:7115151-7115170 | Msa0346560:CDS | 45.0% | |
| !! | TGCTGTTTCATCGACAAAGG+AGG | - | chr3_1:7115192-7115211 | Msa0346560:intron | 45.0% |
| !!! | TGTTAGGGTTTTGGTAGTGG+TGG | + | chr3_1:7115221-7115240 | None:intergenic | 45.0% |
| ! | AGTTGAAGGAGTTGGTTCAC+GGG | + | chr3_1:7115295-7115314 | None:intergenic | 45.0% |
| !! | CGCGTTTAAGTTGAAGGAGT+TGG | + | chr3_1:7115303-7115322 | None:intergenic | 45.0% |
| !! | TGCATCCGCGTTTAAGTTGA+AGG | + | chr3_1:7115309-7115328 | None:intergenic | 45.0% |
| TTAAACGCGGATGCAAGTCA+TGG | - | chr3_1:7115314-7115333 | Msa0346560:intron | 45.0% | |
| GCAGTTGAGAATGTGCTTCT+TGG | + | chr3_1:7115368-7115387 | None:intergenic | 45.0% | |
| TCAACTGCCCTCTATTGTCA+AGG | - | chr3_1:7115380-7115399 | Msa0346560:intron | 45.0% | |
| CAACTGCCCTCTATTGTCAA+GGG | - | chr3_1:7115381-7115400 | Msa0346560:intron | 45.0% | |
| ! | ATAAACGGTTTGCTCTGTGG+TGG | - | chr3_1:7115776-7115795 | Msa0346560:intron | 45.0% |
| TATCTGCTCTTCCGATGGAA+GGG | + | chr3_1:7115804-7115823 | None:intergenic | 45.0% | |
| ATATCTGCTCTTCCGATGGA+AGG | + | chr3_1:7115805-7115824 | None:intergenic | 45.0% | |
| ! | TTTGACCCTTTGGGAAATCC+AGG | - | chr3_1:7116003-7116022 | Msa0346560:intron | 45.0% |
| AAAGACTTGCATATGGGAGC+AGG | - | chr3_1:7116341-7116360 | Msa0346560:intron | 45.0% | |
| AAGACTTGCATATGGGAGCA+GGG | - | chr3_1:7116342-7116361 | Msa0346560:intron | 45.0% | |
| !! | GAGCAGGGAGTTTTTGCTAT+AGG | - | chr3_1:7116357-7116376 | Msa0346560:intron | 45.0% |
| CCTATGACTTCTTTAGGTGG+AGG | + | chr3_1:7116502-7116521 | None:intergenic | 45.0% | |
| CCTCCACCTAAAGAAGTCAT+AGG | - | chr3_1:7116499-7116518 | Msa0346560:intron | 45.0% | |
| TGGAAGAGTGGTATGGAGAA+GGG | + | chr3_1:7116620-7116639 | None:intergenic | 45.0% | |
| ATGGAAGAGTGGTATGGAGA+AGG | + | chr3_1:7116621-7116640 | None:intergenic | 45.0% | |
| ! | ATAAGGGGTGTATGGAAGAG+TGG | + | chr3_1:7116632-7116651 | None:intergenic | 45.0% |
| TCTTCCATACACCCCTTATG+TGG | - | chr3_1:7116633-7116652 | Msa0346560:intron | 45.0% | |
| ATACACCCCTTATGTGGCAT+GGG | - | chr3_1:7116639-7116658 | Msa0346560:intron | 45.0% | |
| GGAGATCTAAGAGAGAGAAG+AGG | + | chr3_1:7116701-7116720 | None:intergenic | 45.0% | |
| CAGAGTGAGAGGAAGAAGAA+AGG | + | chr3_1:7116723-7116742 | None:intergenic | 45.0% | |
| AATTTGTGGTAGGGAGTGAG+AGG | + | chr3_1:7116746-7116765 | None:intergenic | 45.0% | |
| GGTGGTGTACCTGAATTGAA+AGG | + | chr3_1:7116863-7116882 | None:intergenic | 45.0% | |
| ATTGGCAAACCTGTCATTGG+AGG | + | chr3_1:7117102-7117121 | None:intergenic | 45.0% | |
| !! | AGCATTGGCAAACCTGTCAT+TGG | + | chr3_1:7117105-7117124 | None:intergenic | 45.0% |
| TGCTATGTTGTACATGGCAG+AGG | - | chr3_1:7117121-7117140 | Msa0346560:intron | 45.0% | |
| TATGTTGTACATGGCAGAGG+AGG | - | chr3_1:7117124-7117143 | Msa0346560:intron | 45.0% | |
| CCAATTCCTGCATTTGCTTG+AGG | + | chr3_1:7117172-7117191 | None:intergenic | 45.0% | |
| CCTCAAGCAAATGCAGGAAT+TGG | - | chr3_1:7117169-7117188 | Msa0346560:intron | 45.0% | |
| ! | CGGGATACACGGTTAACTTG+GGG | + | chr3_1:7115022-7115041 | None:intergenic | 50.0% |
| AAACAGCAACATCGGATCCC+CGG | + | chr3_1:7115180-7115199 | None:intergenic | 50.0% | |
| CATTGCATAGCCCCTACGTA+TGG | + | chr3_1:7116131-7116150 | None:intergenic | 50.0% | |
| TTAGGTGGAGGGTGAAGATG+AGG | + | chr3_1:7116490-7116509 | None:intergenic | 50.0% | |
| GGGTGTATGGAAGAGTGGTA+TGG | + | chr3_1:7116627-7116646 | None:intergenic | 50.0% | |
| ! | CATGCCACATAAGGGGTGTA+TGG | + | chr3_1:7116640-7116659 | None:intergenic | 50.0% |
| CATACACCCCTTATGTGGCA+TGG | - | chr3_1:7116638-7116657 | Msa0346560:intron | 50.0% | |
| GAAGAGGGCGAAGAAAGTTG+TGG | + | chr3_1:7116810-7116829 | None:intergenic | 50.0% | |
| CTTTCGCTACAACTACGCTC+AGG | + | chr3_1:7117026-7117045 | None:intergenic | 50.0% | |
| !! | AGTTGTAGCGAAAGAGCACC+TGG | - | chr3_1:7117032-7117051 | Msa0346560:intron | 50.0% |
| !! | GTTGTAGCGAAAGAGCACCT+GGG | - | chr3_1:7117033-7117052 | Msa0346560:intron | 50.0% |
| TGGAGGCAATGCCGTTGTAA+CGG | + | chr3_1:7117085-7117104 | None:intergenic | 50.0% | |
| TGAGGTCCTCAAGCAAATGC+AGG | - | chr3_1:7117163-7117182 | Msa0346560:intron | 50.0% | |
| ! | CGGGATACACGGTTAACTTG+GGG | + | chr3_1:7115022-7115041 | None:intergenic | 50.0% |
| AAACAGCAACATCGGATCCC+CGG | + | chr3_1:7115180-7115199 | None:intergenic | 50.0% | |
| CATTGCATAGCCCCTACGTA+TGG | + | chr3_1:7116131-7116150 | None:intergenic | 50.0% | |
| TTAGGTGGAGGGTGAAGATG+AGG | + | chr3_1:7116490-7116509 | None:intergenic | 50.0% | |
| GGGTGTATGGAAGAGTGGTA+TGG | + | chr3_1:7116627-7116646 | None:intergenic | 50.0% | |
| ! | CATGCCACATAAGGGGTGTA+TGG | + | chr3_1:7116640-7116659 | None:intergenic | 50.0% |
| CATACACCCCTTATGTGGCA+TGG | - | chr3_1:7116638-7116657 | Msa0346560:intron | 50.0% | |
| GAAGAGGGCGAAGAAAGTTG+TGG | + | chr3_1:7116810-7116829 | None:intergenic | 50.0% | |
| CTTTCGCTACAACTACGCTC+AGG | + | chr3_1:7117026-7117045 | None:intergenic | 50.0% | |
| !! | AGTTGTAGCGAAAGAGCACC+TGG | - | chr3_1:7117032-7117051 | Msa0346560:intron | 50.0% |
| !! | GTTGTAGCGAAAGAGCACCT+GGG | - | chr3_1:7117033-7117052 | Msa0346560:intron | 50.0% |
| TGGAGGCAATGCCGTTGTAA+CGG | + | chr3_1:7117085-7117104 | None:intergenic | 50.0% | |
| TGAGGTCCTCAAGCAAATGC+AGG | - | chr3_1:7117163-7117182 | Msa0346560:intron | 50.0% | |
| AACGAGGTAGCATGGGCAAC+CGG | - | chr3_1:7115158-7115177 | Msa0346560:CDS | 55.0% | |
| GGTTCACGGGTAGTCTAAGC+AGG | + | chr3_1:7115282-7115301 | None:intergenic | 55.0% | |
| ! | CTGTGGTGGAACCCTTCCAT+CGG | - | chr3_1:7115790-7115809 | Msa0346560:intron | 55.0% |
| GGGTGAGAATAACGCGTGCT+TGG | + | chr3_1:7117064-7117083 | None:intergenic | 55.0% | |
| GGAGGCAATGCCGTTGTAAC+GGG | + | chr3_1:7117084-7117103 | None:intergenic | 55.0% | |
| ACGGCATTGCCTCCAATGAC+AGG | - | chr3_1:7117090-7117109 | Msa0346560:intron | 55.0% | |
| ! | GGTTGCTTCTAGCTGTGCTG+AGG | - | chr3_1:7117145-7117164 | Msa0346560:intron | 55.0% |
| AACGAGGTAGCATGGGCAAC+CGG | - | chr3_1:7115158-7115177 | Msa0346560:CDS | 55.0% | |
| GGTTCACGGGTAGTCTAAGC+AGG | + | chr3_1:7115282-7115301 | None:intergenic | 55.0% | |
| ! | CTGTGGTGGAACCCTTCCAT+CGG | - | chr3_1:7115790-7115809 | Msa0346560:intron | 55.0% |
| GGGTGAGAATAACGCGTGCT+TGG | + | chr3_1:7117064-7117083 | None:intergenic | 55.0% | |
| GGAGGCAATGCCGTTGTAAC+GGG | + | chr3_1:7117084-7117103 | None:intergenic | 55.0% | |
| ACGGCATTGCCTCCAATGAC+AGG | - | chr3_1:7117090-7117109 | Msa0346560:intron | 55.0% | |
| ! | GGTTGCTTCTAGCTGTGCTG+AGG | - | chr3_1:7117145-7117164 | Msa0346560:intron | 55.0% |
| ACGAGGTAGCATGGGCAACC+GGG | - | chr3_1:7115159-7115178 | Msa0346560:CDS | 60.0% | |
| GGAGTGAGAGGCAGAGTGAG+AGG | + | chr3_1:7116734-7116753 | None:intergenic | 60.0% | |
| ACGAGGTAGCATGGGCAACC+GGG | - | chr3_1:7115159-7115178 | Msa0346560:CDS | 60.0% | |
| GGAGTGAGAGGCAGAGTGAG+AGG | + | chr3_1:7116734-7116753 | None:intergenic | 60.0% | |
| CGAGGTAGCATGGGCAACCG+GGG | - | chr3_1:7115160-7115179 | Msa0346560:CDS | 65.0% | |
| CGAGGTAGCATGGGCAACCG+GGG | - | chr3_1:7115160-7115179 | Msa0346560:CDS | 65.0% | |
| ACGCGTGCTTGGTCACGCCC+AGG | + | chr3_1:7117053-7117072 | None:intergenic | 70.0% | |
| ACGCGTGCTTGGTCACGCCC+AGG | + | chr3_1:7117053-7117072 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 7114936 | 7117205 | 7114936 | ID=Msa0346560;Name=Msa0346560 |
| chr3_1 | mRNA | 7114936 | 7117205 | 7114936 | ID=Msa0346560-mRNA-1;Parent=Msa0346560;Name=Msa0346560-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0|0|0|0.5|1|1|2|0|88 |
| chr3_1 | exon | 7117202 | 7117205 | 7117202 | ID=Msa0346560-mRNA-1:exon:2002;Parent=Msa0346560-mRNA-1 |
| chr3_1 | exon | 7114936 | 7115198 | 7114936 | ID=Msa0346560-mRNA-1:exon:2001;Parent=Msa0346560-mRNA-1 |
| chr3_1 | CDS | 7117202 | 7117205 | 7117202 | ID=Msa0346560-mRNA-1:cds;Parent=Msa0346560-mRNA-1 |
| chr3_1 | CDS | 7114936 | 7115198 | 7114936 | ID=Msa0346560-mRNA-1:cds;Parent=Msa0346560-mRNA-1 |
| Gene Sequence |
| Protein sequence |
