Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0391840 | XP_013460852.1 | 90.698 | 86 | 8 | 0 | 3 | 88 | 77 | 162 | 2.21e-50 | 166 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0391840 | sp|Q9LX15|DFC_ARATH | 42.667 | 75 | 43 | 0 | 6 | 80 | 80 | 154 | 4.89e-13 | 63.5 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0391840 | B7FN25 | 90.698 | 86 | 8 | 0 | 3 | 88 | 77 | 162 | 1.06e-50 | 166 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0143560 | Msa0391840 | 0.804772 | 1.839797e-49 | -8.615850e-47 |
| Msa0212990 | Msa0391840 | 0.808586 | 2.880225e-50 | -8.615850e-47 |
| Msa0391720 | Msa0391840 | 0.953218 | 4.444217e-111 | -8.615850e-47 |
| Msa0391780 | Msa0391840 | 0.941090 | 7.609374e-101 | -8.615850e-47 |
| Msa0391840 | Msa0391880 | 0.941331 | 5.012274e-101 | -8.615850e-47 |
| Msa0391840 | Msa0422280 | 0.805093 | 1.576307e-49 | -8.615850e-47 |
| Msa0391840 | Msa0452710 | 0.804550 | 2.046940e-49 | -8.615850e-47 |
| Msa0391840 | Msa0484780 | 0.806441 | 8.215541e-50 | -8.615850e-47 |
| Msa0391840 | Msa0520700 | 0.808892 | 2.476887e-50 | -8.615850e-47 |
| Msa0391840 | Msa0622650 | 0.803321 | 3.685588e-49 | -8.615850e-47 |
| Msa0391840 | Msa0711830 | 0.817596 | 3.037744e-52 | -8.615850e-47 |
| Msa0391840 | Msa0717890 | 0.805072 | 1.592892e-49 | -8.615850e-47 |
| Msa0391840 | Msa0750240 | 0.817556 | 3.101145e-52 | -8.615850e-47 |
| Msa0391840 | Msa0760130 | 0.809244 | 2.082263e-50 | -8.615850e-47 |
| Msa0391840 | Msa0830510 | 0.823257 | 1.526781e-53 | -8.615850e-47 |
| Msa0391840 | Msa0954920 | 0.816082 | 6.642062e-52 | -8.615850e-47 |
| Msa0391840 | Msa0990350 | 0.812336 | 4.462702e-51 | -8.615850e-47 |
| Msa0391840 | Msa1082500 | 0.800562 | 1.359736e-48 | -8.615850e-47 |
| Msa0391840 | Msa1121490 | 0.807934 | 3.966625e-50 | -8.615850e-47 |
| Msa0391840 | Msa1158310 | 0.818431 | 1.967342e-52 | -8.615850e-47 |
| Msa0264780 | Msa0391840 | 0.809774 | 1.602020e-50 | -8.615850e-47 |
| Msa0330340 | Msa0391840 | 0.811999 | 5.284857e-51 | -8.615850e-47 |
| Msa0345570 | Msa0391840 | 0.904934 | 7.301537e-80 | -8.615850e-47 |
| Msa0346460 | Msa0391840 | 0.930523 | 1.447000e-93 | -8.615850e-47 |
| Msa0346560 | Msa0391840 | 0.904785 | 8.532875e-80 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0391840 | MtrunA17_Chr3g0115561 | 90.698 | 86 | 8 | 0 | 3 | 88 | 77 | 162 | 2.03e-54 | 166 |
| Msa0391840 | MtrunA17_Chr3g0124301 | 35.802 | 81 | 50 | 2 | 1 | 79 | 72 | 152 | 2.13e-14 | 64.3 |
| Msa0391840 | MtrunA17_Chr2g0283801 | 37.349 | 83 | 49 | 1 | 2 | 81 | 75 | 157 | 1.27e-12 | 59.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0391840 | AT4G08685.1 | 44.048 | 84 | 47 | 0 | 3 | 86 | 76 | 159 | 1.71e-22 | 85.5 |
| Msa0391840 | AT1G78040.1 | 40.230 | 87 | 51 | 1 | 1 | 87 | 78 | 163 | 1.60e-15 | 67.8 |
| Msa0391840 | AT1G78040.3 | 40.230 | 87 | 51 | 1 | 1 | 87 | 78 | 163 | 1.60e-15 | 67.8 |
| Msa0391840 | AT1G78040.2 | 40.230 | 87 | 51 | 1 | 1 | 87 | 78 | 163 | 1.60e-15 | 67.8 |
| Msa0391840 | AT5G10130.1 | 42.667 | 75 | 43 | 0 | 6 | 80 | 80 | 154 | 4.97e-14 | 63.5 |
Find 22 sgRNAs with CRISPR-Local
Find 352 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGATTTCTAGCTGATGCAAC+TGG | 0.377402 | 3_2:+4716338 | Msa0391840:intron |
| CCTCAAGCAAATGCAGGAAT+TGG | 0.399028 | 3_2:+4716574 | Msa0391840:CDS |
| GGAGGCAATGCCGTTGTAAC+GGG | 0.439821 | 3_2:-4716486 | None:intergenic |
| AGTTGTAGCGAAAGAGCACC+TGG | 0.442879 | 3_2:+4716437 | Msa0391840:CDS |
| ATATACAATGTATGTGGATC+AGG | 0.452269 | 3_2:+4716364 | Msa0391840:CDS |
| AGCATTGGCAAACCTGTCAT+TGG | 0.466304 | 3_2:-4716507 | None:intergenic |
| CCAATTCCTGCATTTGCTTG+AGG | 0.488555 | 3_2:-4716574 | None:intergenic |
| TGGAGGCAATGCCGTTGTAA+CGG | 0.522858 | 3_2:-4716487 | None:intergenic |
| GGGTGAGAATAACGCGTGCT+TGG | 0.527810 | 3_2:-4716466 | None:intergenic |
| ACGGCATTGCCTCCAATGAC+AGG | 0.539090 | 3_2:+4716495 | Msa0391840:CDS |
| TGCTATGTTGTACATGGCAG+AGG | 0.540527 | 3_2:+4716526 | Msa0391840:CDS |
| TGCCAATGCTATGTTGTACA+TGG | 0.550672 | 3_2:+4716520 | Msa0391840:CDS |
| TGGAGAATATACAATGTATG+TGG | 0.553534 | 3_2:+4716358 | Msa0391840:CDS |
| ACGCGTGCTTGGTCACGCCC+AGG | 0.556503 | 3_2:-4716455 | None:intergenic |
| ATTGGCAAACCTGTCATTGG+AGG | 0.565263 | 3_2:-4716504 | None:intergenic |
| TGCCATGTACAACATAGCAT+TGG | 0.582518 | 3_2:-4716522 | None:intergenic |
| GTTATTCTCACCCGTTACAA+CGG | 0.584831 | 3_2:+4716476 | Msa0391840:CDS |
| TGAGGTCCTCAAGCAAATGC+AGG | 0.587649 | 3_2:+4716568 | Msa0391840:CDS |
| GGTTGCTTCTAGCTGTGCTG+AGG | 0.620393 | 3_2:+4716550 | Msa0391840:CDS |
| CTTTCGCTACAACTACGCTC+AGG | 0.623193 | 3_2:-4716428 | None:intergenic |
| TATGTTGTACATGGCAGAGG+AGG | 0.691786 | 3_2:+4716529 | Msa0391840:CDS |
| GTTGTAGCGAAAGAGCACCT+GGG | 0.714138 | 3_2:+4716438 | Msa0391840:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CTAAATTATGTAAAAATAAA+CGG | - | chr3_2:4714881-4714900 | None:intergenic | 10.0% |
| !! | TTGTTATAAAAAACAATAAA+GGG | - | chr3_2:4716292-4716311 | None:intergenic | 10.0% |
| !! | AATAAAGAATAAAAATGAAA+GGG | - | chr3_2:4716315-4716334 | None:intergenic | 10.0% |
| !! | AAATAAAGAATAAAAATGAA+AGG | - | chr3_2:4716316-4716335 | None:intergenic | 10.0% |
| !! | CTAAATTATGTAAAAATAAA+CGG | - | chr3_2:4714881-4714900 | None:intergenic | 10.0% |
| !! | TTGTTATAAAAAACAATAAA+GGG | - | chr3_2:4716292-4716311 | None:intergenic | 10.0% |
| !! | AATAAAGAATAAAAATGAAA+GGG | - | chr3_2:4716315-4716334 | None:intergenic | 10.0% |
| !! | AAATAAAGAATAAAAATGAA+AGG | - | chr3_2:4716316-4716335 | None:intergenic | 10.0% |
| !! | AACAATAATAAAACCTAATT+TGG | - | chr3_2:4714496-4714515 | None:intergenic | 15.0% |
| !!! | TTATTGTTATTATTGTATCA+AGG | + | chr3_2:4714508-4714527 | Msa0391840:intron | 15.0% |
| !! | TTAATGCAGTTATTTATTTA+TGG | + | chr3_2:4715982-4716001 | Msa0391840:intron | 15.0% |
| !! | ATTTATTTATGGAAAAAGAT+TGG | + | chr3_2:4715993-4716012 | Msa0391840:intron | 15.0% |
| !! | GTTGTTATAAAAAACAATAA+AGG | - | chr3_2:4716293-4716312 | None:intergenic | 15.0% |
| !! | AACAATAATAAAACCTAATT+TGG | - | chr3_2:4714496-4714515 | None:intergenic | 15.0% |
| !!! | TTATTGTTATTATTGTATCA+AGG | + | chr3_2:4714508-4714527 | Msa0391840:intron | 15.0% |
| !! | TTAATGCAGTTATTTATTTA+TGG | + | chr3_2:4715982-4716001 | Msa0391840:intron | 15.0% |
| !! | ATTTATTTATGGAAAAAGAT+TGG | + | chr3_2:4715993-4716012 | Msa0391840:intron | 15.0% |
| !! | GTTGTTATAAAAAACAATAA+AGG | - | chr3_2:4716293-4716312 | None:intergenic | 15.0% |
| !!! | GTTTTTTAAAAGAGGATAAA+CGG | - | chr3_2:4714372-4714391 | None:intergenic | 20.0% |
| !! | TTATATAGGGATACTTTATA+CGG | - | chr3_2:4714447-4714466 | None:intergenic | 20.0% |
| !!! | AATGTTTCAGTATTGATAAA+CGG | + | chr3_2:4715166-4715185 | Msa0391840:intron | 20.0% |
| !! | TAATGAAAAAATCATATCCT+AGG | - | chr3_2:4715288-4715307 | None:intergenic | 20.0% |
| !! | TTATAAAAAACAATAAAGGG+TGG | - | chr3_2:4716289-4716308 | None:intergenic | 20.0% |
| !!! | GTTTTTTAAAAGAGGATAAA+CGG | - | chr3_2:4714372-4714391 | None:intergenic | 20.0% |
| !! | TTATATAGGGATACTTTATA+CGG | - | chr3_2:4714447-4714466 | None:intergenic | 20.0% |
| !!! | AATGTTTCAGTATTGATAAA+CGG | + | chr3_2:4715166-4715185 | Msa0391840:intron | 20.0% |
| !! | TAATGAAAAAATCATATCCT+AGG | - | chr3_2:4715288-4715307 | None:intergenic | 20.0% |
| !! | TTATAAAAAACAATAAAGGG+TGG | - | chr3_2:4716289-4716308 | None:intergenic | 20.0% |
| ! | TATATAGGGATACTTTATAC+GGG | - | chr3_2:4714446-4714465 | None:intergenic | 25.0% |
| !! | TAAAGTATCCCTATATAATC+AGG | + | chr3_2:4714449-4714468 | Msa0391840:intron | 25.0% |
| !! | AAAGTATCCCTATATAATCA+GGG | + | chr3_2:4714450-4714469 | Msa0391840:intron | 25.0% |
| !! | AATTTGGTTCCAAAGAAAAT+AGG | - | chr3_2:4714480-4714499 | None:intergenic | 25.0% |
| !!! | ATTTTCTTTGGAACCAAATT+AGG | + | chr3_2:4714480-4714499 | Msa0391840:intron | 25.0% |
| ! | TTTAGTTGCAGTGAAATTTA+TGG | + | chr3_2:4714896-4714915 | Msa0391840:intron | 25.0% |
| ! | GTTTATCAATACTGAAACAT+TGG | - | chr3_2:4715167-4715186 | None:intergenic | 25.0% |
| ! | AGAAGTTAGTGTTCATATTT+AGG | + | chr3_2:4715354-4715373 | Msa0391840:intron | 25.0% |
| ! | GAAGTTAGTGTTCATATTTA+GGG | + | chr3_2:4715355-4715374 | Msa0391840:intron | 25.0% |
| ! | CATGGATCATTGTTAATTAA+AGG | + | chr3_2:4715639-4715658 | Msa0391840:intron | 25.0% |
| !! | TAGTTTGTAGAAAATGGAAA+AGG | + | chr3_2:4715705-4715724 | Msa0391840:intron | 25.0% |
| ! | AGTTTGTAGAAAATGGAAAA+GGG | + | chr3_2:4715706-4715725 | Msa0391840:intron | 25.0% |
| ! | TAGGAATAGGAATAACTTTA+CGG | + | chr3_2:4715781-4715800 | Msa0391840:intron | 25.0% |
| ! | TGATTACGAAGAAAAATTGT+GGG | - | chr3_2:4716192-4716211 | None:intergenic | 25.0% |
| ! | TATATAGGGATACTTTATAC+GGG | - | chr3_2:4714446-4714465 | None:intergenic | 25.0% |
| !! | TAAAGTATCCCTATATAATC+AGG | + | chr3_2:4714449-4714468 | Msa0391840:intron | 25.0% |
| !! | AAAGTATCCCTATATAATCA+GGG | + | chr3_2:4714450-4714469 | Msa0391840:intron | 25.0% |
| !! | AATTTGGTTCCAAAGAAAAT+AGG | - | chr3_2:4714480-4714499 | None:intergenic | 25.0% |
| !!! | ATTTTCTTTGGAACCAAATT+AGG | + | chr3_2:4714480-4714499 | Msa0391840:intron | 25.0% |
| ! | TTTAGTTGCAGTGAAATTTA+TGG | + | chr3_2:4714896-4714915 | Msa0391840:intron | 25.0% |
| ! | GTTTATCAATACTGAAACAT+TGG | - | chr3_2:4715167-4715186 | None:intergenic | 25.0% |
| ! | AGAAGTTAGTGTTCATATTT+AGG | + | chr3_2:4715354-4715373 | Msa0391840:intron | 25.0% |
| ! | GAAGTTAGTGTTCATATTTA+GGG | + | chr3_2:4715355-4715374 | Msa0391840:intron | 25.0% |
| ! | CATGGATCATTGTTAATTAA+AGG | + | chr3_2:4715639-4715658 | Msa0391840:intron | 25.0% |
| !! | TAGTTTGTAGAAAATGGAAA+AGG | + | chr3_2:4715705-4715724 | Msa0391840:intron | 25.0% |
| ! | AGTTTGTAGAAAATGGAAAA+GGG | + | chr3_2:4715706-4715725 | Msa0391840:intron | 25.0% |
| ! | TAGGAATAGGAATAACTTTA+CGG | + | chr3_2:4715781-4715800 | Msa0391840:intron | 25.0% |
| ! | TGATTACGAAGAAAAATTGT+GGG | - | chr3_2:4716192-4716211 | None:intergenic | 25.0% |
| !!! | ATACGCACGTTTTTTAAAAG+AGG | - | chr3_2:4714380-4714399 | None:intergenic | 30.0% |
| AGGAAAACCCTGATTATATA+GGG | - | chr3_2:4714460-4714479 | None:intergenic | 30.0% | |
| TAGGAAAACCCTGATTATAT+AGG | - | chr3_2:4714461-4714480 | None:intergenic | 30.0% | |
| ATTTCTTCCACAAGTTTCAA+CGG | - | chr3_2:4714664-4714683 | None:intergenic | 30.0% | |
| CAATCAAATCGTAAGTGTAT+AGG | - | chr3_2:4715122-4715141 | None:intergenic | 30.0% | |
| AGCAGATATATTTAACCCTT+GGG | + | chr3_2:4715221-4715240 | Msa0391840:intron | 30.0% | |
| ! | TTTTTCCTAGATTTTCCCAA+GGG | - | chr3_2:4715239-4715258 | None:intergenic | 30.0% |
| GTTACTTACATATATAGCCT+AGG | + | chr3_2:4715268-4715287 | Msa0391840:intron | 30.0% | |
| !!! | TGATAGGTAACTTTTTTTCC+TGG | - | chr3_2:4715429-4715448 | None:intergenic | 30.0% |
| AAAGTTACCTATCATAGCTT+TGG | + | chr3_2:4715435-4715454 | Msa0391840:intron | 30.0% | |
| ATCATATCCAAAGCTATGAT+AGG | - | chr3_2:4715445-4715464 | None:intergenic | 30.0% | |
| TTTGATTACTGATGACTTCA+TGG | + | chr3_2:4715621-4715640 | Msa0391840:intron | 30.0% | |
| GATCATTGTTAATTAAAGGC+TGG | + | chr3_2:4715643-4715662 | Msa0391840:intron | 30.0% | |
| ! | TTGCACTAGTTTGTAGAAAA+TGG | + | chr3_2:4715699-4715718 | Msa0391840:intron | 30.0% |
| TACAACTAAAGACTTGCATA+TGG | + | chr3_2:4715739-4715758 | Msa0391840:intron | 30.0% | |
| ACAACTAAAGACTTGCATAT+GGG | + | chr3_2:4715740-4715759 | Msa0391840:intron | 30.0% | |
| TAAACCTATATATCCCCTAA+AGG | + | chr3_2:4715848-4715867 | Msa0391840:intron | 30.0% | |
| AGATTGAGAAAATAGCTCAA+GGG | - | chr3_2:4715961-4715980 | None:intergenic | 30.0% | |
| AACATGAGAAATTTGTGGTA+GGG | - | chr3_2:4716160-4716179 | None:intergenic | 30.0% | |
| GTGATTACGAAGAAAAATTG+TGG | - | chr3_2:4716193-4716212 | None:intergenic | 30.0% | |
| TAAAAAACAATAAAGGGTGG+TGG | - | chr3_2:4716286-4716305 | None:intergenic | 30.0% | |
| TGGAGAATATACAATGTATG+TGG | + | chr3_2:4716358-4716377 | Msa0391840:CDS | 30.0% | |
| ATATACAATGTATGTGGATC+AGG | + | chr3_2:4716364-4716383 | Msa0391840:CDS | 30.0% | |
| !!! | ATACGCACGTTTTTTAAAAG+AGG | - | chr3_2:4714380-4714399 | None:intergenic | 30.0% |
| AGGAAAACCCTGATTATATA+GGG | - | chr3_2:4714460-4714479 | None:intergenic | 30.0% | |
| TAGGAAAACCCTGATTATAT+AGG | - | chr3_2:4714461-4714480 | None:intergenic | 30.0% | |
| ATTTCTTCCACAAGTTTCAA+CGG | - | chr3_2:4714664-4714683 | None:intergenic | 30.0% | |
| CAATCAAATCGTAAGTGTAT+AGG | - | chr3_2:4715122-4715141 | None:intergenic | 30.0% | |
| AGCAGATATATTTAACCCTT+GGG | + | chr3_2:4715221-4715240 | Msa0391840:intron | 30.0% | |
| ! | TTTTTCCTAGATTTTCCCAA+GGG | - | chr3_2:4715239-4715258 | None:intergenic | 30.0% |
| GTTACTTACATATATAGCCT+AGG | + | chr3_2:4715268-4715287 | Msa0391840:intron | 30.0% | |
| !!! | TGATAGGTAACTTTTTTTCC+TGG | - | chr3_2:4715429-4715448 | None:intergenic | 30.0% |
| AAAGTTACCTATCATAGCTT+TGG | + | chr3_2:4715435-4715454 | Msa0391840:intron | 30.0% | |
| ATCATATCCAAAGCTATGAT+AGG | - | chr3_2:4715445-4715464 | None:intergenic | 30.0% | |
| TTTGATTACTGATGACTTCA+TGG | + | chr3_2:4715621-4715640 | Msa0391840:intron | 30.0% | |
| GATCATTGTTAATTAAAGGC+TGG | + | chr3_2:4715643-4715662 | Msa0391840:intron | 30.0% | |
| ! | TTGCACTAGTTTGTAGAAAA+TGG | + | chr3_2:4715699-4715718 | Msa0391840:intron | 30.0% |
| TACAACTAAAGACTTGCATA+TGG | + | chr3_2:4715739-4715758 | Msa0391840:intron | 30.0% | |
| ACAACTAAAGACTTGCATAT+GGG | + | chr3_2:4715740-4715759 | Msa0391840:intron | 30.0% | |
| TAAACCTATATATCCCCTAA+AGG | + | chr3_2:4715848-4715867 | Msa0391840:intron | 30.0% | |
| AGATTGAGAAAATAGCTCAA+GGG | - | chr3_2:4715961-4715980 | None:intergenic | 30.0% | |
| AACATGAGAAATTTGTGGTA+GGG | - | chr3_2:4716160-4716179 | None:intergenic | 30.0% | |
| GTGATTACGAAGAAAAATTG+TGG | - | chr3_2:4716193-4716212 | None:intergenic | 30.0% | |
| TAAAAAACAATAAAGGGTGG+TGG | - | chr3_2:4716286-4716305 | None:intergenic | 30.0% | |
| TGGAGAATATACAATGTATG+TGG | + | chr3_2:4716358-4716377 | Msa0391840:CDS | 30.0% | |
| ATATACAATGTATGTGGATC+AGG | + | chr3_2:4716364-4716383 | Msa0391840:CDS | 30.0% | |
| GATACTTTATACGGGATACA+CGG | - | chr3_2:4714438-4714457 | None:intergenic | 35.0% | |
| ! | CAGGGTTTTCCTATTTTCTT+TGG | + | chr3_2:4714468-4714487 | Msa0391840:intron | 35.0% |
| !! | AAGAGTTGGTAGTGATGTTA+GGG | - | chr3_2:4714641-4714660 | None:intergenic | 35.0% |
| TTTGTTCCCTTGACAATAGA+GGG | - | chr3_2:4714795-4714814 | None:intergenic | 35.0% | |
| ! | TTTTGTTCCCTTGACAATAG+AGG | - | chr3_2:4714796-4714815 | None:intergenic | 35.0% |
| CATGCTTCAGTGAAGTATAA+GGG | - | chr3_2:4714827-4714846 | None:intergenic | 35.0% | |
| AAATATATCTGCTCTTCCGA+TGG | - | chr3_2:4715214-4715233 | None:intergenic | 35.0% | |
| GAGCAGATATATTTAACCCT+TGG | + | chr3_2:4715220-4715239 | Msa0391840:intron | 35.0% | |
| TTTAACCCTTGGGAAAATCT+AGG | + | chr3_2:4715231-4715250 | Msa0391840:intron | 35.0% | |
| ! | CTTTTTCCTAGATTTTCCCA+AGG | - | chr3_2:4715240-4715259 | None:intergenic | 35.0% |
| ! | TAGAGTACTATTTGACCCTT+TGG | + | chr3_2:4715398-4715417 | Msa0391840:intron | 35.0% |
| ! | AGAGTACTATTTGACCCTTT+GGG | + | chr3_2:4715399-4715418 | Msa0391840:intron | 35.0% |
| ! | TTTTTCCTGGATTTCCCAAA+GGG | - | chr3_2:4715416-4715435 | None:intergenic | 35.0% |
| !!! | TTTTTTCCTGGATTTCCCAA+AGG | - | chr3_2:4715417-4715436 | None:intergenic | 35.0% |
| AAAACTTAGTGTCCATACGT+AGG | + | chr3_2:4715521-4715540 | Msa0391840:intron | 35.0% | |
| AAACTTAGTGTCCATACGTA+GGG | + | chr3_2:4715522-4715541 | Msa0391840:intron | 35.0% | |
| CATTGTTAATTAAAGGCTGG+TGG | + | chr3_2:4715646-4715665 | Msa0391840:intron | 35.0% | |
| !! | GGAGTTTTTGCTATAGGAAT+AGG | + | chr3_2:4715768-4715787 | Msa0391840:intron | 35.0% |
| TGAAGTCGTTCAAATGTGAA+TGG | - | chr3_2:4715810-4715829 | None:intergenic | 35.0% | |
| TTTGAATGCAGCATCCTTTA+GGG | - | chr3_2:4715865-4715884 | None:intergenic | 35.0% | |
| ! | TTTTGAATGCAGCATCCTTT+AGG | - | chr3_2:4715866-4715885 | None:intergenic | 35.0% |
| TTGACACCTATGACTTCTTT+AGG | - | chr3_2:4715913-4715932 | None:intergenic | 35.0% | |
| AGAAGTCATAGGTGTCAATT+TGG | + | chr3_2:4715915-4715934 | Msa0391840:intron | 35.0% | |
| ! | TCAATTTGGTGAACTAGCTA+GGG | + | chr3_2:4715929-4715948 | Msa0391840:intron | 35.0% |
| CAGATTGAGAAAATAGCTCA+AGG | - | chr3_2:4715962-4715981 | None:intergenic | 35.0% | |
| AAAATACCCATGCCACATAA+GGG | - | chr3_2:4716053-4716072 | None:intergenic | 35.0% | |
| AAAAATACCCATGCCACATA+AGG | - | chr3_2:4716054-4716073 | None:intergenic | 35.0% | |
| GAACATGAGAAATTTGTGGT+AGG | - | chr3_2:4716161-4716180 | None:intergenic | 35.0% | |
| GAAGGAACATGAGAAATTTG+TGG | - | chr3_2:4716165-4716184 | None:intergenic | 35.0% | |
| AGAAAAATTGTGGGTTTGGA+AGG | - | chr3_2:4716183-4716202 | None:intergenic | 35.0% | |
| ACGAAGAAAAATTGTGGGTT+TGG | - | chr3_2:4716187-4716206 | None:intergenic | 35.0% | |
| AAGTAGCTTGAAGTTGAAGA+GGG | - | chr3_2:4716230-4716249 | None:intergenic | 35.0% | |
| CTTCTTCTTCCTTTCAATTC+AGG | + | chr3_2:4716256-4716275 | Msa0391840:intron | 35.0% | |
| GATACTTTATACGGGATACA+CGG | - | chr3_2:4714438-4714457 | None:intergenic | 35.0% | |
| ! | CAGGGTTTTCCTATTTTCTT+TGG | + | chr3_2:4714468-4714487 | Msa0391840:intron | 35.0% |
| !! | AAGAGTTGGTAGTGATGTTA+GGG | - | chr3_2:4714641-4714660 | None:intergenic | 35.0% |
| TTTGTTCCCTTGACAATAGA+GGG | - | chr3_2:4714795-4714814 | None:intergenic | 35.0% | |
| ! | TTTTGTTCCCTTGACAATAG+AGG | - | chr3_2:4714796-4714815 | None:intergenic | 35.0% |
| CATGCTTCAGTGAAGTATAA+GGG | - | chr3_2:4714827-4714846 | None:intergenic | 35.0% | |
| AAATATATCTGCTCTTCCGA+TGG | - | chr3_2:4715214-4715233 | None:intergenic | 35.0% | |
| GAGCAGATATATTTAACCCT+TGG | + | chr3_2:4715220-4715239 | Msa0391840:intron | 35.0% | |
| TTTAACCCTTGGGAAAATCT+AGG | + | chr3_2:4715231-4715250 | Msa0391840:intron | 35.0% | |
| ! | CTTTTTCCTAGATTTTCCCA+AGG | - | chr3_2:4715240-4715259 | None:intergenic | 35.0% |
| ! | TAGAGTACTATTTGACCCTT+TGG | + | chr3_2:4715398-4715417 | Msa0391840:intron | 35.0% |
| ! | AGAGTACTATTTGACCCTTT+GGG | + | chr3_2:4715399-4715418 | Msa0391840:intron | 35.0% |
| ! | TTTTTCCTGGATTTCCCAAA+GGG | - | chr3_2:4715416-4715435 | None:intergenic | 35.0% |
| !!! | TTTTTTCCTGGATTTCCCAA+AGG | - | chr3_2:4715417-4715436 | None:intergenic | 35.0% |
| AAAACTTAGTGTCCATACGT+AGG | + | chr3_2:4715521-4715540 | Msa0391840:intron | 35.0% | |
| AAACTTAGTGTCCATACGTA+GGG | + | chr3_2:4715522-4715541 | Msa0391840:intron | 35.0% | |
| CATTGTTAATTAAAGGCTGG+TGG | + | chr3_2:4715646-4715665 | Msa0391840:intron | 35.0% | |
| !! | GGAGTTTTTGCTATAGGAAT+AGG | + | chr3_2:4715768-4715787 | Msa0391840:intron | 35.0% |
| TGAAGTCGTTCAAATGTGAA+TGG | - | chr3_2:4715810-4715829 | None:intergenic | 35.0% | |
| TTTGAATGCAGCATCCTTTA+GGG | - | chr3_2:4715865-4715884 | None:intergenic | 35.0% | |
| ! | TTTTGAATGCAGCATCCTTT+AGG | - | chr3_2:4715866-4715885 | None:intergenic | 35.0% |
| TTGACACCTATGACTTCTTT+AGG | - | chr3_2:4715913-4715932 | None:intergenic | 35.0% | |
| AGAAGTCATAGGTGTCAATT+TGG | + | chr3_2:4715915-4715934 | Msa0391840:intron | 35.0% | |
| ! | TCAATTTGGTGAACTAGCTA+GGG | + | chr3_2:4715929-4715948 | Msa0391840:intron | 35.0% |
| CAGATTGAGAAAATAGCTCA+AGG | - | chr3_2:4715962-4715981 | None:intergenic | 35.0% | |
| AAAATACCCATGCCACATAA+GGG | - | chr3_2:4716053-4716072 | None:intergenic | 35.0% | |
| AAAAATACCCATGCCACATA+AGG | - | chr3_2:4716054-4716073 | None:intergenic | 35.0% | |
| GAACATGAGAAATTTGTGGT+AGG | - | chr3_2:4716161-4716180 | None:intergenic | 35.0% | |
| GAAGGAACATGAGAAATTTG+TGG | - | chr3_2:4716165-4716184 | None:intergenic | 35.0% | |
| AGAAAAATTGTGGGTTTGGA+AGG | - | chr3_2:4716183-4716202 | None:intergenic | 35.0% | |
| ACGAAGAAAAATTGTGGGTT+TGG | - | chr3_2:4716187-4716206 | None:intergenic | 35.0% | |
| AAGTAGCTTGAAGTTGAAGA+GGG | - | chr3_2:4716230-4716249 | None:intergenic | 35.0% | |
| CTTCTTCTTCCTTTCAATTC+AGG | + | chr3_2:4716256-4716275 | Msa0391840:intron | 35.0% | |
| TGTCGATGAAACAGCAACAT+CGG | - | chr3_2:4714593-4714612 | None:intergenic | 40.0% | |
| !! | TGTTGCTGTTTCATCGACAA+AGG | + | chr3_2:4714594-4714613 | Msa0391840:intron | 40.0% |
| !! | TGATGTTAGGGTTTTGGTAG+TGG | - | chr3_2:4714629-4714648 | None:intergenic | 40.0% |
| !! | TGGTAGTGATGTTAGGGTTT+TGG | - | chr3_2:4714635-4714654 | None:intergenic | 40.0% |
| !! | GAAGAGTTGGTAGTGATGTT+AGG | - | chr3_2:4714642-4714661 | None:intergenic | 40.0% |
| ACAAGTTTCAACGGAAGAGT+TGG | - | chr3_2:4714655-4714674 | None:intergenic | 40.0% | |
| AACTCTTCCGTTGAAACTTG+TGG | + | chr3_2:4714654-4714673 | Msa0391840:intron | 40.0% | |
| ! | AAGTTGAAGGAGTTGGTTCA+CGG | - | chr3_2:4714701-4714720 | None:intergenic | 40.0% |
| CAACTCCTTCAACTTAAACG+CGG | + | chr3_2:4714706-4714725 | Msa0391840:intron | 40.0% | |
| TTGTCAAGGGAACAAAACTC+AGG | + | chr3_2:4714799-4714818 | Msa0391840:intron | 40.0% | |
| CCATGCTTCAGTGAAGTATA+AGG | - | chr3_2:4714828-4714847 | None:intergenic | 40.0% | |
| CCTTATACTTCACTGAAGCA+TGG | + | chr3_2:4714825-4714844 | Msa0391840:intron | 40.0% | |
| ! | CGCTATGTTAGTGAAGTGTT+CGG | + | chr3_2:4714851-4714870 | Msa0391840:intron | 40.0% |
| ! | TTGATAAACGGTTTGCTCTG+TGG | + | chr3_2:4715178-4715197 | Msa0391840:intron | 40.0% |
| ! | AGGGTACTTGTTCTTAGAAG+AGG | + | chr3_2:4715374-4715393 | Msa0391840:intron | 40.0% |
| GGGTACTTGTTCTTAGAAGA+GGG | + | chr3_2:4715375-4715394 | Msa0391840:intron | 40.0% | |
| AACTTAGTGTCCATACGTAG+GGG | + | chr3_2:4715523-4715542 | Msa0391840:intron | 40.0% | |
| ! | GCATCCTTTAGGGGATATAT+AGG | - | chr3_2:4715855-4715874 | None:intergenic | 40.0% |
| TTGAATGCAGCATCCTTTAG+GGG | - | chr3_2:4715864-4715883 | None:intergenic | 40.0% | |
| CTATGACTTCTTTAGGTGGA+GGG | - | chr3_2:4715906-4715925 | None:intergenic | 40.0% | |
| ACACCTATGACTTCTTTAGG+TGG | - | chr3_2:4715910-4715929 | None:intergenic | 40.0% | |
| ! | GTCAATTTGGTGAACTAGCT+AGG | + | chr3_2:4715928-4715947 | Msa0391840:intron | 40.0% |
| AAATACCCATGCCACATAAG+GGG | - | chr3_2:4716052-4716071 | None:intergenic | 40.0% | |
| GAGATCTAAGAGAGAGAAGA+GGG | - | chr3_2:4716105-4716124 | None:intergenic | 40.0% | |
| AGAGTGAGAGGAAGAAGAAA+GGG | - | chr3_2:4716127-4716146 | None:intergenic | 40.0% | |
| GAAGTAGCTTGAAGTTGAAG+AGG | - | chr3_2:4716231-4716250 | None:intergenic | 40.0% | |
| !! | TGATTTCTAGCTGATGCAAC+TGG | + | chr3_2:4716338-4716357 | Msa0391840:intron | 40.0% |
| GTTATTCTCACCCGTTACAA+CGG | + | chr3_2:4716476-4716495 | Msa0391840:CDS | 40.0% | |
| TGCCAATGCTATGTTGTACA+TGG | + | chr3_2:4716520-4716539 | Msa0391840:CDS | 40.0% | |
| TGCCATGTACAACATAGCAT+TGG | - | chr3_2:4716525-4716544 | None:intergenic | 40.0% | |
| TGTCGATGAAACAGCAACAT+CGG | - | chr3_2:4714593-4714612 | None:intergenic | 40.0% | |
| !! | TGTTGCTGTTTCATCGACAA+AGG | + | chr3_2:4714594-4714613 | Msa0391840:intron | 40.0% |
| !! | TGATGTTAGGGTTTTGGTAG+TGG | - | chr3_2:4714629-4714648 | None:intergenic | 40.0% |
| !! | TGGTAGTGATGTTAGGGTTT+TGG | - | chr3_2:4714635-4714654 | None:intergenic | 40.0% |
| !! | GAAGAGTTGGTAGTGATGTT+AGG | - | chr3_2:4714642-4714661 | None:intergenic | 40.0% |
| ACAAGTTTCAACGGAAGAGT+TGG | - | chr3_2:4714655-4714674 | None:intergenic | 40.0% | |
| AACTCTTCCGTTGAAACTTG+TGG | + | chr3_2:4714654-4714673 | Msa0391840:intron | 40.0% | |
| ! | AAGTTGAAGGAGTTGGTTCA+CGG | - | chr3_2:4714701-4714720 | None:intergenic | 40.0% |
| CAACTCCTTCAACTTAAACG+CGG | + | chr3_2:4714706-4714725 | Msa0391840:intron | 40.0% | |
| TTGTCAAGGGAACAAAACTC+AGG | + | chr3_2:4714799-4714818 | Msa0391840:intron | 40.0% | |
| CCATGCTTCAGTGAAGTATA+AGG | - | chr3_2:4714828-4714847 | None:intergenic | 40.0% | |
| CCTTATACTTCACTGAAGCA+TGG | + | chr3_2:4714825-4714844 | Msa0391840:intron | 40.0% | |
| ! | CGCTATGTTAGTGAAGTGTT+CGG | + | chr3_2:4714851-4714870 | Msa0391840:intron | 40.0% |
| ! | TTGATAAACGGTTTGCTCTG+TGG | + | chr3_2:4715178-4715197 | Msa0391840:intron | 40.0% |
| ! | AGGGTACTTGTTCTTAGAAG+AGG | + | chr3_2:4715374-4715393 | Msa0391840:intron | 40.0% |
| GGGTACTTGTTCTTAGAAGA+GGG | + | chr3_2:4715375-4715394 | Msa0391840:intron | 40.0% | |
| AACTTAGTGTCCATACGTAG+GGG | + | chr3_2:4715523-4715542 | Msa0391840:intron | 40.0% | |
| ! | GCATCCTTTAGGGGATATAT+AGG | - | chr3_2:4715855-4715874 | None:intergenic | 40.0% |
| TTGAATGCAGCATCCTTTAG+GGG | - | chr3_2:4715864-4715883 | None:intergenic | 40.0% | |
| CTATGACTTCTTTAGGTGGA+GGG | - | chr3_2:4715906-4715925 | None:intergenic | 40.0% | |
| ACACCTATGACTTCTTTAGG+TGG | - | chr3_2:4715910-4715929 | None:intergenic | 40.0% | |
| ! | GTCAATTTGGTGAACTAGCT+AGG | + | chr3_2:4715928-4715947 | Msa0391840:intron | 40.0% |
| AAATACCCATGCCACATAAG+GGG | - | chr3_2:4716052-4716071 | None:intergenic | 40.0% | |
| GAGATCTAAGAGAGAGAAGA+GGG | - | chr3_2:4716105-4716124 | None:intergenic | 40.0% | |
| AGAGTGAGAGGAAGAAGAAA+GGG | - | chr3_2:4716127-4716146 | None:intergenic | 40.0% | |
| GAAGTAGCTTGAAGTTGAAG+AGG | - | chr3_2:4716231-4716250 | None:intergenic | 40.0% | |
| !! | TGATTTCTAGCTGATGCAAC+TGG | + | chr3_2:4716338-4716357 | Msa0391840:intron | 40.0% |
| GTTATTCTCACCCGTTACAA+CGG | + | chr3_2:4716476-4716495 | Msa0391840:CDS | 40.0% | |
| TGCCAATGCTATGTTGTACA+TGG | + | chr3_2:4716520-4716539 | Msa0391840:CDS | 40.0% | |
| TGCCATGTACAACATAGCAT+TGG | - | chr3_2:4716525-4716544 | None:intergenic | 40.0% | |
| ACGGGATACACGGTTAACTT+GGG | - | chr3_2:4714428-4714447 | None:intergenic | 45.0% | |
| TACGGGATACACGGTTAACT+TGG | - | chr3_2:4714429-4714448 | None:intergenic | 45.0% | |
| ! | CGCTCTAAACATTCAGAACG+AGG | + | chr3_2:4714547-4714566 | Msa0391840:intron | 45.0% |
| ACATTCAGAACGAGGTAGCA+TGG | + | chr3_2:4714555-4714574 | Msa0391840:intron | 45.0% | |
| CATTCAGAACGAGGTAGCAT+GGG | + | chr3_2:4714556-4714575 | Msa0391840:intron | 45.0% | |
| !! | TGCTGTTTCATCGACAAAGG+AGG | + | chr3_2:4714597-4714616 | Msa0391840:intron | 45.0% |
| !!! | TGTTAGGGTTTTGGTAGTGG+TGG | - | chr3_2:4714626-4714645 | None:intergenic | 45.0% |
| ! | AGTTGAAGGAGTTGGTTCAC+GGG | - | chr3_2:4714700-4714719 | None:intergenic | 45.0% |
| !! | CGCGTTTAAGTTGAAGGAGT+TGG | - | chr3_2:4714708-4714727 | None:intergenic | 45.0% |
| !! | TGCATCCGCGTTTAAGTTGA+AGG | - | chr3_2:4714714-4714733 | None:intergenic | 45.0% |
| TTAAACGCGGATGCAAGTCA+TGG | + | chr3_2:4714719-4714738 | Msa0391840:intron | 45.0% | |
| GCAGTTGAGAATGTGCTTCT+TGG | - | chr3_2:4714773-4714792 | None:intergenic | 45.0% | |
| TCAACTGCCCTCTATTGTCA+AGG | + | chr3_2:4714785-4714804 | Msa0391840:intron | 45.0% | |
| CAACTGCCCTCTATTGTCAA+GGG | + | chr3_2:4714786-4714805 | Msa0391840:intron | 45.0% | |
| ! | ATAAACGGTTTGCTCTGTGG+TGG | + | chr3_2:4715181-4715200 | Msa0391840:intron | 45.0% |
| TATCTGCTCTTCCGATGGAA+GGG | - | chr3_2:4715209-4715228 | None:intergenic | 45.0% | |
| ATATCTGCTCTTCCGATGGA+AGG | - | chr3_2:4715210-4715229 | None:intergenic | 45.0% | |
| ! | TTTGACCCTTTGGGAAATCC+AGG | + | chr3_2:4715408-4715427 | Msa0391840:intron | 45.0% |
| AAAGACTTGCATATGGGAGC+AGG | + | chr3_2:4715746-4715765 | Msa0391840:intron | 45.0% | |
| AAGACTTGCATATGGGAGCA+GGG | + | chr3_2:4715747-4715766 | Msa0391840:intron | 45.0% | |
| !! | GAGCAGGGAGTTTTTGCTAT+AGG | + | chr3_2:4715762-4715781 | Msa0391840:intron | 45.0% |
| CCTATGACTTCTTTAGGTGG+AGG | - | chr3_2:4715907-4715926 | None:intergenic | 45.0% | |
| CCTCCACCTAAAGAAGTCAT+AGG | + | chr3_2:4715904-4715923 | Msa0391840:intron | 45.0% | |
| TGGAAGAGTGGTATGGAGAA+GGG | - | chr3_2:4716025-4716044 | None:intergenic | 45.0% | |
| ATGGAAGAGTGGTATGGAGA+AGG | - | chr3_2:4716026-4716045 | None:intergenic | 45.0% | |
| ! | ATAAGGGGTGTATGGAAGAG+TGG | - | chr3_2:4716037-4716056 | None:intergenic | 45.0% |
| TCTTCCATACACCCCTTATG+TGG | + | chr3_2:4716038-4716057 | Msa0391840:intron | 45.0% | |
| ATACACCCCTTATGTGGCAT+GGG | + | chr3_2:4716044-4716063 | Msa0391840:intron | 45.0% | |
| GGAGATCTAAGAGAGAGAAG+AGG | - | chr3_2:4716106-4716125 | None:intergenic | 45.0% | |
| CAGAGTGAGAGGAAGAAGAA+AGG | - | chr3_2:4716128-4716147 | None:intergenic | 45.0% | |
| AATTTGTGGTAGGGAGTGAG+AGG | - | chr3_2:4716151-4716170 | None:intergenic | 45.0% | |
| GGTGGTGTACCTGAATTGAA+AGG | - | chr3_2:4716268-4716287 | None:intergenic | 45.0% | |
| ATTGGCAAACCTGTCATTGG+AGG | - | chr3_2:4716507-4716526 | None:intergenic | 45.0% | |
| !! | AGCATTGGCAAACCTGTCAT+TGG | - | chr3_2:4716510-4716529 | None:intergenic | 45.0% |
| TGCTATGTTGTACATGGCAG+AGG | + | chr3_2:4716526-4716545 | Msa0391840:CDS | 45.0% | |
| TATGTTGTACATGGCAGAGG+AGG | + | chr3_2:4716529-4716548 | Msa0391840:CDS | 45.0% | |
| CCAATTCCTGCATTTGCTTG+AGG | - | chr3_2:4716577-4716596 | None:intergenic | 45.0% | |
| CCTCAAGCAAATGCAGGAAT+TGG | + | chr3_2:4716574-4716593 | Msa0391840:CDS | 45.0% | |
| ACGGGATACACGGTTAACTT+GGG | - | chr3_2:4714428-4714447 | None:intergenic | 45.0% | |
| TACGGGATACACGGTTAACT+TGG | - | chr3_2:4714429-4714448 | None:intergenic | 45.0% | |
| ! | CGCTCTAAACATTCAGAACG+AGG | + | chr3_2:4714547-4714566 | Msa0391840:intron | 45.0% |
| ACATTCAGAACGAGGTAGCA+TGG | + | chr3_2:4714555-4714574 | Msa0391840:intron | 45.0% | |
| CATTCAGAACGAGGTAGCAT+GGG | + | chr3_2:4714556-4714575 | Msa0391840:intron | 45.0% | |
| !! | TGCTGTTTCATCGACAAAGG+AGG | + | chr3_2:4714597-4714616 | Msa0391840:intron | 45.0% |
| !!! | TGTTAGGGTTTTGGTAGTGG+TGG | - | chr3_2:4714626-4714645 | None:intergenic | 45.0% |
| ! | AGTTGAAGGAGTTGGTTCAC+GGG | - | chr3_2:4714700-4714719 | None:intergenic | 45.0% |
| !! | CGCGTTTAAGTTGAAGGAGT+TGG | - | chr3_2:4714708-4714727 | None:intergenic | 45.0% |
| !! | TGCATCCGCGTTTAAGTTGA+AGG | - | chr3_2:4714714-4714733 | None:intergenic | 45.0% |
| TTAAACGCGGATGCAAGTCA+TGG | + | chr3_2:4714719-4714738 | Msa0391840:intron | 45.0% | |
| GCAGTTGAGAATGTGCTTCT+TGG | - | chr3_2:4714773-4714792 | None:intergenic | 45.0% | |
| TCAACTGCCCTCTATTGTCA+AGG | + | chr3_2:4714785-4714804 | Msa0391840:intron | 45.0% | |
| CAACTGCCCTCTATTGTCAA+GGG | + | chr3_2:4714786-4714805 | Msa0391840:intron | 45.0% | |
| ! | ATAAACGGTTTGCTCTGTGG+TGG | + | chr3_2:4715181-4715200 | Msa0391840:intron | 45.0% |
| TATCTGCTCTTCCGATGGAA+GGG | - | chr3_2:4715209-4715228 | None:intergenic | 45.0% | |
| ATATCTGCTCTTCCGATGGA+AGG | - | chr3_2:4715210-4715229 | None:intergenic | 45.0% | |
| ! | TTTGACCCTTTGGGAAATCC+AGG | + | chr3_2:4715408-4715427 | Msa0391840:intron | 45.0% |
| AAAGACTTGCATATGGGAGC+AGG | + | chr3_2:4715746-4715765 | Msa0391840:intron | 45.0% | |
| AAGACTTGCATATGGGAGCA+GGG | + | chr3_2:4715747-4715766 | Msa0391840:intron | 45.0% | |
| !! | GAGCAGGGAGTTTTTGCTAT+AGG | + | chr3_2:4715762-4715781 | Msa0391840:intron | 45.0% |
| CCTATGACTTCTTTAGGTGG+AGG | - | chr3_2:4715907-4715926 | None:intergenic | 45.0% | |
| CCTCCACCTAAAGAAGTCAT+AGG | + | chr3_2:4715904-4715923 | Msa0391840:intron | 45.0% | |
| TGGAAGAGTGGTATGGAGAA+GGG | - | chr3_2:4716025-4716044 | None:intergenic | 45.0% | |
| ATGGAAGAGTGGTATGGAGA+AGG | - | chr3_2:4716026-4716045 | None:intergenic | 45.0% | |
| ! | ATAAGGGGTGTATGGAAGAG+TGG | - | chr3_2:4716037-4716056 | None:intergenic | 45.0% |
| TCTTCCATACACCCCTTATG+TGG | + | chr3_2:4716038-4716057 | Msa0391840:intron | 45.0% | |
| ATACACCCCTTATGTGGCAT+GGG | + | chr3_2:4716044-4716063 | Msa0391840:intron | 45.0% | |
| GGAGATCTAAGAGAGAGAAG+AGG | - | chr3_2:4716106-4716125 | None:intergenic | 45.0% | |
| CAGAGTGAGAGGAAGAAGAA+AGG | - | chr3_2:4716128-4716147 | None:intergenic | 45.0% | |
| AATTTGTGGTAGGGAGTGAG+AGG | - | chr3_2:4716151-4716170 | None:intergenic | 45.0% | |
| GGTGGTGTACCTGAATTGAA+AGG | - | chr3_2:4716268-4716287 | None:intergenic | 45.0% | |
| ATTGGCAAACCTGTCATTGG+AGG | - | chr3_2:4716507-4716526 | None:intergenic | 45.0% | |
| !! | AGCATTGGCAAACCTGTCAT+TGG | - | chr3_2:4716510-4716529 | None:intergenic | 45.0% |
| TGCTATGTTGTACATGGCAG+AGG | + | chr3_2:4716526-4716545 | Msa0391840:CDS | 45.0% | |
| TATGTTGTACATGGCAGAGG+AGG | + | chr3_2:4716529-4716548 | Msa0391840:CDS | 45.0% | |
| CCAATTCCTGCATTTGCTTG+AGG | - | chr3_2:4716577-4716596 | None:intergenic | 45.0% | |
| CCTCAAGCAAATGCAGGAAT+TGG | + | chr3_2:4716574-4716593 | Msa0391840:CDS | 45.0% | |
| ! | CGGGATACACGGTTAACTTG+GGG | - | chr3_2:4714427-4714446 | None:intergenic | 50.0% |
| AAACAGCAACATCGGATCCC+CGG | - | chr3_2:4714585-4714604 | None:intergenic | 50.0% | |
| CATTGCATAGCCCCTACGTA+TGG | - | chr3_2:4715536-4715555 | None:intergenic | 50.0% | |
| TTAGGTGGAGGGTGAAGATG+AGG | - | chr3_2:4715895-4715914 | None:intergenic | 50.0% | |
| GGGTGTATGGAAGAGTGGTA+TGG | - | chr3_2:4716032-4716051 | None:intergenic | 50.0% | |
| ! | CATGCCACATAAGGGGTGTA+TGG | - | chr3_2:4716045-4716064 | None:intergenic | 50.0% |
| CATACACCCCTTATGTGGCA+TGG | + | chr3_2:4716043-4716062 | Msa0391840:intron | 50.0% | |
| GAAGAGGGCGAAGAAAGTTG+TGG | - | chr3_2:4716215-4716234 | None:intergenic | 50.0% | |
| CTTTCGCTACAACTACGCTC+AGG | - | chr3_2:4716431-4716450 | None:intergenic | 50.0% | |
| !! | AGTTGTAGCGAAAGAGCACC+TGG | + | chr3_2:4716437-4716456 | Msa0391840:CDS | 50.0% |
| !! | GTTGTAGCGAAAGAGCACCT+GGG | + | chr3_2:4716438-4716457 | Msa0391840:CDS | 50.0% |
| TGGAGGCAATGCCGTTGTAA+CGG | - | chr3_2:4716490-4716509 | None:intergenic | 50.0% | |
| TGAGGTCCTCAAGCAAATGC+AGG | + | chr3_2:4716568-4716587 | Msa0391840:CDS | 50.0% | |
| ! | CGGGATACACGGTTAACTTG+GGG | - | chr3_2:4714427-4714446 | None:intergenic | 50.0% |
| AAACAGCAACATCGGATCCC+CGG | - | chr3_2:4714585-4714604 | None:intergenic | 50.0% | |
| CATTGCATAGCCCCTACGTA+TGG | - | chr3_2:4715536-4715555 | None:intergenic | 50.0% | |
| TTAGGTGGAGGGTGAAGATG+AGG | - | chr3_2:4715895-4715914 | None:intergenic | 50.0% | |
| GGGTGTATGGAAGAGTGGTA+TGG | - | chr3_2:4716032-4716051 | None:intergenic | 50.0% | |
| ! | CATGCCACATAAGGGGTGTA+TGG | - | chr3_2:4716045-4716064 | None:intergenic | 50.0% |
| CATACACCCCTTATGTGGCA+TGG | + | chr3_2:4716043-4716062 | Msa0391840:intron | 50.0% | |
| GAAGAGGGCGAAGAAAGTTG+TGG | - | chr3_2:4716215-4716234 | None:intergenic | 50.0% | |
| CTTTCGCTACAACTACGCTC+AGG | - | chr3_2:4716431-4716450 | None:intergenic | 50.0% | |
| !! | AGTTGTAGCGAAAGAGCACC+TGG | + | chr3_2:4716437-4716456 | Msa0391840:CDS | 50.0% |
| !! | GTTGTAGCGAAAGAGCACCT+GGG | + | chr3_2:4716438-4716457 | Msa0391840:CDS | 50.0% |
| TGGAGGCAATGCCGTTGTAA+CGG | - | chr3_2:4716490-4716509 | None:intergenic | 50.0% | |
| TGAGGTCCTCAAGCAAATGC+AGG | + | chr3_2:4716568-4716587 | Msa0391840:CDS | 50.0% | |
| AACGAGGTAGCATGGGCAAC+CGG | + | chr3_2:4714563-4714582 | Msa0391840:intron | 55.0% | |
| GGTTCACGGGTAGTCTAAGC+AGG | - | chr3_2:4714687-4714706 | None:intergenic | 55.0% | |
| ! | CTGTGGTGGAACCCTTCCAT+CGG | + | chr3_2:4715195-4715214 | Msa0391840:intron | 55.0% |
| GGGTGAGAATAACGCGTGCT+TGG | - | chr3_2:4716469-4716488 | None:intergenic | 55.0% | |
| GGAGGCAATGCCGTTGTAAC+GGG | - | chr3_2:4716489-4716508 | None:intergenic | 55.0% | |
| ACGGCATTGCCTCCAATGAC+AGG | + | chr3_2:4716495-4716514 | Msa0391840:CDS | 55.0% | |
| ! | GGTTGCTTCTAGCTGTGCTG+AGG | + | chr3_2:4716550-4716569 | Msa0391840:CDS | 55.0% |
| AACGAGGTAGCATGGGCAAC+CGG | + | chr3_2:4714563-4714582 | Msa0391840:intron | 55.0% | |
| GGTTCACGGGTAGTCTAAGC+AGG | - | chr3_2:4714687-4714706 | None:intergenic | 55.0% | |
| ! | CTGTGGTGGAACCCTTCCAT+CGG | + | chr3_2:4715195-4715214 | Msa0391840:intron | 55.0% |
| GGGTGAGAATAACGCGTGCT+TGG | - | chr3_2:4716469-4716488 | None:intergenic | 55.0% | |
| GGAGGCAATGCCGTTGTAAC+GGG | - | chr3_2:4716489-4716508 | None:intergenic | 55.0% | |
| ACGGCATTGCCTCCAATGAC+AGG | + | chr3_2:4716495-4716514 | Msa0391840:CDS | 55.0% | |
| ! | GGTTGCTTCTAGCTGTGCTG+AGG | + | chr3_2:4716550-4716569 | Msa0391840:CDS | 55.0% |
| ACGAGGTAGCATGGGCAACC+GGG | + | chr3_2:4714564-4714583 | Msa0391840:intron | 60.0% | |
| GGAGTGAGAGGCAGAGTGAG+AGG | - | chr3_2:4716139-4716158 | None:intergenic | 60.0% | |
| ACGAGGTAGCATGGGCAACC+GGG | + | chr3_2:4714564-4714583 | Msa0391840:intron | 60.0% | |
| GGAGTGAGAGGCAGAGTGAG+AGG | - | chr3_2:4716139-4716158 | None:intergenic | 60.0% | |
| CGAGGTAGCATGGGCAACCG+GGG | + | chr3_2:4714565-4714584 | Msa0391840:intron | 65.0% | |
| CGAGGTAGCATGGGCAACCG+GGG | + | chr3_2:4714565-4714584 | Msa0391840:intron | 65.0% | |
| ACGCGTGCTTGGTCACGCCC+AGG | - | chr3_2:4716458-4716477 | None:intergenic | 70.0% | |
| ACGCGTGCTTGGTCACGCCC+AGG | - | chr3_2:4716458-4716477 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 4714341 | 4716610 | 4714341 | ID=Msa0391840;Name=Msa0391840 |
| chr3_2 | mRNA | 4714341 | 4716610 | 4714341 | ID=Msa0391840-mRNA-1;Parent=Msa0391840;Name=Msa0391840-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0|0|0|0.5|1|1|2|0|88 |
| chr3_2 | exon | 4714341 | 4714344 | 4714341 | ID=Msa0391840-mRNA-1:exon:1100;Parent=Msa0391840-mRNA-1 |
| chr3_2 | exon | 4716348 | 4716610 | 4716348 | ID=Msa0391840-mRNA-1:exon:1101;Parent=Msa0391840-mRNA-1 |
| chr3_2 | CDS | 4714341 | 4714344 | 4714341 | ID=Msa0391840-mRNA-1:cds;Parent=Msa0391840-mRNA-1 |
| chr3_2 | CDS | 4716348 | 4716610 | 4716348 | ID=Msa0391840-mRNA-1:cds;Parent=Msa0391840-mRNA-1 |
| Gene Sequence |
| Protein sequence |
