Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0391720 | XP_013460852.1 | 90.698 | 86 | 8 | 0 | 3 | 88 | 77 | 162 | 2.21e-50 | 166 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0391720 | sp|Q9LX15|DFC_ARATH | 42.667 | 75 | 43 | 0 | 6 | 80 | 80 | 154 | 4.89e-13 | 63.5 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0391720 | B7FN25 | 90.698 | 86 | 8 | 0 | 3 | 88 | 77 | 162 | 1.06e-50 | 166 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0391720 | Msa0391780 | 0.973161 | 5.803831e-136 | -8.615850e-47 |
| Msa0391720 | Msa0391840 | 0.953218 | 4.444217e-111 | -8.615850e-47 |
| Msa0391720 | Msa0391880 | 0.955595 | 2.111489e-113 | -8.615850e-47 |
| Msa0345570 | Msa0391720 | 0.942991 | 2.683613e-102 | -8.615850e-47 |
| Msa0346460 | Msa0391720 | 0.929296 | 8.520158e-93 | -8.615850e-47 |
| Msa0346560 | Msa0391720 | 0.899623 | 1.649993e-77 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0391720 | MtrunA17_Chr3g0115561 | 90.698 | 86 | 8 | 0 | 3 | 88 | 77 | 162 | 2.03e-54 | 166 |
| Msa0391720 | MtrunA17_Chr3g0124301 | 35.802 | 81 | 50 | 2 | 1 | 79 | 72 | 152 | 2.13e-14 | 64.3 |
| Msa0391720 | MtrunA17_Chr2g0283801 | 37.349 | 83 | 49 | 1 | 2 | 81 | 75 | 157 | 1.27e-12 | 59.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0391720 | AT4G08685.1 | 44.048 | 84 | 47 | 0 | 3 | 86 | 76 | 159 | 1.71e-22 | 85.5 |
| Msa0391720 | AT1G78040.1 | 40.230 | 87 | 51 | 1 | 1 | 87 | 78 | 163 | 1.60e-15 | 67.8 |
| Msa0391720 | AT1G78040.3 | 40.230 | 87 | 51 | 1 | 1 | 87 | 78 | 163 | 1.60e-15 | 67.8 |
| Msa0391720 | AT1G78040.2 | 40.230 | 87 | 51 | 1 | 1 | 87 | 78 | 163 | 1.60e-15 | 67.8 |
| Msa0391720 | AT5G10130.1 | 42.667 | 75 | 43 | 0 | 6 | 80 | 80 | 154 | 4.97e-14 | 63.5 |
Find 22 sgRNAs with CRISPR-Local
Find 352 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGATTTCTAGCTGATGCAAC+TGG | 0.377402 | 3_2:+4500847 | Msa0391720:intron |
| CCTCAAGCAAATGCAGGAAT+TGG | 0.399028 | 3_2:+4501083 | Msa0391720:CDS |
| GGAGGCAATGCCGTTGTAAC+GGG | 0.439821 | 3_2:-4500995 | None:intergenic |
| AGTTGTAGCGAAAGAGCACC+TGG | 0.442879 | 3_2:+4500946 | Msa0391720:CDS |
| ATATACAATGTATGTGGATC+AGG | 0.452269 | 3_2:+4500873 | Msa0391720:CDS |
| AGCATTGGCAAACCTGTCAT+TGG | 0.466304 | 3_2:-4501016 | None:intergenic |
| CCAATTCCTGCATTTGCTTG+AGG | 0.488555 | 3_2:-4501083 | None:intergenic |
| TGGAGGCAATGCCGTTGTAA+CGG | 0.522858 | 3_2:-4500996 | None:intergenic |
| GGGTGAGAATAACGCGTGCT+TGG | 0.527810 | 3_2:-4500975 | None:intergenic |
| ACGGCATTGCCTCCAATGAC+AGG | 0.539090 | 3_2:+4501004 | Msa0391720:CDS |
| TGCTATGTTGTACATGGCAG+AGG | 0.540527 | 3_2:+4501035 | Msa0391720:CDS |
| TGCCAATGCTATGTTGTACA+TGG | 0.550672 | 3_2:+4501029 | Msa0391720:CDS |
| TGGAGAATATACAATGTATG+TGG | 0.553534 | 3_2:+4500867 | Msa0391720:CDS |
| ACGCGTGCTTGGTCACGCCC+AGG | 0.556503 | 3_2:-4500964 | None:intergenic |
| ATTGGCAAACCTGTCATTGG+AGG | 0.565263 | 3_2:-4501013 | None:intergenic |
| TGCCATGTACAACATAGCAT+TGG | 0.582518 | 3_2:-4501031 | None:intergenic |
| GTTATTCTCACCCGTTACAA+CGG | 0.584831 | 3_2:+4500985 | Msa0391720:CDS |
| TGAGGTCCTCAAGCAAATGC+AGG | 0.587649 | 3_2:+4501077 | Msa0391720:CDS |
| GGTTGCTTCTAGCTGTGCTG+AGG | 0.620393 | 3_2:+4501059 | Msa0391720:CDS |
| CTTTCGCTACAACTACGCTC+AGG | 0.623193 | 3_2:-4500937 | None:intergenic |
| TATGTTGTACATGGCAGAGG+AGG | 0.691786 | 3_2:+4501038 | Msa0391720:CDS |
| GTTGTAGCGAAAGAGCACCT+GGG | 0.714138 | 3_2:+4500947 | Msa0391720:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CTAAATTATGTAAAAATAAA+CGG | - | chr3_2:4499390-4499409 | None:intergenic | 10.0% |
| !! | TTGTTATAAAAAACAATAAA+GGG | - | chr3_2:4500801-4500820 | None:intergenic | 10.0% |
| !! | AATAAAGAATAAAAATGAAA+GGG | - | chr3_2:4500824-4500843 | None:intergenic | 10.0% |
| !! | AAATAAAGAATAAAAATGAA+AGG | - | chr3_2:4500825-4500844 | None:intergenic | 10.0% |
| !! | CTAAATTATGTAAAAATAAA+CGG | - | chr3_2:4499390-4499409 | None:intergenic | 10.0% |
| !! | TTGTTATAAAAAACAATAAA+GGG | - | chr3_2:4500801-4500820 | None:intergenic | 10.0% |
| !! | AATAAAGAATAAAAATGAAA+GGG | - | chr3_2:4500824-4500843 | None:intergenic | 10.0% |
| !! | AAATAAAGAATAAAAATGAA+AGG | - | chr3_2:4500825-4500844 | None:intergenic | 10.0% |
| !! | AACAATAATAAAACCTAATT+TGG | - | chr3_2:4499005-4499024 | None:intergenic | 15.0% |
| !!! | TTATTGTTATTATTGTATCA+AGG | + | chr3_2:4499017-4499036 | Msa0391720:intron | 15.0% |
| !! | TTAATGCAGTTATTTATTTA+TGG | + | chr3_2:4500491-4500510 | Msa0391720:intron | 15.0% |
| !! | ATTTATTTATGGAAAAAGAT+TGG | + | chr3_2:4500502-4500521 | Msa0391720:intron | 15.0% |
| !! | GTTGTTATAAAAAACAATAA+AGG | - | chr3_2:4500802-4500821 | None:intergenic | 15.0% |
| !! | AACAATAATAAAACCTAATT+TGG | - | chr3_2:4499005-4499024 | None:intergenic | 15.0% |
| !!! | TTATTGTTATTATTGTATCA+AGG | + | chr3_2:4499017-4499036 | Msa0391720:intron | 15.0% |
| !! | TTAATGCAGTTATTTATTTA+TGG | + | chr3_2:4500491-4500510 | Msa0391720:intron | 15.0% |
| !! | ATTTATTTATGGAAAAAGAT+TGG | + | chr3_2:4500502-4500521 | Msa0391720:intron | 15.0% |
| !! | GTTGTTATAAAAAACAATAA+AGG | - | chr3_2:4500802-4500821 | None:intergenic | 15.0% |
| !!! | GTTTTTTAAAAGAGGATAAA+CGG | - | chr3_2:4498881-4498900 | None:intergenic | 20.0% |
| !! | TTATATAGGGATACTTTATA+CGG | - | chr3_2:4498956-4498975 | None:intergenic | 20.0% |
| !!! | AATGTTTCAGTATTGATAAA+CGG | + | chr3_2:4499675-4499694 | Msa0391720:intron | 20.0% |
| !! | TAATGAAAAAATCATATCCT+AGG | - | chr3_2:4499797-4499816 | None:intergenic | 20.0% |
| !! | TTATAAAAAACAATAAAGGG+TGG | - | chr3_2:4500798-4500817 | None:intergenic | 20.0% |
| !!! | GTTTTTTAAAAGAGGATAAA+CGG | - | chr3_2:4498881-4498900 | None:intergenic | 20.0% |
| !! | TTATATAGGGATACTTTATA+CGG | - | chr3_2:4498956-4498975 | None:intergenic | 20.0% |
| !!! | AATGTTTCAGTATTGATAAA+CGG | + | chr3_2:4499675-4499694 | Msa0391720:intron | 20.0% |
| !! | TAATGAAAAAATCATATCCT+AGG | - | chr3_2:4499797-4499816 | None:intergenic | 20.0% |
| !! | TTATAAAAAACAATAAAGGG+TGG | - | chr3_2:4500798-4500817 | None:intergenic | 20.0% |
| ! | TATATAGGGATACTTTATAC+GGG | - | chr3_2:4498955-4498974 | None:intergenic | 25.0% |
| !! | TAAAGTATCCCTATATAATC+AGG | + | chr3_2:4498958-4498977 | Msa0391720:intron | 25.0% |
| !! | AAAGTATCCCTATATAATCA+GGG | + | chr3_2:4498959-4498978 | Msa0391720:intron | 25.0% |
| !! | AATTTGGTTCCAAAGAAAAT+AGG | - | chr3_2:4498989-4499008 | None:intergenic | 25.0% |
| !!! | ATTTTCTTTGGAACCAAATT+AGG | + | chr3_2:4498989-4499008 | Msa0391720:intron | 25.0% |
| ! | TTTAGTTGCAGTGAAATTTA+TGG | + | chr3_2:4499405-4499424 | Msa0391720:intron | 25.0% |
| ! | GTTTATCAATACTGAAACAT+TGG | - | chr3_2:4499676-4499695 | None:intergenic | 25.0% |
| ! | AGAAGTTAGTGTTCATATTT+AGG | + | chr3_2:4499863-4499882 | Msa0391720:intron | 25.0% |
| ! | GAAGTTAGTGTTCATATTTA+GGG | + | chr3_2:4499864-4499883 | Msa0391720:intron | 25.0% |
| ! | CATGGATCATTGTTAATTAA+AGG | + | chr3_2:4500148-4500167 | Msa0391720:intron | 25.0% |
| !! | TAGTTTGTAGAAAATGGAAA+AGG | + | chr3_2:4500214-4500233 | Msa0391720:intron | 25.0% |
| ! | AGTTTGTAGAAAATGGAAAA+GGG | + | chr3_2:4500215-4500234 | Msa0391720:intron | 25.0% |
| ! | TAGGAATAGGAATAACTTTA+CGG | + | chr3_2:4500290-4500309 | Msa0391720:intron | 25.0% |
| ! | TGATTACGAAGAAAAATTGT+GGG | - | chr3_2:4500701-4500720 | None:intergenic | 25.0% |
| ! | TATATAGGGATACTTTATAC+GGG | - | chr3_2:4498955-4498974 | None:intergenic | 25.0% |
| !! | TAAAGTATCCCTATATAATC+AGG | + | chr3_2:4498958-4498977 | Msa0391720:intron | 25.0% |
| !! | AAAGTATCCCTATATAATCA+GGG | + | chr3_2:4498959-4498978 | Msa0391720:intron | 25.0% |
| !! | AATTTGGTTCCAAAGAAAAT+AGG | - | chr3_2:4498989-4499008 | None:intergenic | 25.0% |
| !!! | ATTTTCTTTGGAACCAAATT+AGG | + | chr3_2:4498989-4499008 | Msa0391720:intron | 25.0% |
| ! | TTTAGTTGCAGTGAAATTTA+TGG | + | chr3_2:4499405-4499424 | Msa0391720:intron | 25.0% |
| ! | GTTTATCAATACTGAAACAT+TGG | - | chr3_2:4499676-4499695 | None:intergenic | 25.0% |
| ! | AGAAGTTAGTGTTCATATTT+AGG | + | chr3_2:4499863-4499882 | Msa0391720:intron | 25.0% |
| ! | GAAGTTAGTGTTCATATTTA+GGG | + | chr3_2:4499864-4499883 | Msa0391720:intron | 25.0% |
| ! | CATGGATCATTGTTAATTAA+AGG | + | chr3_2:4500148-4500167 | Msa0391720:intron | 25.0% |
| !! | TAGTTTGTAGAAAATGGAAA+AGG | + | chr3_2:4500214-4500233 | Msa0391720:intron | 25.0% |
| ! | AGTTTGTAGAAAATGGAAAA+GGG | + | chr3_2:4500215-4500234 | Msa0391720:intron | 25.0% |
| ! | TAGGAATAGGAATAACTTTA+CGG | + | chr3_2:4500290-4500309 | Msa0391720:intron | 25.0% |
| ! | TGATTACGAAGAAAAATTGT+GGG | - | chr3_2:4500701-4500720 | None:intergenic | 25.0% |
| !!! | ATACGCACGTTTTTTAAAAG+AGG | - | chr3_2:4498889-4498908 | None:intergenic | 30.0% |
| AGGAAAACCCTGATTATATA+GGG | - | chr3_2:4498969-4498988 | None:intergenic | 30.0% | |
| TAGGAAAACCCTGATTATAT+AGG | - | chr3_2:4498970-4498989 | None:intergenic | 30.0% | |
| ATTTCTTCCACAAGTTTCAA+CGG | - | chr3_2:4499173-4499192 | None:intergenic | 30.0% | |
| CAATCAAATCGTAAGTGTAT+AGG | - | chr3_2:4499631-4499650 | None:intergenic | 30.0% | |
| AGCAGATATATTTAACCCTT+GGG | + | chr3_2:4499730-4499749 | Msa0391720:intron | 30.0% | |
| ! | TTTTTCCTAGATTTTCCCAA+GGG | - | chr3_2:4499748-4499767 | None:intergenic | 30.0% |
| GTTACTTACATATATAGCCT+AGG | + | chr3_2:4499777-4499796 | Msa0391720:intron | 30.0% | |
| !!! | TGATAGGTAACTTTTTTTCC+TGG | - | chr3_2:4499938-4499957 | None:intergenic | 30.0% |
| AAAGTTACCTATCATAGCTT+TGG | + | chr3_2:4499944-4499963 | Msa0391720:intron | 30.0% | |
| ATCATATCCAAAGCTATGAT+AGG | - | chr3_2:4499954-4499973 | None:intergenic | 30.0% | |
| TTTGATTACTGATGACTTCA+TGG | + | chr3_2:4500130-4500149 | Msa0391720:intron | 30.0% | |
| GATCATTGTTAATTAAAGGC+TGG | + | chr3_2:4500152-4500171 | Msa0391720:intron | 30.0% | |
| ! | TTGCACTAGTTTGTAGAAAA+TGG | + | chr3_2:4500208-4500227 | Msa0391720:intron | 30.0% |
| TACAACTAAAGACTTGCATA+TGG | + | chr3_2:4500248-4500267 | Msa0391720:intron | 30.0% | |
| ACAACTAAAGACTTGCATAT+GGG | + | chr3_2:4500249-4500268 | Msa0391720:intron | 30.0% | |
| TAAACCTATATATCCCCTAA+AGG | + | chr3_2:4500357-4500376 | Msa0391720:intron | 30.0% | |
| AGATTGAGAAAATAGCTCAA+GGG | - | chr3_2:4500470-4500489 | None:intergenic | 30.0% | |
| AACATGAGAAATTTGTGGTA+GGG | - | chr3_2:4500669-4500688 | None:intergenic | 30.0% | |
| GTGATTACGAAGAAAAATTG+TGG | - | chr3_2:4500702-4500721 | None:intergenic | 30.0% | |
| TAAAAAACAATAAAGGGTGG+TGG | - | chr3_2:4500795-4500814 | None:intergenic | 30.0% | |
| TGGAGAATATACAATGTATG+TGG | + | chr3_2:4500867-4500886 | Msa0391720:CDS | 30.0% | |
| ATATACAATGTATGTGGATC+AGG | + | chr3_2:4500873-4500892 | Msa0391720:CDS | 30.0% | |
| !!! | ATACGCACGTTTTTTAAAAG+AGG | - | chr3_2:4498889-4498908 | None:intergenic | 30.0% |
| AGGAAAACCCTGATTATATA+GGG | - | chr3_2:4498969-4498988 | None:intergenic | 30.0% | |
| TAGGAAAACCCTGATTATAT+AGG | - | chr3_2:4498970-4498989 | None:intergenic | 30.0% | |
| ATTTCTTCCACAAGTTTCAA+CGG | - | chr3_2:4499173-4499192 | None:intergenic | 30.0% | |
| CAATCAAATCGTAAGTGTAT+AGG | - | chr3_2:4499631-4499650 | None:intergenic | 30.0% | |
| AGCAGATATATTTAACCCTT+GGG | + | chr3_2:4499730-4499749 | Msa0391720:intron | 30.0% | |
| ! | TTTTTCCTAGATTTTCCCAA+GGG | - | chr3_2:4499748-4499767 | None:intergenic | 30.0% |
| GTTACTTACATATATAGCCT+AGG | + | chr3_2:4499777-4499796 | Msa0391720:intron | 30.0% | |
| !!! | TGATAGGTAACTTTTTTTCC+TGG | - | chr3_2:4499938-4499957 | None:intergenic | 30.0% |
| AAAGTTACCTATCATAGCTT+TGG | + | chr3_2:4499944-4499963 | Msa0391720:intron | 30.0% | |
| ATCATATCCAAAGCTATGAT+AGG | - | chr3_2:4499954-4499973 | None:intergenic | 30.0% | |
| TTTGATTACTGATGACTTCA+TGG | + | chr3_2:4500130-4500149 | Msa0391720:intron | 30.0% | |
| GATCATTGTTAATTAAAGGC+TGG | + | chr3_2:4500152-4500171 | Msa0391720:intron | 30.0% | |
| ! | TTGCACTAGTTTGTAGAAAA+TGG | + | chr3_2:4500208-4500227 | Msa0391720:intron | 30.0% |
| TACAACTAAAGACTTGCATA+TGG | + | chr3_2:4500248-4500267 | Msa0391720:intron | 30.0% | |
| ACAACTAAAGACTTGCATAT+GGG | + | chr3_2:4500249-4500268 | Msa0391720:intron | 30.0% | |
| TAAACCTATATATCCCCTAA+AGG | + | chr3_2:4500357-4500376 | Msa0391720:intron | 30.0% | |
| AGATTGAGAAAATAGCTCAA+GGG | - | chr3_2:4500470-4500489 | None:intergenic | 30.0% | |
| AACATGAGAAATTTGTGGTA+GGG | - | chr3_2:4500669-4500688 | None:intergenic | 30.0% | |
| GTGATTACGAAGAAAAATTG+TGG | - | chr3_2:4500702-4500721 | None:intergenic | 30.0% | |
| TAAAAAACAATAAAGGGTGG+TGG | - | chr3_2:4500795-4500814 | None:intergenic | 30.0% | |
| TGGAGAATATACAATGTATG+TGG | + | chr3_2:4500867-4500886 | Msa0391720:CDS | 30.0% | |
| ATATACAATGTATGTGGATC+AGG | + | chr3_2:4500873-4500892 | Msa0391720:CDS | 30.0% | |
| GATACTTTATACGGGATACA+CGG | - | chr3_2:4498947-4498966 | None:intergenic | 35.0% | |
| ! | CAGGGTTTTCCTATTTTCTT+TGG | + | chr3_2:4498977-4498996 | Msa0391720:intron | 35.0% |
| !! | AAGAGTTGGTAGTGATGTTA+GGG | - | chr3_2:4499150-4499169 | None:intergenic | 35.0% |
| TTTGTTCCCTTGACAATAGA+GGG | - | chr3_2:4499304-4499323 | None:intergenic | 35.0% | |
| ! | TTTTGTTCCCTTGACAATAG+AGG | - | chr3_2:4499305-4499324 | None:intergenic | 35.0% |
| CATGCTTCAGTGAAGTATAA+GGG | - | chr3_2:4499336-4499355 | None:intergenic | 35.0% | |
| AAATATATCTGCTCTTCCGA+TGG | - | chr3_2:4499723-4499742 | None:intergenic | 35.0% | |
| GAGCAGATATATTTAACCCT+TGG | + | chr3_2:4499729-4499748 | Msa0391720:intron | 35.0% | |
| TTTAACCCTTGGGAAAATCT+AGG | + | chr3_2:4499740-4499759 | Msa0391720:intron | 35.0% | |
| ! | CTTTTTCCTAGATTTTCCCA+AGG | - | chr3_2:4499749-4499768 | None:intergenic | 35.0% |
| ! | TAGAGTACTATTTGACCCTT+TGG | + | chr3_2:4499907-4499926 | Msa0391720:intron | 35.0% |
| ! | AGAGTACTATTTGACCCTTT+GGG | + | chr3_2:4499908-4499927 | Msa0391720:intron | 35.0% |
| ! | TTTTTCCTGGATTTCCCAAA+GGG | - | chr3_2:4499925-4499944 | None:intergenic | 35.0% |
| !!! | TTTTTTCCTGGATTTCCCAA+AGG | - | chr3_2:4499926-4499945 | None:intergenic | 35.0% |
| AAAACTTAGTGTCCATACGT+AGG | + | chr3_2:4500030-4500049 | Msa0391720:intron | 35.0% | |
| AAACTTAGTGTCCATACGTA+GGG | + | chr3_2:4500031-4500050 | Msa0391720:intron | 35.0% | |
| CATTGTTAATTAAAGGCTGG+TGG | + | chr3_2:4500155-4500174 | Msa0391720:intron | 35.0% | |
| !! | GGAGTTTTTGCTATAGGAAT+AGG | + | chr3_2:4500277-4500296 | Msa0391720:intron | 35.0% |
| TGAAGTCGTTCAAATGTGAA+TGG | - | chr3_2:4500319-4500338 | None:intergenic | 35.0% | |
| TTTGAATGCAGCATCCTTTA+GGG | - | chr3_2:4500374-4500393 | None:intergenic | 35.0% | |
| ! | TTTTGAATGCAGCATCCTTT+AGG | - | chr3_2:4500375-4500394 | None:intergenic | 35.0% |
| TTGACACCTATGACTTCTTT+AGG | - | chr3_2:4500422-4500441 | None:intergenic | 35.0% | |
| AGAAGTCATAGGTGTCAATT+TGG | + | chr3_2:4500424-4500443 | Msa0391720:intron | 35.0% | |
| ! | TCAATTTGGTGAACTAGCTA+GGG | + | chr3_2:4500438-4500457 | Msa0391720:intron | 35.0% |
| CAGATTGAGAAAATAGCTCA+AGG | - | chr3_2:4500471-4500490 | None:intergenic | 35.0% | |
| AAAATACCCATGCCACATAA+GGG | - | chr3_2:4500562-4500581 | None:intergenic | 35.0% | |
| AAAAATACCCATGCCACATA+AGG | - | chr3_2:4500563-4500582 | None:intergenic | 35.0% | |
| GAACATGAGAAATTTGTGGT+AGG | - | chr3_2:4500670-4500689 | None:intergenic | 35.0% | |
| GAAGGAACATGAGAAATTTG+TGG | - | chr3_2:4500674-4500693 | None:intergenic | 35.0% | |
| AGAAAAATTGTGGGTTTGGA+AGG | - | chr3_2:4500692-4500711 | None:intergenic | 35.0% | |
| ACGAAGAAAAATTGTGGGTT+TGG | - | chr3_2:4500696-4500715 | None:intergenic | 35.0% | |
| AAGTAGCTTGAAGTTGAAGA+GGG | - | chr3_2:4500739-4500758 | None:intergenic | 35.0% | |
| CTTCTTCTTCCTTTCAATTC+AGG | + | chr3_2:4500765-4500784 | Msa0391720:intron | 35.0% | |
| GATACTTTATACGGGATACA+CGG | - | chr3_2:4498947-4498966 | None:intergenic | 35.0% | |
| ! | CAGGGTTTTCCTATTTTCTT+TGG | + | chr3_2:4498977-4498996 | Msa0391720:intron | 35.0% |
| !! | AAGAGTTGGTAGTGATGTTA+GGG | - | chr3_2:4499150-4499169 | None:intergenic | 35.0% |
| TTTGTTCCCTTGACAATAGA+GGG | - | chr3_2:4499304-4499323 | None:intergenic | 35.0% | |
| ! | TTTTGTTCCCTTGACAATAG+AGG | - | chr3_2:4499305-4499324 | None:intergenic | 35.0% |
| CATGCTTCAGTGAAGTATAA+GGG | - | chr3_2:4499336-4499355 | None:intergenic | 35.0% | |
| AAATATATCTGCTCTTCCGA+TGG | - | chr3_2:4499723-4499742 | None:intergenic | 35.0% | |
| GAGCAGATATATTTAACCCT+TGG | + | chr3_2:4499729-4499748 | Msa0391720:intron | 35.0% | |
| TTTAACCCTTGGGAAAATCT+AGG | + | chr3_2:4499740-4499759 | Msa0391720:intron | 35.0% | |
| ! | CTTTTTCCTAGATTTTCCCA+AGG | - | chr3_2:4499749-4499768 | None:intergenic | 35.0% |
| ! | TAGAGTACTATTTGACCCTT+TGG | + | chr3_2:4499907-4499926 | Msa0391720:intron | 35.0% |
| ! | AGAGTACTATTTGACCCTTT+GGG | + | chr3_2:4499908-4499927 | Msa0391720:intron | 35.0% |
| ! | TTTTTCCTGGATTTCCCAAA+GGG | - | chr3_2:4499925-4499944 | None:intergenic | 35.0% |
| !!! | TTTTTTCCTGGATTTCCCAA+AGG | - | chr3_2:4499926-4499945 | None:intergenic | 35.0% |
| AAAACTTAGTGTCCATACGT+AGG | + | chr3_2:4500030-4500049 | Msa0391720:intron | 35.0% | |
| AAACTTAGTGTCCATACGTA+GGG | + | chr3_2:4500031-4500050 | Msa0391720:intron | 35.0% | |
| CATTGTTAATTAAAGGCTGG+TGG | + | chr3_2:4500155-4500174 | Msa0391720:intron | 35.0% | |
| !! | GGAGTTTTTGCTATAGGAAT+AGG | + | chr3_2:4500277-4500296 | Msa0391720:intron | 35.0% |
| TGAAGTCGTTCAAATGTGAA+TGG | - | chr3_2:4500319-4500338 | None:intergenic | 35.0% | |
| TTTGAATGCAGCATCCTTTA+GGG | - | chr3_2:4500374-4500393 | None:intergenic | 35.0% | |
| ! | TTTTGAATGCAGCATCCTTT+AGG | - | chr3_2:4500375-4500394 | None:intergenic | 35.0% |
| TTGACACCTATGACTTCTTT+AGG | - | chr3_2:4500422-4500441 | None:intergenic | 35.0% | |
| AGAAGTCATAGGTGTCAATT+TGG | + | chr3_2:4500424-4500443 | Msa0391720:intron | 35.0% | |
| ! | TCAATTTGGTGAACTAGCTA+GGG | + | chr3_2:4500438-4500457 | Msa0391720:intron | 35.0% |
| CAGATTGAGAAAATAGCTCA+AGG | - | chr3_2:4500471-4500490 | None:intergenic | 35.0% | |
| AAAATACCCATGCCACATAA+GGG | - | chr3_2:4500562-4500581 | None:intergenic | 35.0% | |
| AAAAATACCCATGCCACATA+AGG | - | chr3_2:4500563-4500582 | None:intergenic | 35.0% | |
| GAACATGAGAAATTTGTGGT+AGG | - | chr3_2:4500670-4500689 | None:intergenic | 35.0% | |
| GAAGGAACATGAGAAATTTG+TGG | - | chr3_2:4500674-4500693 | None:intergenic | 35.0% | |
| AGAAAAATTGTGGGTTTGGA+AGG | - | chr3_2:4500692-4500711 | None:intergenic | 35.0% | |
| ACGAAGAAAAATTGTGGGTT+TGG | - | chr3_2:4500696-4500715 | None:intergenic | 35.0% | |
| AAGTAGCTTGAAGTTGAAGA+GGG | - | chr3_2:4500739-4500758 | None:intergenic | 35.0% | |
| CTTCTTCTTCCTTTCAATTC+AGG | + | chr3_2:4500765-4500784 | Msa0391720:intron | 35.0% | |
| TGTCGATGAAACAGCAACAT+CGG | - | chr3_2:4499102-4499121 | None:intergenic | 40.0% | |
| !! | TGTTGCTGTTTCATCGACAA+AGG | + | chr3_2:4499103-4499122 | Msa0391720:intron | 40.0% |
| !! | TGATGTTAGGGTTTTGGTAG+TGG | - | chr3_2:4499138-4499157 | None:intergenic | 40.0% |
| !! | TGGTAGTGATGTTAGGGTTT+TGG | - | chr3_2:4499144-4499163 | None:intergenic | 40.0% |
| !! | GAAGAGTTGGTAGTGATGTT+AGG | - | chr3_2:4499151-4499170 | None:intergenic | 40.0% |
| ACAAGTTTCAACGGAAGAGT+TGG | - | chr3_2:4499164-4499183 | None:intergenic | 40.0% | |
| AACTCTTCCGTTGAAACTTG+TGG | + | chr3_2:4499163-4499182 | Msa0391720:intron | 40.0% | |
| ! | AAGTTGAAGGAGTTGGTTCA+CGG | - | chr3_2:4499210-4499229 | None:intergenic | 40.0% |
| CAACTCCTTCAACTTAAACG+CGG | + | chr3_2:4499215-4499234 | Msa0391720:intron | 40.0% | |
| TTGTCAAGGGAACAAAACTC+AGG | + | chr3_2:4499308-4499327 | Msa0391720:intron | 40.0% | |
| CCATGCTTCAGTGAAGTATA+AGG | - | chr3_2:4499337-4499356 | None:intergenic | 40.0% | |
| CCTTATACTTCACTGAAGCA+TGG | + | chr3_2:4499334-4499353 | Msa0391720:intron | 40.0% | |
| ! | CGCTATGTTAGTGAAGTGTT+CGG | + | chr3_2:4499360-4499379 | Msa0391720:intron | 40.0% |
| ! | TTGATAAACGGTTTGCTCTG+TGG | + | chr3_2:4499687-4499706 | Msa0391720:intron | 40.0% |
| ! | AGGGTACTTGTTCTTAGAAG+AGG | + | chr3_2:4499883-4499902 | Msa0391720:intron | 40.0% |
| GGGTACTTGTTCTTAGAAGA+GGG | + | chr3_2:4499884-4499903 | Msa0391720:intron | 40.0% | |
| AACTTAGTGTCCATACGTAG+GGG | + | chr3_2:4500032-4500051 | Msa0391720:intron | 40.0% | |
| ! | GCATCCTTTAGGGGATATAT+AGG | - | chr3_2:4500364-4500383 | None:intergenic | 40.0% |
| TTGAATGCAGCATCCTTTAG+GGG | - | chr3_2:4500373-4500392 | None:intergenic | 40.0% | |
| CTATGACTTCTTTAGGTGGA+GGG | - | chr3_2:4500415-4500434 | None:intergenic | 40.0% | |
| ACACCTATGACTTCTTTAGG+TGG | - | chr3_2:4500419-4500438 | None:intergenic | 40.0% | |
| ! | GTCAATTTGGTGAACTAGCT+AGG | + | chr3_2:4500437-4500456 | Msa0391720:intron | 40.0% |
| AAATACCCATGCCACATAAG+GGG | - | chr3_2:4500561-4500580 | None:intergenic | 40.0% | |
| GAGATCTAAGAGAGAGAAGA+GGG | - | chr3_2:4500614-4500633 | None:intergenic | 40.0% | |
| AGAGTGAGAGGAAGAAGAAA+GGG | - | chr3_2:4500636-4500655 | None:intergenic | 40.0% | |
| GAAGTAGCTTGAAGTTGAAG+AGG | - | chr3_2:4500740-4500759 | None:intergenic | 40.0% | |
| !! | TGATTTCTAGCTGATGCAAC+TGG | + | chr3_2:4500847-4500866 | Msa0391720:intron | 40.0% |
| GTTATTCTCACCCGTTACAA+CGG | + | chr3_2:4500985-4501004 | Msa0391720:CDS | 40.0% | |
| TGCCAATGCTATGTTGTACA+TGG | + | chr3_2:4501029-4501048 | Msa0391720:CDS | 40.0% | |
| TGCCATGTACAACATAGCAT+TGG | - | chr3_2:4501034-4501053 | None:intergenic | 40.0% | |
| TGTCGATGAAACAGCAACAT+CGG | - | chr3_2:4499102-4499121 | None:intergenic | 40.0% | |
| !! | TGTTGCTGTTTCATCGACAA+AGG | + | chr3_2:4499103-4499122 | Msa0391720:intron | 40.0% |
| !! | TGATGTTAGGGTTTTGGTAG+TGG | - | chr3_2:4499138-4499157 | None:intergenic | 40.0% |
| !! | TGGTAGTGATGTTAGGGTTT+TGG | - | chr3_2:4499144-4499163 | None:intergenic | 40.0% |
| !! | GAAGAGTTGGTAGTGATGTT+AGG | - | chr3_2:4499151-4499170 | None:intergenic | 40.0% |
| ACAAGTTTCAACGGAAGAGT+TGG | - | chr3_2:4499164-4499183 | None:intergenic | 40.0% | |
| AACTCTTCCGTTGAAACTTG+TGG | + | chr3_2:4499163-4499182 | Msa0391720:intron | 40.0% | |
| ! | AAGTTGAAGGAGTTGGTTCA+CGG | - | chr3_2:4499210-4499229 | None:intergenic | 40.0% |
| CAACTCCTTCAACTTAAACG+CGG | + | chr3_2:4499215-4499234 | Msa0391720:intron | 40.0% | |
| TTGTCAAGGGAACAAAACTC+AGG | + | chr3_2:4499308-4499327 | Msa0391720:intron | 40.0% | |
| CCATGCTTCAGTGAAGTATA+AGG | - | chr3_2:4499337-4499356 | None:intergenic | 40.0% | |
| CCTTATACTTCACTGAAGCA+TGG | + | chr3_2:4499334-4499353 | Msa0391720:intron | 40.0% | |
| ! | CGCTATGTTAGTGAAGTGTT+CGG | + | chr3_2:4499360-4499379 | Msa0391720:intron | 40.0% |
| ! | TTGATAAACGGTTTGCTCTG+TGG | + | chr3_2:4499687-4499706 | Msa0391720:intron | 40.0% |
| ! | AGGGTACTTGTTCTTAGAAG+AGG | + | chr3_2:4499883-4499902 | Msa0391720:intron | 40.0% |
| GGGTACTTGTTCTTAGAAGA+GGG | + | chr3_2:4499884-4499903 | Msa0391720:intron | 40.0% | |
| AACTTAGTGTCCATACGTAG+GGG | + | chr3_2:4500032-4500051 | Msa0391720:intron | 40.0% | |
| ! | GCATCCTTTAGGGGATATAT+AGG | - | chr3_2:4500364-4500383 | None:intergenic | 40.0% |
| TTGAATGCAGCATCCTTTAG+GGG | - | chr3_2:4500373-4500392 | None:intergenic | 40.0% | |
| CTATGACTTCTTTAGGTGGA+GGG | - | chr3_2:4500415-4500434 | None:intergenic | 40.0% | |
| ACACCTATGACTTCTTTAGG+TGG | - | chr3_2:4500419-4500438 | None:intergenic | 40.0% | |
| ! | GTCAATTTGGTGAACTAGCT+AGG | + | chr3_2:4500437-4500456 | Msa0391720:intron | 40.0% |
| AAATACCCATGCCACATAAG+GGG | - | chr3_2:4500561-4500580 | None:intergenic | 40.0% | |
| GAGATCTAAGAGAGAGAAGA+GGG | - | chr3_2:4500614-4500633 | None:intergenic | 40.0% | |
| AGAGTGAGAGGAAGAAGAAA+GGG | - | chr3_2:4500636-4500655 | None:intergenic | 40.0% | |
| GAAGTAGCTTGAAGTTGAAG+AGG | - | chr3_2:4500740-4500759 | None:intergenic | 40.0% | |
| !! | TGATTTCTAGCTGATGCAAC+TGG | + | chr3_2:4500847-4500866 | Msa0391720:intron | 40.0% |
| GTTATTCTCACCCGTTACAA+CGG | + | chr3_2:4500985-4501004 | Msa0391720:CDS | 40.0% | |
| TGCCAATGCTATGTTGTACA+TGG | + | chr3_2:4501029-4501048 | Msa0391720:CDS | 40.0% | |
| TGCCATGTACAACATAGCAT+TGG | - | chr3_2:4501034-4501053 | None:intergenic | 40.0% | |
| ACGGGATACACGGTTAACTT+GGG | - | chr3_2:4498937-4498956 | None:intergenic | 45.0% | |
| TACGGGATACACGGTTAACT+TGG | - | chr3_2:4498938-4498957 | None:intergenic | 45.0% | |
| ! | CGCTCTAAACATTCAGAACG+AGG | + | chr3_2:4499056-4499075 | Msa0391720:intron | 45.0% |
| ACATTCAGAACGAGGTAGCA+TGG | + | chr3_2:4499064-4499083 | Msa0391720:intron | 45.0% | |
| CATTCAGAACGAGGTAGCAT+GGG | + | chr3_2:4499065-4499084 | Msa0391720:intron | 45.0% | |
| !! | TGCTGTTTCATCGACAAAGG+AGG | + | chr3_2:4499106-4499125 | Msa0391720:intron | 45.0% |
| !!! | TGTTAGGGTTTTGGTAGTGG+TGG | - | chr3_2:4499135-4499154 | None:intergenic | 45.0% |
| ! | AGTTGAAGGAGTTGGTTCAC+GGG | - | chr3_2:4499209-4499228 | None:intergenic | 45.0% |
| !! | CGCGTTTAAGTTGAAGGAGT+TGG | - | chr3_2:4499217-4499236 | None:intergenic | 45.0% |
| !! | TGCATCCGCGTTTAAGTTGA+AGG | - | chr3_2:4499223-4499242 | None:intergenic | 45.0% |
| TTAAACGCGGATGCAAGTCA+TGG | + | chr3_2:4499228-4499247 | Msa0391720:intron | 45.0% | |
| GCAGTTGAGAATGTGCTTCT+TGG | - | chr3_2:4499282-4499301 | None:intergenic | 45.0% | |
| TCAACTGCCCTCTATTGTCA+AGG | + | chr3_2:4499294-4499313 | Msa0391720:intron | 45.0% | |
| CAACTGCCCTCTATTGTCAA+GGG | + | chr3_2:4499295-4499314 | Msa0391720:intron | 45.0% | |
| ! | ATAAACGGTTTGCTCTGTGG+TGG | + | chr3_2:4499690-4499709 | Msa0391720:intron | 45.0% |
| TATCTGCTCTTCCGATGGAA+GGG | - | chr3_2:4499718-4499737 | None:intergenic | 45.0% | |
| ATATCTGCTCTTCCGATGGA+AGG | - | chr3_2:4499719-4499738 | None:intergenic | 45.0% | |
| ! | TTTGACCCTTTGGGAAATCC+AGG | + | chr3_2:4499917-4499936 | Msa0391720:intron | 45.0% |
| AAAGACTTGCATATGGGAGC+AGG | + | chr3_2:4500255-4500274 | Msa0391720:intron | 45.0% | |
| AAGACTTGCATATGGGAGCA+GGG | + | chr3_2:4500256-4500275 | Msa0391720:intron | 45.0% | |
| !! | GAGCAGGGAGTTTTTGCTAT+AGG | + | chr3_2:4500271-4500290 | Msa0391720:intron | 45.0% |
| CCTATGACTTCTTTAGGTGG+AGG | - | chr3_2:4500416-4500435 | None:intergenic | 45.0% | |
| CCTCCACCTAAAGAAGTCAT+AGG | + | chr3_2:4500413-4500432 | Msa0391720:intron | 45.0% | |
| TGGAAGAGTGGTATGGAGAA+GGG | - | chr3_2:4500534-4500553 | None:intergenic | 45.0% | |
| ATGGAAGAGTGGTATGGAGA+AGG | - | chr3_2:4500535-4500554 | None:intergenic | 45.0% | |
| ! | ATAAGGGGTGTATGGAAGAG+TGG | - | chr3_2:4500546-4500565 | None:intergenic | 45.0% |
| TCTTCCATACACCCCTTATG+TGG | + | chr3_2:4500547-4500566 | Msa0391720:intron | 45.0% | |
| ATACACCCCTTATGTGGCAT+GGG | + | chr3_2:4500553-4500572 | Msa0391720:intron | 45.0% | |
| GGAGATCTAAGAGAGAGAAG+AGG | - | chr3_2:4500615-4500634 | None:intergenic | 45.0% | |
| CAGAGTGAGAGGAAGAAGAA+AGG | - | chr3_2:4500637-4500656 | None:intergenic | 45.0% | |
| AATTTGTGGTAGGGAGTGAG+AGG | - | chr3_2:4500660-4500679 | None:intergenic | 45.0% | |
| GGTGGTGTACCTGAATTGAA+AGG | - | chr3_2:4500777-4500796 | None:intergenic | 45.0% | |
| ATTGGCAAACCTGTCATTGG+AGG | - | chr3_2:4501016-4501035 | None:intergenic | 45.0% | |
| !! | AGCATTGGCAAACCTGTCAT+TGG | - | chr3_2:4501019-4501038 | None:intergenic | 45.0% |
| TGCTATGTTGTACATGGCAG+AGG | + | chr3_2:4501035-4501054 | Msa0391720:CDS | 45.0% | |
| TATGTTGTACATGGCAGAGG+AGG | + | chr3_2:4501038-4501057 | Msa0391720:CDS | 45.0% | |
| CCAATTCCTGCATTTGCTTG+AGG | - | chr3_2:4501086-4501105 | None:intergenic | 45.0% | |
| CCTCAAGCAAATGCAGGAAT+TGG | + | chr3_2:4501083-4501102 | Msa0391720:CDS | 45.0% | |
| ACGGGATACACGGTTAACTT+GGG | - | chr3_2:4498937-4498956 | None:intergenic | 45.0% | |
| TACGGGATACACGGTTAACT+TGG | - | chr3_2:4498938-4498957 | None:intergenic | 45.0% | |
| ! | CGCTCTAAACATTCAGAACG+AGG | + | chr3_2:4499056-4499075 | Msa0391720:intron | 45.0% |
| ACATTCAGAACGAGGTAGCA+TGG | + | chr3_2:4499064-4499083 | Msa0391720:intron | 45.0% | |
| CATTCAGAACGAGGTAGCAT+GGG | + | chr3_2:4499065-4499084 | Msa0391720:intron | 45.0% | |
| !! | TGCTGTTTCATCGACAAAGG+AGG | + | chr3_2:4499106-4499125 | Msa0391720:intron | 45.0% |
| !!! | TGTTAGGGTTTTGGTAGTGG+TGG | - | chr3_2:4499135-4499154 | None:intergenic | 45.0% |
| ! | AGTTGAAGGAGTTGGTTCAC+GGG | - | chr3_2:4499209-4499228 | None:intergenic | 45.0% |
| !! | CGCGTTTAAGTTGAAGGAGT+TGG | - | chr3_2:4499217-4499236 | None:intergenic | 45.0% |
| !! | TGCATCCGCGTTTAAGTTGA+AGG | - | chr3_2:4499223-4499242 | None:intergenic | 45.0% |
| TTAAACGCGGATGCAAGTCA+TGG | + | chr3_2:4499228-4499247 | Msa0391720:intron | 45.0% | |
| GCAGTTGAGAATGTGCTTCT+TGG | - | chr3_2:4499282-4499301 | None:intergenic | 45.0% | |
| TCAACTGCCCTCTATTGTCA+AGG | + | chr3_2:4499294-4499313 | Msa0391720:intron | 45.0% | |
| CAACTGCCCTCTATTGTCAA+GGG | + | chr3_2:4499295-4499314 | Msa0391720:intron | 45.0% | |
| ! | ATAAACGGTTTGCTCTGTGG+TGG | + | chr3_2:4499690-4499709 | Msa0391720:intron | 45.0% |
| TATCTGCTCTTCCGATGGAA+GGG | - | chr3_2:4499718-4499737 | None:intergenic | 45.0% | |
| ATATCTGCTCTTCCGATGGA+AGG | - | chr3_2:4499719-4499738 | None:intergenic | 45.0% | |
| ! | TTTGACCCTTTGGGAAATCC+AGG | + | chr3_2:4499917-4499936 | Msa0391720:intron | 45.0% |
| AAAGACTTGCATATGGGAGC+AGG | + | chr3_2:4500255-4500274 | Msa0391720:intron | 45.0% | |
| AAGACTTGCATATGGGAGCA+GGG | + | chr3_2:4500256-4500275 | Msa0391720:intron | 45.0% | |
| !! | GAGCAGGGAGTTTTTGCTAT+AGG | + | chr3_2:4500271-4500290 | Msa0391720:intron | 45.0% |
| CCTATGACTTCTTTAGGTGG+AGG | - | chr3_2:4500416-4500435 | None:intergenic | 45.0% | |
| CCTCCACCTAAAGAAGTCAT+AGG | + | chr3_2:4500413-4500432 | Msa0391720:intron | 45.0% | |
| TGGAAGAGTGGTATGGAGAA+GGG | - | chr3_2:4500534-4500553 | None:intergenic | 45.0% | |
| ATGGAAGAGTGGTATGGAGA+AGG | - | chr3_2:4500535-4500554 | None:intergenic | 45.0% | |
| ! | ATAAGGGGTGTATGGAAGAG+TGG | - | chr3_2:4500546-4500565 | None:intergenic | 45.0% |
| TCTTCCATACACCCCTTATG+TGG | + | chr3_2:4500547-4500566 | Msa0391720:intron | 45.0% | |
| ATACACCCCTTATGTGGCAT+GGG | + | chr3_2:4500553-4500572 | Msa0391720:intron | 45.0% | |
| GGAGATCTAAGAGAGAGAAG+AGG | - | chr3_2:4500615-4500634 | None:intergenic | 45.0% | |
| CAGAGTGAGAGGAAGAAGAA+AGG | - | chr3_2:4500637-4500656 | None:intergenic | 45.0% | |
| AATTTGTGGTAGGGAGTGAG+AGG | - | chr3_2:4500660-4500679 | None:intergenic | 45.0% | |
| GGTGGTGTACCTGAATTGAA+AGG | - | chr3_2:4500777-4500796 | None:intergenic | 45.0% | |
| ATTGGCAAACCTGTCATTGG+AGG | - | chr3_2:4501016-4501035 | None:intergenic | 45.0% | |
| !! | AGCATTGGCAAACCTGTCAT+TGG | - | chr3_2:4501019-4501038 | None:intergenic | 45.0% |
| TGCTATGTTGTACATGGCAG+AGG | + | chr3_2:4501035-4501054 | Msa0391720:CDS | 45.0% | |
| TATGTTGTACATGGCAGAGG+AGG | + | chr3_2:4501038-4501057 | Msa0391720:CDS | 45.0% | |
| CCAATTCCTGCATTTGCTTG+AGG | - | chr3_2:4501086-4501105 | None:intergenic | 45.0% | |
| CCTCAAGCAAATGCAGGAAT+TGG | + | chr3_2:4501083-4501102 | Msa0391720:CDS | 45.0% | |
| ! | CGGGATACACGGTTAACTTG+GGG | - | chr3_2:4498936-4498955 | None:intergenic | 50.0% |
| AAACAGCAACATCGGATCCC+CGG | - | chr3_2:4499094-4499113 | None:intergenic | 50.0% | |
| CATTGCATAGCCCCTACGTA+TGG | - | chr3_2:4500045-4500064 | None:intergenic | 50.0% | |
| TTAGGTGGAGGGTGAAGATG+AGG | - | chr3_2:4500404-4500423 | None:intergenic | 50.0% | |
| GGGTGTATGGAAGAGTGGTA+TGG | - | chr3_2:4500541-4500560 | None:intergenic | 50.0% | |
| ! | CATGCCACATAAGGGGTGTA+TGG | - | chr3_2:4500554-4500573 | None:intergenic | 50.0% |
| CATACACCCCTTATGTGGCA+TGG | + | chr3_2:4500552-4500571 | Msa0391720:intron | 50.0% | |
| GAAGAGGGCGAAGAAAGTTG+TGG | - | chr3_2:4500724-4500743 | None:intergenic | 50.0% | |
| CTTTCGCTACAACTACGCTC+AGG | - | chr3_2:4500940-4500959 | None:intergenic | 50.0% | |
| !! | AGTTGTAGCGAAAGAGCACC+TGG | + | chr3_2:4500946-4500965 | Msa0391720:CDS | 50.0% |
| !! | GTTGTAGCGAAAGAGCACCT+GGG | + | chr3_2:4500947-4500966 | Msa0391720:CDS | 50.0% |
| TGGAGGCAATGCCGTTGTAA+CGG | - | chr3_2:4500999-4501018 | None:intergenic | 50.0% | |
| TGAGGTCCTCAAGCAAATGC+AGG | + | chr3_2:4501077-4501096 | Msa0391720:CDS | 50.0% | |
| ! | CGGGATACACGGTTAACTTG+GGG | - | chr3_2:4498936-4498955 | None:intergenic | 50.0% |
| AAACAGCAACATCGGATCCC+CGG | - | chr3_2:4499094-4499113 | None:intergenic | 50.0% | |
| CATTGCATAGCCCCTACGTA+TGG | - | chr3_2:4500045-4500064 | None:intergenic | 50.0% | |
| TTAGGTGGAGGGTGAAGATG+AGG | - | chr3_2:4500404-4500423 | None:intergenic | 50.0% | |
| GGGTGTATGGAAGAGTGGTA+TGG | - | chr3_2:4500541-4500560 | None:intergenic | 50.0% | |
| ! | CATGCCACATAAGGGGTGTA+TGG | - | chr3_2:4500554-4500573 | None:intergenic | 50.0% |
| CATACACCCCTTATGTGGCA+TGG | + | chr3_2:4500552-4500571 | Msa0391720:intron | 50.0% | |
| GAAGAGGGCGAAGAAAGTTG+TGG | - | chr3_2:4500724-4500743 | None:intergenic | 50.0% | |
| CTTTCGCTACAACTACGCTC+AGG | - | chr3_2:4500940-4500959 | None:intergenic | 50.0% | |
| !! | AGTTGTAGCGAAAGAGCACC+TGG | + | chr3_2:4500946-4500965 | Msa0391720:CDS | 50.0% |
| !! | GTTGTAGCGAAAGAGCACCT+GGG | + | chr3_2:4500947-4500966 | Msa0391720:CDS | 50.0% |
| TGGAGGCAATGCCGTTGTAA+CGG | - | chr3_2:4500999-4501018 | None:intergenic | 50.0% | |
| TGAGGTCCTCAAGCAAATGC+AGG | + | chr3_2:4501077-4501096 | Msa0391720:CDS | 50.0% | |
| AACGAGGTAGCATGGGCAAC+CGG | + | chr3_2:4499072-4499091 | Msa0391720:intron | 55.0% | |
| GGTTCACGGGTAGTCTAAGC+AGG | - | chr3_2:4499196-4499215 | None:intergenic | 55.0% | |
| ! | CTGTGGTGGAACCCTTCCAT+CGG | + | chr3_2:4499704-4499723 | Msa0391720:intron | 55.0% |
| GGGTGAGAATAACGCGTGCT+TGG | - | chr3_2:4500978-4500997 | None:intergenic | 55.0% | |
| GGAGGCAATGCCGTTGTAAC+GGG | - | chr3_2:4500998-4501017 | None:intergenic | 55.0% | |
| ACGGCATTGCCTCCAATGAC+AGG | + | chr3_2:4501004-4501023 | Msa0391720:CDS | 55.0% | |
| ! | GGTTGCTTCTAGCTGTGCTG+AGG | + | chr3_2:4501059-4501078 | Msa0391720:CDS | 55.0% |
| AACGAGGTAGCATGGGCAAC+CGG | + | chr3_2:4499072-4499091 | Msa0391720:intron | 55.0% | |
| GGTTCACGGGTAGTCTAAGC+AGG | - | chr3_2:4499196-4499215 | None:intergenic | 55.0% | |
| ! | CTGTGGTGGAACCCTTCCAT+CGG | + | chr3_2:4499704-4499723 | Msa0391720:intron | 55.0% |
| GGGTGAGAATAACGCGTGCT+TGG | - | chr3_2:4500978-4500997 | None:intergenic | 55.0% | |
| GGAGGCAATGCCGTTGTAAC+GGG | - | chr3_2:4500998-4501017 | None:intergenic | 55.0% | |
| ACGGCATTGCCTCCAATGAC+AGG | + | chr3_2:4501004-4501023 | Msa0391720:CDS | 55.0% | |
| ! | GGTTGCTTCTAGCTGTGCTG+AGG | + | chr3_2:4501059-4501078 | Msa0391720:CDS | 55.0% |
| ACGAGGTAGCATGGGCAACC+GGG | + | chr3_2:4499073-4499092 | Msa0391720:intron | 60.0% | |
| GGAGTGAGAGGCAGAGTGAG+AGG | - | chr3_2:4500648-4500667 | None:intergenic | 60.0% | |
| ACGAGGTAGCATGGGCAACC+GGG | + | chr3_2:4499073-4499092 | Msa0391720:intron | 60.0% | |
| GGAGTGAGAGGCAGAGTGAG+AGG | - | chr3_2:4500648-4500667 | None:intergenic | 60.0% | |
| CGAGGTAGCATGGGCAACCG+GGG | + | chr3_2:4499074-4499093 | Msa0391720:intron | 65.0% | |
| CGAGGTAGCATGGGCAACCG+GGG | + | chr3_2:4499074-4499093 | Msa0391720:intron | 65.0% | |
| ACGCGTGCTTGGTCACGCCC+AGG | - | chr3_2:4500967-4500986 | None:intergenic | 70.0% | |
| ACGCGTGCTTGGTCACGCCC+AGG | - | chr3_2:4500967-4500986 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 4498850 | 4501119 | 4498850 | ID=Msa0391720;Name=Msa0391720 |
| chr3_2 | mRNA | 4498850 | 4501119 | 4498850 | ID=Msa0391720-mRNA-1;Parent=Msa0391720;Name=Msa0391720-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0|0|0|0.5|1|1|2|0|88 |
| chr3_2 | exon | 4498850 | 4498853 | 4498850 | ID=Msa0391720-mRNA-1:exon:1072;Parent=Msa0391720-mRNA-1 |
| chr3_2 | exon | 4500857 | 4501119 | 4500857 | ID=Msa0391720-mRNA-1:exon:1073;Parent=Msa0391720-mRNA-1 |
| chr3_2 | CDS | 4498850 | 4498853 | 4498850 | ID=Msa0391720-mRNA-1:cds;Parent=Msa0391720-mRNA-1 |
| chr3_2 | CDS | 4500857 | 4501119 | 4500857 | ID=Msa0391720-mRNA-1:cds;Parent=Msa0391720-mRNA-1 |
| Gene Sequence |
| Protein sequence |
