Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0346690 | XP_003598058.2 | 87.943 | 705 | 37 | 6 | 1 | 661 | 1 | 701 | 0.0 | 1221 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0346690 | sp|Q9FQ19|SCC13_ARATH | 35.903 | 493 | 234 | 15 | 1 | 454 | 1 | 450 | 4.37e-66 | 233 |
| Msa0346690 | sp|Q9FQ19|SCC13_ARATH | 70.588 | 51 | 15 | 0 | 606 | 656 | 637 | 687 | 2.42e-14 | 80.1 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0346690 | G7J066 | 87.943 | 705 | 37 | 6 | 1 | 661 | 1 | 701 | 0.0 | 1221 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0204970 | Msa0346690 | 0.810132 | 1.341981e-50 | -8.615850e-47 |
| Msa0249870 | Msa0346690 | 0.804411 | 2.188140e-49 | -8.615850e-47 |
| Msa0346690 | Msa0392570 | 0.809457 | 1.874270e-50 | -8.615850e-47 |
| Msa0346690 | Msa0434360 | 0.807989 | 3.860892e-50 | -8.615850e-47 |
| Msa0346690 | Msa0470150 | 0.809550 | 1.789893e-50 | -8.615850e-47 |
| Msa0346690 | Msa0544410 | 0.809754 | 1.618291e-50 | -8.615850e-47 |
| Msa0346690 | Msa0663290 | 0.812974 | 3.235882e-51 | -8.615850e-47 |
| Msa0346690 | Msa0664070 | 0.803000 | 4.294403e-49 | -8.615850e-47 |
| Msa0346690 | Msa0982960 | 0.809810 | 1.574379e-50 | -8.615850e-47 |
| Msa0346690 | Msa1073060 | 0.800793 | 1.220211e-48 | -8.615850e-47 |
| Msa0346690 | Msa1128620 | 0.803578 | 3.259996e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0346690 | MtrunA17_Chr3g0077681 | 87.943 | 705 | 37 | 6 | 1 | 661 | 1 | 701 | 0.0 | 1221 |
| Msa0346690 | MtrunA17_Chr7g0249681 | 49.080 | 163 | 81 | 2 | 1 | 162 | 1 | 162 | 1.17e-37 | 150 |
| Msa0346690 | MtrunA17_Chr7g0226281 | 38.732 | 142 | 76 | 4 | 9 | 146 | 4 | 138 | 1.92e-18 | 89.7 |
| Msa0346690 | MtrunA17_Chr3g0087321 | 46.512 | 86 | 43 | 1 | 43 | 125 | 14 | 99 | 1.06e-17 | 79.0 |
| Msa0346690 | MtrunA17_Chr5g0437491 | 33.913 | 115 | 73 | 1 | 1 | 112 | 1 | 115 | 4.09e-17 | 81.3 |
| Msa0346690 | MtrunA17_Chr5g0436101 | 33.621 | 116 | 74 | 1 | 1 | 113 | 1 | 116 | 1.95e-16 | 79.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0346690 | AT3G59550.1 | 35.903 | 493 | 234 | 15 | 1 | 454 | 1 | 450 | 4.44e-67 | 233 |
| Msa0346690 | AT3G59550.1 | 70.588 | 51 | 15 | 0 | 606 | 656 | 637 | 687 | 2.46e-15 | 80.1 |
| Msa0346690 | AT5G16270.1 | 49.080 | 163 | 81 | 2 | 1 | 162 | 1 | 162 | 1.91e-38 | 153 |
| Msa0346690 | AT5G40840.4 | 40.237 | 169 | 87 | 5 | 1 | 161 | 1 | 163 | 8.05e-27 | 116 |
| Msa0346690 | AT5G40840.2 | 40.237 | 169 | 87 | 5 | 1 | 161 | 1 | 163 | 1.52e-26 | 115 |
| Msa0346690 | AT5G40840.1 | 40.237 | 169 | 87 | 5 | 1 | 161 | 1 | 163 | 1.61e-26 | 115 |
| Msa0346690 | AT5G05490.2 | 33.884 | 121 | 77 | 1 | 1 | 118 | 1 | 121 | 7.87e-16 | 81.6 |
| Msa0346690 | AT5G05490.1 | 32.759 | 116 | 75 | 1 | 6 | 118 | 16 | 131 | 1.56e-13 | 74.3 |
Find 201 sgRNAs with CRISPR-Local
Find 375 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACCTCTAATTTACTCTTTA+AGG | 0.039969 | 3_1:-7333372 | None:intergenic |
| TCTAATAATTTCAGAGAAAT+TGG | 0.117401 | 3_1:-7328041 | None:intergenic |
| ATCTCCGGTGCATCTGTTAT+TGG | 0.224978 | 3_1:-7331659 | None:intergenic |
| GGCTCATCAACAACGATTTC+AGG | 0.226741 | 3_1:-7331638 | None:intergenic |
| TAGGATGTTCTTTGAAGTTT+TGG | 0.239810 | 3_1:+7332939 | Msa0346690:CDS |
| ATTTCAGGTGCATCAGTTAT+TGG | 0.240679 | 3_1:-7331623 | None:intergenic |
| CTAAGAGATGGTTCAGAAAT+TGG | 0.243750 | 3_1:-7330926 | None:intergenic |
| ATTTCAGGTGCATCAGTTAT+TGG | 0.256541 | 3_1:-7331587 | None:intergenic |
| ACTGAAGAGCAAAAGGTTTA+AGG | 0.266284 | 3_1:+7331324 | Msa0346690:CDS |
| CCTGTCCTTGCTCCATTTGA+TGG | 0.272790 | 3_1:-7331012 | None:intergenic |
| TGGTAGTATGTGACTCTATA+TGG | 0.278279 | 3_1:-7330557 | None:intergenic |
| GGCTCGTCAACAGCAATTTC+AGG | 0.282832 | 3_1:-7331602 | None:intergenic |
| CTGGGGTTCCCATTGCATTA+AGG | 0.284115 | 3_1:+7329686 | Msa0346690:CDS |
| TTTGACCAGCCTTTATTTAC+AGG | 0.284947 | 3_1:+7331355 | Msa0346690:CDS |
| TACCTTAAAGAGTAAATTAG+AGG | 0.300467 | 3_1:+7333370 | Msa0346690:three_prime_UTR |
| CCCTGTCCTTGCTCCATTTG+AGG | 0.309397 | 3_1:-7331043 | None:intergenic |
| TTTGGTCTTGCATCAGAATC+TGG | 0.310278 | 3_1:-7330372 | None:intergenic |
| TCGTCAGCAACTTGATTAAT+TGG | 0.312082 | 3_1:-7331563 | None:intergenic |
| TGGATCTCAGGAATCATTTC+AGG | 0.317785 | 3_1:-7330738 | None:intergenic |
| TAGCCATCATCATATCTTTC+AGG | 0.318226 | 3_1:+7330596 | Msa0346690:CDS |
| TTACCTATTTGGTAACACTA+TGG | 0.321043 | 3_1:-7331125 | None:intergenic |
| GTAAAATACACATTTCTAAA+GGG | 0.327633 | 3_1:-7333350 | None:intergenic |
| GTCGCAACACCTCCTTTATT+AGG | 0.328789 | 3_1:-7331776 | None:intergenic |
| ACATAATTATCCACTATAAT+AGG | 0.329035 | 3_1:-7330198 | None:intergenic |
| CAAGATGAGATTACTCTTGC+AGG | 0.335666 | 3_1:+7330080 | Msa0346690:CDS |
| CTAATAATTTCAGAGAAATT+GGG | 0.338855 | 3_1:-7328040 | None:intergenic |
| TTTCTCTTCCTTACTCTTTG+AGG | 0.341054 | 3_1:-7331085 | None:intergenic |
| TACCCTTGTCGGTGGAGATT+GGG | 0.342711 | 3_1:-7330505 | None:intergenic |
| CTCTGTCCCTGCTCCATTTG+AGG | 0.349871 | 3_1:-7330983 | None:intergenic |
| TTTCAGCTTGAACAAGATCT+TGG | 0.350159 | 3_1:+7332891 | Msa0346690:CDS |
| GCGAAAGGACGTCACTGCTT+TGG | 0.352534 | 3_1:+7331291 | Msa0346690:CDS |
| GCAAGGACAGGGTCAGGATC+AGG | 0.353115 | 3_1:+7331054 | Msa0346690:CDS |
| CGAAAGGACGTCACTGCTTT+GGG | 0.353338 | 3_1:+7331292 | Msa0346690:CDS |
| AAAGCTTACTCTTCCTCATT+TGG | 0.357256 | 3_1:-7330390 | None:intergenic |
| TGAAAATATTCCAACAGATA+TGG | 0.360614 | 3_1:+7330680 | Msa0346690:CDS |
| CAATTTCTGAACCATCTCTT+AGG | 0.361011 | 3_1:+7330927 | Msa0346690:CDS |
| GTATGTTGCGAGTATCATTA+AGG | 0.366211 | 3_1:-7331261 | None:intergenic |
| GTTTCTTTCAGAGCATATAA+TGG | 0.371261 | 3_1:+7329660 | Msa0346690:intron |
| CGAGCTCATGCATCAGAAAC+TGG | 0.372324 | 3_1:+7331851 | Msa0346690:CDS |
| TAGTCCCTGATGTAAATTAG+AGG | 0.375577 | 3_1:+7333322 | Msa0346690:three_prime_UTR |
| ACCCCATAGTGTTACCAAAT+AGG | 0.380002 | 3_1:+7331122 | Msa0346690:CDS |
| CTACCCTTGTCGGTGGAGAT+TGG | 0.384833 | 3_1:-7330506 | None:intergenic |
| ATGTCGGCTCACCTACTCTT+AGG | 0.390118 | 3_1:+7329709 | Msa0346690:CDS |
| ATTTACATCAGGGACTAAAC+TGG | 0.396765 | 3_1:-7333316 | None:intergenic |
| CCTGTCCTTGCTCCATTTGA+GGG | 0.398772 | 3_1:-7331042 | None:intergenic |
| AATCAATTTATCAGTTCTGC+TGG | 0.398938 | 3_1:+7331929 | Msa0346690:CDS |
| GAACAGCTACCTGTAAATAA+AGG | 0.399524 | 3_1:-7331364 | None:intergenic |
| GAGGGATCGCGAAGAGCTTC+CGG | 0.400091 | 3_1:-7330645 | None:intergenic |
| TCAGTGTCTTTGCTTTGAGT+TGG | 0.403840 | 3_1:-7331725 | None:intergenic |
| GGTAAAATACACATTTCTAA+AGG | 0.410067 | 3_1:-7333351 | None:intergenic |
| AGATAATCCCAAGTGCTTAC+AGG | 0.417460 | 3_1:+7331750 | Msa0346690:CDS |
| AAACTTGAGGAGAAATCATA+AGG | 0.420722 | 3_1:-7333469 | None:intergenic |
| GGTCTAGCTGGTTGAGTTGG+AGG | 0.424330 | 3_1:-7330771 | None:intergenic |
| CCTTGCTCCATTTGAGGGAC+AGG | 0.424926 | 3_1:-7331037 | None:intergenic |
| TTGTTATATTGCAGGACCTC+TGG | 0.425634 | 3_1:+7332331 | Msa0346690:intron |
| GTCTAGCTGGTTGAGTTGGA+GGG | 0.427173 | 3_1:-7330770 | None:intergenic |
| GTTAACCTCTAATTTACATC+AGG | 0.427592 | 3_1:-7333327 | None:intergenic |
| GGGGTTTCAGCATGGATCTC+AGG | 0.428761 | 3_1:-7330750 | None:intergenic |
| CAGTGTCTTTGCTTTGAGTT+GGG | 0.431920 | 3_1:-7331724 | None:intergenic |
| GGCTATGAAATAGATATTAA+CGG | 0.439404 | 3_1:+7329913 | Msa0346690:CDS |
| TACCTATTTGGTAACACTAT+GGG | 0.440577 | 3_1:-7331124 | None:intergenic |
| TCTGTCCCTGCTCCATTTGA+GGG | 0.440810 | 3_1:-7330982 | None:intergenic |
| AATTGGTTGTCTTAGGTATG+AGG | 0.444436 | 3_1:+7330040 | Msa0346690:intron |
| TGAGAAGCATCTGGAGTTAG+TGG | 0.447149 | 3_1:-7330792 | None:intergenic |
| TCTCATGGTGGCGCCTCAGA+TGG | 0.456879 | 3_1:+7330810 | Msa0346690:CDS |
| ACAGGGTCCTGTCCCTCAAA+TGG | 0.459699 | 3_1:+7331030 | Msa0346690:CDS |
| ACGTCACTGCTTTGGGCGCA+TGG | 0.461948 | 3_1:+7331299 | Msa0346690:CDS |
| GACCTTGATGCGCTTAACTT+AGG | 0.464421 | 3_1:+7329892 | Msa0346690:CDS |
| TCCTACCCCTCAAATGGAGC+AGG | 0.465260 | 3_1:+7330976 | Msa0346690:CDS |
| CTGTCCTTGCTCCATTTGAT+GGG | 0.465308 | 3_1:-7331011 | None:intergenic |
| CCCTCAAATGGAGCAAGGAC+AGG | 0.467624 | 3_1:+7331042 | Msa0346690:CDS |
| TCAGAGCATATAATGGATCC+TGG | 0.468440 | 3_1:+7329667 | Msa0346690:intron |
| AAGGACCACTCTCAACGGTT+TGG | 0.474786 | 3_1:+7328140 | Msa0346690:CDS |
| GCTTACAGGAGTCCTAATAA+AGG | 0.475665 | 3_1:+7331764 | Msa0346690:CDS |
| AGGTGTTGCGACTCCTACTT+CGG | 0.476216 | 3_1:+7331787 | Msa0346690:CDS |
| GTACAACAAGAGGAGCCTTA+TGG | 0.477197 | 3_1:+7333224 | Msa0346690:CDS |
| TTCAAGCTGAAATCTTCAGC+AGG | 0.477953 | 3_1:-7332880 | None:intergenic |
| GCGCCACCATGAGAAGCATC+TGG | 0.477979 | 3_1:-7330801 | None:intergenic |
| CTTTGAGTTGGGATAGTGGC+AGG | 0.478045 | 3_1:-7331713 | None:intergenic |
| GCTATGAAATAGATATTAAC+GGG | 0.482884 | 3_1:+7329914 | Msa0346690:CDS |
| ATCTCCACCGACAAGGGTAG+TGG | 0.483754 | 3_1:+7330509 | Msa0346690:CDS |
| TTTGCTTTGAGTTGGGATAG+TGG | 0.485270 | 3_1:-7331717 | None:intergenic |
| TATGTTGCGAGTATCATTAA+GGG | 0.488049 | 3_1:-7331260 | None:intergenic |
| GGTGCTTGCCTCGCATCCTC+AGG | 0.489055 | 3_1:-7329838 | None:intergenic |
| ACAGAGTTCTACCCATCAAA+TGG | 0.492093 | 3_1:+7331000 | Msa0346690:CDS |
| AATGGAGCAAGGACAGGGTC+AGG | 0.495980 | 3_1:+7331048 | Msa0346690:CDS |
| GTGAGAGGCCTCAAAGAGTA+AGG | 0.496584 | 3_1:+7331077 | Msa0346690:CDS |
| CCATCAAATGGAGCAAGGAC+AGG | 0.497665 | 3_1:+7331012 | Msa0346690:CDS |
| GCCTCAGATGGACAAGTTCA+TGG | 0.497833 | 3_1:+7330822 | Msa0346690:CDS |
| GAGACAATGCGTTCAATCTC+CGG | 0.498235 | 3_1:-7331674 | None:intergenic |
| GCCGACATCCTTAATGCAAT+GGG | 0.499582 | 3_1:-7329694 | None:intergenic |
| AGTGGTCTAGCTGGTTGAGT+TGG | 0.500584 | 3_1:-7330774 | None:intergenic |
| GACTCCTACTTCGGTTTCTG+AGG | 0.501640 | 3_1:+7331796 | Msa0346690:CDS |
| AGCTTGAACAAGATCTTGGA+TGG | 0.504519 | 3_1:+7332895 | Msa0346690:CDS |
| ATGTTATCATGATATGTGCT+AGG | 0.504604 | 3_1:-7331878 | None:intergenic |
| GAGTTGGAGGGGTTTCAGCA+TGG | 0.508926 | 3_1:-7330758 | None:intergenic |
| CGAGGTGATGTTGCACCGTA+TGG | 0.509861 | 3_1:-7331830 | None:intergenic |
| GGTGGCGGTTGTGCATTTGA+AGG | 0.510426 | 3_1:-7330351 | None:intergenic |
| CCCTGCTCCATTTGAGGGGT+AGG | 0.511548 | 3_1:-7330977 | None:intergenic |
| CAAGATTGCAGTCGTTAAGA+AGG | 0.511577 | 3_1:-7329765 | None:intergenic |
| CATCTCCGAGGAAGATCATC+CGG | 0.513601 | 3_1:+7331520 | Msa0346690:CDS |
| CGGTTGTGCATTTGAAGGAC+TGG | 0.515647 | 3_1:-7330346 | None:intergenic |
| TGAACATCCACTACCCTTGT+CGG | 0.515801 | 3_1:-7330516 | None:intergenic |
| GGAGTAATAGTAGTATTATC+CGG | 0.515972 | 3_1:-7331539 | None:intergenic |
| TACTTCGGTTTCTGAGGGAA+TGG | 0.516748 | 3_1:+7331802 | Msa0346690:CDS |
| AACTTATAAACATACAAAGA+AGG | 0.517826 | 3_1:+7331468 | Msa0346690:CDS |
| GGTAGTATGTGACTCTATAT+GGG | 0.520004 | 3_1:-7330556 | None:intergenic |
| TTGAAGCTAATATCACCATA+AGG | 0.520542 | 3_1:-7333239 | None:intergenic |
| TCTAGCTGGTTGAGTTGGAG+GGG | 0.520581 | 3_1:-7330769 | None:intergenic |
| TTCTGATGCAAGACCAAATG+AGG | 0.521224 | 3_1:+7330377 | Msa0346690:CDS |
| TATTATAGTGGATAATTATG+TGG | 0.525323 | 3_1:+7330200 | Msa0346690:CDS |
| GATGCTTCCTACCCCTCAAA+TGG | 0.526984 | 3_1:+7330970 | Msa0346690:CDS |
| AGCTACCTGTAAATAAAGGC+TGG | 0.529463 | 3_1:-7331360 | None:intergenic |
| CATGGGAACTGAAGAGCAAA+AGG | 0.532189 | 3_1:+7331317 | Msa0346690:CDS |
| AGCCGACATCCTTAATGCAA+TGG | 0.534742 | 3_1:-7329695 | None:intergenic |
| TCCCATTGCATTAAGGATGT+CGG | 0.538243 | 3_1:+7329693 | Msa0346690:CDS |
| TCTGGAGTTAGTGGTCTAGC+TGG | 0.538631 | 3_1:-7330783 | None:intergenic |
| TTAGGACTCCTGTAAGCACT+TGG | 0.539155 | 3_1:-7331758 | None:intergenic |
| TCAGCAACTTGATTAATTGG+AGG | 0.542703 | 3_1:-7331560 | None:intergenic |
| TTGTCGATATCCATATCTGT+TGG | 0.543539 | 3_1:-7330690 | None:intergenic |
| TAATAATTTCAGAGAAATTG+GGG | 0.545663 | 3_1:-7328039 | None:intergenic |
| ACCCTTGTCGGTGGAGATTG+GGG | 0.545746 | 3_1:-7330504 | None:intergenic |
| CAGAGCATATAATGGATCCT+GGG | 0.547443 | 3_1:+7329668 | Msa0346690:intron |
| TGTGACTCTATATGGGAACT+TGG | 0.549330 | 3_1:-7330549 | None:intergenic |
| AAGGTCAAAAGTGGCTGGCA+TGG | 0.550608 | 3_1:-7329875 | None:intergenic |
| CAAGGACAGGGTCAGGATCA+GGG | 0.553698 | 3_1:+7331055 | Msa0346690:CDS |
| GCATCAAGGTCAAAAGTGGC+TGG | 0.555614 | 3_1:-7329880 | None:intergenic |
| CTTAATGCAATGGGAACCCC+AGG | 0.556697 | 3_1:-7329685 | None:intergenic |
| CGTCACTGCTTTGGGCGCAT+GGG | 0.557386 | 3_1:+7331300 | Msa0346690:CDS |
| AGGGTCAGGATCAGGGTGAG+AGG | 0.558925 | 3_1:+7331062 | Msa0346690:CDS |
| TAAAATACACATTTCTAAAG+GGG | 0.568883 | 3_1:-7333349 | None:intergenic |
| TTCCCCAATCTCCACCGACA+AGG | 0.572496 | 3_1:+7330502 | Msa0346690:CDS |
| TGAGGATGCGAGGCAAGCAC+CGG | 0.574961 | 3_1:+7329840 | Msa0346690:CDS |
| AAAATAGAACATACTGGCTG+TGG | 0.576112 | 3_1:-7332379 | None:intergenic |
| CATCAAATGGAGCAAGGACA+GGG | 0.576993 | 3_1:+7331013 | Msa0346690:CDS |
| GCTATCGTCACTATTATGAC+TGG | 0.577246 | 3_1:-7330577 | None:intergenic |
| AAGCGCATCAAGGTCAAAAG+TGG | 0.581334 | 3_1:-7329884 | None:intergenic |
| AATAATGCTATCAAAACTTG+AGG | 0.585089 | 3_1:-7333482 | None:intergenic |
| TCCATGAACTTGTCCATCTG+AGG | 0.585386 | 3_1:-7330823 | None:intergenic |
| ACTCCTACTTCGGTTTCTGA+GGG | 0.585793 | 3_1:+7331797 | Msa0346690:CDS |
| TGTTATCATGATATGTGCTA+GGG | 0.586588 | 3_1:-7331877 | None:intergenic |
| GATCCTGAAAGATATGATGA+TGG | 0.587656 | 3_1:-7330599 | None:intergenic |
| TAGGACTCCTGTAAGCACTT+GGG | 0.589038 | 3_1:-7331757 | None:intergenic |
| AAACTAGAAAGATTGCTGCT+AGG | 0.590045 | 3_1:+7332920 | Msa0346690:CDS |
| ACCTATTTGGTAACACTATG+GGG | 0.591558 | 3_1:-7331123 | None:intergenic |
| TCCCCAATCTCCACCGACAA+GGG | 0.591628 | 3_1:+7330503 | Msa0346690:CDS |
| ACTTATAAACATACAAAGAA+GGG | 0.591939 | 3_1:+7331469 | Msa0346690:CDS |
| TAGAACATACTGGCTGTGGC+TGG | 0.594523 | 3_1:-7332375 | None:intergenic |
| AGCCTAAGTTAAGCGCATCA+AGG | 0.594597 | 3_1:-7329894 | None:intergenic |
| GATTAGTATCTGAAAAGTCA+TGG | 0.596164 | 3_1:-7331910 | None:intergenic |
| AAAGAACAACTCCTAAGAGA+TGG | 0.596677 | 3_1:-7330938 | None:intergenic |
| ATTCCCTCAGAAACCGAAGT+AGG | 0.596700 | 3_1:-7331800 | None:intergenic |
| CCTCAAATGGAGCAAGGACA+GGG | 0.597645 | 3_1:+7331043 | Msa0346690:CDS |
| TGAGCCAATAACAGATGCAC+CGG | 0.598552 | 3_1:+7331655 | Msa0346690:CDS |
| GGGTACTTACGAACAGTGGA+GGG | 0.600864 | 3_1:-7328220 | None:intergenic |
| TCTTATTGATGTACAACAAG+AGG | 0.600944 | 3_1:+7333214 | Msa0346690:CDS |
| TATATGTTCAAAACCTCACT+TGG | 0.605236 | 3_1:+7331496 | Msa0346690:CDS |
| CTGTCCCTGCTCCATTTGAG+GGG | 0.606362 | 3_1:-7330981 | None:intergenic |
| ATTATCCGGATGATCTTCCT+CGG | 0.614080 | 3_1:-7331525 | None:intergenic |
| GTTTCTGATGCATGAGCTCG+AGG | 0.615602 | 3_1:-7331848 | None:intergenic |
| AGATCGAAGTCCTATTATAG+TGG | 0.617554 | 3_1:+7330188 | Msa0346690:intron |
| CTAACTCCAGATGCTTCTCA+TGG | 0.617946 | 3_1:+7330795 | Msa0346690:CDS |
| GGCATGGTAATAGAATGAAC+CGG | 0.619797 | 3_1:-7329859 | None:intergenic |
| GCGATCCAAACCGTTGAGAG+TGG | 0.624581 | 3_1:-7328145 | None:intergenic |
| CAACATACGACGGAAGCGAA+AGG | 0.625798 | 3_1:+7331276 | Msa0346690:CDS |
| AGGGTAGTGGATGTTCAAGA+TGG | 0.628123 | 3_1:+7330522 | Msa0346690:CDS |
| GCGAAAAGGACCACTCTCAA+CGG | 0.628985 | 3_1:+7328135 | Msa0346690:CDS |
| TACAAAACAGACATTGCCAC+CGG | 0.629206 | 3_1:+7330626 | Msa0346690:CDS |
| GAAGAGCAAAAGGTTTAAGG+AGG | 0.629432 | 3_1:+7331327 | Msa0346690:CDS |
| TTAGGTATGAGGATGTTCAC+AGG | 0.630659 | 3_1:+7330051 | Msa0346690:intron |
| TCCTCGGAGATGACCAAGTG+AGG | 0.635663 | 3_1:-7331509 | None:intergenic |
| GGCAGGTTGATCATCAGCAA+CGG | 0.636374 | 3_1:-7331696 | None:intergenic |
| ATGATACTCGCAACATACGA+CGG | 0.637431 | 3_1:+7331266 | Msa0346690:CDS |
| AGAGCATATAATGGATCCTG+GGG | 0.637648 | 3_1:+7329669 | Msa0346690:intron |
| GAGGGAATGGAGATACCATA+CGG | 0.637693 | 3_1:+7331815 | Msa0346690:CDS |
| CCTGTCCCTCAAATGGAGCA+AGG | 0.639890 | 3_1:+7331037 | Msa0346690:CDS |
| GGTCTTGCATCAGAATCTGG+TGG | 0.641603 | 3_1:-7330369 | None:intergenic |
| CTTGCATCAGAATCTGGTGG+CGG | 0.641738 | 3_1:-7330366 | None:intergenic |
| TAAAGGGTACTTACGAACAG+TGG | 0.644432 | 3_1:-7328224 | None:intergenic |
| ACACTCTACCTGAGGATGCG+AGG | 0.644444 | 3_1:+7329830 | Msa0346690:CDS |
| TTAACCTCTAATTTACATCA+GGG | 0.646175 | 3_1:-7333326 | None:intergenic |
| ATCAAATAACACTCTACCTG+AGG | 0.646486 | 3_1:+7329822 | Msa0346690:CDS |
| GTAGTGGATGTTCAAGATGG+TGG | 0.648922 | 3_1:+7330525 | Msa0346690:CDS |
| TACAGGAGTCCTAATAAAGG+AGG | 0.651779 | 3_1:+7331767 | Msa0346690:CDS |
| AGGGTACTTACGAACAGTGG+AGG | 0.653985 | 3_1:-7328221 | None:intergenic |
| TACGAACAACACCTAAGAGT+AGG | 0.654224 | 3_1:-7329720 | None:intergenic |
| TCTACCCATCAAATGGAGCA+AGG | 0.655123 | 3_1:+7331007 | Msa0346690:CDS |
| ACTCCAGATGCTTCTCATGG+TGG | 0.657514 | 3_1:+7330798 | Msa0346690:CDS |
| ACCTCACTTGGTCATCTCCG+AGG | 0.663917 | 3_1:+7331508 | Msa0346690:CDS |
| TGTGCATTTGAAGGACTGGA+TGG | 0.666531 | 3_1:-7330342 | None:intergenic |
| ACATCCACTACCCTTGTCGG+TGG | 0.667254 | 3_1:-7330513 | None:intergenic |
| CCTACCCCTCAAATGGAGCA+GGG | 0.672267 | 3_1:+7330977 | Msa0346690:CDS |
| AAGAGCAAAAGGTTTAAGGA+GGG | 0.683424 | 3_1:+7331328 | Msa0346690:CDS |
| TGTGGCTATACGTTTCGATG+AGG | 0.683845 | 3_1:+7330218 | Msa0346690:CDS |
| TATCTTCTTCGAGAAACCAG+AGG | 0.692196 | 3_1:-7332347 | None:intergenic |
| AAAATGAAATAAAATCCAAG+GGG | 0.696713 | 3_1:-7333401 | None:intergenic |
| GGATCGCGAAGAGCTTCCGG+TGG | 0.705021 | 3_1:-7330642 | None:intergenic |
| GGTATGAGGATGTTCACAGG+AGG | 0.722754 | 3_1:+7330054 | Msa0346690:intron |
| GTTATCATGATATGTGCTAG+GGG | 0.726681 | 3_1:-7331876 | None:intergenic |
| AAATGAAATAAAATCCAAGG+GGG | 0.728446 | 3_1:-7333400 | None:intergenic |
| TCAGATGGACAAGTTCATGG+AGG | 0.765200 | 3_1:+7330825 | Msa0346690:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTATTTTTTTTGTCTAT+TGG | + | chr3_1:7328983-7329002 | Msa0346690:intron | 10.0% |
| !!! | TTTTATTTTTTTTGTCTATT+GGG | + | chr3_1:7328984-7329003 | Msa0346690:intron | 10.0% |
| !!! | CAAATATTAAAAATTTTGTA+TGG | - | chr3_1:7329020-7329039 | None:intergenic | 10.0% |
| !!! | AGAAAAATCAATTTTTTTAA+TGG | - | chr3_1:7329374-7329393 | None:intergenic | 10.0% |
| !!! | TATCAATTTATTACTATTTT+AGG | + | chr3_1:7332668-7332687 | Msa0346690:intron | 10.0% |
| !!! | AAAATATTAAATTTTAGCTT+TGG | - | chr3_1:7333282-7333301 | None:intergenic | 10.0% |
| !!! | TTTTTAATATTTGAGTGTAT+TGG | + | chr3_1:7329027-7329046 | Msa0346690:intron | 15.0% |
| !! | AGAATAAAATAAAACTATCA+TGG | - | chr3_1:7329164-7329183 | None:intergenic | 15.0% |
| !!! | ATTTAGAGATTTTGTTTATT+AGG | + | chr3_1:7329195-7329214 | Msa0346690:intron | 15.0% |
| !! | AAAACTAAGGTAATAAAAAT+CGG | - | chr3_1:7329547-7329566 | None:intergenic | 15.0% |
| !! | ATAATAGTATGAAAAGATAA+AGG | - | chr3_1:7329948-7329967 | None:intergenic | 15.0% |
| !! | AAATTTGTAACTCAAATTAA+AGG | - | chr3_1:7330285-7330304 | None:intergenic | 15.0% |
| !! | ATAACAATGTATTATTCTAT+TGG | - | chr3_1:7330465-7330484 | None:intergenic | 15.0% |
| !! | AATGAAAAAAATTACCTATT+TGG | - | chr3_1:7331139-7331158 | None:intergenic | 15.0% |
| !!! | ATATCAGTTAATTTTTAACT+TGG | - | chr3_1:7332980-7332999 | None:intergenic | 15.0% |
| !! | AAAAATGAAATAAAATCCAA+GGG | - | chr3_1:7333405-7333424 | None:intergenic | 15.0% |
| !! | AAAAAATGAAATAAAATCCA+AGG | - | chr3_1:7333406-7333425 | None:intergenic | 15.0% |
| !! | TAATAATTTCAGAGAAATTG+GGG | - | chr3_1:7328042-7328061 | None:intergenic | 20.0% |
| !! | CTAATAATTTCAGAGAAATT+GGG | - | chr3_1:7328043-7328062 | None:intergenic | 20.0% |
| !! | TCTAATAATTTCAGAGAAAT+TGG | - | chr3_1:7328044-7328063 | None:intergenic | 20.0% |
| !!! | TTTTTTCTCAAATTCCTATA+TGG | + | chr3_1:7328309-7328328 | Msa0346690:intron | 20.0% |
| !!! | TTTTTCTCAAATTCCTATAT+GGG | + | chr3_1:7328310-7328329 | Msa0346690:intron | 20.0% |
| !!! | ATGATGTTGTTTATTCTATT+GGG | + | chr3_1:7328352-7328371 | Msa0346690:intron | 20.0% |
| !! | AAGTTTATCAAAATTCTATC+TGG | + | chr3_1:7328462-7328481 | Msa0346690:intron | 20.0% |
| !! | AGTTTATCAAAATTCTATCT+GGG | + | chr3_1:7328463-7328482 | Msa0346690:intron | 20.0% |
| !! | AAAAATTAAGCCTAAAAGAA+TGG | - | chr3_1:7328890-7328909 | None:intergenic | 20.0% |
| !!! | TTTTCTTGATTGAAAACAAA+AGG | + | chr3_1:7329388-7329407 | Msa0346690:intron | 20.0% |
| !! | AAACTAAGGTAATAAAAATC+GGG | - | chr3_1:7329546-7329565 | None:intergenic | 20.0% |
| !! | AACTTCGATTAAAAAAACTA+AGG | - | chr3_1:7329560-7329579 | None:intergenic | 20.0% |
| !!! | TATCAGTTGTATAGAAATTT+TGG | - | chr3_1:7330017-7330036 | None:intergenic | 20.0% |
| !! | CTATACAACTGATATATAAT+TGG | + | chr3_1:7330023-7330042 | Msa0346690:intron | 20.0% |
| !! | ACATAATTATCCACTATAAT+AGG | - | chr3_1:7330201-7330220 | None:intergenic | 20.0% |
| !!! | TATTATAGTGGATAATTATG+TGG | + | chr3_1:7330200-7330219 | Msa0346690:CDS | 20.0% |
| !!! | ATAAGTTCTATGTTGATAAA+AGG | - | chr3_1:7330261-7330280 | None:intergenic | 20.0% |
| !!! | ACTTGTTTTCTTGTATTTTT+AGG | + | chr3_1:7330314-7330333 | Msa0346690:intron | 20.0% |
| !!! | ATTTTTTCGTATTCAATCTT+AGG | + | chr3_1:7330902-7330921 | Msa0346690:intron | 20.0% |
| !!! | TTTTTTCGTATTCAATCTTA+GGG | + | chr3_1:7330903-7330922 | Msa0346690:intron | 20.0% |
| !!! | ATCATTCAATTTGCAAATTT+TGG | + | chr3_1:7331392-7331411 | Msa0346690:intron | 20.0% |
| !! | AACTTATAAACATACAAAGA+AGG | + | chr3_1:7331468-7331487 | Msa0346690:CDS | 20.0% |
| !! | ACTTATAAACATACAAAGAA+GGG | + | chr3_1:7331469-7331488 | Msa0346690:CDS | 20.0% |
| !! | ATATACATATGACATATTGT+TGG | + | chr3_1:7332133-7332152 | Msa0346690:intron | 20.0% |
| !! | ACGAAAATATTCATTAACAA+TGG | - | chr3_1:7332172-7332191 | None:intergenic | 20.0% |
| !! | NNNNNNNTTGATACATTGTC+TGG | + | chr3_1:7332631-7332650 | Msa0346690:intron | 20.0% |
| !! | NNNNNNTTGATACATTGTCT+GGG | + | chr3_1:7332632-7332651 | Msa0346690:intron | 20.0% |
| !! | ATAAGTTGTTATGTTAACTT+TGG | + | chr3_1:7332786-7332805 | Msa0346690:intron | 20.0% |
| !! | TAAATAAAAGACAGTTATGT+AGG | - | chr3_1:7333053-7333072 | None:intergenic | 20.0% |
| !! | AAATTGAAGAGTTATATGAT+TGG | + | chr3_1:7333096-7333115 | Msa0346690:intron | 20.0% |
| !!! | TAAAATACACATTTCTAAAG+GGG | - | chr3_1:7333352-7333371 | None:intergenic | 20.0% |
| !! | GTAAAATACACATTTCTAAA+GGG | - | chr3_1:7333353-7333372 | None:intergenic | 20.0% |
| !! | AAAATGAAATAAAATCCAAG+GGG | - | chr3_1:7333404-7333423 | None:intergenic | 20.0% |
| !!! | AAGGTTTTAAATTAAGTGTA+AGG | - | chr3_1:7333453-7333472 | None:intergenic | 20.0% |
| !!! | AAGTTTTGATAGCATTATTT+TGG | + | chr3_1:7333486-7333505 | Msa0346690:three_prime_UTR | 20.0% |
| !!! | AAAATGGGTTTTGAAGTAAA+GGG | - | chr3_1:7328243-7328262 | None:intergenic | 25.0% |
| !!! | AAAAATGGGTTTTGAAGTAA+AGG | - | chr3_1:7328244-7328263 | None:intergenic | 25.0% |
| ! | AAAAATCACAAAACCCATAT+AGG | - | chr3_1:7328326-7328345 | None:intergenic | 25.0% |
| !!! | TATATGGGTTTTGTGATTTT+TGG | + | chr3_1:7328325-7328344 | Msa0346690:intron | 25.0% |
| !! | GATGATGTTGTTTATTCTAT+TGG | + | chr3_1:7328351-7328370 | Msa0346690:intron | 25.0% |
| ! | GTAATGTTACTCATTCTATT+GGG | + | chr3_1:7328505-7328524 | Msa0346690:intron | 25.0% |
| !! | ATTTTTCTCAAAATCCTATC+TGG | + | chr3_1:7328604-7328623 | Msa0346690:intron | 25.0% |
| !! | TTTTTCTCAAAATCCTATCT+GGG | + | chr3_1:7328605-7328624 | Msa0346690:intron | 25.0% |
| !!! | GTTTTTGGATTTTTTTTGAG+CGG | + | chr3_1:7328627-7328646 | Msa0346690:intron | 25.0% |
| ! | GGTAATATTGTTCATTCTAA+TGG | + | chr3_1:7328648-7328667 | Msa0346690:intron | 25.0% |
| ! | AAGTTTATCAAAAATCCATC+TGG | + | chr3_1:7328697-7328716 | Msa0346690:intron | 25.0% |
| ! | AGTTTATCAAAAATCCATCT+GGG | + | chr3_1:7328698-7328717 | Msa0346690:intron | 25.0% |
| ! | AATAACTGAAAACCCAAATT+GGG | - | chr3_1:7328851-7328870 | None:intergenic | 25.0% |
| ! | AAATAACTGAAAACCCAAAT+TGG | - | chr3_1:7328852-7328871 | None:intergenic | 25.0% |
| ! | ACTAACTTCAATAACTTTCA+AGG | - | chr3_1:7329093-7329112 | None:intergenic | 25.0% |
| ! | AACAATGTCAATAGATATTG+TGG | - | chr3_1:7329232-7329251 | None:intergenic | 25.0% |
| ! | AAAATCAGATAATGTTACTC+TGG | + | chr3_1:7329298-7329317 | Msa0346690:intron | 25.0% |
| ! | AAATCAGATAATGTTACTCT+GGG | + | chr3_1:7329299-7329318 | Msa0346690:intron | 25.0% |
| !!! | TTCAGTTTTTAAGTGTGTAA+AGG | + | chr3_1:7329579-7329598 | Msa0346690:intron | 25.0% |
| ! | GGCTATGAAATAGATATTAA+CGG | + | chr3_1:7329913-7329932 | Msa0346690:CDS | 25.0% |
| ! | GCTATGAAATAGATATTAAC+GGG | + | chr3_1:7329914-7329933 | Msa0346690:CDS | 25.0% |
| ! | GATATATAATTGGTTGTCTT+AGG | + | chr3_1:7330033-7330052 | Msa0346690:intron | 25.0% |
| !!! | TTATTCTATTGGTTCATAAG+AGG | - | chr3_1:7330454-7330473 | None:intergenic | 25.0% |
| !! | AATATTTTCAACAGCATCAT+TGG | - | chr3_1:7330670-7330689 | None:intergenic | 25.0% |
| ! | TGAAAATATTCCAACAGATA+TGG | + | chr3_1:7330680-7330699 | Msa0346690:CDS | 25.0% |
| !!! | AATAACAGTTTTATGCTGAA+AGG | - | chr3_1:7332027-7332046 | None:intergenic | 25.0% |
| ! | TCATTAACAATGGAACAAAA+CGG | - | chr3_1:7332162-7332181 | None:intergenic | 25.0% |
| ! | AGTTAACATAACAACTTATG+TGG | - | chr3_1:7332785-7332804 | None:intergenic | 25.0% |
| !!! | TTTGGTTCTTCAAAATTTCA+GGG | + | chr3_1:7332804-7332823 | Msa0346690:intron | 25.0% |
| !!! | TATGTAGGTATTTGTTTTGT+TGG | - | chr3_1:7333038-7333057 | None:intergenic | 25.0% |
| !!! | GATATAAGTTTTGGAGATTA+AGG | - | chr3_1:7333160-7333179 | None:intergenic | 25.0% |
| !! | CAACATACAGATATAAGTTT+TGG | - | chr3_1:7333169-7333188 | None:intergenic | 25.0% |
| ! | TTAACCTCTAATTTACATCA+GGG | - | chr3_1:7333329-7333348 | None:intergenic | 25.0% |
| ! | GGTAAAATACACATTTCTAA+AGG | - | chr3_1:7333354-7333373 | None:intergenic | 25.0% |
| ! | TACCTTAAAGAGTAAATTAG+AGG | + | chr3_1:7333370-7333389 | Msa0346690:three_prime_UTR | 25.0% |
| ! | AACCTCTAATTTACTCTTTA+AGG | - | chr3_1:7333375-7333394 | None:intergenic | 25.0% |
| ! | AAATGAAATAAAATCCAAGG+GGG | - | chr3_1:7333403-7333422 | None:intergenic | 25.0% |
| ! | AATAATGCTATCAAAACTTG+AGG | - | chr3_1:7333485-7333504 | None:intergenic | 25.0% |
| ! | GTTTTACTCTCAAACGTTTT+TGG | + | chr3_1:7328111-7328130 | Msa0346690:CDS | 30.0% |
| !!! | TGGGTTGAGTTTTTTTTTGT+GGG | + | chr3_1:7328482-7328501 | Msa0346690:intron | 30.0% |
| GGTAATGTTACTCATTCTAT+TGG | + | chr3_1:7328504-7328523 | Msa0346690:intron | 30.0% | |
| AAAAATCCAAAAACCCAGAT+AGG | - | chr3_1:7328621-7328640 | None:intergenic | 30.0% | |
| !!! | GGATTTTAATTTTTCTGCGA+TGG | + | chr3_1:7328669-7328688 | Msa0346690:intron | 30.0% |
| AAAAAATTCTCAAACCCAGA+TGG | - | chr3_1:7328715-7328734 | None:intergenic | 30.0% | |
| !!! | TCTGGGTTTGAGAATTTTTT+AGG | + | chr3_1:7328715-7328734 | Msa0346690:intron | 30.0% |
| !!! | CTGGGTTTGAGAATTTTTTA+GGG | + | chr3_1:7328716-7328735 | Msa0346690:intron | 30.0% |
| !!! | TGGGTTTGAGAATTTTTTAG+GGG | + | chr3_1:7328717-7328736 | Msa0346690:intron | 30.0% |
| !! | GATTTTTGAGCCATTCTTTT+AGG | + | chr3_1:7328877-7328896 | Msa0346690:intron | 30.0% |
| ! | ATAATGTTACTCTGGGTTTT+CGG | + | chr3_1:7329306-7329325 | Msa0346690:intron | 30.0% |
| GTTTCTTTCAGAGCATATAA+TGG | + | chr3_1:7329660-7329679 | Msa0346690:intron | 30.0% | |
| ATAAAAGGAATGAAGAGGAA+AGG | - | chr3_1:7330246-7330265 | None:intergenic | 30.0% | |
| ! | TGTTGATAAAAGGAATGAAG+AGG | - | chr3_1:7330251-7330270 | None:intergenic | 30.0% |
| GATTGGGGAATAATTCTATA+AGG | - | chr3_1:7330492-7330511 | None:intergenic | 30.0% | |
| CGACAAAAATGTTCATGAAA+AGG | + | chr3_1:7330707-7330726 | Msa0346690:CDS | 30.0% | |
| CGTATGTAAATGTAAGAGAA+AGG | - | chr3_1:7330861-7330880 | None:intergenic | 30.0% | |
| ! | TACCTATTTGGTAACACTAT+GGG | - | chr3_1:7331127-7331146 | None:intergenic | 30.0% |
| ! | TTACCTATTTGGTAACACTA+TGG | - | chr3_1:7331128-7331147 | None:intergenic | 30.0% |
| CTTTCTTCATGACTCTATAA+TGG | - | chr3_1:7331240-7331259 | None:intergenic | 30.0% | |
| TATGTTGCGAGTATCATTAA+GGG | - | chr3_1:7331263-7331282 | None:intergenic | 30.0% | |
| TATATGTTCAAAACCTCACT+TGG | + | chr3_1:7331496-7331515 | Msa0346690:CDS | 30.0% | |
| GGAGTAATAGTAGTATTATC+CGG | - | chr3_1:7331542-7331561 | None:intergenic | 30.0% | |
| TGTTATCATGATATGTGCTA+GGG | - | chr3_1:7331880-7331899 | None:intergenic | 30.0% | |
| ATGTTATCATGATATGTGCT+AGG | - | chr3_1:7331881-7331900 | None:intergenic | 30.0% | |
| GATTAGTATCTGAAAAGTCA+TGG | - | chr3_1:7331913-7331932 | None:intergenic | 30.0% | |
| AATCAATTTATCAGTTCTGC+TGG | + | chr3_1:7331929-7331948 | Msa0346690:CDS | 30.0% | |
| !! | AGTTTTATGCTGAAAGGAAA+TGG | - | chr3_1:7332021-7332040 | None:intergenic | 30.0% |
| ! | TCTTAACCTTGTTATATTGC+AGG | + | chr3_1:7332323-7332342 | Msa0346690:intron | 30.0% |
| ! | GACGTAAACTTTTTAATGAC+AGG | + | chr3_1:7332492-7332511 | Msa0346690:intron | 30.0% |
| !! | CTTTGGTTCTTCAAAATTTC+AGG | + | chr3_1:7332803-7332822 | Msa0346690:intron | 30.0% |
| ! | TTGGTTCTTCAAAATTTCAG+GGG | + | chr3_1:7332805-7332824 | Msa0346690:intron | 30.0% |
| !!! | TAGGATGTTCTTTGAAGTTT+TGG | + | chr3_1:7332939-7332958 | Msa0346690:CDS | 30.0% |
| ACTAACTGTCAAATTTGATG+TGG | + | chr3_1:7333072-7333091 | Msa0346690:intron | 30.0% | |
| ATATCTGTATGTTGCATTAC+AGG | + | chr3_1:7333175-7333194 | Msa0346690:intron | 30.0% | |
| TCTTATTGATGTACAACAAG+AGG | + | chr3_1:7333214-7333233 | Msa0346690:CDS | 30.0% | |
| TTGAAGCTAATATCACCATA+AGG | - | chr3_1:7333242-7333261 | None:intergenic | 30.0% | |
| GTTAACCTCTAATTTACATC+AGG | - | chr3_1:7333330-7333349 | None:intergenic | 30.0% | |
| AAACTTGAGGAGAAATCATA+AGG | - | chr3_1:7333472-7333491 | None:intergenic | 30.0% | |
| !! | ATGGGTTTTGTGATTTTTGG+AGG | + | chr3_1:7328328-7328347 | Msa0346690:intron | 35.0% |
| !! | TGGGTTTTGTGATTTTTGGA+GGG | + | chr3_1:7328329-7328348 | Msa0346690:intron | 35.0% |
| !!! | CTGGGTTGAGTTTTTTTTTG+TGG | + | chr3_1:7328481-7328500 | Msa0346690:intron | 35.0% |
| !!! | GGGTTGAGTTTTTTTTTGTG+GGG | + | chr3_1:7328483-7328502 | Msa0346690:intron | 35.0% |
| ! | CAAAATCCTATCTGGGTTTT+TGG | + | chr3_1:7328612-7328631 | Msa0346690:intron | 35.0% |
| !!! | GGGTTTGAGAATTTTTTAGG+GGG | + | chr3_1:7328718-7328737 | Msa0346690:intron | 35.0% |
| ATCAAAACCCAAACCCAATT+TGG | + | chr3_1:7328835-7328854 | Msa0346690:intron | 35.0% | |
| TCAAAACCCAAACCCAATTT+GGG | + | chr3_1:7328836-7328855 | Msa0346690:intron | 35.0% | |
| TGAAAACCCAAATTGGGTTT+GGG | - | chr3_1:7328845-7328864 | None:intergenic | 35.0% | |
| !!! | GTATTGGTTCCTTTTGTGAA+TGG | + | chr3_1:7329043-7329062 | Msa0346690:intron | 35.0% |
| !! | ACTTGCTATGCCATAAAAGT+GGG | - | chr3_1:7329502-7329521 | None:intergenic | 35.0% |
| !! | AACTTGCTATGCCATAAAAG+TGG | - | chr3_1:7329503-7329522 | None:intergenic | 35.0% |
| TAGCAAGTTTCAGCCTTTAT+TGG | + | chr3_1:7329514-7329533 | Msa0346690:intron | 35.0% | |
| ATCAAATAACACTCTACCTG+AGG | + | chr3_1:7329822-7329841 | Msa0346690:CDS | 35.0% | |
| AATTGGTTGTCTTAGGTATG+AGG | + | chr3_1:7330040-7330059 | Msa0346690:intron | 35.0% | |
| AGATCGAAGTCCTATTATAG+TGG | + | chr3_1:7330188-7330207 | Msa0346690:intron | 35.0% | |
| AAAGCTTACTCTTCCTCATT+TGG | - | chr3_1:7330393-7330412 | None:intergenic | 35.0% | |
| !!! | AGAGTAAGCTTTGTTGGTTT+TGG | + | chr3_1:7330401-7330420 | Msa0346690:intron | 35.0% |
| GGTAGTATGTGACTCTATAT+GGG | - | chr3_1:7330559-7330578 | None:intergenic | 35.0% | |
| TGGTAGTATGTGACTCTATA+TGG | - | chr3_1:7330560-7330579 | None:intergenic | 35.0% | |
| TAGCCATCATCATATCTTTC+AGG | + | chr3_1:7330596-7330615 | Msa0346690:CDS | 35.0% | |
| GATCCTGAAAGATATGATGA+TGG | - | chr3_1:7330602-7330621 | None:intergenic | 35.0% | |
| ! | TGGCAATGTCTGTTTTGTAA+CGG | - | chr3_1:7330625-7330644 | None:intergenic | 35.0% |
| ! | TTTTCAACAGCATCATTGGA+GGG | - | chr3_1:7330666-7330685 | None:intergenic | 35.0% |
| ! | ATTTTCAACAGCATCATTGG+AGG | - | chr3_1:7330667-7330686 | None:intergenic | 35.0% |
| TTGTCGATATCCATATCTGT+TGG | - | chr3_1:7330693-7330712 | None:intergenic | 35.0% | |
| CTAAGAGATGGTTCAGAAAT+TGG | - | chr3_1:7330929-7330948 | None:intergenic | 35.0% | |
| CAATTTCTGAACCATCTCTT+AGG | + | chr3_1:7330927-7330946 | Msa0346690:CDS | 35.0% | |
| AAAGAACAACTCCTAAGAGA+TGG | - | chr3_1:7330941-7330960 | None:intergenic | 35.0% | |
| TTTCTCTTCCTTACTCTTTG+AGG | - | chr3_1:7331088-7331107 | None:intergenic | 35.0% | |
| ! | ACCTATTTGGTAACACTATG+GGG | - | chr3_1:7331126-7331145 | None:intergenic | 35.0% |
| AGAAACGAGTATAGGAAAAC+CGG | - | chr3_1:7331205-7331224 | None:intergenic | 35.0% | |
| CAAACATGAGAAACGAGTAT+AGG | - | chr3_1:7331213-7331232 | None:intergenic | 35.0% | |
| CTATACTCGTTTCTCATGTT+TGG | + | chr3_1:7331211-7331230 | Msa0346690:intron | 35.0% | |
| GTATGTTGCGAGTATCATTA+AGG | - | chr3_1:7331264-7331283 | None:intergenic | 35.0% | |
| ACTGAAGAGCAAAAGGTTTA+AGG | + | chr3_1:7331324-7331343 | Msa0346690:CDS | 35.0% | |
| AAGAGCAAAAGGTTTAAGGA+GGG | + | chr3_1:7331328-7331347 | Msa0346690:CDS | 35.0% | |
| ! | TTTGACCAGCCTTTATTTAC+AGG | + | chr3_1:7331355-7331374 | Msa0346690:CDS | 35.0% |
| GAACAGCTACCTGTAAATAA+AGG | - | chr3_1:7331367-7331386 | None:intergenic | 35.0% | |
| CATTCCTCAATTGAAACTTG+TGG | + | chr3_1:7331421-7331440 | Msa0346690:intron | 35.0% | |
| AAACTTGTGGCTTCTTATTC+AGG | + | chr3_1:7331434-7331453 | Msa0346690:intron | 35.0% | |
| TCAGCAACTTGATTAATTGG+AGG | - | chr3_1:7331563-7331582 | None:intergenic | 35.0% | |
| TCGTCAGCAACTTGATTAAT+TGG | - | chr3_1:7331566-7331585 | None:intergenic | 35.0% | |
| ! | ATTTCAGGTGCATCAGTTAT+TGG | - | chr3_1:7331590-7331609 | None:intergenic | 35.0% |
| ! | ATTTCAGGTGCATCAGTTAT+TGG | - | chr3_1:7331590-7331609 | None:intergenic | 35.0% |
| GTTATCATGATATGTGCTAG+GGG | - | chr3_1:7331879-7331898 | None:intergenic | 35.0% | |
| ATCGTAAGAGAGCAAAAAGA+TGG | - | chr3_1:7332105-7332124 | None:intergenic | 35.0% | |
| ! | TCTTTTTGCTCTCTTACGAT+AGG | + | chr3_1:7332105-7332124 | Msa0346690:intron | 35.0% |
| TTGCACACAATATCCTTGTA+CGG | + | chr3_1:7332255-7332274 | Msa0346690:intron | 35.0% | |
| ! | AAAATAGAACATACTGGCTG+TGG | - | chr3_1:7332382-7332401 | None:intergenic | 35.0% |
| GACACGAAAATAGAACATAC+TGG | - | chr3_1:7332388-7332407 | None:intergenic | 35.0% | |
| CATTAAATCACCTTAGCGAA+AGG | + | chr3_1:7332729-7332748 | Msa0346690:intron | 35.0% | |
| CTATGGAAAAGCTTTCCATT+TGG | + | chr3_1:7332752-7332771 | Msa0346690:intron | 35.0% | |
| TTTCAGCTTGAACAAGATCT+TGG | + | chr3_1:7332891-7332910 | Msa0346690:CDS | 35.0% | |
| AAACTAGAAAGATTGCTGCT+AGG | + | chr3_1:7332920-7332939 | Msa0346690:CDS | 35.0% | |
| ATTTACATCAGGGACTAAAC+TGG | - | chr3_1:7333319-7333338 | None:intergenic | 35.0% | |
| TAGTCCCTGATGTAAATTAG+AGG | + | chr3_1:7333322-7333341 | Msa0346690:three_prime_UTR | 35.0% | |
| !! | TAAAGGGTACTTACGAACAG+TGG | - | chr3_1:7328227-7328246 | None:intergenic | 40.0% |
| CTGAAAACCCAAATTGGGTT+TGG | - | chr3_1:7328846-7328865 | None:intergenic | 40.0% | |
| GAGTCTGTTAGTTCCTATTG+TGG | + | chr3_1:7328910-7328929 | Msa0346690:intron | 40.0% | |
| TCTGTTAGTTCCTATTGTGG+TGG | + | chr3_1:7328913-7328932 | Msa0346690:intron | 40.0% | |
| ! | TTGGTTCCTTTTGTGAATGG+TGG | + | chr3_1:7329046-7329065 | Msa0346690:intron | 40.0% |
| ! | TGGTTCCTTTTGTGAATGGT+GGG | + | chr3_1:7329047-7329066 | Msa0346690:intron | 40.0% |
| AGGGACAATGTTACTCTGTA+GGG | + | chr3_1:7329338-7329357 | Msa0346690:intron | 40.0% | |
| !! | CGGTTTGTTTCCCACTTTTA+TGG | + | chr3_1:7329489-7329508 | Msa0346690:intron | 40.0% |
| AATCGGGTCTACTCCAATAA+AGG | - | chr3_1:7329530-7329549 | None:intergenic | 40.0% | |
| !! | TCAGAGCATATAATGGATCC+TGG | + | chr3_1:7329667-7329686 | Msa0346690:intron | 40.0% |
| !! | CAGAGCATATAATGGATCCT+GGG | + | chr3_1:7329668-7329687 | Msa0346690:intron | 40.0% |
| !! | AGAGCATATAATGGATCCTG+GGG | + | chr3_1:7329669-7329688 | Msa0346690:intron | 40.0% |
| TCCCATTGCATTAAGGATGT+CGG | + | chr3_1:7329693-7329712 | Msa0346690:CDS | 40.0% | |
| TACGAACAACACCTAAGAGT+AGG | - | chr3_1:7329723-7329742 | None:intergenic | 40.0% | |
| CAAGATTGCAGTCGTTAAGA+AGG | - | chr3_1:7329768-7329787 | None:intergenic | 40.0% | |
| GGCATGGTAATAGAATGAAC+CGG | - | chr3_1:7329862-7329881 | None:intergenic | 40.0% | |
| TTAGGTATGAGGATGTTCAC+AGG | + | chr3_1:7330051-7330070 | Msa0346690:intron | 40.0% | |
| CAAGATGAGATTACTCTTGC+AGG | + | chr3_1:7330080-7330099 | Msa0346690:CDS | 40.0% | |
| ACTCTTGCAGGTTAACTAAG+TGG | + | chr3_1:7330092-7330111 | Msa0346690:intron | 40.0% | |
| !! | TTTGGTCTTGCATCAGAATC+TGG | - | chr3_1:7330375-7330394 | None:intergenic | 40.0% |
| TTCTGATGCAAGACCAAATG+AGG | + | chr3_1:7330377-7330396 | Msa0346690:CDS | 40.0% | |
| ! | TGAGGAAGAGTAAGCTTTGT+TGG | + | chr3_1:7330395-7330414 | Msa0346690:intron | 40.0% |
| TGTGACTCTATATGGGAACT+TGG | - | chr3_1:7330552-7330571 | None:intergenic | 40.0% | |
| GCTATCGTCACTATTATGAC+TGG | - | chr3_1:7330580-7330599 | None:intergenic | 40.0% | |
| ! | GGCAATGTCTGTTTTGTAAC+GGG | - | chr3_1:7330624-7330643 | None:intergenic | 40.0% |
| TACAAAACAGACATTGCCAC+CGG | + | chr3_1:7330626-7330645 | Msa0346690:CDS | 40.0% | |
| TGGATCTCAGGAATCATTTC+AGG | - | chr3_1:7330741-7330760 | None:intergenic | 40.0% | |
| ACAGAGTTCTACCCATCAAA+TGG | + | chr3_1:7331000-7331019 | Msa0346690:CDS | 40.0% | |
| ACCCCATAGTGTTACCAAAT+AGG | + | chr3_1:7331122-7331141 | Msa0346690:CDS | 40.0% | |
| CTACAACATATAGTTACGCC+CGG | + | chr3_1:7331183-7331202 | Msa0346690:intron | 40.0% | |
| GAAACGAGTATAGGAAAACC+GGG | - | chr3_1:7331204-7331223 | None:intergenic | 40.0% | |
| ATGATACTCGCAACATACGA+CGG | + | chr3_1:7331266-7331285 | Msa0346690:CDS | 40.0% | |
| GAAGAGCAAAAGGTTTAAGG+AGG | + | chr3_1:7331327-7331346 | Msa0346690:CDS | 40.0% | |
| AGCTACCTGTAAATAAAGGC+TGG | - | chr3_1:7331363-7331382 | None:intergenic | 40.0% | |
| GAAGCCACAAGTTTCAATTG+AGG | - | chr3_1:7331428-7331447 | None:intergenic | 40.0% | |
| ATTATCCGGATGATCTTCCT+CGG | - | chr3_1:7331528-7331547 | None:intergenic | 40.0% | |
| !! | TTTGCTTTGAGTTGGGATAG+TGG | - | chr3_1:7331720-7331739 | None:intergenic | 40.0% |
| ! | CAGTGTCTTTGCTTTGAGTT+GGG | - | chr3_1:7331727-7331746 | None:intergenic | 40.0% |
| ! | TCAGTGTCTTTGCTTTGAGT+TGG | - | chr3_1:7331728-7331747 | None:intergenic | 40.0% |
| AGATAATCCCAAGTGCTTAC+AGG | + | chr3_1:7331750-7331769 | Msa0346690:CDS | 40.0% | |
| GCTTACAGGAGTCCTAATAA+AGG | + | chr3_1:7331764-7331783 | Msa0346690:CDS | 40.0% | |
| TACAGGAGTCCTAATAAAGG+AGG | + | chr3_1:7331767-7331786 | Msa0346690:CDS | 40.0% | |
| TTGCTCTCTTACGATAGGTA+AGG | + | chr3_1:7332110-7332129 | Msa0346690:intron | 40.0% | |
| GTACAAGGATATTGTGTGCA+AGG | - | chr3_1:7332256-7332275 | None:intergenic | 40.0% | |
| ! | TCCTTGTACGGTTTTGCTTT+TGG | + | chr3_1:7332267-7332286 | Msa0346690:intron | 40.0% |
| ACCAAAAGCAAAACCGTACA+AGG | - | chr3_1:7332271-7332290 | None:intergenic | 40.0% | |
| AGAGGTCCTGCAATATAACA+AGG | - | chr3_1:7332332-7332351 | None:intergenic | 40.0% | |
| TTGTTATATTGCAGGACCTC+TGG | + | chr3_1:7332331-7332350 | Msa0346690:intron | 40.0% | |
| TATCTTCTTCGAGAAACCAG+AGG | - | chr3_1:7332350-7332369 | None:intergenic | 40.0% | |
| ! | TTTTCCATAGCCTTTCGCTA+AGG | - | chr3_1:7332742-7332761 | None:intergenic | 40.0% |
| TTATGTGGCACAGATCCAAA+TGG | - | chr3_1:7332770-7332789 | None:intergenic | 40.0% | |
| !! | TGCTCTGGAATTGTTGTACA+TGG | - | chr3_1:7332859-7332878 | None:intergenic | 40.0% |
| TTCAAGCTGAAATCTTCAGC+AGG | - | chr3_1:7332883-7332902 | None:intergenic | 40.0% | |
| AGCTTGAACAAGATCTTGGA+TGG | + | chr3_1:7332895-7332914 | Msa0346690:CDS | 40.0% | |
| !! | TTTTGTTGGCGAGCTTTGAT+TGG | - | chr3_1:7333024-7333043 | None:intergenic | 40.0% |
| !!! | ATTTTAGCTTTGGCAAGTGC+TGG | - | chr3_1:7333272-7333291 | None:intergenic | 40.0% |
| TGAAATAAAATCCAAGGGGG+TGG | - | chr3_1:7333400-7333419 | None:intergenic | 40.0% | |
| !!! | CAAACGTTTTTGGCGCGAAA+AGG | + | chr3_1:7328121-7328140 | Msa0346690:CDS | 45.0% |
| GTTAGTTCCTATTGTGGTGG+TGG | + | chr3_1:7328916-7328935 | Msa0346690:intron | 45.0% | |
| ! | GGTTCCTTTTGTGAATGGTG+GGG | + | chr3_1:7329048-7329067 | Msa0346690:intron | 45.0% |
| AACACCCCACCATTCACAAA+AGG | - | chr3_1:7329055-7329074 | None:intergenic | 45.0% | |
| ! | TGGGGTGTTTGTGACAATTG+AGG | + | chr3_1:7329066-7329085 | Msa0346690:intron | 45.0% |
| GAGGGACAATGTTACTCTGT+AGG | + | chr3_1:7329337-7329356 | Msa0346690:intron | 45.0% | |
| !!! | TTGAACCGCCGTTTTTTGAC+CGG | + | chr3_1:7329461-7329480 | Msa0346690:intron | 45.0% |
| ATCATCCGGTCAAAAAACGG+CGG | - | chr3_1:7329469-7329488 | None:intergenic | 45.0% | |
| CCGATCATCCGGTCAAAAAA+CGG | - | chr3_1:7329472-7329491 | None:intergenic | 45.0% | |
| !!! | CCGTTTTTTGACCGGATGAT+CGG | + | chr3_1:7329469-7329488 | Msa0346690:intron | 45.0% |
| TGGGAAACAAACCGATCATC+CGG | - | chr3_1:7329483-7329502 | None:intergenic | 45.0% | |
| GCCGACATCCTTAATGCAAT+GGG | - | chr3_1:7329697-7329716 | None:intergenic | 45.0% | |
| AGCCGACATCCTTAATGCAA+TGG | - | chr3_1:7329698-7329717 | None:intergenic | 45.0% | |
| AAGCGCATCAAGGTCAAAAG+TGG | - | chr3_1:7329887-7329906 | None:intergenic | 45.0% | |
| GACCTTGATGCGCTTAACTT+AGG | + | chr3_1:7329892-7329911 | Msa0346690:CDS | 45.0% | |
| AGCCTAAGTTAAGCGCATCA+AGG | - | chr3_1:7329897-7329916 | None:intergenic | 45.0% | |
| ATAGGACTTCGATCTGCACA+TGG | - | chr3_1:7330183-7330202 | None:intergenic | 45.0% | |
| TGTGGCTATACGTTTCGATG+AGG | + | chr3_1:7330218-7330237 | Msa0346690:CDS | 45.0% | |
| TGTGCATTTGAAGGACTGGA+TGG | - | chr3_1:7330345-7330364 | None:intergenic | 45.0% | |
| TGAACATCCACTACCCTTGT+CGG | - | chr3_1:7330519-7330538 | None:intergenic | 45.0% | |
| !! | AGGGTAGTGGATGTTCAAGA+TGG | + | chr3_1:7330522-7330541 | Msa0346690:CDS | 45.0% |
| !! | GTAGTGGATGTTCAAGATGG+TGG | + | chr3_1:7330525-7330544 | Msa0346690:CDS | 45.0% |
| !! | TGAGAAGCATCTGGAGTTAG+TGG | - | chr3_1:7330795-7330814 | None:intergenic | 45.0% |
| CTAACTCCAGATGCTTCTCA+TGG | + | chr3_1:7330795-7330814 | Msa0346690:CDS | 45.0% | |
| TCCATGAACTTGTCCATCTG+AGG | - | chr3_1:7330826-7330845 | None:intergenic | 45.0% | |
| TCAGATGGACAAGTTCATGG+AGG | + | chr3_1:7330825-7330844 | Msa0346690:CDS | 45.0% | |
| TCTACCCATCAAATGGAGCA+AGG | + | chr3_1:7331007-7331026 | Msa0346690:CDS | 45.0% | |
| CTGTCCTTGCTCCATTTGAT+GGG | - | chr3_1:7331014-7331033 | None:intergenic | 45.0% | |
| CATCAAATGGAGCAAGGACA+GGG | + | chr3_1:7331013-7331032 | Msa0346690:CDS | 45.0% | |
| CGGGCGTAACTATATGTTGT+AGG | - | chr3_1:7331185-7331204 | None:intergenic | 45.0% | |
| CATGGGAACTGAAGAGCAAA+AGG | + | chr3_1:7331317-7331336 | Msa0346690:CDS | 45.0% | |
| GGCTCATCAACAACGATTTC+AGG | - | chr3_1:7331641-7331660 | None:intergenic | 45.0% | |
| TGAGCCAATAACAGATGCAC+CGG | + | chr3_1:7331655-7331674 | Msa0346690:CDS | 45.0% | |
| ATCTCCGGTGCATCTGTTAT+TGG | - | chr3_1:7331662-7331681 | None:intergenic | 45.0% | |
| GAGACAATGCGTTCAATCTC+CGG | - | chr3_1:7331677-7331696 | None:intergenic | 45.0% | |
| TAGGACTCCTGTAAGCACTT+GGG | - | chr3_1:7331760-7331779 | None:intergenic | 45.0% | |
| TTAGGACTCCTGTAAGCACT+TGG | - | chr3_1:7331761-7331780 | None:intergenic | 45.0% | |
| GTCGCAACACCTCCTTTATT+AGG | - | chr3_1:7331779-7331798 | None:intergenic | 45.0% | |
| ACTCCTACTTCGGTTTCTGA+GGG | + | chr3_1:7331797-7331816 | Msa0346690:CDS | 45.0% | |
| ATTCCCTCAGAAACCGAAGT+AGG | - | chr3_1:7331803-7331822 | None:intergenic | 45.0% | |
| ! | TACTTCGGTTTCTGAGGGAA+TGG | + | chr3_1:7331802-7331821 | Msa0346690:CDS | 45.0% |
| GAGGGAATGGAGATACCATA+CGG | + | chr3_1:7331815-7331834 | Msa0346690:CDS | 45.0% | |
| GTGTGCAAGGTAGAATATGC+AGG | - | chr3_1:7332243-7332262 | None:intergenic | 45.0% | |
| ATACATTGTCTGGGAGGACT+AGG | + | chr3_1:7332641-7332660 | Msa0346690:intron | 45.0% | |
| ATCACCTTAGCGAAAGGCTA+TGG | + | chr3_1:7332735-7332754 | Msa0346690:intron | 45.0% | |
| AAATCTTCAGCAGGTTGCTC+TGG | - | chr3_1:7332874-7332893 | None:intergenic | 45.0% | |
| GTACAACAAGAGGAGCCTTA+TGG | + | chr3_1:7333224-7333243 | Msa0346690:CDS | 45.0% | |
| !! | CAATAAAAAATAAAAAAAAT+GGG | - | chr3_1:7328258-7328277 | None:intergenic | 5.0% |
| !! | ACAATAAAAAATAAAAAAAA+TGG | - | chr3_1:7328259-7328278 | None:intergenic | 5.0% |
| !!! | AAATATTAAAAATTTTGTAT+GGG | - | chr3_1:7329019-7329038 | None:intergenic | 5.0% |
| !!! | TTATTTCATTTTTTTTTTAT+AGG | + | chr3_1:7333412-7333431 | Msa0346690:three_prime_UTR | 5.0% |
| GCGAAAAGGACCACTCTCAA+CGG | + | chr3_1:7328135-7328154 | Msa0346690:CDS | 50.0% | |
| AAGGACCACTCTCAACGGTT+TGG | + | chr3_1:7328140-7328159 | Msa0346690:CDS | 50.0% | |
| GGGTACTTACGAACAGTGGA+GGG | - | chr3_1:7328223-7328242 | None:intergenic | 50.0% | |
| ! | AGGGTACTTACGAACAGTGG+AGG | - | chr3_1:7328224-7328243 | None:intergenic | 50.0% |
| !! | TTCCTATTGTGGTGGTGGTG+AGG | + | chr3_1:7328921-7328940 | Msa0346690:intron | 50.0% |
| CTTAATGCAATGGGAACCCC+AGG | - | chr3_1:7329688-7329707 | None:intergenic | 50.0% | |
| CTGGGGTTCCCATTGCATTA+AGG | + | chr3_1:7329686-7329705 | Msa0346690:CDS | 50.0% | |
| !! | ATGTCGGCTCACCTACTCTT+AGG | + | chr3_1:7329709-7329728 | Msa0346690:CDS | 50.0% |
| AAGGTCAAAAGTGGCTGGCA+TGG | - | chr3_1:7329878-7329897 | None:intergenic | 50.0% | |
| GCATCAAGGTCAAAAGTGGC+TGG | - | chr3_1:7329883-7329902 | None:intergenic | 50.0% | |
| GGTATGAGGATGTTCACAGG+AGG | + | chr3_1:7330054-7330073 | Msa0346690:intron | 50.0% | |
| CGGTTGTGCATTTGAAGGAC+TGG | - | chr3_1:7330349-7330368 | None:intergenic | 50.0% | |
| CTTGCATCAGAATCTGGTGG+CGG | - | chr3_1:7330369-7330388 | None:intergenic | 50.0% | |
| GGTCTTGCATCAGAATCTGG+TGG | - | chr3_1:7330372-7330391 | None:intergenic | 50.0% | |
| TACCCTTGTCGGTGGAGATT+GGG | - | chr3_1:7330508-7330527 | None:intergenic | 50.0% | |
| !! | TCTAGCTGGTTGAGTTGGAG+GGG | - | chr3_1:7330772-7330791 | None:intergenic | 50.0% |
| !! | GTCTAGCTGGTTGAGTTGGA+GGG | - | chr3_1:7330773-7330792 | None:intergenic | 50.0% |
| AGTGGTCTAGCTGGTTGAGT+TGG | - | chr3_1:7330777-7330796 | None:intergenic | 50.0% | |
| ! | TCTGGAGTTAGTGGTCTAGC+TGG | - | chr3_1:7330786-7330805 | None:intergenic | 50.0% |
| ACTCCAGATGCTTCTCATGG+TGG | + | chr3_1:7330798-7330817 | Msa0346690:CDS | 50.0% | |
| GCCTCAGATGGACAAGTTCA+TGG | + | chr3_1:7330822-7330841 | Msa0346690:CDS | 50.0% | |
| GATGCTTCCTACCCCTCAAA+TGG | + | chr3_1:7330970-7330989 | Msa0346690:CDS | 50.0% | |
| TCTGTCCCTGCTCCATTTGA+GGG | - | chr3_1:7330985-7331004 | None:intergenic | 50.0% | |
| CCTGTCCTTGCTCCATTTGA+TGG | - | chr3_1:7331015-7331034 | None:intergenic | 50.0% | |
| CCATCAAATGGAGCAAGGAC+AGG | + | chr3_1:7331012-7331031 | Msa0346690:CDS | 50.0% | |
| CCTGTCCTTGCTCCATTTGA+GGG | - | chr3_1:7331015-7331034 | None:intergenic | 50.0% | |
| CCTCAAATGGAGCAAGGACA+GGG | + | chr3_1:7331043-7331062 | Msa0346690:CDS | 50.0% | |
| GTGAGAGGCCTCAAAGAGTA+AGG | + | chr3_1:7331077-7331096 | Msa0346690:CDS | 50.0% | |
| CAACATACGACGGAAGCGAA+AGG | + | chr3_1:7331276-7331295 | Msa0346690:CDS | 50.0% | |
| CGAAAGGACGTCACTGCTTT+GGG | + | chr3_1:7331292-7331311 | Msa0346690:CDS | 50.0% | |
| CATCTCCGAGGAAGATCATC+CGG | + | chr3_1:7331520-7331539 | Msa0346690:CDS | 50.0% | |
| GGCTCGTCAACAGCAATTTC+AGG | - | chr3_1:7331605-7331624 | None:intergenic | 50.0% | |
| !! | GGCAGGTTGATCATCAGCAA+CGG | - | chr3_1:7331699-7331718 | None:intergenic | 50.0% |
| !! | CTTTGAGTTGGGATAGTGGC+AGG | - | chr3_1:7331716-7331735 | None:intergenic | 50.0% |
| ! | AGGTGTTGCGACTCCTACTT+CGG | + | chr3_1:7331787-7331806 | Msa0346690:CDS | 50.0% |
| GACTCCTACTTCGGTTTCTG+AGG | + | chr3_1:7331796-7331815 | Msa0346690:CDS | 50.0% | |
| GTTTCTGATGCATGAGCTCG+AGG | - | chr3_1:7331851-7331870 | None:intergenic | 50.0% | |
| CGAGCTCATGCATCAGAAAC+TGG | + | chr3_1:7331851-7331870 | Msa0346690:CDS | 50.0% | |
| ! | TAGAACATACTGGCTGTGGC+TGG | - | chr3_1:7332378-7332397 | None:intergenic | 50.0% |
| TTAGAGGTTAACCACCCCCT+TGG | + | chr3_1:7333386-7333405 | Msa0346690:three_prime_UTR | 50.0% | |
| GCGATCCAAACCGTTGAGAG+TGG | - | chr3_1:7328148-7328167 | None:intergenic | 55.0% | |
| AGCCTCACCACCACCACAAT+AGG | - | chr3_1:7328926-7328945 | None:intergenic | 55.0% | |
| ! | TGGGTTTTCGGTCACTTGCG+AGG | + | chr3_1:7329318-7329337 | Msa0346690:intron | 55.0% |
| ! | GGGTTTTCGGTCACTTGCGA+GGG | + | chr3_1:7329319-7329338 | Msa0346690:intron | 55.0% |
| ACACTCTACCTGAGGATGCG+AGG | + | chr3_1:7329830-7329849 | Msa0346690:CDS | 55.0% | |
| ! | GGTGGCGGTTGTGCATTTGA+AGG | - | chr3_1:7330354-7330373 | None:intergenic | 55.0% |
| TTCCCCAATCTCCACCGACA+AGG | + | chr3_1:7330502-7330521 | Msa0346690:CDS | 55.0% | |
| TCCCCAATCTCCACCGACAA+GGG | + | chr3_1:7330503-7330522 | Msa0346690:CDS | 55.0% | |
| ACCCTTGTCGGTGGAGATTG+GGG | - | chr3_1:7330507-7330526 | None:intergenic | 55.0% | |
| CTACCCTTGTCGGTGGAGAT+TGG | - | chr3_1:7330509-7330528 | None:intergenic | 55.0% | |
| ATCTCCACCGACAAGGGTAG+TGG | + | chr3_1:7330509-7330528 | Msa0346690:CDS | 55.0% | |
| ACATCCACTACCCTTGTCGG+TGG | - | chr3_1:7330516-7330535 | None:intergenic | 55.0% | |
| GGGGTTTCAGCATGGATCTC+AGG | - | chr3_1:7330753-7330772 | None:intergenic | 55.0% | |
| GAGTTGGAGGGGTTTCAGCA+TGG | - | chr3_1:7330761-7330780 | None:intergenic | 55.0% | |
| !! | GGTCTAGCTGGTTGAGTTGG+AGG | - | chr3_1:7330774-7330793 | None:intergenic | 55.0% |
| TCCTACCCCTCAAATGGAGC+AGG | + | chr3_1:7330976-7330995 | Msa0346690:CDS | 55.0% | |
| CCTACCCCTCAAATGGAGCA+GGG | + | chr3_1:7330977-7330996 | Msa0346690:CDS | 55.0% | |
| CTGTCCCTGCTCCATTTGAG+GGG | - | chr3_1:7330984-7331003 | None:intergenic | 55.0% | |
| CTCTGTCCCTGCTCCATTTG+AGG | - | chr3_1:7330986-7331005 | None:intergenic | 55.0% | |
| ACAGGGTCCTGTCCCTCAAA+TGG | + | chr3_1:7331030-7331049 | Msa0346690:CDS | 55.0% | |
| CCTTGCTCCATTTGAGGGAC+AGG | - | chr3_1:7331040-7331059 | None:intergenic | 55.0% | |
| CCTGTCCCTCAAATGGAGCA+AGG | + | chr3_1:7331037-7331056 | Msa0346690:CDS | 55.0% | |
| CCCTCAAATGGAGCAAGGAC+AGG | + | chr3_1:7331042-7331061 | Msa0346690:CDS | 55.0% | |
| CCCTGTCCTTGCTCCATTTG+AGG | - | chr3_1:7331016-7331035 | None:intergenic | 55.0% | |
| AATGGAGCAAGGACAGGGTC+AGG | + | chr3_1:7331018-7331037 | Msa0346690:CDS | 55.0% | |
| CAAGGACAGGGTCAGGATCA+GGG | + | chr3_1:7331055-7331074 | Msa0346690:CDS | 55.0% | |
| GCGAAAGGACGTCACTGCTT+TGG | + | chr3_1:7331291-7331310 | Msa0346690:CDS | 55.0% | |
| ACCTCACTTGGTCATCTCCG+AGG | + | chr3_1:7331508-7331527 | Msa0346690:CDS | 55.0% | |
| TCCTCGGAGATGACCAAGTG+AGG | - | chr3_1:7331512-7331531 | None:intergenic | 55.0% | |
| CGAGGTGATGTTGCACCGTA+TGG | - | chr3_1:7331833-7331852 | None:intergenic | 55.0% | |
| TGAGGATGCGAGGCAAGCAC+CGG | + | chr3_1:7329840-7329859 | Msa0346690:CDS | 60.0% | |
| GAGGGATCGCGAAGAGCTTC+CGG | - | chr3_1:7330648-7330667 | None:intergenic | 60.0% | |
| !! | GCGCCACCATGAGAAGCATC+TGG | - | chr3_1:7330804-7330823 | None:intergenic | 60.0% |
| ! | TCTCATGGTGGCGCCTCAGA+TGG | + | chr3_1:7330810-7330829 | Msa0346690:CDS | 60.0% |
| CCCTGCTCCATTTGAGGGGT+AGG | - | chr3_1:7330980-7330999 | None:intergenic | 60.0% | |
| GCAAGGACAGGGTCAGGATC+AGG | + | chr3_1:7331054-7331073 | Msa0346690:CDS | 60.0% | |
| AGGGTCAGGATCAGGGTGAG+AGG | + | chr3_1:7331062-7331081 | Msa0346690:CDS | 60.0% | |
| ! | ACGTCACTGCTTTGGGCGCA+TGG | + | chr3_1:7331299-7331318 | Msa0346690:CDS | 60.0% |
| ! | CGTCACTGCTTTGGGCGCAT+GGG | + | chr3_1:7331300-7331319 | Msa0346690:CDS | 60.0% |
| GGTGCTTGCCTCGCATCCTC+AGG | - | chr3_1:7329841-7329860 | None:intergenic | 65.0% | |
| GGATCGCGAAGAGCTTCCGG+TGG | - | chr3_1:7330645-7330664 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 7328024 | 7333509 | 7328024 | ID=Msa0346690;Name=Msa0346690 |
| chr3_1 | mRNA | 7328024 | 7333509 | 7328024 | ID=Msa0346690-mRNA-1;Parent=Msa0346690;Name=Msa0346690-mRNA-1;_AED=0.10;_eAED=0.10;_QI=85|0.90|0.83|1|1|1|12|214|661 |
| chr3_1 | exon | 7328024 | 7328232 | 7328024 | ID=Msa0346690-mRNA-1:exon:2047;Parent=Msa0346690-mRNA-1 |
| chr3_1 | exon | 7329671 | 7329935 | 7329671 | ID=Msa0346690-mRNA-1:exon:2048;Parent=Msa0346690-mRNA-1 |
| chr3_1 | exon | 7330055 | 7330101 | 7330055 | ID=Msa0346690-mRNA-1:exon:2049;Parent=Msa0346690-mRNA-1 |
| chr3_1 | exon | 7330190 | 7330239 | 7330190 | ID=Msa0346690-mRNA-1:exon:2050;Parent=Msa0346690-mRNA-1 |
| chr3_1 | exon | 7330336 | 7330403 | 7330336 | ID=Msa0346690-mRNA-1:exon:2051;Parent=Msa0346690-mRNA-1 |
| chr3_1 | exon | 7330497 | 7330846 | 7330497 | ID=Msa0346690-mRNA-1:exon:2052;Parent=Msa0346690-mRNA-1 |
| chr3_1 | exon | 7330924 | 7331143 | 7330924 | ID=Msa0346690-mRNA-1:exon:2053;Parent=Msa0346690-mRNA-1 |
| chr3_1 | exon | 7331246 | 7331376 | 7331246 | ID=Msa0346690-mRNA-1:exon:2054;Parent=Msa0346690-mRNA-1 |
| chr3_1 | exon | 7331456 | 7331958 | 7331456 | ID=Msa0346690-mRNA-1:exon:2055;Parent=Msa0346690-mRNA-1 |
| chr3_1 | exon | 7332345 | 7332387 | 7332345 | ID=Msa0346690-mRNA-1:exon:2056;Parent=Msa0346690-mRNA-1 |
| chr3_1 | exon | 7332875 | 7332960 | 7332875 | ID=Msa0346690-mRNA-1:exon:2057;Parent=Msa0346690-mRNA-1 |
| chr3_1 | exon | 7333197 | 7333509 | 7333197 | ID=Msa0346690-mRNA-1:exon:2058;Parent=Msa0346690-mRNA-1 |
| chr3_1 | five_prime_UTR | 7328024 | 7328108 | 7328024 | ID=Msa0346690-mRNA-1:five_prime_utr;Parent=Msa0346690-mRNA-1 |
| chr3_1 | CDS | 7328109 | 7328232 | 7328109 | ID=Msa0346690-mRNA-1:cds;Parent=Msa0346690-mRNA-1 |
| chr3_1 | CDS | 7329671 | 7329935 | 7329671 | ID=Msa0346690-mRNA-1:cds;Parent=Msa0346690-mRNA-1 |
| chr3_1 | CDS | 7330055 | 7330101 | 7330055 | ID=Msa0346690-mRNA-1:cds;Parent=Msa0346690-mRNA-1 |
| chr3_1 | CDS | 7330190 | 7330239 | 7330190 | ID=Msa0346690-mRNA-1:cds;Parent=Msa0346690-mRNA-1 |
| chr3_1 | CDS | 7330336 | 7330403 | 7330336 | ID=Msa0346690-mRNA-1:cds;Parent=Msa0346690-mRNA-1 |
| chr3_1 | CDS | 7330497 | 7330846 | 7330497 | ID=Msa0346690-mRNA-1:cds;Parent=Msa0346690-mRNA-1 |
| chr3_1 | CDS | 7330924 | 7331143 | 7330924 | ID=Msa0346690-mRNA-1:cds;Parent=Msa0346690-mRNA-1 |
| chr3_1 | CDS | 7331246 | 7331376 | 7331246 | ID=Msa0346690-mRNA-1:cds;Parent=Msa0346690-mRNA-1 |
| chr3_1 | CDS | 7331456 | 7331958 | 7331456 | ID=Msa0346690-mRNA-1:cds;Parent=Msa0346690-mRNA-1 |
| chr3_1 | CDS | 7332345 | 7332387 | 7332345 | ID=Msa0346690-mRNA-1:cds;Parent=Msa0346690-mRNA-1 |
| chr3_1 | CDS | 7332875 | 7332960 | 7332875 | ID=Msa0346690-mRNA-1:cds;Parent=Msa0346690-mRNA-1 |
| chr3_1 | CDS | 7333197 | 7333295 | 7333197 | ID=Msa0346690-mRNA-1:cds;Parent=Msa0346690-mRNA-1 |
| chr3_1 | three_prime_UTR | 7333296 | 7333509 | 7333296 | ID=Msa0346690-mRNA-1:three_prime_utr;Parent=Msa0346690-mRNA-1 |
| Gene Sequence |
| Protein sequence |
