AlfalfaGEDB | Msa0354680

M. sativa cultivar zhongmu-4 / Msa0354680

KEGG: K00134
GO: GO:0000003 GO:0000302 GO:0003006 GO:0003674 GO:0003824 GO:0004365 GO:0005488 GO:0005507 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005739 GO:0005740 GO:0005773 GO:0005774 GO:0005777 GO:0005829 GO:0005886 GO:0005911 GO:0005975 GO:0005996 GO:0006006 GO:0006082 GO:0006090 GO:0006091 GO:0006094 GO:0006096 GO:0006139 GO:0006163 GO:0006164 GO:0006165 GO:0006725 GO:0006732 GO:0006733 GO:0006753 GO:0006754 GO:0006757 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006970 GO:0006979 GO:0007275 GO:0008150 GO:0008152 GO:0008270 GO:0008886 GO:0009056 GO:0009058 GO:0009108 GO:0009117 GO:0009123 GO:0009124 GO:0009126 GO:0009127 GO:0009132 GO:0009135 GO:0009141 GO:0009142 GO:0009144 GO:0009145 GO:0009150 GO:0009152 GO:0009156 GO:0009161 GO:0009165 GO:0009166 GO:0009167 GO:0009168 GO:0009179 GO:0009185 GO:0009199 GO:0009201 GO:0009205 GO:0009206 GO:0009259 GO:0009260 GO:0009266 GO:0009408 GO:0009506 GO:0009507 GO:0009536 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009636 GO:0009651 GO:0009743 GO:0009744 GO:0009791 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010154 GO:0016020 GO:0016051 GO:0016052 GO:0016053 GO:0016310 GO:0016491 GO:0016620 GO:0016903 GO:0017144 GO:0018130 GO:0019318 GO:0019319 GO:0019359 GO:0019362 GO:0019363 GO:0019438 GO:0019439 GO:0019637 GO:0019693 GO:0019752 GO:0022414 GO:0030054 GO:0030312 GO:0031090 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032501 GO:0032502 GO:0032787 GO:0034285 GO:0034404 GO:0034641 GO:0034654 GO:0034655 GO:0042221 GO:0042493 GO:0042542 GO:0042579 GO:0042742 GO:0042866 GO:0043167 GO:0043169 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043436 GO:0043891 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044270 GO:0044271 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044428 GO:0044429 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046031 GO:0046034 GO:0046364 GO:0046390 GO:0046394 GO:0046434 GO:0046483 GO:0046496 GO:0046677 GO:0046686 GO:0046700 GO:0046872 GO:0046914 GO:0046939 GO:0048046 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0051186 GO:0051188 GO:0051704 GO:0051707 GO:0051775 GO:0055044 GO:0055086 GO:0055114 GO:0061458 GO:0070013 GO:0071704 GO:0071944 GO:0072330 GO:0072521 GO:0072522 GO:0072524 GO:0072525 GO:0090407 GO:0098542 GO:0098588 GO:0098805 GO:1901135 GO:1901137 GO:1901292 GO:1901293 GO:1901360 GO:1901361 GO:1901362 GO:1901564 GO:1901566 GO:1901575 GO:1901576 GO:1901700
PFAM: PF00044.27

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0354680	KEH31729.1	75.281	89	20	1	1	89	10	96	2.64e-39	142

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0354680	sp\|P34922\|G3PC_PEA	78.049	82	16	1	1	82	9	88	4.72e-40	138

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0354680	A0A072UPF9	75.281	89	20	1	1	89	10	96	1.26e-39	142

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0164160	Msa0354680	0.877900	4.333568e-69	-8.615850e-47
Msa0234270	Msa0354680	0.806969	6.354138e-50	-8.615850e-47
Msa0354680	Msa0518950	0.841549	4.442812e-58	-8.615850e-47
Msa0354680	Msa0518970	0.830535	2.780351e-55	-8.615850e-47
Msa0354680	Msa0537720	0.806880	6.635766e-50	-8.615850e-47
Msa0354680	Msa0663800	0.904537	1.106875e-79	-8.615850e-47
Msa0354680	Msa0826320	0.842087	3.203975e-58	-8.615850e-47

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0354680	MtrunA17_Chr4g0057861	80.488	82	14	1	1	82	10	89	2.20e-42	141
Msa0354680	MtrunA17_Chr6g0458861	64.045	89	30	1	1	89	8	94	3.62e-33	117
Msa0354680	MtrunA17_Chr3g0122971	75.000	48	10	1	1	48	11	56	9.87e-19	79.0
Msa0354680	MtrunA17_Chr2g0310421	46.067	89	45	2	1	89	87	172	1.45e-18	79.0

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0354680	AT1G13440.2	67.416	89	27	1	1	89	10	96	4.38e-36	124
Msa0354680	AT1G13440.1	67.416	89	27	1	1	89	10	96	8.49e-36	124
Msa0354680	AT3G04120.1	67.416	89	27	1	1	89	10	96	1.40e-35	124
Msa0354680	AT1G16300.1	47.191	89	44	2	1	89	89	174	2.76e-19	81.6
Msa0354680	AT1G79530.1	46.067	89	45	2	1	89	91	176	3.77e-19	81.3

Find 17 sgRNAs with CRISPR-Local

Find 217 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
CTGTCCTACAACAGTGGTTT+TGG	0.176535	3_1:-26682728	Msa0354680:CDS
ATGTGTGCAAAGACGGTAAT+TGG	0.320945	3_1:+26684199	None:intergenic
AAACGATGAACTAACTATAA+AGG	0.365642	3_1:-26684251	Msa0354680:CDS
AAGAATCGGACTCGGACGTT+TGG	0.399834	3_1:-26684505	Msa0354680:CDS
GAACTATGTTTATAGGAACT+TGG	0.458558	3_1:-26683548	Msa0354680:intron
AGCCCCAAAACCACTGTTGT+AGG	0.465196	3_1:+26682724	None:intergenic
TTTCATCACCGCTAATTACA+TGG	0.472724	3_1:-26684427	Msa0354680:intron
TTTAAGTATGACAGTGTTCA+CGG	0.475837	3_1:-26684283	Msa0354680:CDS
CTGACGGGAGTTGGAAGAAT+CGG	0.489804	3_1:-26684519	Msa0354680:CDS
TGTTTGTAACTGACGGGAGT+TGG	0.534400	3_1:-26684528	None:intergenic
TTGGCTTCTCATCGAAGAGA+AGG	0.541066	3_1:+26684218	None:intergenic
ATTATACATGTGTGCAAAGA+CGG	0.544343	3_1:+26684192	None:intergenic
TGGCTTCTCATCGAAGAGAA+GGG	0.552508	3_1:+26684219	None:intergenic
TAGGAACTTGGATCAACTTG+AGG	0.554100	3_1:-26683536	Msa0354680:intron
ATGACAGTGTTCACGGACAA+TGG	0.557529	3_1:-26684276	Msa0354680:CDS
ATGTAATTAGCGGTGATGAA+AGG	0.572192	3_1:+26684429	None:intergenic
GGAGTTGGAAGAATCGGACT+CGG	0.676948	3_1:-26684513	Msa0354680:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!!	ATTCATTAAAATAGTTTTAA+TGG	-	chr3_1:26684166-26684185	Msa0354680:intron	10.0%
!!!	ATTCATTAAAATAGTTTTAA+TGG	-	chr3_1:26684166-26684185	Msa0354680:intron	10.0%
!!!	ATTTATTTTTGTGAATTTTG+TGG	-	chr3_1:26682910-26682929	Msa0354680:intron	15.0%
!!!	TGTAGAATTAATTGTTTTTT+GGG	-	chr3_1:26683215-26683234	Msa0354680:intron	15.0%
!!!	ATTATTGGTTTATGATAAAA+TGG	-	chr3_1:26683238-26683257	Msa0354680:intron	15.0%
!!!	TTATTGGTTTATGATAAAAT+GGG	-	chr3_1:26683239-26683258	Msa0354680:intron	15.0%
!!!	TAATTTTGAACTATGTTTAT+AGG	-	chr3_1:26683684-26683703	Msa0354680:intron	15.0%
!!	TAAATTAGTATTCAACTAAT+TGG	+	chr3_1:26683916-26683935	None:intergenic	15.0%
!!	AAATAAAATTACATCACAAA+TGG	+	chr3_1:26683984-26684003	None:intergenic	15.0%
!!!	GTAATTTTATTTGATTTGAA+TGG	-	chr3_1:26683992-26684011	Msa0354680:intron	15.0%
!!!	ATTTATTTTTGTGAATTTTG+TGG	-	chr3_1:26682910-26682929	Msa0354680:intron	15.0%
!!!	TGTAGAATTAATTGTTTTTT+GGG	-	chr3_1:26683215-26683234	Msa0354680:intron	15.0%
!!!	ATTATTGGTTTATGATAAAA+TGG	-	chr3_1:26683238-26683257	Msa0354680:intron	15.0%
!!!	TTATTGGTTTATGATAAAAT+GGG	-	chr3_1:26683239-26683258	Msa0354680:intron	15.0%
!!!	TAATTTTGAACTATGTTTAT+AGG	-	chr3_1:26683684-26683703	Msa0354680:intron	15.0%
!!	TAAATTAGTATTCAACTAAT+TGG	+	chr3_1:26683916-26683935	None:intergenic	15.0%
!!	AAATAAAATTACATCACAAA+TGG	+	chr3_1:26683984-26684003	None:intergenic	15.0%
!!!	GTAATTTTATTTGATTTGAA+TGG	-	chr3_1:26683992-26684011	Msa0354680:intron	15.0%
!!!	ATTTTATACCATGTAATTAG+CGG	+	chr3_1:26682823-26682842	None:intergenic	20.0%
!!!	CTGTAGAATTAATTGTTTTT+TGG	-	chr3_1:26683214-26683233	Msa0354680:intron	20.0%
!!!	TAATTGTTTTTTGGGATTAT+TGG	-	chr3_1:26683223-26683242	Msa0354680:intron	20.0%
!!	GTTATTTAGTATCTTTCAAA+TGG	-	chr3_1:26684063-26684082	Msa0354680:intron	20.0%
!!	AATATCAATTGTTAAATAGC+TGG	+	chr3_1:26684116-26684135	None:intergenic	20.0%
!!!	ATTTTATACCATGTAATTAG+CGG	+	chr3_1:26682823-26682842	None:intergenic	20.0%
!!!	CTGTAGAATTAATTGTTTTT+TGG	-	chr3_1:26683214-26683233	Msa0354680:intron	20.0%
!!!	TAATTGTTTTTTGGGATTAT+TGG	-	chr3_1:26683223-26683242	Msa0354680:intron	20.0%
!!	GTTATTTAGTATCTTTCAAA+TGG	-	chr3_1:26684063-26684082	Msa0354680:intron	20.0%
!!	AATATCAATTGTTAAATAGC+TGG	+	chr3_1:26684116-26684135	None:intergenic	20.0%
!	AAACGATGAACTAACTATAA+AGG	-	chr3_1:26682988-26683007	Msa0354680:intron	25.0%
!	ATTTCGTTCTTCTTATCTTT+GGG	-	chr3_1:26683188-26683207	Msa0354680:intron	25.0%
!!!	AATGGGTCATTTTTATTTGA+TGG	-	chr3_1:26683256-26683275	Msa0354680:intron	25.0%
!!	TTTTTCACTCCAATATCAAA+CGG	+	chr3_1:26683300-26683319	None:intergenic	25.0%
!	TTTGATATTGGAGTGAAAAA+AGG	-	chr3_1:26683300-26683319	Msa0354680:intron	25.0%
!	AATAATGCAATTGTTCAAAC+AGG	+	chr3_1:26684149-26684168	None:intergenic	25.0%
!!!	TTTGTTTTTTTGCGGTTTTA+GGG	-	chr3_1:26684341-26684360	Msa0354680:intron	25.0%
!	AAACGATGAACTAACTATAA+AGG	-	chr3_1:26682988-26683007	Msa0354680:intron	25.0%
!	ATTTCGTTCTTCTTATCTTT+GGG	-	chr3_1:26683188-26683207	Msa0354680:intron	25.0%
!!!	AATGGGTCATTTTTATTTGA+TGG	-	chr3_1:26683256-26683275	Msa0354680:intron	25.0%
!!	TTTTTCACTCCAATATCAAA+CGG	+	chr3_1:26683300-26683319	None:intergenic	25.0%
!	TTTGATATTGGAGTGAAAAA+AGG	-	chr3_1:26683300-26683319	Msa0354680:intron	25.0%
!	AATAATGCAATTGTTCAAAC+AGG	+	chr3_1:26684149-26684168	None:intergenic	25.0%
!!!	TTTGTTTTTTTGCGGTTTTA+GGG	-	chr3_1:26684341-26684360	Msa0354680:intron	25.0%
	TTTAAGTATGACAGTGTTCA+CGG	-	chr3_1:26682956-26682975	Msa0354680:intron	30.0%
	ATTATACATGTGTGCAAAGA+CGG	+	chr3_1:26683050-26683069	None:intergenic	30.0%
	GATTTCGTTCTTCTTATCTT+TGG	-	chr3_1:26683187-26683206	Msa0354680:intron	30.0%
!	TTTTCACTCCAATATCAAAC+GGG	+	chr3_1:26683299-26683318	None:intergenic	30.0%
!!	AAAGTTTGAAGCCATGATTT+TGG	-	chr3_1:26683324-26683343	Msa0354680:intron	30.0%
!	TGCTCAACTTTGTTTCAATA+TGG	-	chr3_1:26683435-26683454	Msa0354680:intron	30.0%
	TTCTATGTCTGTTAGTGTAT+AGG	-	chr3_1:26683468-26683487	Msa0354680:intron	30.0%
	TCTATGTCTGTTAGTGTATA+GGG	-	chr3_1:26683469-26683488	Msa0354680:intron	30.0%
	AAGTTTAGATGGAAGTTTGA+TGG	-	chr3_1:26683568-26683587	Msa0354680:intron	30.0%
	AGTTTAGATGGAAGTTTGAT+GGG	-	chr3_1:26683569-26683588	Msa0354680:intron	30.0%
	GAACTATGTTTATAGGAACT+TGG	-	chr3_1:26683691-26683710	Msa0354680:intron	30.0%
	TTAGATGATTATATGAGAGC+AGG	-	chr3_1:26683880-26683899	Msa0354680:intron	30.0%
	TAGATGATTATATGAGAGCA+GGG	-	chr3_1:26683881-26683900	Msa0354680:intron	30.0%
	AAATGGAAAATATTCAGCAC+TGG	+	chr3_1:26683967-26683986	None:intergenic	30.0%
!	AATGGACTTCTTTATCAGTA+TGG	-	chr3_1:26684081-26684100	Msa0354680:intron	30.0%
	ATGGACTTCTTTATCAGTAT+GGG	-	chr3_1:26684082-26684101	Msa0354680:intron	30.0%
!!!	CAACGTGTTTGTTTTATGAA+TGG	-	chr3_1:26684260-26684279	Msa0354680:CDS	30.0%
!!!	GTTTGTTTTTTTGCGGTTTT+AGG	-	chr3_1:26684340-26684359	Msa0354680:intron	30.0%
	TTTAAGTATGACAGTGTTCA+CGG	-	chr3_1:26682956-26682975	Msa0354680:intron	30.0%
	ATTATACATGTGTGCAAAGA+CGG	+	chr3_1:26683050-26683069	None:intergenic	30.0%
	GATTTCGTTCTTCTTATCTT+TGG	-	chr3_1:26683187-26683206	Msa0354680:intron	30.0%
!	TTTTCACTCCAATATCAAAC+GGG	+	chr3_1:26683299-26683318	None:intergenic	30.0%
!!	AAAGTTTGAAGCCATGATTT+TGG	-	chr3_1:26683324-26683343	Msa0354680:intron	30.0%
!	TGCTCAACTTTGTTTCAATA+TGG	-	chr3_1:26683435-26683454	Msa0354680:intron	30.0%
	TTCTATGTCTGTTAGTGTAT+AGG	-	chr3_1:26683468-26683487	Msa0354680:intron	30.0%
	TCTATGTCTGTTAGTGTATA+GGG	-	chr3_1:26683469-26683488	Msa0354680:intron	30.0%
	AAGTTTAGATGGAAGTTTGA+TGG	-	chr3_1:26683568-26683587	Msa0354680:intron	30.0%
	AGTTTAGATGGAAGTTTGAT+GGG	-	chr3_1:26683569-26683588	Msa0354680:intron	30.0%
	GAACTATGTTTATAGGAACT+TGG	-	chr3_1:26683691-26683710	Msa0354680:intron	30.0%
	TTAGATGATTATATGAGAGC+AGG	-	chr3_1:26683880-26683899	Msa0354680:intron	30.0%
	TAGATGATTATATGAGAGCA+GGG	-	chr3_1:26683881-26683900	Msa0354680:intron	30.0%
	AAATGGAAAATATTCAGCAC+TGG	+	chr3_1:26683967-26683986	None:intergenic	30.0%
!	AATGGACTTCTTTATCAGTA+TGG	-	chr3_1:26684081-26684100	Msa0354680:intron	30.0%
	ATGGACTTCTTTATCAGTAT+GGG	-	chr3_1:26684082-26684101	Msa0354680:intron	30.0%
!!!	CAACGTGTTTGTTTTATGAA+TGG	-	chr3_1:26684260-26684279	Msa0354680:CDS	30.0%
!!!	GTTTGTTTTTTTGCGGTTTT+AGG	-	chr3_1:26684340-26684359	Msa0354680:intron	30.0%
	ATGTAATTAGCGGTGATGAA+AGG	+	chr3_1:26682813-26682832	None:intergenic	35.0%
	TTTCATCACCGCTAATTACA+TGG	-	chr3_1:26682812-26682831	Msa0354680:intron	35.0%
	TTTCACTCCAATATCAAACG+GGG	+	chr3_1:26683298-26683317	None:intergenic	35.0%
!	TCTGGTGTAATGTTTTCATG+AGG	-	chr3_1:26683398-26683417	Msa0354680:intron	35.0%
!!	TCCATCTAAACTTTGAAGCA+GGG	+	chr3_1:26683561-26683580	None:intergenic	35.0%
!!	TTCCATCTAAACTTTGAAGC+AGG	+	chr3_1:26683562-26683581	None:intergenic	35.0%
	CATTTGATTCACACACTAGT+TGG	+	chr3_1:26683634-26683653	None:intergenic	35.0%
	CAACTAGTGTGTGAATCAAA+TGG	-	chr3_1:26683632-26683651	Msa0354680:intron	35.0%
	ATCAAAGACTATAAGAGCCA+AGG	-	chr3_1:26683753-26683772	Msa0354680:intron	35.0%
	AGATGATTATATGAGAGCAG+GGG	-	chr3_1:26683882-26683901	Msa0354680:intron	35.0%
	GCTAATAAGACCTGCTAATA+AGG	-	chr3_1:26684198-26684217	Msa0354680:intron	35.0%
!!!	GTTTGTTTTATGAATGGTGC+TGG	-	chr3_1:26684266-26684285	Msa0354680:CDS	35.0%
	ATGTAATTAGCGGTGATGAA+AGG	+	chr3_1:26682813-26682832	None:intergenic	35.0%
	TTTCATCACCGCTAATTACA+TGG	-	chr3_1:26682812-26682831	Msa0354680:intron	35.0%
	TTTCACTCCAATATCAAACG+GGG	+	chr3_1:26683298-26683317	None:intergenic	35.0%
!	TCTGGTGTAATGTTTTCATG+AGG	-	chr3_1:26683398-26683417	Msa0354680:intron	35.0%
!!	TCCATCTAAACTTTGAAGCA+GGG	+	chr3_1:26683561-26683580	None:intergenic	35.0%
!!	TTCCATCTAAACTTTGAAGC+AGG	+	chr3_1:26683562-26683581	None:intergenic	35.0%
	CATTTGATTCACACACTAGT+TGG	+	chr3_1:26683634-26683653	None:intergenic	35.0%
	CAACTAGTGTGTGAATCAAA+TGG	-	chr3_1:26683632-26683651	Msa0354680:intron	35.0%
	ATCAAAGACTATAAGAGCCA+AGG	-	chr3_1:26683753-26683772	Msa0354680:intron	35.0%
	AGATGATTATATGAGAGCAG+GGG	-	chr3_1:26683882-26683901	Msa0354680:intron	35.0%
	GCTAATAAGACCTGCTAATA+AGG	-	chr3_1:26684198-26684217	Msa0354680:intron	35.0%
!!!	GTTTGTTTTATGAATGGTGC+TGG	-	chr3_1:26684266-26684285	Msa0354680:CDS	35.0%
	ATGTGTGCAAAGACGGTAAT+TGG	+	chr3_1:26683043-26683062	None:intergenic	40.0%
	GATCAATCCCCGTTTGATAT+TGG	-	chr3_1:26683288-26683307	Msa0354680:intron	40.0%
!!	GTTTGAAGCCATGATTTTGG+TGG	-	chr3_1:26683327-26683346	Msa0354680:intron	40.0%
	GGCTTGAGATAGATAGACAA+TGG	+	chr3_1:26683355-26683374	None:intergenic	40.0%
	TGAGAGTAGAACACGAATCA+TGG	+	chr3_1:26683376-26683395	None:intergenic	40.0%
	ACCCTGCTTCAAAGTTTAGA+TGG	-	chr3_1:26683557-26683576	Msa0354680:intron	40.0%
	TAGGAACTTGGATCAACTTG+AGG	-	chr3_1:26683703-26683722	Msa0354680:intron	40.0%
!!	AATGGATTGTGAAGATGCCT+TGG	+	chr3_1:26683773-26683792	None:intergenic	40.0%
	TGATAACCTAGTTGCAGCAA+TGG	+	chr3_1:26683791-26683810	None:intergenic	40.0%
	TTGTTAAATAGCTGGCGACA+TGG	+	chr3_1:26684108-26684127	None:intergenic	40.0%
	CAAGACAACACCTTATTAGC+AGG	+	chr3_1:26684211-26684230	None:intergenic	40.0%
!!	CTGCTAATAAGGTGTTGTCT+TGG	-	chr3_1:26684209-26684228	Msa0354680:CDS	40.0%
!!	ATAAGGTGTTGTCTTGGCAA+TGG	-	chr3_1:26684215-26684234	Msa0354680:CDS	40.0%
!!	TTTTGTCTTGGTGGTTGATC+CGG	-	chr3_1:26684298-26684317	Msa0354680:intron	40.0%
!!!	GGGTGGTGTTTGTTTTTTTG+CGG	-	chr3_1:26684333-26684352	Msa0354680:intron	40.0%
!!!	CTCTGTTTCTGGTTTTTGTG+TGG	-	chr3_1:26684376-26684395	Msa0354680:intron	40.0%
!!	TCAGCACCGTTTTTGTTGTA+GGG	-	chr3_1:26684417-26684436	Msa0354680:intron	40.0%
!	TGTCCTACAACAGTGGTTTT+GGG	-	chr3_1:26684512-26684531	Msa0354680:CDS	40.0%
	ATGTGTGCAAAGACGGTAAT+TGG	+	chr3_1:26683043-26683062	None:intergenic	40.0%
	GATCAATCCCCGTTTGATAT+TGG	-	chr3_1:26683288-26683307	Msa0354680:intron	40.0%
!!	GTTTGAAGCCATGATTTTGG+TGG	-	chr3_1:26683327-26683346	Msa0354680:intron	40.0%
	GGCTTGAGATAGATAGACAA+TGG	+	chr3_1:26683355-26683374	None:intergenic	40.0%
	TGAGAGTAGAACACGAATCA+TGG	+	chr3_1:26683376-26683395	None:intergenic	40.0%
	ACCCTGCTTCAAAGTTTAGA+TGG	-	chr3_1:26683557-26683576	Msa0354680:intron	40.0%
	TAGGAACTTGGATCAACTTG+AGG	-	chr3_1:26683703-26683722	Msa0354680:intron	40.0%
!!	AATGGATTGTGAAGATGCCT+TGG	+	chr3_1:26683773-26683792	None:intergenic	40.0%
	TGATAACCTAGTTGCAGCAA+TGG	+	chr3_1:26683791-26683810	None:intergenic	40.0%
	TTGTTAAATAGCTGGCGACA+TGG	+	chr3_1:26684108-26684127	None:intergenic	40.0%
	CAAGACAACACCTTATTAGC+AGG	+	chr3_1:26684211-26684230	None:intergenic	40.0%
!!	CTGCTAATAAGGTGTTGTCT+TGG	-	chr3_1:26684209-26684228	Msa0354680:CDS	40.0%
!!	ATAAGGTGTTGTCTTGGCAA+TGG	-	chr3_1:26684215-26684234	Msa0354680:CDS	40.0%
!!	TTTTGTCTTGGTGGTTGATC+CGG	-	chr3_1:26684298-26684317	Msa0354680:intron	40.0%
!!!	GGGTGGTGTTTGTTTTTTTG+CGG	-	chr3_1:26684333-26684352	Msa0354680:intron	40.0%
!!!	CTCTGTTTCTGGTTTTTGTG+TGG	-	chr3_1:26684376-26684395	Msa0354680:intron	40.0%
!!	TCAGCACCGTTTTTGTTGTA+GGG	-	chr3_1:26684417-26684436	Msa0354680:intron	40.0%
!	TGTCCTACAACAGTGGTTTT+GGG	-	chr3_1:26684512-26684531	Msa0354680:CDS	40.0%
	ATGACAGTGTTCACGGACAA+TGG	-	chr3_1:26682963-26682982	Msa0354680:intron	45.0%
	TGGCTTCTCATCGAAGAGAA+GGG	+	chr3_1:26683023-26683042	None:intergenic	45.0%
	TTGGCTTCTCATCGAAGAGA+AGG	+	chr3_1:26683024-26683043	None:intergenic	45.0%
	CAATGGCACCACCAAAATCA+TGG	+	chr3_1:26683338-26683357	None:intergenic	45.0%
	TCGTGTTCTACTCTCAAGTC+TGG	-	chr3_1:26683380-26683399	Msa0354680:intron	45.0%
	TGTCTGTTAGTGTATAGGGC+TGG	-	chr3_1:26683473-26683492	Msa0354680:intron	45.0%
!	GGGCTGGAATTGTGTTTTCT+TGG	-	chr3_1:26683489-26683508	Msa0354680:intron	45.0%
!	TAGATGGAAGTTTGATGGGC+TGG	-	chr3_1:26683573-26683592	Msa0354680:intron	45.0%
!!	AGATGGAAGTTTGATGGGCT+GGG	-	chr3_1:26683574-26683593	Msa0354680:intron	45.0%
	CACAATCCATTGCTGCAACT+AGG	-	chr3_1:26683782-26683801	Msa0354680:intron	45.0%
!	TGGAATCCGCGTTTTTGTCT+TGG	-	chr3_1:26684286-26684305	Msa0354680:CDS	45.0%
!	AATCCGCGTTTTTGTCTTGG+TGG	-	chr3_1:26684289-26684308	Msa0354680:CDS	45.0%
	CAACCACCAAGACAAAAACG+CGG	+	chr3_1:26684295-26684314	None:intergenic	45.0%
	TTGATCCGGATGGACAAGTT+TGG	-	chr3_1:26684312-26684331	Msa0354680:intron	45.0%
	TGATCCGGATGGACAAGTTT+GGG	-	chr3_1:26684313-26684332	Msa0354680:intron	45.0%
!!!	TCTGGTTTTTGTGTGGTTGC+AGG	-	chr3_1:26684383-26684402	Msa0354680:intron	45.0%
!!	CTGGTTTTTGTGTGGTTGCA+GGG	-	chr3_1:26684384-26684403	Msa0354680:intron	45.0%
!	TGGTTTTTGTGTGGTTGCAG+GGG	-	chr3_1:26684385-26684404	Msa0354680:intron	45.0%
!!	GTCAGCACCGTTTTTGTTGT+AGG	-	chr3_1:26684416-26684435	Msa0354680:intron	45.0%
!!	CAGCACCGTTTTTGTTGTAG+GGG	-	chr3_1:26684418-26684437	Msa0354680:intron	45.0%
!!	AGCACCGTTTTTGTTGTAGG+GGG	-	chr3_1:26684419-26684438	Msa0354680:intron	45.0%
	AGGTCCCCCTACAACAAAAA+CGG	+	chr3_1:26684426-26684445	None:intergenic	45.0%
!!	GTTTTGCTGTCCTACAACAG+TGG	-	chr3_1:26684505-26684524	Msa0354680:CDS	45.0%
!	CTGTCCTACAACAGTGGTTT+TGG	-	chr3_1:26684511-26684530	Msa0354680:CDS	45.0%
!!	GTCCTACAACAGTGGTTTTG+GGG	-	chr3_1:26684513-26684532	Msa0354680:CDS	45.0%
	ATGACAGTGTTCACGGACAA+TGG	-	chr3_1:26682963-26682982	Msa0354680:intron	45.0%
	TGGCTTCTCATCGAAGAGAA+GGG	+	chr3_1:26683023-26683042	None:intergenic	45.0%
	TTGGCTTCTCATCGAAGAGA+AGG	+	chr3_1:26683024-26683043	None:intergenic	45.0%
	CAATGGCACCACCAAAATCA+TGG	+	chr3_1:26683338-26683357	None:intergenic	45.0%
	TCGTGTTCTACTCTCAAGTC+TGG	-	chr3_1:26683380-26683399	Msa0354680:intron	45.0%
	TGTCTGTTAGTGTATAGGGC+TGG	-	chr3_1:26683473-26683492	Msa0354680:intron	45.0%
!	GGGCTGGAATTGTGTTTTCT+TGG	-	chr3_1:26683489-26683508	Msa0354680:intron	45.0%
!	TAGATGGAAGTTTGATGGGC+TGG	-	chr3_1:26683573-26683592	Msa0354680:intron	45.0%
!!	AGATGGAAGTTTGATGGGCT+GGG	-	chr3_1:26683574-26683593	Msa0354680:intron	45.0%
	CACAATCCATTGCTGCAACT+AGG	-	chr3_1:26683782-26683801	Msa0354680:intron	45.0%
!	TGGAATCCGCGTTTTTGTCT+TGG	-	chr3_1:26684286-26684305	Msa0354680:CDS	45.0%
!	AATCCGCGTTTTTGTCTTGG+TGG	-	chr3_1:26684289-26684308	Msa0354680:CDS	45.0%
	CAACCACCAAGACAAAAACG+CGG	+	chr3_1:26684295-26684314	None:intergenic	45.0%
	TTGATCCGGATGGACAAGTT+TGG	-	chr3_1:26684312-26684331	Msa0354680:intron	45.0%
	TGATCCGGATGGACAAGTTT+GGG	-	chr3_1:26684313-26684332	Msa0354680:intron	45.0%
!!!	TCTGGTTTTTGTGTGGTTGC+AGG	-	chr3_1:26684383-26684402	Msa0354680:intron	45.0%
!!	CTGGTTTTTGTGTGGTTGCA+GGG	-	chr3_1:26684384-26684403	Msa0354680:intron	45.0%
!	TGGTTTTTGTGTGGTTGCAG+GGG	-	chr3_1:26684385-26684404	Msa0354680:intron	45.0%
!!	GTCAGCACCGTTTTTGTTGT+AGG	-	chr3_1:26684416-26684435	Msa0354680:intron	45.0%
!!	CAGCACCGTTTTTGTTGTAG+GGG	-	chr3_1:26684418-26684437	Msa0354680:intron	45.0%
!!	AGCACCGTTTTTGTTGTAGG+GGG	-	chr3_1:26684419-26684438	Msa0354680:intron	45.0%
	AGGTCCCCCTACAACAAAAA+CGG	+	chr3_1:26684426-26684445	None:intergenic	45.0%
!!	GTTTTGCTGTCCTACAACAG+TGG	-	chr3_1:26684505-26684524	Msa0354680:CDS	45.0%
!	CTGTCCTACAACAGTGGTTT+TGG	-	chr3_1:26684511-26684530	Msa0354680:CDS	45.0%
!!	GTCCTACAACAGTGGTTTTG+GGG	-	chr3_1:26684513-26684532	Msa0354680:CDS	45.0%
	CTGACGGGAGTTGGAAGAAT+CGG	-	chr3_1:26682720-26682739	Msa0354680:CDS	50.0%
	GGAGTTGGAAGAATCGGACT+CGG	-	chr3_1:26682726-26682745	Msa0354680:CDS	50.0%
	AAGAATCGGACTCGGACGTT+TGG	-	chr3_1:26682734-26682753	Msa0354680:CDS	50.0%
	ACCACCCAAACTTGTCCATC+CGG	+	chr3_1:26684320-26684339	None:intergenic	50.0%
!	TTTTGTGTGGTTGCAGGGGT+TGG	-	chr3_1:26684389-26684408	Msa0354680:intron	50.0%
	CAACATCACCTTCCTGCACA+AGG	+	chr3_1:26684466-26684485	None:intergenic	50.0%
	AGCCCCAAAACCACTGTTGT+AGG	+	chr3_1:26684518-26684537	None:intergenic	50.0%
	CTGACGGGAGTTGGAAGAAT+CGG	-	chr3_1:26682720-26682739	Msa0354680:CDS	50.0%
	GGAGTTGGAAGAATCGGACT+CGG	-	chr3_1:26682726-26682745	Msa0354680:CDS	50.0%
	AAGAATCGGACTCGGACGTT+TGG	-	chr3_1:26682734-26682753	Msa0354680:CDS	50.0%
	ACCACCCAAACTTGTCCATC+CGG	+	chr3_1:26684320-26684339	None:intergenic	50.0%
!	TTTTGTGTGGTTGCAGGGGT+TGG	-	chr3_1:26684389-26684408	Msa0354680:intron	50.0%
	CAACATCACCTTCCTGCACA+AGG	+	chr3_1:26684466-26684485	None:intergenic	50.0%
	AGCCCCAAAACCACTGTTGT+AGG	+	chr3_1:26684518-26684537	None:intergenic	50.0%
!	GTCTTGGTGGTTGATCCGGA+TGG	-	chr3_1:26684302-26684321	Msa0354680:intron	55.0%
	TCCGGATGGACAAGTTTGGG+TGG	-	chr3_1:26684316-26684335	Msa0354680:intron	55.0%
	GCGTCTGCTGTCTCTGTTTC+TGG	-	chr3_1:26684365-26684384	Msa0354680:intron	55.0%
	GCTGTGTTCCTTGTGCAGGA+AGG	-	chr3_1:26684455-26684474	Msa0354680:CDS	55.0%
	CGATTCTTCCAACTCCCGTC+AGG	+	chr3_1:26682722-26682741	None:intergenic	55.0%
!	GTCTTGGTGGTTGATCCGGA+TGG	-	chr3_1:26684302-26684321	Msa0354680:intron	55.0%
	TCCGGATGGACAAGTTTGGG+TGG	-	chr3_1:26684316-26684335	Msa0354680:intron	55.0%
	GCGTCTGCTGTCTCTGTTTC+TGG	-	chr3_1:26684365-26684384	Msa0354680:intron	55.0%
	GCTGTGTTCCTTGTGCAGGA+AGG	-	chr3_1:26684455-26684474	Msa0354680:CDS	55.0%
	TGTAGGGGGACCTCTAGCTG+CGG	-	chr3_1:26684433-26684452	Msa0354680:CDS	60.0%
	AGGAACACAGCCGCAGCTAG+AGG	+	chr3_1:26684446-26684465	None:intergenic	60.0%
	TGCGGCTGTGTTCCTTGTGC+AGG	-	chr3_1:26684451-26684470	Msa0354680:CDS	60.0%
	TGTAGGGGGACCTCTAGCTG+CGG	-	chr3_1:26684433-26684452	Msa0354680:CDS	60.0%
	AGGAACACAGCCGCAGCTAG+AGG	+	chr3_1:26684446-26684465	None:intergenic	60.0%
	TGCGGCTGTGTTCCTTGTGC+AGG	-	chr3_1:26684451-26684470	Msa0354680:CDS	60.0%

Chromosome	Type	Strat	End	Strand	Name
chr3_1	gene	26682720	26684541	26682720	ID=Msa0354680;Name=Msa0354680
chr3_1	mRNA	26682720	26684541	26682720	ID=Msa0354680-mRNA-1;Parent=Msa0354680;Name=Msa0354680-mRNA-1;_AED=0.24;_eAED=0.24;_QI=0\|0.66\|0.25\|0.75\|1\|0.75\|4\|0\|106
chr3_1	exon	26684428	26684541	26684428	ID=Msa0354680-mRNA-1:exon:5838;Parent=Msa0354680-mRNA-1
chr3_1	exon	26684199	26684314	26684199	ID=Msa0354680-mRNA-1:exon:5837;Parent=Msa0354680-mRNA-1
chr3_1	exon	26683537	26683555	26683537	ID=Msa0354680-mRNA-1:exon:5836;Parent=Msa0354680-mRNA-1
chr3_1	exon	26682720	26682788	26682720	ID=Msa0354680-mRNA-1:exon:5835;Parent=Msa0354680-mRNA-1
chr3_1	CDS	26684428	26684541	26684428	ID=Msa0354680-mRNA-1:cds;Parent=Msa0354680-mRNA-1
chr3_1	CDS	26684199	26684314	26684199	ID=Msa0354680-mRNA-1:cds;Parent=Msa0354680-mRNA-1
chr3_1	CDS	26683537	26683555	26683537	ID=Msa0354680-mRNA-1:cds;Parent=Msa0354680-mRNA-1
chr3_1	CDS	26682720	26682788	26682720	ID=Msa0354680-mRNA-1:cds;Parent=Msa0354680-mRNA-1

Gene Sequence	>Msa0354680 CTGACGGGAGTTGGAAGAATCGGACTCGGACGTTTGGTTGCTAGATTTGCTTTGAAGAGAGATGATGTTGAACTTGTTGCTGTTAACGATCCTTTCATCACCGCTAATTACATGACATACATGTTTAAGTATGACAGTGTTCACGGACAATGGAAAAACGATGAACTAACTATAAAGGACTCTAAAACCCTTCTCTTCGATGAGAAGCCAATTACCGTCTTTGCACACATGAACTTGGATCAACTTGAGGAAGGTGATGTTGCTGCTTTGACAGCAGTTCTGTTTTGCTGTCCTACAACAGTGGTTTTGGGGCTGTTC
Protein sequence	>Msa0354680 LTGVGRIGLGRLVARFALKRDDVELVAVNDPFITANYMTYMFKYDSVHGQWKNDELTIKDSKTLLFDEKPITVFAHMNLDQLEEGDVAALTAVLFCCPTTVVLGLF