AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0626450


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0626450 MtrunA17_Chr4g0002361 99.045 419 4 0 1 419 1 419 0.0 857
Msa0626450 MtrunA17_Chr2g0298881 52.247 356 167 3 65 419 13 366 1.12e-137 398
Msa0626450 MtrunA17_Chr5g0399311 28.739 341 197 12 84 389 122 451 3.95e-27 113
Msa0626450 MtrunA17_Chr3g0143821 27.714 350 201 11 78 389 103 438 8.58e-27 112
Msa0626450 MtrunA17_Chr5g0424241 27.011 348 204 9 87 389 158 500 3.53e-26 110
Msa0626450 MtrunA17_Chr4g0042711 26.023 342 203 12 86 388 97 427 1.66e-24 105
Msa0626450 MtrunA17_Chr5g0417871 27.190 331 192 14 86 378 85 404 1.67e-24 105
Msa0626450 MtrunA17_Chr4g0056061 27.729 339 199 12 86 389 108 435 1.68e-24 105
Msa0626450 MtrunA17_Chr3g0129981 27.548 363 195 15 63 378 89 430 2.71e-24 105
Msa0626450 MtrunA17_Chr3g0132951 25.469 373 207 13 72 378 85 452 5.28e-24 103
Msa0626450 MtrunA17_Chr4g0061781 26.050 357 212 15 71 387 103 447 9.04e-24 103
Msa0626450 MtrunA17_Chr5g0426591 25.442 452 248 19 5 389 12 441 1.04e-23 103
Msa0626450 MtrunA17_Chr1g0160781 23.575 386 237 11 63 396 125 504 1.55e-23 102
Msa0626450 MtrunA17_Chr2g0307971 25.356 351 200 14 83 387 112 446 7.24e-22 97.8
Msa0626450 MtrunA17_Chr3g0123521 23.002 413 257 13 48 407 104 508 1.21e-21 97.1
Msa0626450 MtrunA17_Chr3g0087291 25.272 368 206 15 72 389 153 501 4.25e-21 95.5
Msa0626450 MtrunA17_Chr5g0412251 24.444 360 202 12 84 378 84 438 4.46e-21 95.1
Msa0626450 MtrunA17_Chr4g0003561 25.434 346 222 9 70 387 56 393 3.75e-20 92.0
Msa0626450 MtrunA17_Chr4g0043911 23.580 352 220 8 70 378 135 480 6.32e-20 92.0
Msa0626450 MtrunA17_Chr3g0077321 24.576 354 216 10 70 378 130 477 6.33e-20 92.0
Msa0626450 MtrunA17_Chr4g0010511 24.259 371 225 12 63 389 203 561 2.32e-19 90.5
Msa0626450 MtrunA17_Chr3g0132371 24.185 368 215 14 63 384 116 465 3.23e-19 89.7
Msa0626450 MtrunA17_Chr1g0204121 22.449 392 238 16 63 402 62 439 1.69e-17 84.3
Msa0626450 MtrunA17_Chr7g0220381 25.271 277 144 8 81 306 93 357 6.50e-16 80.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0626450 AT3G21190.1 63.208 424 149 3 1 419 1 422 0.0 561
Msa0626450 AT1G51630.1 61.882 425 154 4 1 419 1 423 0.0 553
Msa0626450 AT1G38065.2 26.648 349 206 9 86 389 26 369 1.63e-27 114
Msa0626450 AT1G38065.1 26.648 349 206 9 86 389 36 379 1.88e-27 114
Msa0626450 AT1G38131.1 26.648 349 206 9 86 389 155 498 3.47e-27 114
Msa0626450 AT5G64600.1 27.586 406 231 14 26 389 60 444 7.49e-27 112
Msa0626450 AT1G20550.1 27.520 367 215 13 78 411 101 449 2.55e-25 108
Msa0626450 AT1G76270.1 28.529 340 200 12 83 389 103 432 7.38e-25 107
Msa0626450 AT4G38390.1 26.239 343 210 10 81 389 118 451 3.65e-23 102
Msa0626450 AT4G16650.2 28.446 341 198 11 84 389 120 449 5.33e-22 98.6
Msa0626450 AT4G16650.1 28.446 341 198 11 84 389 120 449 5.33e-22 98.6
Msa0626450 AT3G26370.1 23.430 414 256 12 48 408 112 517 8.42e-22 98.2
Msa0626450 AT3G02250.1 25.287 348 198 14 83 384 103 434 1.72e-20 94.0
Msa0626450 AT5G65470.1 23.177 384 223 13 63 378 60 439 3.04e-20 93.2
Msa0626450 AT1G35510.1 24.791 359 221 9 64 378 136 489 6.93e-20 92.4
Msa0626450 AT5G15740.1 24.629 337 206 13 87 384 107 434 8.31e-20 92.0
Msa0626450 AT2G03280.1 25.000 340 208 12 86 387 88 418 1.02e-19 91.7
Msa0626450 AT1G04910.1 24.074 378 229 14 75 413 81 439 1.53e-19 91.3
Msa0626450 AT5G63390.1 23.775 408 236 16 63 412 134 524 4.31e-19 90.1
Msa0626450 AT2G01480.2 21.564 422 274 10 8 378 69 484 5.62e-17 83.2
Msa0626450 AT2G01480.1 21.564 422 274 10 8 378 69 484 1.10e-16 82.4
Msa0626450 AT1G14970.1 22.198 464 296 14 8 412 70 527 3.41e-16 80.9
Msa0626450 AT1G14970.2 23.077 403 251 12 63 412 11 407 4.14e-16 80.5
Msa0626450 AT2G03280.2 23.433 367 207 13 86 387 88 445 7.25e-16 79.7
Msa0626450 AT2G37980.1 23.097 381 245 15 45 389 185 553 2.76e-14 75.1
Msa0626450 AT3G26370.2 24.138 232 157 6 48 263 112 340 5.75e-14 73.6
Msa0626450 AT5G01100.1 21.467 368 233 12 63 389 191 543 1.60e-13 72.8

Find 110 sgRNAs with CRISPR-Local

Find 530 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CACAAGGCTATTCACATATT+TGG 0.137783 4_3:-6029087 Msa0626450:three_prime_UTR
GTTCCTCTAAAACAAGAAAA+TGG 0.179635 4_3:-6032769 Msa0626450:exon
ATATTTGGCTTGTAAAATTA+TGG 0.193967 4_3:-6029072 Msa0626450:three_prime_UTR
TTTCCCTTTGATCTATAAAT+TGG 0.210218 4_3:+6030278 None:intergenic
CTCATTAAGAACAAGAATTA+TGG 0.238157 4_3:+6029044 None:intergenic
GAAAGTCCAGGTAGGATATT+AGG 0.263198 4_3:-6032910 Msa0626450:five_prime_UTR
TTCTGGTAAAACACAAATAT+TGG 0.269941 4_3:-6029362 Msa0626450:CDS
CTTAGCAATGTATGGAAGTT+TGG 0.306231 4_3:-6030177 Msa0626450:CDS
ATTCAGAATCTTTAGAATCT+AGG 0.306927 4_3:+6029485 None:intergenic
TACAAGGATAATAAATTTCC+AGG 0.315137 4_3:-6031604 Msa0626450:intron
TAATCTTCGGTAACCCGGTT+AGG 0.354107 4_3:+6030320 None:intergenic
GACTTTCTCATGTTTATTGA+AGG 0.356575 4_3:+6030233 None:intergenic
TCGACAAGATCATGTATTTC+CGG 0.357773 4_3:+6030146 None:intergenic
ACACATGTAAGAAAGAATAT+AGG 0.360475 4_3:-6031538 Msa0626450:CDS
TTACTTGAACAGAATCAAAA+TGG 0.369726 4_3:+6032667 None:intergenic
CTGCTGTGAAGGTCCCTAAC+CGG 0.377281 4_3:-6030334 Msa0626450:CDS
ATGCGAACGTAGCTGGTAAA+AGG 0.377684 4_3:-6029390 Msa0626450:CDS
TCAATAAACATGAGAAAGTC+AGG 0.380362 4_3:-6030230 Msa0626450:CDS
CACATGTAAGAAAGAATATA+GGG 0.382191 4_3:-6031537 Msa0626450:CDS
TGATAGCCTTGATTCTCTTA+AGG 0.386325 4_3:-6029904 Msa0626450:CDS
CATCATTATCATCATTTCCT+TGG 0.387233 4_3:+6030027 None:intergenic
GTTGAGATGTTGAACAAGAA+AGG 0.397949 4_3:-6030053 Msa0626450:CDS
GAGAAAGATTGGTATTGATA+AGG 0.398684 4_3:-6029961 Msa0626450:CDS
AGATTCTAAAGATTCTGAAT+TGG 0.399183 4_3:-6029482 Msa0626450:CDS
GATACTGCATTCATTGACTT+TGG 0.403790 4_3:-6029011 Msa0626450:three_prime_UTR
TAAGAAAGAATATAGGGCTT+TGG 0.414895 4_3:-6031531 Msa0626450:CDS
ATTGCATGCTTAGCAATGTA+TGG 0.415033 4_3:-6030185 Msa0626450:CDS
AGATAAACATTCATCCCAAT+GGG 0.424741 4_3:-6028967 Msa0626450:three_prime_UTR
TTCCTCTAAAACAAGAAAAT+GGG 0.425792 4_3:-6032768 Msa0626450:exon
AATCTCTTGTGCATTGAAAC+AGG 0.427632 4_3:+6029995 None:intergenic
GATTTGAGACAAGTAGTTGC+TGG 0.437086 4_3:-6032741 Msa0626450:CDS
GGTTGGCTTCCTCTAATGTC+AGG 0.452126 4_3:+6030611 None:intergenic
TTGAATGGTTTACCTGAGAT+AGG 0.452979 4_3:+6031287 None:intergenic
CTATTGTATGCGAACGTAGC+TGG 0.454060 4_3:-6029397 Msa0626450:CDS
CCGTGTTGGGTTAAGCCGTC+TGG 0.456324 4_3:-6031484 Msa0626450:CDS
GCTGGTAAAAGGATCGGTTC+TGG 0.458320 4_3:-6029379 Msa0626450:CDS
TACACTAAGTCAACCCCATT+GGG 0.462494 4_3:+6028953 None:intergenic
CTTGTGATCCCTGACATTAG+AGG 0.462574 4_3:-6030620 Msa0626450:CDS
AGCCGATGAATCTGAAATTA+CGG 0.462609 4_3:+6029333 None:intergenic
TGGACCATTGGTTAATGAAA+AGG 0.468674 4_3:+6031318 None:intergenic
TACAATAGACCCGAAATTGC+TGG 0.469638 4_3:+6029412 None:intergenic
CAATTTATTTGACACAATCA+AGG 0.470225 4_3:-6029932 Msa0626450:CDS
AACTTTGTCTTCTTATCCGC+CGG 0.478466 4_3:+6029508 None:intergenic
TGACGAGTTAAAACCGTGTT+GGG 0.478923 4_3:-6031497 Msa0626450:CDS
CGAACCAATTTATAGATCAA+AGG 0.484845 4_3:-6030282 Msa0626450:CDS
GAACCAATTTATAGATCAAA+GGG 0.484926 4_3:-6030281 Msa0626450:CDS
GTTGCATCATCTGTTGATCC+TGG 0.495630 4_3:+6031586 None:intergenic
CTATGTAATCTTCGGTAACC+CGG 0.496129 4_3:+6030315 None:intergenic
ACATGATCTTGTCGACTCAA+TGG 0.503901 4_3:-6030138 Msa0626450:CDS
AGCCGTAATTTCAGATTCAT+CGG 0.504226 4_3:-6029335 Msa0626450:CDS
TAGATAAACATTCATCCCAA+TGG 0.504319 4_3:-6028968 Msa0626450:three_prime_UTR
GACATTAGAGGAAGCCAACC+TGG 0.505026 4_3:-6030608 Msa0626450:CDS
AATCTTCGGTAACCCGGTTA+GGG 0.507255 4_3:+6030321 None:intergenic
TTGAAACCCGTGCCTTGCAC+GGG 0.511045 4_3:-6028902 Msa0626450:three_prime_UTR
AGACGGTCAATTTATTGCTG+TGG 0.514073 4_3:-6030084 Msa0626450:CDS
TGGAAGTTTGGAGTTGCAGC+CGG 0.514488 4_3:-6030165 Msa0626450:CDS
TTTGAAACCCGTGCCTTGCA+CGG 0.516525 4_3:-6028903 Msa0626450:three_prime_UTR
AAAAGAAAAGAAGAAAGTCC+AGG 0.521014 4_3:-6032922 Msa0626450:five_prime_UTR
TTGTCGACTCAATGGTTGAA+AGG 0.530466 4_3:-6030130 Msa0626450:CDS
AACCTATGAAAATGTAAAGA+TGG 0.530585 4_3:-6031566 Msa0626450:CDS
GTAATTGTGGCTAGATATCT+CGG 0.530926 4_3:-6030650 Msa0626450:CDS
TTCATGTCTCAGGAACTTTG+AGG 0.534152 4_3:-6030450 Msa0626450:intron
AAAGAATATAGGGCTTTGGA+AGG 0.536631 4_3:-6031527 Msa0626450:CDS
TGCTGTGAAGGTCCCTAACC+GGG 0.540265 4_3:-6030333 Msa0626450:CDS
GTGTCGAGCTATGTAATCTT+CGG 0.540315 4_3:+6030307 None:intergenic
ATCTGCAAACAAAAGACCTT+AGG 0.545962 4_3:+6029186 None:intergenic
GATGAATCTGAAATTACGGC+TGG 0.551992 4_3:+6029337 None:intergenic
TCCAGAGTACCACCTATCTC+AGG 0.558813 4_3:-6031299 Msa0626450:intron
ATACACTAAGTCAACCCCAT+TGG 0.560052 4_3:+6028952 None:intergenic
ACCTGAGATAGGTGGTACTC+TGG 0.562659 4_3:+6031298 None:intergenic
CAAGGAAATGATGATAATGA+TGG 0.567082 4_3:-6030026 Msa0626450:CDS
TAGGTGGTACTCTGGACCAT+TGG 0.568629 4_3:+6031306 None:intergenic
ACAGGTCCTTAAGAGAATCA+AGG 0.568795 4_3:+6029898 None:intergenic
GATAGCAGATGCAGTAATTG+TGG 0.569998 4_3:-6030663 Msa0626450:CDS
CTGACGAGTTAAAACCGTGT+TGG 0.574512 4_3:-6031498 Msa0626450:CDS
TTATTTGACACAATCAAGGT+GGG 0.575583 4_3:-6029928 Msa0626450:CDS
GACGAAGTGGAGCAGACAGA+CGG 0.578720 4_3:-6031349 Msa0626450:CDS
GTTGGCTTCCTCTAATGTCA+GGG 0.580467 4_3:+6030612 None:intergenic
ACGAAGTGGAGCAGACAGAC+GGG 0.590735 4_3:-6031348 Msa0626450:CDS
AACGTAGCTGGTAAAAGGAT+CGG 0.594479 4_3:-6029385 Msa0626450:CDS
CATGAAAAGCATGGAAGGAG+TGG 0.595034 4_3:-6030405 Msa0626450:CDS
TCGATGGTTGGCAGACGAAG+TGG 0.598053 4_3:-6031362 Msa0626450:intron
GTGTTCATGAAAAGCATGGA+AGG 0.599368 4_3:-6030410 Msa0626450:CDS
GTTCTTCCTAATATCCTACC+TGG 0.600567 4_3:+6032904 None:intergenic
ATACATTGCTAAGCATGCAA+TGG 0.603322 4_3:+6030187 None:intergenic
AGAACTAACCTCTTGTCACC+AGG 0.607111 4_3:+6030590 None:intergenic
TTGAACAAGAAAGGTTGCCA+AGG 0.610391 4_3:-6030044 Msa0626450:CDS
CTAACCTCTTGTCACCAGGT+TGG 0.610952 4_3:+6030594 None:intergenic
AATTTAATATTACCTCCAGA+CGG 0.612585 4_3:+6031469 None:intergenic
ATAGATCAAAGGGAAACGTA+AGG 0.616496 4_3:-6030271 Msa0626450:CDS
TTTATTTGACACAATCAAGG+TGG 0.619794 4_3:-6029929 Msa0626450:CDS
ATTTAACATGTATGTACACA+AGG 0.622676 4_3:-6029103 Msa0626450:three_prime_UTR
GTTGCAGGAGTCAATCATGC+CGG 0.628375 4_3:-6029527 Msa0626450:intron
AAGAATATAGGGCTTTGGAA+GGG 0.632512 4_3:-6031526 Msa0626450:CDS
TAACAAACATAGTGAGAGTG+AGG 0.633154 4_3:+6032715 None:intergenic
GAAAAGAAGAAAGTCCAGGT+AGG 0.640973 4_3:-6032918 Msa0626450:five_prime_UTR
AATAACAAGAATATGCAAAG+TGG 0.644534 4_3:+6029269 None:intergenic
ATCATTGTCAGTGAAAGTGT+CGG 0.644659 4_3:-6032881 Msa0626450:five_prime_UTR
GAAGCCAACCTGGTGACAAG+AGG 0.647434 4_3:-6030598 Msa0626450:intron
CAATAAACATGAGAAAGTCA+GGG 0.649727 4_3:-6030229 Msa0626450:CDS
TGTTGGGTTAAGCCGTCTGG+AGG 0.656915 4_3:-6031481 Msa0626450:intron
CATGGAAGGAGTGGTCAAAG+TGG 0.657662 4_3:-6030396 Msa0626450:CDS
GTTTCCTAAAACTTACACGA+AGG 0.660480 4_3:-6029877 Msa0626450:intron
TGACGTGTTCATGAAAAGCA+TGG 0.665989 4_3:-6030414 Msa0626450:CDS
ACTTTAAGCCGAAAATCAGA+CGG 0.668948 4_3:-6030101 Msa0626450:CDS
AATGGTTTACCTGAGATAGG+TGG 0.671281 4_3:+6031290 None:intergenic
GCAGGAGTCAATCATGCCGG+CGG 0.677301 4_3:-6029524 Msa0626450:intron
TGATTGTGTCAAATAAATTG+TGG 0.680581 4_3:+6029935 None:intergenic
CCAGACGGCTTAACCCAACA+CGG 0.681147 4_3:+6031484 None:intergenic
GATAAACATTCATCCCAATG+GGG 0.743943 4_3:-6028966 Msa0626450:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATATTGACTTTTTATATAT+AGG - chr4_3:6029574-6029593 Msa0626450:intron 10.0%
!!! TATATTGACTTTTTATATAT+AGG - chr4_3:6029574-6029593 Msa0626450:intron 10.0%
!! TTTGGATAAAAATGAAAAAT+GGG + chr4_3:6029147-6029166 None:intergenic 15.0%
!!! AACAAAGTTAGTTAATTTTA+GGG - chr4_3:6029275-6029294 Msa0626450:CDS 15.0%
!!! AAATGAATTTTAACTTTCAA+AGG - chr4_3:6029332-6029351 Msa0626450:CDS 15.0%
!!! GTCAATTATTTGTTATATAT+AGG + chr4_3:6029528-6029547 None:intergenic 15.0%
!! CTTAGATTGATTAATATATT+CGG + chr4_3:6029964-6029983 None:intergenic 15.0%
!! AAGATAGATATTAGATAAAT+AGG - chr4_3:6029981-6030000 Msa0626450:CDS 15.0%
!! TTTGGATAAAAATGAAAAAT+GGG + chr4_3:6029147-6029166 None:intergenic 15.0%
!!! AACAAAGTTAGTTAATTTTA+GGG - chr4_3:6029275-6029294 Msa0626450:CDS 15.0%
!!! AAATGAATTTTAACTTTCAA+AGG - chr4_3:6029332-6029351 Msa0626450:CDS 15.0%
!!! GTCAATTATTTGTTATATAT+AGG + chr4_3:6029528-6029547 None:intergenic 15.0%
!! CTTAGATTGATTAATATATT+CGG + chr4_3:6029964-6029983 None:intergenic 15.0%
!! AAGATAGATATTAGATAAAT+AGG - chr4_3:6029981-6030000 Msa0626450:CDS 15.0%
!! CTTTGGATAAAAATGAAAAA+TGG + chr4_3:6029148-6029167 None:intergenic 20.0%
!! AAAGTGAAAAATTGAAACTT+TGG + chr4_3:6029165-6029184 None:intergenic 20.0%
!! TTTCTATATGAATCTCTTAA+AGG - chr4_3:6029195-6029214 Msa0626450:three_prime_UTR 20.0%
!! TTCTATATGAATCTCTTAAA+GGG - chr4_3:6029196-6029215 Msa0626450:three_prime_UTR 20.0%
!! CTTTGTTCATAACAAAAAAA+TGG + chr4_3:6029262-6029281 None:intergenic 20.0%
!!! GAACAAAGTTAGTTAATTTT+AGG - chr4_3:6029274-6029293 Msa0626450:CDS 20.0%
!!! ACAAAGTTAGTTAATTTTAG+GGG - chr4_3:6029276-6029295 Msa0626450:CDS 20.0%
!!! TTATTTGTTATATATAGGAC+TGG + chr4_3:6029523-6029542 None:intergenic 20.0%
!!! AACAACAATCTATTTTTATC+GGG + chr4_3:6029894-6029913 None:intergenic 20.0%
!!! GAACAACAATCTATTTTTAT+CGG + chr4_3:6029895-6029914 None:intergenic 20.0%
!! AAGACTAATAAAAACAAATC+CGG + chr4_3:6030100-6030119 None:intergenic 20.0%
!!! ATTAATTCATATTTTGTCGA+TGG - chr4_3:6030408-6030427 Msa0626450:CDS 20.0%
!!! CTTCAAGTTTATATCAATTT+TGG + chr4_3:6030714-6030733 None:intergenic 20.0%
!! TAATAGATTCATATTGAAGT+GGG + chr4_3:6030798-6030817 None:intergenic 20.0%
!! TTAATAGATTCATATTGAAG+TGG + chr4_3:6030799-6030818 None:intergenic 20.0%
!! AAATTGTGTTAAATGTAAAG+TGG + chr4_3:6030822-6030841 None:intergenic 20.0%
!! CTTTACATTTAACACAATTT+AGG - chr4_3:6030822-6030841 Msa0626450:intron 20.0%
!! AAAGTAGAGAAAATAAAGAA+TGG + chr4_3:6031049-6031068 None:intergenic 20.0%
!!! ATATTTGGCTTGTAAAATTA+TGG - chr4_3:6032714-6032733 Msa0626450:CDS 20.0%
!! CTTTGGATAAAAATGAAAAA+TGG + chr4_3:6029148-6029167 None:intergenic 20.0%
!! AAAGTGAAAAATTGAAACTT+TGG + chr4_3:6029165-6029184 None:intergenic 20.0%
!! TTTCTATATGAATCTCTTAA+AGG - chr4_3:6029195-6029214 Msa0626450:three_prime_UTR 20.0%
!! TTCTATATGAATCTCTTAAA+GGG - chr4_3:6029196-6029215 Msa0626450:three_prime_UTR 20.0%
!! CTTTGTTCATAACAAAAAAA+TGG + chr4_3:6029262-6029281 None:intergenic 20.0%
!!! GAACAAAGTTAGTTAATTTT+AGG - chr4_3:6029274-6029293 Msa0626450:CDS 20.0%
!!! ACAAAGTTAGTTAATTTTAG+GGG - chr4_3:6029276-6029295 Msa0626450:CDS 20.0%
!!! TTATTTGTTATATATAGGAC+TGG + chr4_3:6029523-6029542 None:intergenic 20.0%
!!! AACAACAATCTATTTTTATC+GGG + chr4_3:6029894-6029913 None:intergenic 20.0%
!!! GAACAACAATCTATTTTTAT+CGG + chr4_3:6029895-6029914 None:intergenic 20.0%
!! AAGACTAATAAAAACAAATC+CGG + chr4_3:6030100-6030119 None:intergenic 20.0%
!!! ATTAATTCATATTTTGTCGA+TGG - chr4_3:6030408-6030427 Msa0626450:CDS 20.0%
!!! CTTCAAGTTTATATCAATTT+TGG + chr4_3:6030714-6030733 None:intergenic 20.0%
!! TAATAGATTCATATTGAAGT+GGG + chr4_3:6030798-6030817 None:intergenic 20.0%
!! TTAATAGATTCATATTGAAG+TGG + chr4_3:6030799-6030818 None:intergenic 20.0%
!! AAATTGTGTTAAATGTAAAG+TGG + chr4_3:6030822-6030841 None:intergenic 20.0%
!! CTTTACATTTAACACAATTT+AGG - chr4_3:6030822-6030841 Msa0626450:intron 20.0%
!! AAAGTAGAGAAAATAAAGAA+TGG + chr4_3:6031049-6031068 None:intergenic 20.0%
!!! ATATTTGGCTTGTAAAATTA+TGG - chr4_3:6032714-6032733 Msa0626450:CDS 20.0%
!!! TTCCTCTAAAACAAGAAAAT+GGG - chr4_3:6029018-6029037 Msa0626450:three_prime_UTR 25.0%
!! AATGGTCTCTTTTAATCATA+TGG + chr4_3:6029104-6029123 None:intergenic 25.0%
! TTACTTGAACAGAATCAAAA+TGG + chr4_3:6029122-6029141 None:intergenic 25.0%
! GAGATATTAATTGTTTGATG+TGG - chr4_3:6029430-6029449 Msa0626450:CDS 25.0%
! TCATTGAAATGATGATTTGA+AGG - chr4_3:6029464-6029483 Msa0626450:CDS 25.0%
!! TGACTTTTTATATATAGGAC+CGG - chr4_3:6029579-6029598 Msa0626450:intron 25.0%
!! ACAAGAAAATGTTTCTGATT+TGG - chr4_3:6029733-6029752 Msa0626450:intron 25.0%
!!! ACAACAATCTATTTTTATCG+GGG + chr4_3:6029893-6029912 None:intergenic 25.0%
! TACAAGGATAATAAATTTCC+AGG - chr4_3:6030182-6030201 Msa0626450:CDS 25.0%
! AACCTATGAAAATGTAAAGA+TGG - chr4_3:6030220-6030239 Msa0626450:CDS 25.0%
!! ATCCATCTTTACATTTTCAT+AGG + chr4_3:6030225-6030244 None:intergenic 25.0%
! ACACATGTAAGAAAGAATAT+AGG - chr4_3:6030248-6030267 Msa0626450:CDS 25.0%
! CACATGTAAGAAAGAATATA+GGG - chr4_3:6030249-6030268 Msa0626450:CDS 25.0%
! AATTTAATATTACCTCCAGA+CGG + chr4_3:6030320-6030339 None:intergenic 25.0%
!! ATCAAAATGAGGATTTTTGT+TGG - chr4_3:6030538-6030557 Msa0626450:intron 25.0%
! ATTAGTGATGTAAGATATTG+CGG - chr4_3:6030562-6030581 Msa0626450:intron 25.0%
!!! GGTGTCATTATTGTATATTT+AGG - chr4_3:6030649-6030668 Msa0626450:CDS 25.0%
! GTCATTATTGTATATTTAGG+TGG - chr4_3:6030652-6030671 Msa0626450:CDS 25.0%
!! CAAGTTTATATCAATTTTGG+AGG + chr4_3:6030711-6030730 None:intergenic 25.0%
! GCAAAAAAAGCTTCAAAATA+TGG + chr4_3:6030737-6030756 None:intergenic 25.0%
! TACATTTAACACAATTTAGG+TGG - chr4_3:6030825-6030844 Msa0626450:intron 25.0%
!!! TGAATGAATTGATTTTGTAG+AGG + chr4_3:6030856-6030875 None:intergenic 25.0%
!! AGTCTTTTCATAACTATCAT+TGG + chr4_3:6030941-6030960 None:intergenic 25.0%
!! CAAATTTTACAATACTGCAT+TGG + chr4_3:6031017-6031036 None:intergenic 25.0%
!! TTTATACACCGAATCTTTTA+TGG + chr4_3:6031224-6031243 None:intergenic 25.0%
!! TTTTGCTTATATTTCGTTCT+GGG - chr4_3:6031279-6031298 Msa0626450:intron 25.0%
!!! TTTTTAGTTGTTACATGAGA+AGG + chr4_3:6031427-6031446 None:intergenic 25.0%
! GAACCAATTTATAGATCAAA+GGG - chr4_3:6031505-6031524 Msa0626450:CDS 25.0%
! TTTCCCTTTGATCTATAAAT+TGG + chr4_3:6031511-6031530 None:intergenic 25.0%
! TGATTGTGTCAAATAAATTG+TGG + chr4_3:6031854-6031873 None:intergenic 25.0%
! CAATTTATTTGACACAATCA+AGG - chr4_3:6031854-6031873 Msa0626450:intron 25.0%
!! TAGTAAATTTGCTTACTTTC+TGG - chr4_3:6032088-6032107 Msa0626450:intron 25.0%
!!! ATTCAGAATCTTTAGAATCT+AGG + chr4_3:6032304-6032323 None:intergenic 25.0%
!! AGATTCTAAAGATTCTGAAT+TGG - chr4_3:6032304-6032323 Msa0626450:intron 25.0%
! TTCTGGTAAAACACAAATAT+TGG - chr4_3:6032424-6032443 Msa0626450:intron 25.0%
! AATAACAAGAATATGCAAAG+TGG + chr4_3:6032520-6032539 None:intergenic 25.0%
!!! TCAAGAGTTACAGTTTTTTT+AGG - chr4_3:6032576-6032595 Msa0626450:intron 25.0%
!!! CAAGAGTTACAGTTTTTTTA+GGG - chr4_3:6032577-6032596 Msa0626450:intron 25.0%
! ATTTAACATGTATGTACACA+AGG - chr4_3:6032683-6032702 Msa0626450:CDS 25.0%
! CTCATTAAGAACAAGAATTA+TGG + chr4_3:6032745-6032764 None:intergenic 25.0%
!!! TTCCTCTAAAACAAGAAAAT+GGG - chr4_3:6029018-6029037 Msa0626450:three_prime_UTR 25.0%
!! AATGGTCTCTTTTAATCATA+TGG + chr4_3:6029104-6029123 None:intergenic 25.0%
! TTACTTGAACAGAATCAAAA+TGG + chr4_3:6029122-6029141 None:intergenic 25.0%
! GAGATATTAATTGTTTGATG+TGG - chr4_3:6029430-6029449 Msa0626450:CDS 25.0%
! TCATTGAAATGATGATTTGA+AGG - chr4_3:6029464-6029483 Msa0626450:CDS 25.0%
!! TGACTTTTTATATATAGGAC+CGG - chr4_3:6029579-6029598 Msa0626450:intron 25.0%
!! ACAAGAAAATGTTTCTGATT+TGG - chr4_3:6029733-6029752 Msa0626450:intron 25.0%
!!! ACAACAATCTATTTTTATCG+GGG + chr4_3:6029893-6029912 None:intergenic 25.0%
! TACAAGGATAATAAATTTCC+AGG - chr4_3:6030182-6030201 Msa0626450:CDS 25.0%
! AACCTATGAAAATGTAAAGA+TGG - chr4_3:6030220-6030239 Msa0626450:CDS 25.0%
!! ATCCATCTTTACATTTTCAT+AGG + chr4_3:6030225-6030244 None:intergenic 25.0%
! ACACATGTAAGAAAGAATAT+AGG - chr4_3:6030248-6030267 Msa0626450:CDS 25.0%
! CACATGTAAGAAAGAATATA+GGG - chr4_3:6030249-6030268 Msa0626450:CDS 25.0%
! AATTTAATATTACCTCCAGA+CGG + chr4_3:6030320-6030339 None:intergenic 25.0%
!! ATCAAAATGAGGATTTTTGT+TGG - chr4_3:6030538-6030557 Msa0626450:intron 25.0%
! ATTAGTGATGTAAGATATTG+CGG - chr4_3:6030562-6030581 Msa0626450:intron 25.0%
!!! GGTGTCATTATTGTATATTT+AGG - chr4_3:6030649-6030668 Msa0626450:CDS 25.0%
! GTCATTATTGTATATTTAGG+TGG - chr4_3:6030652-6030671 Msa0626450:CDS 25.0%
!! CAAGTTTATATCAATTTTGG+AGG + chr4_3:6030711-6030730 None:intergenic 25.0%
! GCAAAAAAAGCTTCAAAATA+TGG + chr4_3:6030737-6030756 None:intergenic 25.0%
! TACATTTAACACAATTTAGG+TGG - chr4_3:6030825-6030844 Msa0626450:intron 25.0%
!!! TGAATGAATTGATTTTGTAG+AGG + chr4_3:6030856-6030875 None:intergenic 25.0%
!! AGTCTTTTCATAACTATCAT+TGG + chr4_3:6030941-6030960 None:intergenic 25.0%
!! CAAATTTTACAATACTGCAT+TGG + chr4_3:6031017-6031036 None:intergenic 25.0%
!! TTTATACACCGAATCTTTTA+TGG + chr4_3:6031224-6031243 None:intergenic 25.0%
!! TTTTGCTTATATTTCGTTCT+GGG - chr4_3:6031279-6031298 Msa0626450:intron 25.0%
!!! TTTTTAGTTGTTACATGAGA+AGG + chr4_3:6031427-6031446 None:intergenic 25.0%
! GAACCAATTTATAGATCAAA+GGG - chr4_3:6031505-6031524 Msa0626450:CDS 25.0%
! TTTCCCTTTGATCTATAAAT+TGG + chr4_3:6031511-6031530 None:intergenic 25.0%
! TGATTGTGTCAAATAAATTG+TGG + chr4_3:6031854-6031873 None:intergenic 25.0%
! CAATTTATTTGACACAATCA+AGG - chr4_3:6031854-6031873 Msa0626450:intron 25.0%
!! TAGTAAATTTGCTTACTTTC+TGG - chr4_3:6032088-6032107 Msa0626450:intron 25.0%
!!! ATTCAGAATCTTTAGAATCT+AGG + chr4_3:6032304-6032323 None:intergenic 25.0%
!! AGATTCTAAAGATTCTGAAT+TGG - chr4_3:6032304-6032323 Msa0626450:intron 25.0%
! TTCTGGTAAAACACAAATAT+TGG - chr4_3:6032424-6032443 Msa0626450:intron 25.0%
! AATAACAAGAATATGCAAAG+TGG + chr4_3:6032520-6032539 None:intergenic 25.0%
!!! TCAAGAGTTACAGTTTTTTT+AGG - chr4_3:6032576-6032595 Msa0626450:intron 25.0%
!!! CAAGAGTTACAGTTTTTTTA+GGG - chr4_3:6032577-6032596 Msa0626450:intron 25.0%
! ATTTAACATGTATGTACACA+AGG - chr4_3:6032683-6032702 Msa0626450:CDS 25.0%
! CTCATTAAGAACAAGAATTA+TGG + chr4_3:6032745-6032764 None:intergenic 25.0%
AAAAGAAAAGAAGAAAGTCC+AGG - chr4_3:6028864-6028883 Msa0626450:three_prime_UTR 30.0%
AGAAGAAGAAAAAGAAGAGA+AGG + chr4_3:6028989-6029008 None:intergenic 30.0%
!! GTTCCTCTAAAACAAGAAAA+TGG - chr4_3:6029017-6029036 Msa0626450:three_prime_UTR 30.0%
!!! AACCCATTTTCTTGTTTTAG+AGG + chr4_3:6029023-6029042 None:intergenic 30.0%
AGATCCTTAGTTTATAGACT+AGG - chr4_3:6029408-6029427 Msa0626450:CDS 30.0%
ATCTCCTAGTCTATAAACTA+AGG + chr4_3:6029415-6029434 None:intergenic 30.0%
TTGTTATATATAGGACTGGA+GGG + chr4_3:6029519-6029538 None:intergenic 30.0%
! TTTGTTATATATAGGACTGG+AGG + chr4_3:6029520-6029539 None:intergenic 30.0%
! TTTTTATATATAGGACCGGA+GGG - chr4_3:6029583-6029602 Msa0626450:intron 30.0%
!!! GCTCTATGTCTGAATTTTTT+TGG - chr4_3:6029710-6029729 Msa0626450:intron 30.0%
! TTTCTCATCGTATTTTCTCT+CGG - chr4_3:6030039-6030058 Msa0626450:CDS 30.0%
!!! CTCTTTGTTTTTGCTTTACA+AGG - chr4_3:6030166-6030185 Msa0626450:CDS 30.0%
TAAGAAAGAATATAGGGCTT+TGG - chr4_3:6030255-6030274 Msa0626450:CDS 30.0%
! TTAAGTTTTGCAACTTTTCG+AGG - chr4_3:6030340-6030359 Msa0626450:CDS 30.0%
AAATACAATCCAAACGCATA+TGG + chr4_3:6030369-6030388 None:intergenic 30.0%
! ATTCATATTTTGTCGATGGT+TGG - chr4_3:6030412-6030431 Msa0626450:CDS 30.0%
! GTTACCTTTTCATTAACCAA+TGG - chr4_3:6030464-6030483 Msa0626450:intron 30.0%
! GTGATTGACTTATCAAAATG+AGG - chr4_3:6030527-6030546 Msa0626450:intron 30.0%
CATCTAAGGGAAAATATCTT+TGG + chr4_3:6030602-6030621 None:intergenic 30.0%
AGAAGAAGGAAATCATCTAA+GGG + chr4_3:6030615-6030634 None:intergenic 30.0%
! AATAATGACACCGTTTCTTT+TGG + chr4_3:6030641-6030660 None:intergenic 30.0%
TGTATATTTAGGTGGATGTT+TGG - chr4_3:6030660-6030679 Msa0626450:CDS 30.0%
! TGGGTTGAACAATTAATTTG+AGG + chr4_3:6030779-6030798 None:intergenic 30.0%
!!! TAAGTTTGTGTTTGGTTTTG+CGG + chr4_3:6030895-6030914 None:intergenic 30.0%
ACTACTACTAAGTTTGTGTT+TGG + chr4_3:6030903-6030922 None:intergenic 30.0%
! AGTTCTGACCATAAAAGATT+CGG - chr4_3:6031213-6031232 Msa0626450:intron 30.0%
CACATTCACGATCAATAATT+TGG - chr4_3:6031251-6031270 Msa0626450:intron 30.0%
! GTTTTGCTTATATTTCGTTC+TGG - chr4_3:6031278-6031297 Msa0626450:intron 30.0%
TTTGCTTATATTTCGTTCTG+GGG - chr4_3:6031280-6031299 Msa0626450:intron 30.0%
CCTGAGACATGAATTATATT+AGG + chr4_3:6031329-6031348 None:intergenic 30.0%
CCTAATATAATTCATGTCTC+AGG - chr4_3:6031326-6031345 Msa0626450:CDS 30.0%
TAAAAAAATTGCTGCTGTGA+AGG - chr4_3:6031441-6031460 Msa0626450:intron 30.0%
CGAACCAATTTATAGATCAA+AGG - chr4_3:6031504-6031523 Msa0626450:CDS 30.0%
GACTTTCTCATGTTTATTGA+AGG + chr4_3:6031556-6031575 None:intergenic 30.0%
TCAATAAACATGAGAAAGTC+AGG - chr4_3:6031556-6031575 Msa0626450:CDS 30.0%
CAATAAACATGAGAAAGTCA+GGG - chr4_3:6031557-6031576 Msa0626450:CDS 30.0%
! TAAATTGACCGTCTGATTTT+CGG + chr4_3:6031696-6031715 None:intergenic 30.0%
CATCATTATCATCATTTCCT+TGG + chr4_3:6031762-6031781 None:intergenic 30.0%
! CAAGGAAATGATGATAATGA+TGG - chr4_3:6031760-6031779 Msa0626450:intron 30.0%
!! GAGAAAGATTGGTATTGATA+AGG - chr4_3:6031825-6031844 Msa0626450:intron 30.0%
TTTATTTGACACAATCAAGG+TGG - chr4_3:6031857-6031876 Msa0626450:intron 30.0%
TTATTTGACACAATCAAGGT+GGG - chr4_3:6031858-6031877 Msa0626450:intron 30.0%
TTTCCTCTTAAAAATGTTGC+AGG - chr4_3:6032244-6032263 Msa0626450:intron 30.0%
!! TGTTTTTGTACCAGCAATTT+CGG - chr4_3:6032364-6032383 Msa0626450:intron 30.0%
! GTTTTTCTTGGAGATATAAG+GGG + chr4_3:6032498-6032517 None:intergenic 30.0%
! GGTTTTTCTTGGAGATATAA+GGG + chr4_3:6032499-6032518 None:intergenic 30.0%
! TGGTTTTTCTTGGAGATATA+AGG + chr4_3:6032500-6032519 None:intergenic 30.0%
! ATATGCAAAGTGGTTTTTCT+TGG + chr4_3:6032510-6032529 None:intergenic 30.0%
TAGATAAACATTCATCCCAA+TGG - chr4_3:6032818-6032837 Msa0626450:five_prime_UTR 30.0%
AGATAAACATTCATCCCAAT+GGG - chr4_3:6032819-6032838 Msa0626450:five_prime_UTR 30.0%
AAAAGAAAAGAAGAAAGTCC+AGG - chr4_3:6028864-6028883 Msa0626450:three_prime_UTR 30.0%
AGAAGAAGAAAAAGAAGAGA+AGG + chr4_3:6028989-6029008 None:intergenic 30.0%
!! GTTCCTCTAAAACAAGAAAA+TGG - chr4_3:6029017-6029036 Msa0626450:three_prime_UTR 30.0%
!!! AACCCATTTTCTTGTTTTAG+AGG + chr4_3:6029023-6029042 None:intergenic 30.0%
AGATCCTTAGTTTATAGACT+AGG - chr4_3:6029408-6029427 Msa0626450:CDS 30.0%
ATCTCCTAGTCTATAAACTA+AGG + chr4_3:6029415-6029434 None:intergenic 30.0%
TTGTTATATATAGGACTGGA+GGG + chr4_3:6029519-6029538 None:intergenic 30.0%
! TTTGTTATATATAGGACTGG+AGG + chr4_3:6029520-6029539 None:intergenic 30.0%
! TTTTTATATATAGGACCGGA+GGG - chr4_3:6029583-6029602 Msa0626450:intron 30.0%
!!! GCTCTATGTCTGAATTTTTT+TGG - chr4_3:6029710-6029729 Msa0626450:intron 30.0%
! TTTCTCATCGTATTTTCTCT+CGG - chr4_3:6030039-6030058 Msa0626450:CDS 30.0%
!!! CTCTTTGTTTTTGCTTTACA+AGG - chr4_3:6030166-6030185 Msa0626450:CDS 30.0%
TAAGAAAGAATATAGGGCTT+TGG - chr4_3:6030255-6030274 Msa0626450:CDS 30.0%
! TTAAGTTTTGCAACTTTTCG+AGG - chr4_3:6030340-6030359 Msa0626450:CDS 30.0%
AAATACAATCCAAACGCATA+TGG + chr4_3:6030369-6030388 None:intergenic 30.0%
! ATTCATATTTTGTCGATGGT+TGG - chr4_3:6030412-6030431 Msa0626450:CDS 30.0%
! GTTACCTTTTCATTAACCAA+TGG - chr4_3:6030464-6030483 Msa0626450:intron 30.0%
! GTGATTGACTTATCAAAATG+AGG - chr4_3:6030527-6030546 Msa0626450:intron 30.0%
CATCTAAGGGAAAATATCTT+TGG + chr4_3:6030602-6030621 None:intergenic 30.0%
AGAAGAAGGAAATCATCTAA+GGG + chr4_3:6030615-6030634 None:intergenic 30.0%
! AATAATGACACCGTTTCTTT+TGG + chr4_3:6030641-6030660 None:intergenic 30.0%
TGTATATTTAGGTGGATGTT+TGG - chr4_3:6030660-6030679 Msa0626450:CDS 30.0%
! TGGGTTGAACAATTAATTTG+AGG + chr4_3:6030779-6030798 None:intergenic 30.0%
!!! TAAGTTTGTGTTTGGTTTTG+CGG + chr4_3:6030895-6030914 None:intergenic 30.0%
ACTACTACTAAGTTTGTGTT+TGG + chr4_3:6030903-6030922 None:intergenic 30.0%
! AGTTCTGACCATAAAAGATT+CGG - chr4_3:6031213-6031232 Msa0626450:intron 30.0%
CACATTCACGATCAATAATT+TGG - chr4_3:6031251-6031270 Msa0626450:intron 30.0%
! GTTTTGCTTATATTTCGTTC+TGG - chr4_3:6031278-6031297 Msa0626450:intron 30.0%
TTTGCTTATATTTCGTTCTG+GGG - chr4_3:6031280-6031299 Msa0626450:intron 30.0%
CCTGAGACATGAATTATATT+AGG + chr4_3:6031329-6031348 None:intergenic 30.0%
CCTAATATAATTCATGTCTC+AGG - chr4_3:6031326-6031345 Msa0626450:CDS 30.0%
TAAAAAAATTGCTGCTGTGA+AGG - chr4_3:6031441-6031460 Msa0626450:intron 30.0%
CGAACCAATTTATAGATCAA+AGG - chr4_3:6031504-6031523 Msa0626450:CDS 30.0%
GACTTTCTCATGTTTATTGA+AGG + chr4_3:6031556-6031575 None:intergenic 30.0%
TCAATAAACATGAGAAAGTC+AGG - chr4_3:6031556-6031575 Msa0626450:CDS 30.0%
CAATAAACATGAGAAAGTCA+GGG - chr4_3:6031557-6031576 Msa0626450:CDS 30.0%
! TAAATTGACCGTCTGATTTT+CGG + chr4_3:6031696-6031715 None:intergenic 30.0%
CATCATTATCATCATTTCCT+TGG + chr4_3:6031762-6031781 None:intergenic 30.0%
! CAAGGAAATGATGATAATGA+TGG - chr4_3:6031760-6031779 Msa0626450:intron 30.0%
!! GAGAAAGATTGGTATTGATA+AGG - chr4_3:6031825-6031844 Msa0626450:intron 30.0%
TTTATTTGACACAATCAAGG+TGG - chr4_3:6031857-6031876 Msa0626450:intron 30.0%
TTATTTGACACAATCAAGGT+GGG - chr4_3:6031858-6031877 Msa0626450:intron 30.0%
TTTCCTCTTAAAAATGTTGC+AGG - chr4_3:6032244-6032263 Msa0626450:intron 30.0%
!! TGTTTTTGTACCAGCAATTT+CGG - chr4_3:6032364-6032383 Msa0626450:intron 30.0%
! GTTTTTCTTGGAGATATAAG+GGG + chr4_3:6032498-6032517 None:intergenic 30.0%
! GGTTTTTCTTGGAGATATAA+GGG + chr4_3:6032499-6032518 None:intergenic 30.0%
! TGGTTTTTCTTGGAGATATA+AGG + chr4_3:6032500-6032519 None:intergenic 30.0%
! ATATGCAAAGTGGTTTTTCT+TGG + chr4_3:6032510-6032529 None:intergenic 30.0%
TAGATAAACATTCATCCCAA+TGG - chr4_3:6032818-6032837 Msa0626450:five_prime_UTR 30.0%
AGATAAACATTCATCCCAAT+GGG - chr4_3:6032819-6032838 Msa0626450:five_prime_UTR 30.0%
! ATCATTGTCAGTGAAAGTGT+CGG - chr4_3:6028905-6028924 Msa0626450:three_prime_UTR 35.0%
TAACAAACATAGTGAGAGTG+AGG + chr4_3:6029074-6029093 None:intergenic 35.0%
! CTTTTTATATATAGGACCGG+AGG - chr4_3:6029582-6029601 Msa0626450:intron 35.0%
ATTTGGACAGTGATACTGAT+AGG - chr4_3:6029612-6029631 Msa0626450:intron 35.0%
CAACAACTATACTAGAGTCT+AGG + chr4_3:6029646-6029665 None:intergenic 35.0%
!!! AATCTATTTTTATCGGGGAG+GGG + chr4_3:6029888-6029907 None:intergenic 35.0%
!!! CAATCTATTTTTATCGGGGA+GGG + chr4_3:6029889-6029908 None:intergenic 35.0%
!!! ACAATCTATTTTTATCGGGG+AGG + chr4_3:6029890-6029909 None:intergenic 35.0%
!!! AACGAAAAGCACCGTTTTAA+TGG - chr4_3:6029925-6029944 Msa0626450:CDS 35.0%
!! AAAGAATATAGGGCTTTGGA+AGG - chr4_3:6030259-6030278 Msa0626450:CDS 35.0%
!! AAGAATATAGGGCTTTGGAA+GGG - chr4_3:6030260-6030279 Msa0626450:CDS 35.0%
! TGGACCATTGGTTAATGAAA+AGG + chr4_3:6030471-6030490 None:intergenic 35.0%
TTGAATGGTTTACCTGAGAT+AGG + chr4_3:6030502-6030521 None:intergenic 35.0%
AGTCAATCACAACGATTGAA+TGG + chr4_3:6030517-6030536 None:intergenic 35.0%
GAGAAGAAGGAAATCATCTA+AGG + chr4_3:6030616-6030635 None:intergenic 35.0%
TTCTTCTCCACCAAAAGAAA+CGG - chr4_3:6030628-6030647 Msa0626450:CDS 35.0%
!! TACAATACTGCATTGGCTTA+AGG + chr4_3:6031010-6031029 None:intergenic 35.0%
AACAGGGAAATGGAAAATGA+AGG + chr4_3:6031072-6031091 None:intergenic 35.0%
TATCTGGACATGAAGCATAT+TGG + chr4_3:6031107-6031126 None:intergenic 35.0%
GTAATTGTGGCTAGATATCT+CGG - chr4_3:6031136-6031155 Msa0626450:intron 35.0%
TTGCTTATATTTCGTTCTGG+GGG - chr4_3:6031281-6031300 Msa0626450:intron 35.0%
ATAGATCAAAGGGAAACGTA+AGG - chr4_3:6031515-6031534 Msa0626450:CDS 35.0%
ATGAGAAAGTCAGGGAAAAA+AGG - chr4_3:6031565-6031584 Msa0626450:CDS 35.0%
ATACATTGCTAAGCATGCAA+TGG + chr4_3:6031602-6031621 None:intergenic 35.0%
ATTGCATGCTTAGCAATGTA+TGG - chr4_3:6031601-6031620 Msa0626450:CDS 35.0%
CTTAGCAATGTATGGAAGTT+TGG - chr4_3:6031609-6031628 Msa0626450:intron 35.0%
TCGACAAGATCATGTATTTC+CGG + chr4_3:6031643-6031662 None:intergenic 35.0%
ACTTTAAGCCGAAAATCAGA+CGG - chr4_3:6031685-6031704 Msa0626450:intron 35.0%
GTTGAGATGTTGAACAAGAA+AGG - chr4_3:6031733-6031752 Msa0626450:intron 35.0%
AATCTCTTGTGCATTGAAAC+AGG + chr4_3:6031794-6031813 None:intergenic 35.0%
!! GCAGTGTTTTTGAGAAAGAT+TGG - chr4_3:6031814-6031833 Msa0626450:intron 35.0%
! TGATAGCCTTGATTCTCTTA+AGG - chr4_3:6031882-6031901 Msa0626450:intron 35.0%
!!! TCGTGTAAGTTTTAGGAAAC+AGG + chr4_3:6031909-6031928 None:intergenic 35.0%
GTTTCCTAAAACTTACACGA+AGG - chr4_3:6031909-6031928 Msa0626450:intron 35.0%
!! GATTTGCTAACTGTGTGAAT+GGG + chr4_3:6032026-6032045 None:intergenic 35.0%
AGACTATTCAAATGTGTGTG+CGG + chr4_3:6032188-6032207 None:intergenic 35.0%
!! ACTCCTGCAACATTTTTAAG+AGG + chr4_3:6032250-6032269 None:intergenic 35.0%
TGGTACAAAAACATCACTCT+CGG + chr4_3:6032357-6032376 None:intergenic 35.0%
! GTTTTTGTACCAGCAATTTC+GGG - chr4_3:6032365-6032384 Msa0626450:intron 35.0%
AGCCGTAATTTCAGATTCAT+CGG - chr4_3:6032451-6032470 Msa0626450:intron 35.0%
! AGCCGATGAATCTGAAATTA+CGG + chr4_3:6032456-6032475 None:intergenic 35.0%
!!! TACAGTTTTTTTAGGGCCTA+AGG - chr4_3:6032584-6032603 Msa0626450:intron 35.0%
ATCTGCAAACAAAAGACCTT+AGG + chr4_3:6032603-6032622 None:intergenic 35.0%
CACAAGGCTATTCACATATT+TGG - chr4_3:6032699-6032718 Msa0626450:CDS 35.0%
!! GATACTGCATTCATTGACTT+TGG - chr4_3:6032775-6032794 Msa0626450:five_prime_UTR 35.0%
GATAAACATTCATCCCAATG+GGG - chr4_3:6032820-6032839 Msa0626450:five_prime_UTR 35.0%
! ATCATTGTCAGTGAAAGTGT+CGG - chr4_3:6028905-6028924 Msa0626450:three_prime_UTR 35.0%
TAACAAACATAGTGAGAGTG+AGG + chr4_3:6029074-6029093 None:intergenic 35.0%
! CTTTTTATATATAGGACCGG+AGG - chr4_3:6029582-6029601 Msa0626450:intron 35.0%
ATTTGGACAGTGATACTGAT+AGG - chr4_3:6029612-6029631 Msa0626450:intron 35.0%
CAACAACTATACTAGAGTCT+AGG + chr4_3:6029646-6029665 None:intergenic 35.0%
!!! AATCTATTTTTATCGGGGAG+GGG + chr4_3:6029888-6029907 None:intergenic 35.0%
!!! CAATCTATTTTTATCGGGGA+GGG + chr4_3:6029889-6029908 None:intergenic 35.0%
!!! ACAATCTATTTTTATCGGGG+AGG + chr4_3:6029890-6029909 None:intergenic 35.0%
!!! AACGAAAAGCACCGTTTTAA+TGG - chr4_3:6029925-6029944 Msa0626450:CDS 35.0%
!! AAAGAATATAGGGCTTTGGA+AGG - chr4_3:6030259-6030278 Msa0626450:CDS 35.0%
!! AAGAATATAGGGCTTTGGAA+GGG - chr4_3:6030260-6030279 Msa0626450:CDS 35.0%
! TGGACCATTGGTTAATGAAA+AGG + chr4_3:6030471-6030490 None:intergenic 35.0%
TTGAATGGTTTACCTGAGAT+AGG + chr4_3:6030502-6030521 None:intergenic 35.0%
AGTCAATCACAACGATTGAA+TGG + chr4_3:6030517-6030536 None:intergenic 35.0%
GAGAAGAAGGAAATCATCTA+AGG + chr4_3:6030616-6030635 None:intergenic 35.0%
TTCTTCTCCACCAAAAGAAA+CGG - chr4_3:6030628-6030647 Msa0626450:CDS 35.0%
!! TACAATACTGCATTGGCTTA+AGG + chr4_3:6031010-6031029 None:intergenic 35.0%
AACAGGGAAATGGAAAATGA+AGG + chr4_3:6031072-6031091 None:intergenic 35.0%
TATCTGGACATGAAGCATAT+TGG + chr4_3:6031107-6031126 None:intergenic 35.0%
GTAATTGTGGCTAGATATCT+CGG - chr4_3:6031136-6031155 Msa0626450:intron 35.0%
TTGCTTATATTTCGTTCTGG+GGG - chr4_3:6031281-6031300 Msa0626450:intron 35.0%
ATAGATCAAAGGGAAACGTA+AGG - chr4_3:6031515-6031534 Msa0626450:CDS 35.0%
ATGAGAAAGTCAGGGAAAAA+AGG - chr4_3:6031565-6031584 Msa0626450:CDS 35.0%
ATACATTGCTAAGCATGCAA+TGG + chr4_3:6031602-6031621 None:intergenic 35.0%
ATTGCATGCTTAGCAATGTA+TGG - chr4_3:6031601-6031620 Msa0626450:CDS 35.0%
CTTAGCAATGTATGGAAGTT+TGG - chr4_3:6031609-6031628 Msa0626450:intron 35.0%
TCGACAAGATCATGTATTTC+CGG + chr4_3:6031643-6031662 None:intergenic 35.0%
ACTTTAAGCCGAAAATCAGA+CGG - chr4_3:6031685-6031704 Msa0626450:intron 35.0%
GTTGAGATGTTGAACAAGAA+AGG - chr4_3:6031733-6031752 Msa0626450:intron 35.0%
AATCTCTTGTGCATTGAAAC+AGG + chr4_3:6031794-6031813 None:intergenic 35.0%
!! GCAGTGTTTTTGAGAAAGAT+TGG - chr4_3:6031814-6031833 Msa0626450:intron 35.0%
! TGATAGCCTTGATTCTCTTA+AGG - chr4_3:6031882-6031901 Msa0626450:intron 35.0%
!!! TCGTGTAAGTTTTAGGAAAC+AGG + chr4_3:6031909-6031928 None:intergenic 35.0%
GTTTCCTAAAACTTACACGA+AGG - chr4_3:6031909-6031928 Msa0626450:intron 35.0%
!! GATTTGCTAACTGTGTGAAT+GGG + chr4_3:6032026-6032045 None:intergenic 35.0%
AGACTATTCAAATGTGTGTG+CGG + chr4_3:6032188-6032207 None:intergenic 35.0%
!! ACTCCTGCAACATTTTTAAG+AGG + chr4_3:6032250-6032269 None:intergenic 35.0%
TGGTACAAAAACATCACTCT+CGG + chr4_3:6032357-6032376 None:intergenic 35.0%
! GTTTTTGTACCAGCAATTTC+GGG - chr4_3:6032365-6032384 Msa0626450:intron 35.0%
AGCCGTAATTTCAGATTCAT+CGG - chr4_3:6032451-6032470 Msa0626450:intron 35.0%
! AGCCGATGAATCTGAAATTA+CGG + chr4_3:6032456-6032475 None:intergenic 35.0%
!!! TACAGTTTTTTTAGGGCCTA+AGG - chr4_3:6032584-6032603 Msa0626450:intron 35.0%
ATCTGCAAACAAAAGACCTT+AGG + chr4_3:6032603-6032622 None:intergenic 35.0%
CACAAGGCTATTCACATATT+TGG - chr4_3:6032699-6032718 Msa0626450:CDS 35.0%
!! GATACTGCATTCATTGACTT+TGG - chr4_3:6032775-6032794 Msa0626450:five_prime_UTR 35.0%
GATAAACATTCATCCCAATG+GGG - chr4_3:6032820-6032839 Msa0626450:five_prime_UTR 35.0%
GAAAAGAAGAAAGTCCAGGT+AGG - chr4_3:6028868-6028887 Msa0626450:three_prime_UTR 40.0%
GAAAGTCCAGGTAGGATATT+AGG - chr4_3:6028876-6028895 Msa0626450:three_prime_UTR 40.0%
GTTCTTCCTAATATCCTACC+TGG + chr4_3:6028885-6028904 None:intergenic 40.0%
! GATTTGAGACAAGTAGTTGC+TGG - chr4_3:6029045-6029064 Msa0626450:three_prime_UTR 40.0%
TGTCCAAATTATACTCCCTC+CGG + chr4_3:6029601-6029620 None:intergenic 40.0%
!! GGGGAAATTTGTTAGTAGCA+GGG + chr4_3:6029869-6029888 None:intergenic 40.0%
!! AGGGGAAATTTGTTAGTAGC+AGG + chr4_3:6029870-6029889 None:intergenic 40.0%
! AAACGGTGCTTTTCGTTCAA+AGG + chr4_3:6029922-6029941 None:intergenic 40.0%
GCTCCATGGTTCCATTAAAA+CGG + chr4_3:6029939-6029958 None:intergenic 40.0%
TAATATATTCGGCAGCTCCA+TGG + chr4_3:6029953-6029972 None:intergenic 40.0%
! ATGCAAGTGCTTTTCTGATC+CGG - chr4_3:6030078-6030097 Msa0626450:CDS 40.0%
TGACGAGTTAAAACCGTGTT+GGG - chr4_3:6030289-6030308 Msa0626450:CDS 40.0%
AATGGTTTACCTGAGATAGG+TGG + chr4_3:6030499-6030518 None:intergenic 40.0%
! GTTTCTTTTGGTGGAGAAGA+AGG + chr4_3:6030629-6030648 None:intergenic 40.0%
! AATGACACCGTTTCTTTTGG+TGG + chr4_3:6030638-6030657 None:intergenic 40.0%
ACGAAAGAAGAACAGGGAAA+TGG + chr4_3:6031082-6031101 None:intergenic 40.0%
!! TTGGTGACGAAAGAAGAACA+GGG + chr4_3:6031088-6031107 None:intergenic 40.0%
!! ATTGGTGACGAAAGAAGAAC+AGG + chr4_3:6031089-6031108 None:intergenic 40.0%
CAATTACTGCATCTGCTATC+TGG + chr4_3:6031123-6031142 None:intergenic 40.0%
GATAGCAGATGCAGTAATTG+TGG - chr4_3:6031123-6031142 Msa0626450:intron 40.0%
! TGCTTATATTTCGTTCTGGG+GGG - chr4_3:6031282-6031301 Msa0626450:intron 40.0%
TTCATGTCTCAGGAACTTTG+AGG - chr4_3:6031336-6031355 Msa0626450:CDS 40.0%
TGACGTGTTCATGAAAAGCA+TGG - chr4_3:6031372-6031391 Msa0626450:intron 40.0%
! GTGTTCATGAAAAGCATGGA+AGG - chr4_3:6031376-6031395 Msa0626450:intron 40.0%
CTATGTAATCTTCGGTAACC+CGG + chr4_3:6031474-6031493 None:intergenic 40.0%
GTGTCGAGCTATGTAATCTT+CGG + chr4_3:6031482-6031501 None:intergenic 40.0%
!! ACATGATCTTGTCGACTCAA+TGG - chr4_3:6031648-6031667 Msa0626450:intron 40.0%
!! TTGTCGACTCAATGGTTGAA+AGG - chr4_3:6031656-6031675 Msa0626450:intron 40.0%
AGACGGTCAATTTATTGCTG+TGG - chr4_3:6031702-6031721 Msa0626450:intron 40.0%
TTGAACAAGAAAGGTTGCCA+AGG - chr4_3:6031742-6031761 Msa0626450:intron 40.0%
ACAGGTCCTTAAGAGAATCA+AGG + chr4_3:6031891-6031910 None:intergenic 40.0%
! CTCACCTTCGTGTAAGTTTT+AGG + chr4_3:6031916-6031935 None:intergenic 40.0%
!! CGATTTGCTAACTGTGTGAA+TGG + chr4_3:6032027-6032046 None:intergenic 40.0%
TCACACAGTTAGCAAATCGA+TGG - chr4_3:6032028-6032047 Msa0626450:intron 40.0%
GTCGTAGGATTGAGATAAGA+CGG - chr4_3:6032050-6032069 Msa0626450:intron 40.0%
GACTATTCAAATGTGTGTGC+GGG + chr4_3:6032187-6032206 None:intergenic 40.0%
AACTTTGTCTTCTTATCCGC+CGG + chr4_3:6032281-6032300 None:intergenic 40.0%
TACAATAGACCCGAAATTGC+TGG + chr4_3:6032377-6032396 None:intergenic 40.0%
AACGTAGCTGGTAAAAGGAT+CGG - chr4_3:6032401-6032420 Msa0626450:intron 40.0%
! GATGAATCTGAAATTACGGC+TGG + chr4_3:6032452-6032471 None:intergenic 40.0%
TACACTAAGTCAACCCCATT+GGG + chr4_3:6032836-6032855 None:intergenic 40.0%
ATACACTAAGTCAACCCCAT+TGG + chr4_3:6032837-6032856 None:intergenic 40.0%
GAAAAGAAGAAAGTCCAGGT+AGG - chr4_3:6028868-6028887 Msa0626450:three_prime_UTR 40.0%
GAAAGTCCAGGTAGGATATT+AGG - chr4_3:6028876-6028895 Msa0626450:three_prime_UTR 40.0%
GTTCTTCCTAATATCCTACC+TGG + chr4_3:6028885-6028904 None:intergenic 40.0%
! GATTTGAGACAAGTAGTTGC+TGG - chr4_3:6029045-6029064 Msa0626450:three_prime_UTR 40.0%
TGTCCAAATTATACTCCCTC+CGG + chr4_3:6029601-6029620 None:intergenic 40.0%
!! GGGGAAATTTGTTAGTAGCA+GGG + chr4_3:6029869-6029888 None:intergenic 40.0%
!! AGGGGAAATTTGTTAGTAGC+AGG + chr4_3:6029870-6029889 None:intergenic 40.0%
! AAACGGTGCTTTTCGTTCAA+AGG + chr4_3:6029922-6029941 None:intergenic 40.0%
GCTCCATGGTTCCATTAAAA+CGG + chr4_3:6029939-6029958 None:intergenic 40.0%
TAATATATTCGGCAGCTCCA+TGG + chr4_3:6029953-6029972 None:intergenic 40.0%
! ATGCAAGTGCTTTTCTGATC+CGG - chr4_3:6030078-6030097 Msa0626450:CDS 40.0%
TGACGAGTTAAAACCGTGTT+GGG - chr4_3:6030289-6030308 Msa0626450:CDS 40.0%
AATGGTTTACCTGAGATAGG+TGG + chr4_3:6030499-6030518 None:intergenic 40.0%
! GTTTCTTTTGGTGGAGAAGA+AGG + chr4_3:6030629-6030648 None:intergenic 40.0%
! AATGACACCGTTTCTTTTGG+TGG + chr4_3:6030638-6030657 None:intergenic 40.0%
ACGAAAGAAGAACAGGGAAA+TGG + chr4_3:6031082-6031101 None:intergenic 40.0%
!! TTGGTGACGAAAGAAGAACA+GGG + chr4_3:6031088-6031107 None:intergenic 40.0%
!! ATTGGTGACGAAAGAAGAAC+AGG + chr4_3:6031089-6031108 None:intergenic 40.0%
CAATTACTGCATCTGCTATC+TGG + chr4_3:6031123-6031142 None:intergenic 40.0%
GATAGCAGATGCAGTAATTG+TGG - chr4_3:6031123-6031142 Msa0626450:intron 40.0%
! TGCTTATATTTCGTTCTGGG+GGG - chr4_3:6031282-6031301 Msa0626450:intron 40.0%
TTCATGTCTCAGGAACTTTG+AGG - chr4_3:6031336-6031355 Msa0626450:CDS 40.0%
TGACGTGTTCATGAAAAGCA+TGG - chr4_3:6031372-6031391 Msa0626450:intron 40.0%
! GTGTTCATGAAAAGCATGGA+AGG - chr4_3:6031376-6031395 Msa0626450:intron 40.0%
CTATGTAATCTTCGGTAACC+CGG + chr4_3:6031474-6031493 None:intergenic 40.0%
GTGTCGAGCTATGTAATCTT+CGG + chr4_3:6031482-6031501 None:intergenic 40.0%
!! ACATGATCTTGTCGACTCAA+TGG - chr4_3:6031648-6031667 Msa0626450:intron 40.0%
!! TTGTCGACTCAATGGTTGAA+AGG - chr4_3:6031656-6031675 Msa0626450:intron 40.0%
AGACGGTCAATTTATTGCTG+TGG - chr4_3:6031702-6031721 Msa0626450:intron 40.0%
TTGAACAAGAAAGGTTGCCA+AGG - chr4_3:6031742-6031761 Msa0626450:intron 40.0%
ACAGGTCCTTAAGAGAATCA+AGG + chr4_3:6031891-6031910 None:intergenic 40.0%
! CTCACCTTCGTGTAAGTTTT+AGG + chr4_3:6031916-6031935 None:intergenic 40.0%
!! CGATTTGCTAACTGTGTGAA+TGG + chr4_3:6032027-6032046 None:intergenic 40.0%
TCACACAGTTAGCAAATCGA+TGG - chr4_3:6032028-6032047 Msa0626450:intron 40.0%
GTCGTAGGATTGAGATAAGA+CGG - chr4_3:6032050-6032069 Msa0626450:intron 40.0%
GACTATTCAAATGTGTGTGC+GGG + chr4_3:6032187-6032206 None:intergenic 40.0%
AACTTTGTCTTCTTATCCGC+CGG + chr4_3:6032281-6032300 None:intergenic 40.0%
TACAATAGACCCGAAATTGC+TGG + chr4_3:6032377-6032396 None:intergenic 40.0%
AACGTAGCTGGTAAAAGGAT+CGG - chr4_3:6032401-6032420 Msa0626450:intron 40.0%
! GATGAATCTGAAATTACGGC+TGG + chr4_3:6032452-6032471 None:intergenic 40.0%
TACACTAAGTCAACCCCATT+GGG + chr4_3:6032836-6032855 None:intergenic 40.0%
ATACACTAAGTCAACCCCAT+TGG + chr4_3:6032837-6032856 None:intergenic 40.0%
ATACCACTGAGCTACACCTT+CGG + chr4_3:6029813-6029832 None:intergenic 45.0%
GTAGCTCAGTGGTATCAGTT+TGG - chr4_3:6029818-6029837 Msa0626450:intron 45.0%
GATCGAACCATGGACTCAAT+CGG + chr4_3:6029847-6029866 None:intergenic 45.0%
!! GCACCGTTTTAATGGAACCA+TGG - chr4_3:6029933-6029952 Msa0626450:CDS 45.0%
GTTGCATCATCTGTTGATCC+TGG + chr4_3:6030203-6030222 None:intergenic 45.0%
CTGACGAGTTAAAACCGTGT+TGG - chr4_3:6030288-6030307 Msa0626450:CDS 45.0%
CTTGTGATCCCTGACATTAG+AGG - chr4_3:6031166-6031185 Msa0626450:intron 45.0%
! GTTGGCTTCCTCTAATGTCA+GGG + chr4_3:6031177-6031196 None:intergenic 45.0%
AGAACTAACCTCTTGTCACC+AGG + chr4_3:6031199-6031218 None:intergenic 45.0%
!! GCTTATATTTCGTTCTGGGG+GGG - chr4_3:6031283-6031302 Msa0626450:intron 45.0%
CTGGGGGGGAATATAATTCA+TGG - chr4_3:6031297-6031316 Msa0626450:intron 45.0%
! CATGAAAAGCATGGAAGGAG+TGG - chr4_3:6031381-6031400 Msa0626450:intron 45.0%
AATCTTCGGTAACCCGGTTA+GGG + chr4_3:6031468-6031487 None:intergenic 45.0%
TAATCTTCGGTAACCCGGTT+AGG + chr4_3:6031469-6031488 None:intergenic 45.0%
TGCTAACTGTGTGAATGGGT+GGG + chr4_3:6032022-6032041 None:intergenic 45.0%
TTGCTAACTGTGTGAATGGG+TGG + chr4_3:6032023-6032042 None:intergenic 45.0%
GTTAGCAAATCGATGGTCGT+AGG - chr4_3:6032035-6032054 Msa0626450:intron 45.0%
GATCGTTGGATGAGATCAGA+CGG + chr4_3:6032115-6032134 None:intergenic 45.0%
GTCAGCAGATTAGTGATCGT+TGG + chr4_3:6032129-6032148 None:intergenic 45.0%
! GATCACTAATCTGCTGACTG+TGG - chr4_3:6032131-6032150 Msa0626450:intron 45.0%
TGGTGTGAGTTTGTGATTGC+AGG - chr4_3:6032151-6032170 Msa0626450:intron 45.0%
CTATTGTATGCGAACGTAGC+TGG - chr4_3:6032389-6032408 Msa0626450:intron 45.0%
ATGCGAACGTAGCTGGTAAA+AGG - chr4_3:6032396-6032415 Msa0626450:intron 45.0%
ATACCACTGAGCTACACCTT+CGG + chr4_3:6029813-6029832 None:intergenic 45.0%
GTAGCTCAGTGGTATCAGTT+TGG - chr4_3:6029818-6029837 Msa0626450:intron 45.0%
GATCGAACCATGGACTCAAT+CGG + chr4_3:6029847-6029866 None:intergenic 45.0%
!! GCACCGTTTTAATGGAACCA+TGG - chr4_3:6029933-6029952 Msa0626450:CDS 45.0%
GTTGCATCATCTGTTGATCC+TGG + chr4_3:6030203-6030222 None:intergenic 45.0%
CTGACGAGTTAAAACCGTGT+TGG - chr4_3:6030288-6030307 Msa0626450:CDS 45.0%
CTTGTGATCCCTGACATTAG+AGG - chr4_3:6031166-6031185 Msa0626450:intron 45.0%
! GTTGGCTTCCTCTAATGTCA+GGG + chr4_3:6031177-6031196 None:intergenic 45.0%
AGAACTAACCTCTTGTCACC+AGG + chr4_3:6031199-6031218 None:intergenic 45.0%
!! GCTTATATTTCGTTCTGGGG+GGG - chr4_3:6031283-6031302 Msa0626450:intron 45.0%
CTGGGGGGGAATATAATTCA+TGG - chr4_3:6031297-6031316 Msa0626450:intron 45.0%
! CATGAAAAGCATGGAAGGAG+TGG - chr4_3:6031381-6031400 Msa0626450:intron 45.0%
AATCTTCGGTAACCCGGTTA+GGG + chr4_3:6031468-6031487 None:intergenic 45.0%
TAATCTTCGGTAACCCGGTT+AGG + chr4_3:6031469-6031488 None:intergenic 45.0%
TGCTAACTGTGTGAATGGGT+GGG + chr4_3:6032022-6032041 None:intergenic 45.0%
TTGCTAACTGTGTGAATGGG+TGG + chr4_3:6032023-6032042 None:intergenic 45.0%
GTTAGCAAATCGATGGTCGT+AGG - chr4_3:6032035-6032054 Msa0626450:intron 45.0%
GATCGTTGGATGAGATCAGA+CGG + chr4_3:6032115-6032134 None:intergenic 45.0%
GTCAGCAGATTAGTGATCGT+TGG + chr4_3:6032129-6032148 None:intergenic 45.0%
! GATCACTAATCTGCTGACTG+TGG - chr4_3:6032131-6032150 Msa0626450:intron 45.0%
TGGTGTGAGTTTGTGATTGC+AGG - chr4_3:6032151-6032170 Msa0626450:intron 45.0%
CTATTGTATGCGAACGTAGC+TGG - chr4_3:6032389-6032408 Msa0626450:intron 45.0%
ATGCGAACGTAGCTGGTAAA+AGG - chr4_3:6032396-6032415 Msa0626450:intron 45.0%
! GGACCGGAGGGAGTATAATT+TGG - chr4_3:6029595-6029614 Msa0626450:intron 50.0%
TACCACTGAGCTACACCTTC+GGG + chr4_3:6029812-6029831 None:intergenic 50.0%
! TTGGACACCGATTGAGTCCA+TGG - chr4_3:6029837-6029856 Msa0626450:intron 50.0%
TAGTAGCAGGGATCGAACCA+TGG + chr4_3:6029857-6029876 None:intergenic 50.0%
TCGAGGAAGCCATATGCGTT+TGG - chr4_3:6030357-6030376 Msa0626450:CDS 50.0%
TAGGTGGTACTCTGGACCAT+TGG + chr4_3:6030483-6030502 None:intergenic 50.0%
! TCCAGAGTACCACCTATCTC+AGG - chr4_3:6030487-6030506 Msa0626450:intron 50.0%
ACCTGAGATAGGTGGTACTC+TGG + chr4_3:6030491-6030510 None:intergenic 50.0%
!! GGTTGGCTTCCTCTAATGTC+AGG + chr4_3:6031178-6031197 None:intergenic 50.0%
GACATTAGAGGAAGCCAACC+TGG - chr4_3:6031178-6031197 Msa0626450:intron 50.0%
CTAACCTCTTGTCACCAGGT+TGG + chr4_3:6031195-6031214 None:intergenic 50.0%
CATGGAAGGAGTGGTCAAAG+TGG - chr4_3:6031390-6031409 Msa0626450:intron 50.0%
! TGGAAGTTTGGAGTTGCAGC+CGG - chr4_3:6031621-6031640 Msa0626450:intron 50.0%
CACATGAGCACACACACACA+CGG - chr4_3:6031972-6031991 Msa0626450:intron 50.0%
ACATGAGCACACACACACAC+GGG - chr4_3:6031973-6031992 Msa0626450:intron 50.0%
ATGGGTGGGATTGTAACTGC+AGG + chr4_3:6032008-6032027 None:intergenic 50.0%
GTTGCAGGAGTCAATCATGC+CGG - chr4_3:6032259-6032278 Msa0626450:intron 50.0%
! GCTGGTAAAAGGATCGGTTC+TGG - chr4_3:6032407-6032426 Msa0626450:intron 50.0%
! TTTGAAACCCGTGCCTTGCA+CGG - chr4_3:6032883-6032902 Msa0626450:five_prime_UTR 50.0%
! AAGTTTTCCCGTGCAAGGCA+CGG + chr4_3:6032894-6032913 None:intergenic 50.0%
! AGCACAAGTTTTCCCGTGCA+AGG + chr4_3:6032899-6032918 None:intergenic 50.0%
! GGACCGGAGGGAGTATAATT+TGG - chr4_3:6029595-6029614 Msa0626450:intron 50.0%
TACCACTGAGCTACACCTTC+GGG + chr4_3:6029812-6029831 None:intergenic 50.0%
! TTGGACACCGATTGAGTCCA+TGG - chr4_3:6029837-6029856 Msa0626450:intron 50.0%
TAGTAGCAGGGATCGAACCA+TGG + chr4_3:6029857-6029876 None:intergenic 50.0%
TCGAGGAAGCCATATGCGTT+TGG - chr4_3:6030357-6030376 Msa0626450:CDS 50.0%
TAGGTGGTACTCTGGACCAT+TGG + chr4_3:6030483-6030502 None:intergenic 50.0%
! TCCAGAGTACCACCTATCTC+AGG - chr4_3:6030487-6030506 Msa0626450:intron 50.0%
ACCTGAGATAGGTGGTACTC+TGG + chr4_3:6030491-6030510 None:intergenic 50.0%
!! GGTTGGCTTCCTCTAATGTC+AGG + chr4_3:6031178-6031197 None:intergenic 50.0%
GACATTAGAGGAAGCCAACC+TGG - chr4_3:6031178-6031197 Msa0626450:intron 50.0%
CTAACCTCTTGTCACCAGGT+TGG + chr4_3:6031195-6031214 None:intergenic 50.0%
CATGGAAGGAGTGGTCAAAG+TGG - chr4_3:6031390-6031409 Msa0626450:intron 50.0%
! TGGAAGTTTGGAGTTGCAGC+CGG - chr4_3:6031621-6031640 Msa0626450:intron 50.0%
CACATGAGCACACACACACA+CGG - chr4_3:6031972-6031991 Msa0626450:intron 50.0%
ACATGAGCACACACACACAC+GGG - chr4_3:6031973-6031992 Msa0626450:intron 50.0%
ATGGGTGGGATTGTAACTGC+AGG + chr4_3:6032008-6032027 None:intergenic 50.0%
GTTGCAGGAGTCAATCATGC+CGG - chr4_3:6032259-6032278 Msa0626450:intron 50.0%
! GCTGGTAAAAGGATCGGTTC+TGG - chr4_3:6032407-6032426 Msa0626450:intron 50.0%
! TTTGAAACCCGTGCCTTGCA+CGG - chr4_3:6032883-6032902 Msa0626450:five_prime_UTR 50.0%
! AAGTTTTCCCGTGCAAGGCA+CGG + chr4_3:6032894-6032913 None:intergenic 50.0%
! AGCACAAGTTTTCCCGTGCA+AGG + chr4_3:6032899-6032918 None:intergenic 50.0%
GTTTGTCCTTGTGTCCCCGA+AGG - chr4_3:6029794-6029813 Msa0626450:intron 55.0%
ACCACTGAGCTACACCTTCG+GGG + chr4_3:6029811-6029830 None:intergenic 55.0%
CCAGACGGCTTAACCCAACA+CGG + chr4_3:6030305-6030324 None:intergenic 55.0%
TGTTGGGTTAAGCCGTCTGG+AGG - chr4_3:6030305-6030324 Msa0626450:CDS 55.0%
TCGATGGTTGGCAGACGAAG+TGG - chr4_3:6030424-6030443 Msa0626450:CDS 55.0%
GACGAAGTGGAGCAGACAGA+CGG - chr4_3:6030437-6030456 Msa0626450:CDS 55.0%
ACGAAGTGGAGCAGACAGAC+GGG - chr4_3:6030438-6030457 Msa0626450:CDS 55.0%
GAAGCCAACCTGGTGACAAG+AGG - chr4_3:6031188-6031207 Msa0626450:intron 55.0%
CTGCTGTGAAGGTCCCTAAC+CGG - chr4_3:6031452-6031471 Msa0626450:intron 55.0%
TGCTGTGAAGGTCCCTAACC+GGG - chr4_3:6031453-6031472 Msa0626450:intron 55.0%
AGCACACACACACACGGGTT+TGG - chr4_3:6031978-6031997 Msa0626450:intron 55.0%
TTGAAACCCGTGCCTTGCAC+GGG - chr4_3:6032884-6032903 Msa0626450:five_prime_UTR 55.0%
! AGTTTTCCCGTGCAAGGCAC+GGG + chr4_3:6032893-6032912 None:intergenic 55.0%
GTTTGTCCTTGTGTCCCCGA+AGG - chr4_3:6029794-6029813 Msa0626450:intron 55.0%
ACCACTGAGCTACACCTTCG+GGG + chr4_3:6029811-6029830 None:intergenic 55.0%
CCAGACGGCTTAACCCAACA+CGG + chr4_3:6030305-6030324 None:intergenic 55.0%
TGTTGGGTTAAGCCGTCTGG+AGG - chr4_3:6030305-6030324 Msa0626450:CDS 55.0%
TCGATGGTTGGCAGACGAAG+TGG - chr4_3:6030424-6030443 Msa0626450:CDS 55.0%
GACGAAGTGGAGCAGACAGA+CGG - chr4_3:6030437-6030456 Msa0626450:CDS 55.0%
ACGAAGTGGAGCAGACAGAC+GGG - chr4_3:6030438-6030457 Msa0626450:CDS 55.0%
GAAGCCAACCTGGTGACAAG+AGG - chr4_3:6031188-6031207 Msa0626450:intron 55.0%
CTGCTGTGAAGGTCCCTAAC+CGG - chr4_3:6031452-6031471 Msa0626450:intron 55.0%
TGCTGTGAAGGTCCCTAACC+GGG - chr4_3:6031453-6031472 Msa0626450:intron 55.0%
AGCACACACACACACGGGTT+TGG - chr4_3:6031978-6031997 Msa0626450:intron 55.0%
TTGAAACCCGTGCCTTGCAC+GGG - chr4_3:6032884-6032903 Msa0626450:five_prime_UTR 55.0%
! AGTTTTCCCGTGCAAGGCAC+GGG + chr4_3:6032893-6032912 None:intergenic 55.0%
GCTACACCTTCGGGGACACA+AGG + chr4_3:6029803-6029822 None:intergenic 60.0%
! TCCCCGAAGGTGTAGCTCAG+TGG - chr4_3:6029807-6029826 Msa0626450:intron 60.0%
CCGTGTTGGGTTAAGCCGTC+TGG - chr4_3:6030302-6030321 Msa0626450:CDS 60.0%
GCAGGAGTCAATCATGCCGG+CGG - chr4_3:6032262-6032281 Msa0626450:intron 60.0%
GCTACACCTTCGGGGACACA+AGG + chr4_3:6029803-6029822 None:intergenic 60.0%
! TCCCCGAAGGTGTAGCTCAG+TGG - chr4_3:6029807-6029826 Msa0626450:intron 60.0%
CCGTGTTGGGTTAAGCCGTC+TGG - chr4_3:6030302-6030321 Msa0626450:CDS 60.0%
GCAGGAGTCAATCATGCCGG+CGG - chr4_3:6032262-6032281 Msa0626450:intron 60.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 6028854 6032954 6028854 ID=Msa0626450;Name=Msa0626450
chr4_3 mRNA 6028854 6032954 6028854 ID=Msa0626450-mRNA-1;Parent=Msa0626450;Name=Msa0626450-mRNA-1;_AED=0.07;_eAED=0.07;_QI=182|1|1|1|1|1|6|410|419
chr4_3 exon 6028854 6029542 6028854 ID=Msa0626450-mRNA-1:exon:1770;Parent=Msa0626450-mRNA-1
chr4_3 exon 6029878 6030460 6029878 ID=Msa0626450-mRNA-1:exon:1769;Parent=Msa0626450-mRNA-1
chr4_3 exon 6030599 6030684 6030599 ID=Msa0626450-mRNA-1:exon:1768;Parent=Msa0626450-mRNA-1
chr4_3 exon 6031300 6031370 6031300 ID=Msa0626450-mRNA-1:exon:1767;Parent=Msa0626450-mRNA-1
chr4_3 exon 6031482 6031620 6031482 ID=Msa0626450-mRNA-1:exon:1766;Parent=Msa0626450-mRNA-1
chr4_3 exon 6032671 6032954 6032671 ID=Msa0626450-mRNA-1:exon:1765;Parent=Msa0626450-mRNA-1
chr4_3 five_prime_UTR 6032773 6032954 6032773 ID=Msa0626450-mRNA-1:five_prime_utr;Parent=Msa0626450-mRNA-1
chr4_3 CDS 6032671 6032772 6032671 ID=Msa0626450-mRNA-1:cds;Parent=Msa0626450-mRNA-1
chr4_3 CDS 6031482 6031620 6031482 ID=Msa0626450-mRNA-1:cds;Parent=Msa0626450-mRNA-1
chr4_3 CDS 6031300 6031370 6031300 ID=Msa0626450-mRNA-1:cds;Parent=Msa0626450-mRNA-1
chr4_3 CDS 6030599 6030684 6030599 ID=Msa0626450-mRNA-1:cds;Parent=Msa0626450-mRNA-1
chr4_3 CDS 6029878 6030460 6029878 ID=Msa0626450-mRNA-1:cds;Parent=Msa0626450-mRNA-1
chr4_3 CDS 6029264 6029542 6029264 ID=Msa0626450-mRNA-1:cds;Parent=Msa0626450-mRNA-1
chr4_3 three_prime_UTR 6028854 6029263 6028854 ID=Msa0626450-mRNA-1:three_prime_utr;Parent=Msa0626450-mRNA-1
Gene Sequence

>Msa0626450

ATGGGTTTTGATTTGAGACAAGTAGTTGCTGGTATCCTCACTCTCACTATGTTTGTTATGCTTATCCATATGATTAAAAGAGACCATTTTGATTCTGTTCAAGATAATAAATTTCCAGGATCAACAGATGATGCAACCTATGAAAATGTAAAGATGGATACTACACATGTAAGAAAGAATATAGGGCTTTGGAAGGGAGATACTGACGAGTTAAAACCGTGTTGGGTTAAGCCGTCTGGAGACGAAGTGGAGCAGACAGACGGGTTTGTTACCTTTTCATTAACCAATGGTCCAGAGTACCACCTATCTCAGATAGCAGATGCAGTAATTGTGGCTAGATATCTCGGAGCATCACTTGTGATCCCTGACATTAGAGGAAGCCAACCTGGTGACAAGAGGAACTTTGAGGATATTTATGATGTTGACGTGTTCATGAAAAGCATGGAAGGAGTGGTCAAAGTGGTAAAAGATCTTCCTTCTCATGTAACAACTAAAAAAATTGCTGCTGTGAAGGTCCCTAACCGGGTTACCGAAGATTACATAGCTCGACACGTCGAACCAATTTATAGATCAAAGGGAAACGTAAGGCTAGCGACTTACTTTCCTTCAATAAACATGAGAAAGTCAGGGAAAAAAGGTGACACTGATTCCATTGCATGCTTAGCAATGTATGGAAGTTTGGAGTTGCAGCCGGAAATACATGATCTTGTCGACTCAATGGTTGAAAGGCTTAGAACTTTAAGCCGAAAATCAGACGGTCAATTTATTGCTGTGGATTTGAGAGTTGAGATGTTGAACAAGAAAGGTTGCCAAGGAAATGATGATAATGATGGAGAGAAGACCTGTTTCAATGCACAAGAGATTGCAGTGTTTTTGAGAAAGATTGGTATTGATAAGGATACCACAATTTATTTGACACAATCAAGGTGGGATGATAGCCTTGATTCTCTTAAGGACCTGTTTCCTAAAACTTACACGAAGGAGTCAATCATGCCGGCGGATAAGAAGACAAAGTTCCTAGATTCTAAAGATTCTGAATTGGAGAATGTGATTGACTTTTACATTAGTACCGAGAGTGATGTTTTTGTACCAGCAATTTCGGGTCTATTGTATGCGAACGTAGCTGGTAAAAGGATCGGTTCTGGTAAAACACAAATATTGGTTCCAGCCGTAATTTCAGATTCATCGGCTTCAGCAACAAGTTTCTTGTCCCCTTATATCTCCAAGAAAAACCACTTTGCATATTCTTGTTATTGTTAG

Protein sequence

>Msa0626450

MGFDLRQVVAGILTLTMFVMLIHMIKRDHFDSVQDNKFPGSTDDATYENVKMDTTHVRKNIGLWKGDTDELKPCWVKPSGDEVEQTDGFVTFSLTNGPEYHLSQIADAVIVARYLGASLVIPDIRGSQPGDKRNFEDIYDVDVFMKSMEGVVKVVKDLPSHVTTKKIAAVKVPNRVTEDYIARHVEPIYRSKGNVRLATYFPSINMRKSGKKGDTDSIACLAMYGSLELQPEIHDLVDSMVERLRTLSRKSDGQFIAVDLRVEMLNKKGCQGNDDNDGEKTCFNAQEIAVFLRKIGIDKDTTIYLTQSRWDDSLDSLKDLFPKTYTKESIMPADKKTKFLDSKDSELENVIDFYISTESDVFVPAISGLLYANVAGKRIGSGKTQILVPAVISDSSASATSFLSPYISKKNHFAYSCYC*