AlfalfaGEDB | Msa0626450

M. sativa cultivar zhongmu-4 / Msa0626450

KEGG: -
GO: GO:0000030 GO:0000271 GO:0003674 GO:0003824 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0005975 GO:0005976 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009505 GO:0009664 GO:0009832 GO:0009987 GO:0010383 GO:0010393 GO:0010412 GO:0012505 GO:0016043 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0017144 GO:0019187 GO:0030312 GO:0031410 GO:0031982 GO:0031984 GO:0033692 GO:0034637 GO:0034645 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044036 GO:0044038 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045229 GO:0045488 GO:0045489 GO:0051753 GO:0052325 GO:0052546 GO:0070085 GO:0070589 GO:0070592 GO:0071554 GO:0071555 GO:0071669 GO:0071704 GO:0071840 GO:0071944 GO:0097502 GO:0097708 GO:0098791 GO:1901576
PFAM: PF10250.12

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0626450	XP_013454584.1	99.045	419	4	0	1	419	1	419	0.0	857

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0626450	sp\|Q9LU40\|MSR1_ARATH	63.208	424	149	3	1	419	1	422	0.0	561

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000050	Msa0626450	0.857500	1.564473e-62	-8.615850e-47
Msa0000190	Msa0626450	0.807705	4.435625e-50	-8.615850e-47
Msa0000560	Msa0626450	0.811743	6.010674e-51	-8.615850e-47
Msa0000880	Msa0626450	0.812937	3.297650e-51	-8.615850e-47
Msa0001940	Msa0626450	0.808921	2.442300e-50	-8.615850e-47
Msa0001960	Msa0626450	0.830522	2.801364e-55	-8.615850e-47
Msa0002460	Msa0626450	0.802018	6.845999e-49	-8.615850e-47
Msa0002580	Msa0626450	0.825747	3.959331e-54	-8.615850e-47
Msa0002680	Msa0626450	0.848296	6.709646e-60	-8.615850e-47
Msa0002710	Msa0626450	0.844274	8.365247e-59	-8.615850e-47

Showing 1 to 10 of 1,329 entries

Previous1 2 3 4 5…133Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0626450	MtrunA17_Chr4g0002361	99.045	419	4	0	1	419	1	419	0.0	857
Msa0626450	MtrunA17_Chr2g0298881	52.247	356	167	3	65	419	13	366	1.12e-137	398
Msa0626450	MtrunA17_Chr5g0399311	28.739	341	197	12	84	389	122	451	3.95e-27	113
Msa0626450	MtrunA17_Chr3g0143821	27.714	350	201	11	78	389	103	438	8.58e-27	112
Msa0626450	MtrunA17_Chr5g0424241	27.011	348	204	9	87	389	158	500	3.53e-26	110
Msa0626450	MtrunA17_Chr4g0042711	26.023	342	203	12	86	388	97	427	1.66e-24	105
Msa0626450	MtrunA17_Chr5g0417871	27.190	331	192	14	86	378	85	404	1.67e-24	105
Msa0626450	MtrunA17_Chr4g0056061	27.729	339	199	12	86	389	108	435	1.68e-24	105
Msa0626450	MtrunA17_Chr3g0129981	27.548	363	195	15	63	378	89	430	2.71e-24	105
Msa0626450	MtrunA17_Chr3g0132951	25.469	373	207	13	72	378	85	452	5.28e-24	103

Showing 1 to 10 of 24 entries

Previous1 2 3Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0626450	AT3G21190.1	63.208	424	149	3	1	419	1	422	0.0	561
Msa0626450	AT1G51630.1	61.882	425	154	4	1	419	1	423	0.0	553
Msa0626450	AT1G38065.2	26.648	349	206	9	86	389	26	369	1.63e-27	114
Msa0626450	AT1G38065.1	26.648	349	206	9	86	389	36	379	1.88e-27	114
Msa0626450	AT1G38131.1	26.648	349	206	9	86	389	155	498	3.47e-27	114
Msa0626450	AT5G64600.1	27.586	406	231	14	26	389	60	444	7.49e-27	112
Msa0626450	AT1G20550.1	27.520	367	215	13	78	411	101	449	2.55e-25	108
Msa0626450	AT1G76270.1	28.529	340	200	12	83	389	103	432	7.38e-25	107
Msa0626450	AT4G38390.1	26.239	343	210	10	81	389	118	451	3.65e-23	102
Msa0626450	AT4G16650.2	28.446	341	198	11	84	389	120	449	5.33e-22	98.6

Showing 1 to 10 of 27 entries

Previous1 2 3Next

Find 110 sgRNAs with CRISPR-Local

Find 530 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGAAAAGAAGAAAGTCC+AGG	0.521014	4_3:-6032922	Msa0626450:five_prime_UTR
AAAGAATATAGGGCTTTGGA+AGG	0.536631	4_3:-6031527	Msa0626450:CDS
AACCTATGAAAATGTAAAGA+TGG	0.530585	4_3:-6031566	Msa0626450:CDS
AACGTAGCTGGTAAAAGGAT+CGG	0.594479	4_3:-6029385	Msa0626450:CDS
AACTTTGTCTTCTTATCCGC+CGG	0.478466	4_3:+6029508	None:intergenic
AAGAATATAGGGCTTTGGAA+GGG	0.632512	4_3:-6031526	Msa0626450:CDS
AATAACAAGAATATGCAAAG+TGG	0.644534	4_3:+6029269	None:intergenic
AATCTCTTGTGCATTGAAAC+AGG	0.427632	4_3:+6029995	None:intergenic
AATCTTCGGTAACCCGGTTA+GGG	0.507255	4_3:+6030321	None:intergenic
AATGGTTTACCTGAGATAGG+TGG	0.671281	4_3:+6031290	None:intergenic

Showing 1 to 10 of 110 entries

Previous1 2 3 4 5…11Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AAAAGAAAAGAAGAAAGTCC+AGG	-	chr4_3:6028864-6028883	Msa0626450:three_prime_UTR	30.0%
AGAAGAAGAAAAAGAAGAGA+AGG	+	chr4_3:6028989-6029008	None:intergenic	30.0%
AGATCCTTAGTTTATAGACT+AGG	-	chr4_3:6029408-6029427	Msa0626450:CDS	30.0%
ATCTCCTAGTCTATAAACTA+AGG	+	chr4_3:6029415-6029434	None:intergenic	30.0%
TTGTTATATATAGGACTGGA+GGG	+	chr4_3:6029519-6029538	None:intergenic	30.0%
TAAGAAAGAATATAGGGCTT+TGG	-	chr4_3:6030255-6030274	Msa0626450:CDS	30.0%
AAATACAATCCAAACGCATA+TGG	+	chr4_3:6030369-6030388	None:intergenic	30.0%
CATCTAAGGGAAAATATCTT+TGG	+	chr4_3:6030602-6030621	None:intergenic	30.0%
AGAAGAAGGAAATCATCTAA+GGG	+	chr4_3:6030615-6030634	None:intergenic	30.0%
TGTATATTTAGGTGGATGTT+TGG	-	chr4_3:6030660-6030679	Msa0626450:CDS	30.0%

Showing 1 to 10 of 530 entries

Previous1 2 3 4 5…53Next

Chromosome	Type	Strat	End	Strand	Name
chr4_3	gene	6028854	6032954	6028854	ID=Msa0626450;Name=Msa0626450
chr4_3	mRNA	6028854	6032954	6028854	ID=Msa0626450-mRNA-1;Parent=Msa0626450;Name=Msa0626450-mRNA-1;_AED=0.07;_eAED=0.07;_QI=182\|1\|1\|1\|1\|1\|6\|410\|419
chr4_3	exon	6028854	6029542	6028854	ID=Msa0626450-mRNA-1:exon:1770;Parent=Msa0626450-mRNA-1
chr4_3	exon	6029878	6030460	6029878	ID=Msa0626450-mRNA-1:exon:1769;Parent=Msa0626450-mRNA-1
chr4_3	exon	6030599	6030684	6030599	ID=Msa0626450-mRNA-1:exon:1768;Parent=Msa0626450-mRNA-1
chr4_3	exon	6031300	6031370	6031300	ID=Msa0626450-mRNA-1:exon:1767;Parent=Msa0626450-mRNA-1
chr4_3	exon	6031482	6031620	6031482	ID=Msa0626450-mRNA-1:exon:1766;Parent=Msa0626450-mRNA-1
chr4_3	exon	6032671	6032954	6032671	ID=Msa0626450-mRNA-1:exon:1765;Parent=Msa0626450-mRNA-1
chr4_3	five_prime_UTR	6032773	6032954	6032773	ID=Msa0626450-mRNA-1:five_prime_utr;Parent=Msa0626450-mRNA-1
chr4_3	CDS	6032671	6032772	6032671	ID=Msa0626450-mRNA-1:cds;Parent=Msa0626450-mRNA-1
chr4_3	CDS	6031482	6031620	6031482	ID=Msa0626450-mRNA-1:cds;Parent=Msa0626450-mRNA-1
chr4_3	CDS	6031300	6031370	6031300	ID=Msa0626450-mRNA-1:cds;Parent=Msa0626450-mRNA-1
chr4_3	CDS	6030599	6030684	6030599	ID=Msa0626450-mRNA-1:cds;Parent=Msa0626450-mRNA-1
chr4_3	CDS	6029878	6030460	6029878	ID=Msa0626450-mRNA-1:cds;Parent=Msa0626450-mRNA-1
chr4_3	CDS	6029264	6029542	6029264	ID=Msa0626450-mRNA-1:cds;Parent=Msa0626450-mRNA-1
chr4_3	three_prime_UTR	6028854	6029263	6028854	ID=Msa0626450-mRNA-1:three_prime_utr;Parent=Msa0626450-mRNA-1

Gene Sequence

>Msa0626450

ATGGGTTTTGATTTGAGACAAGTAGTTGCTGGTATCCTCACTCTCACTATGTTTGTTATGCTTATCCATATGATTAAAAGAGACCATTTTGATTCTGTTCAAGATAATAAATTTCCAGGATCAACAGATGATGCAACCTATGAAAATGTAAAGATGGATACTACACATGTAAGAAAGAATATAGGGCTTTGGAAGGGAGATACTGACGAGTTAAAACCGTGTTGGGTTAAGCCGTCTGGAGACGAAGTGGAGCAGACAGACGGGTTTGTTACCTTTTCATTAACCAATGGTCCAGAGTACCACCTATCTCAGATAGCAGATGCAGTAATTGTGGCTAGATATCTCGGAGCATCACTTGTGATCCCTGACATTAGAGGAAGCCAACCTGGTGACAAGAGGAACTTTGAGGATATTTATGATGTTGACGTGTTCATGAAAAGCATGGAAGGAGTGGTCAAAGTGGTAAAAGATCTTCCTTCTCATGTAACAACTAAAAAAATTGCTGCTGTGAAGGTCCCTAACCGGGTTACCGAAGATTACATAGCTCGACACGTCGAACCAATTTATAGATCAAAGGGAAACGTAAGGCTAGCGACTTACTTTCCTTCAATAAACATGAGAAAGTCAGGGAAAAAAGGTGACACTGATTCCATTGCATGCTTAGCAATGTATGGAAGTTTGGAGTTGCAGCCGGAAATACATGATCTTGTCGACTCAATGGTTGAAAGGCTTAGAACTTTAAGCCGAAAATCAGACGGTCAATTTATTGCTGTGGATTTGAGAGTTGAGATGTTGAACAAGAAAGGTTGCCAAGGAAATGATGATAATGATGGAGAGAAGACCTGTTTCAATGCACAAGAGATTGCAGTGTTTTTGAGAAAGATTGGTATTGATAAGGATACCACAATTTATTTGACACAATCAAGGTGGGATGATAGCCTTGATTCTCTTAAGGACCTGTTTCCTAAAACTTACACGAAGGAGTCAATCATGCCGGCGGATAAGAAGACAAAGTTCCTAGATTCTAAAGATTCTGAATTGGAGAATGTGATTGACTTTTACATTAGTACCGAGAGTGATGTTTTTGTACCAGCAATTTCGGGTCTATTGTATGCGAACGTAGCTGGTAAAAGGATCGGTTCTGGTAAAACACAAATATTGGTTCCAGCCGTAATTTCAGATTCATCGGCTTCAGCAACAAGTTTCTTGTCCCCTTATATCTCCAAGAAAAACCACTTTGCATATTCTTGTTATTGTTAG

Protein sequence

>Msa0626450

MGFDLRQVVAGILTLTMFVMLIHMIKRDHFDSVQDNKFPGSTDDATYENVKMDTTHVRKNIGLWKGDTDELKPCWVKPSGDEVEQTDGFVTFSLTNGPEYHLSQIADAVIVARYLGASLVIPDIRGSQPGDKRNFEDIYDVDVFMKSMEGVVKVVKDLPSHVTTKKIAAVKVPNRVTEDYIARHVEPIYRSKGNVRLATYFPSINMRKSGKKGDTDSIACLAMYGSLELQPEIHDLVDSMVERLRTLSRKSDGQFIAVDLRVEMLNKKGCQGNDDNDGEKTCFNAQEIAVFLRKIGIDKDTTIYLTQSRWDDSLDSLKDLFPKTYTKESIMPADKKTKFLDSKDSELENVIDFYISTESDVFVPAISGLLYANVAGKRIGSGKTQILVPAVISDSSASATSFLSPYISKKNHFAYSCYC*