AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0083240

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0083240 MtrunA17_Chr1g0196661 92.444 225 17 0 225 449 1 225 1.63e-152 432
Msa0083240 MtrunA17_Chr1g0196661 77.130 223 50 1 7 229 1 222 3.14e-125 362
Msa0083240 MtrunA17_Chr1g0196691 93.088 217 15 0 1 217 20 236 1.02e-147 420
Msa0083240 MtrunA17_Chr1g0196691 80.631 222 42 1 224 444 25 246 9.61e-130 375
Msa0083240 MtrunA17_Chr1g0196721 88.372 215 25 0 228 442 3 217 1.56e-136 391
Msa0083240 MtrunA17_Chr1g0196721 79.327 208 42 1 10 217 3 209 7.39e-119 346
Msa0083240 MtrunA17_Chr1g0196711 82.222 225 40 0 225 449 1 225 6.24e-134 384
Msa0083240 MtrunA17_Chr1g0196711 74.888 223 55 1 7 229 1 222 1.13e-119 348
Msa0083240 MtrunA17_Chr4g0029341 69.302 215 66 0 227 441 4 218 3.92e-108 318
Msa0083240 MtrunA17_Chr4g0029341 63.158 209 76 1 9 217 4 211 1.47e-94 284
Msa0083240 MtrunA17_Chr1g0212301 47.664 214 109 2 225 436 1 213 1.12e-62 202
Msa0083240 MtrunA17_Chr1g0212301 43.868 212 117 2 7 217 1 211 1.04e-57 189
Msa0083240 MtrunA17_Chr1g0196771 49.057 212 105 2 225 435 1 210 9.29e-62 200
Msa0083240 MtrunA17_Chr1g0196771 45.972 211 112 1 7 217 1 209 8.81e-60 195
Msa0083240 MtrunA17_Chr3g0132581 46.667 210 108 2 225 432 1 208 6.34e-60 195
Msa0083240 MtrunA17_Chr3g0132581 43.318 217 116 4 7 220 1 213 8.09e-55 182
Msa0083240 MtrunA17_Chr5g0417011 42.202 218 122 2 226 439 6 223 6.52e-55 182
Msa0083240 MtrunA17_Chr5g0417011 39.815 216 123 4 6 216 4 217 1.01e-50 171
Msa0083240 MtrunA17_Chr4g0008791 42.222 225 123 3 226 449 6 224 3.32e-54 180
Msa0083240 MtrunA17_Chr4g0008791 41.364 220 124 3 8 226 6 221 4.29e-52 175
Msa0083240 MtrunA17_Chr4g0008781 43.243 222 122 3 221 441 2 220 1.58e-53 178
Msa0083240 MtrunA17_Chr4g0008781 41.935 217 121 3 9 224 8 220 5.94e-53 177
Msa0083240 MtrunA17_Chr7g0240631 43.182 220 119 4 228 445 8 223 6.28e-53 177
Msa0083240 MtrunA17_Chr7g0240631 40.670 209 119 3 10 217 8 212 8.74e-49 166
Msa0083240 MtrunA17_Chr7g0240641 43.636 220 118 4 228 445 8 223 1.85e-52 176
Msa0083240 MtrunA17_Chr7g0240641 41.148 209 118 3 10 217 8 212 4.04e-49 167
Msa0083240 MtrunA17_Chr6g0483141 41.778 225 127 3 225 448 1 222 6.79e-52 174
Msa0083240 MtrunA17_Chr6g0483141 40.758 211 122 2 7 217 1 208 9.90e-51 171
Msa0083240 MtrunA17_Chr2g0312771 43.519 216 117 3 227 441 4 215 8.45e-52 174
Msa0083240 MtrunA17_Chr2g0312771 41.509 212 114 6 9 217 4 208 2.39e-43 152
Msa0083240 MtrunA17_Chr7g0240681 43.119 218 119 2 227 442 7 221 2.80e-51 172
Msa0083240 MtrunA17_Chr7g0240681 42.654 211 115 3 9 217 7 213 5.23e-51 172
Msa0083240 MtrunA17_Chr7g0240511 43.439 221 116 4 227 446 7 219 2.92e-51 172
Msa0083240 MtrunA17_Chr7g0240511 40.724 221 123 3 9 229 7 219 7.79e-48 163
Msa0083240 MtrunA17_Chr2g0312751 43.810 210 113 3 227 435 4 209 3.46e-51 172
Msa0083240 MtrunA17_Chr2g0312751 39.726 219 126 5 9 226 4 217 2.92e-42 149
Msa0083240 MtrunA17_Chr8g0379581 43.128 211 118 1 227 437 5 213 3.46e-51 172
Msa0083240 MtrunA17_Chr8g0379581 40.758 211 118 3 9 217 5 210 8.03e-46 158
Msa0083240 MtrunA17_Chr2g0312721 44.076 211 113 3 227 436 4 210 5.51e-51 172
Msa0083240 MtrunA17_Chr2g0312721 39.904 208 117 5 9 214 4 205 3.10e-43 151
Msa0083240 MtrunA17_Chr7g0240691 42.857 217 117 4 224 437 34 246 6.06e-51 173
Msa0083240 MtrunA17_Chr7g0240691 39.631 217 119 3 6 217 34 243 7.50e-48 165
Msa0083240 MtrunA17_Chr8g0379561 41.553 219 126 1 227 445 6 222 1.72e-49 168
Msa0083240 MtrunA17_Chr8g0379561 41.148 209 120 2 9 217 6 211 1.63e-44 155
Msa0083240 MtrunA17_Chr7g0240561 41.441 222 124 4 227 446 7 224 2.08e-49 167
Msa0083240 MtrunA17_Chr7g0240561 40.566 212 117 4 9 217 7 212 6.22e-47 161
Msa0083240 MtrunA17_Chr2g0312811 41.509 212 117 4 227 435 4 211 3.37e-49 167
Msa0083240 MtrunA17_Chr2g0312811 36.916 214 123 6 9 217 4 210 3.84e-39 140
Msa0083240 MtrunA17_Chr2g0312731 41.262 206 116 3 227 431 4 205 3.38e-49 167
Msa0083240 MtrunA17_Chr2g0312731 38.835 206 120 5 9 213 4 204 8.63e-41 145
Msa0083240 MtrunA17_Chr7g0240611 40.625 224 125 3 223 445 3 219 1.16e-48 166
Msa0083240 MtrunA17_Chr7g0240611 39.908 218 124 2 9 226 7 217 8.09e-48 163
Msa0083240 MtrunA17_Chr7g0240671 42.857 210 112 3 228 436 5 207 1.84e-48 165
Msa0083240 MtrunA17_Chr7g0240671 43.750 208 110 3 10 217 5 205 4.10e-48 164
Msa0083240 MtrunA17_Chr2g0312791 42.466 219 119 5 227 442 4 218 5.09e-48 164
Msa0083240 MtrunA17_Chr2g0312791 42.289 201 109 6 9 207 4 199 3.30e-44 154
Msa0083240 MtrunA17_Chr2g0312781 42.233 206 114 3 227 431 21 222 9.89e-48 164
Msa0083240 MtrunA17_Chr2g0312781 40.299 201 110 6 16 213 28 221 1.56e-40 144
Msa0083240 MtrunA17_Chr7g0240581 40.724 221 125 4 228 446 8 224 1.01e-47 163
Msa0083240 MtrunA17_Chr7g0240581 39.904 208 122 1 10 217 8 212 6.11e-46 159
Msa0083240 MtrunA17_Chr5g0415411 41.121 214 120 3 227 434 5 218 6.03e-47 161
Msa0083240 MtrunA17_Chr5g0415411 39.819 221 114 5 9 217 5 218 1.08e-44 155
Msa0083240 MtrunA17_Chr8g0363751 42.731 227 122 5 226 445 4 229 1.42e-46 160
Msa0083240 MtrunA17_Chr8g0363751 39.111 225 126 7 8 224 4 225 6.80e-43 151
Msa0083240 MtrunA17_Chr7g0240551 40.000 215 125 2 227 440 7 218 4.79e-46 159
Msa0083240 MtrunA17_Chr7g0240551 39.713 209 123 1 9 217 7 212 1.48e-44 155
Msa0083240 MtrunA17_Chr7g0240541 40.278 216 125 2 227 441 7 219 1.71e-45 157
Msa0083240 MtrunA17_Chr7g0240541 40.191 209 122 1 9 217 7 212 1.11e-43 152
Msa0083240 MtrunA17_Chr7g0240531 39.815 216 126 2 227 441 7 219 1.18e-43 152
Msa0083240 MtrunA17_Chr7g0240531 38.278 209 126 1 9 217 7 212 6.01e-41 145
Msa0083240 MtrunA17_Chr2g0312681 41.315 213 120 3 227 438 4 212 7.25e-43 150
Msa0083240 MtrunA17_Chr2g0312681 39.048 210 114 6 9 213 4 204 3.54e-37 135
Msa0083240 MtrunA17_Chr7g0240521 40.343 233 132 5 217 446 4 232 4.44e-42 149
Msa0083240 MtrunA17_Chr7g0240521 38.565 223 131 4 9 229 14 232 9.03e-42 148
Msa0083240 MtrunA17_Chr7g0240661 43.333 210 111 3 227 435 7 209 7.48e-42 148
Msa0083240 MtrunA17_Chr7g0240661 42.927 205 110 2 9 213 7 204 8.30e-42 148
Msa0083240 MtrunA17_Chr3g0107731 39.048 210 123 3 226 434 8 213 1.08e-41 147
Msa0083240 MtrunA17_Chr3g0107731 41.111 180 100 5 16 194 16 190 4.16e-34 127
Msa0083240 MtrunA17_Chr7g0240651 39.545 220 122 4 9 226 7 217 2.45e-41 146
Msa0083240 MtrunA17_Chr7g0240651 40.639 219 122 3 227 444 7 218 4.98e-41 145
Msa0083240 MtrunA17_Chr3g0107741 39.423 208 121 3 228 434 10 213 1.52e-40 144
Msa0083240 MtrunA17_Chr3g0107741 41.209 182 97 6 16 194 16 190 4.41e-35 130
Msa0083240 MtrunA17_Chr8g0357241 40.394 203 116 4 234 435 11 209 5.19e-40 143
Msa0083240 MtrunA17_Chr8g0357241 39.367 221 118 7 9 224 4 213 5.70e-37 135
Msa0083240 MtrunA17_Chr8g0357211 39.409 203 118 3 234 435 11 209 2.14e-39 141
Msa0083240 MtrunA17_Chr8g0357211 37.838 222 122 7 9 225 4 214 3.71e-35 130
Msa0083240 MtrunA17_Chr4g0069471 45.143 175 92 3 227 399 25 197 4.71e-39 140
Msa0083240 MtrunA17_Chr4g0069471 41.573 178 95 6 9 182 25 197 5.18e-33 124
Msa0083240 MtrunA17_Chr2g0312691 40.376 213 122 3 227 438 4 212 6.86e-39 140
Msa0083240 MtrunA17_Chr2g0312691 36.893 206 124 4 9 213 4 204 8.19e-35 129
Msa0083240 MtrunA17_Chr2g0312711 39.631 217 117 5 227 438 4 211 8.31e-37 134
Msa0083240 MtrunA17_Chr2g0312711 36.986 219 129 5 9 226 4 214 8.25e-36 131
Msa0083240 MtrunA17_Chr5g0433801 37.745 204 122 3 233 435 12 211 9.39e-37 134
Msa0083240 MtrunA17_Chr5g0433801 36.816 201 117 6 16 213 13 206 3.51e-30 116
Msa0083240 MtrunA17_Chr8g0391631 47.468 158 75 5 225 375 19 175 5.65e-35 128
Msa0083240 MtrunA17_Chr8g0391631 42.593 162 82 7 5 158 17 175 1.20e-32 122
Msa0083240 MtrunA17_Chr2g0313561 64.286 56 19 1 53 107 2 57 4.47e-19 81.3
Msa0083240 MtrunA17_Chr2g0313561 59.322 59 23 1 271 328 2 60 2.66e-18 79.3
Msa0083240 MtrunA17_Chr5g0415421 47.297 74 36 1 251 321 11 84 8.28e-14 68.2
Msa0083240 MtrunA17_Chr5g0415421 41.892 74 40 1 33 103 11 84 4.79e-12 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0083240 AT3G09270.1 45.205 219 116 3 228 444 7 223 1.45e-54 181
Msa0083240 AT3G09270.1 46.190 210 106 6 10 216 7 212 6.26e-50 169
Msa0083240 AT2G29460.1 40.639 219 127 2 227 444 7 223 3.83e-54 181
Msa0083240 AT2G29460.1 36.652 221 136 4 6 225 4 221 3.07e-44 154
Msa0083240 AT2G29420.1 42.130 216 123 1 227 442 9 222 1.08e-52 177
Msa0083240 AT2G29420.1 37.387 222 133 3 9 230 9 224 2.09e-45 157
Msa0083240 AT2G29470.1 40.455 220 127 3 228 445 8 225 1.64e-52 176
Msa0083240 AT2G29470.1 39.189 222 128 5 10 228 8 225 2.98e-50 170
Msa0083240 AT2G29450.1 42.291 227 121 4 223 444 2 223 6.45e-52 174
Msa0083240 AT2G29450.1 39.545 220 126 4 9 225 6 221 4.66e-47 162
Msa0083240 AT2G29440.1 41.256 223 122 4 227 445 6 223 7.92e-50 169
Msa0083240 AT2G29440.1 37.500 224 130 6 6 225 3 220 2.17e-41 147
Msa0083240 AT2G29490.1 40.183 219 128 2 228 445 8 224 1.33e-49 169
Msa0083240 AT2G29490.1 40.291 206 117 4 10 213 8 209 1.41e-46 160
Msa0083240 AT1G10370.1 42.411 224 124 3 226 444 4 227 1.76e-49 168
Msa0083240 AT1G10370.1 40.741 216 120 4 8 217 4 217 6.75e-47 162
Msa0083240 AT2G29480.1 40.183 219 128 2 228 445 8 224 1.80e-49 168
Msa0083240 AT2G29480.1 36.321 212 129 4 6 215 4 211 2.30e-40 144
Msa0083240 AT1G59670.1 40.529 227 129 4 227 447 6 232 1.79e-48 166
Msa0083240 AT1G59670.1 44.670 197 100 6 9 198 6 200 1.87e-45 158
Msa0083240 AT1G78340.1 42.105 209 116 3 227 434 4 208 1.88e-46 160
Msa0083240 AT1G78340.1 43.503 177 92 5 9 182 4 175 5.35e-41 145
Msa0083240 AT1G17180.1 39.631 217 126 3 227 442 4 216 2.53e-46 160
Msa0083240 AT1G17180.1 38.208 212 121 6 9 217 4 208 1.00e-39 142
Msa0083240 AT1G59700.1 41.048 229 127 5 227 449 6 232 8.12e-46 159
Msa0083240 AT1G59700.1 39.910 223 125 6 9 224 6 226 8.25e-43 151
Msa0083240 AT1G78370.1 41.262 206 116 4 230 434 7 208 1.41e-45 158
Msa0083240 AT1G78370.1 40.887 203 114 6 16 217 11 208 1.12e-42 150
Msa0083240 AT1G10360.1 41.518 224 124 4 227 444 5 227 2.20e-44 155
Msa0083240 AT1G10360.1 40.278 216 119 4 9 217 5 217 8.09e-42 148
Msa0083240 AT1G78380.1 41.667 216 121 4 227 441 4 215 2.86e-44 154
Msa0083240 AT1G78380.1 37.736 212 122 6 9 217 4 208 2.17e-36 134
Msa0083240 AT5G62480.1 37.156 218 130 2 227 437 8 225 3.64e-44 155
Msa0083240 AT5G62480.1 37.383 214 120 5 12 215 11 220 2.90e-43 152
Msa0083240 AT1G17170.1 41.014 217 122 5 227 442 4 215 5.55e-44 154
Msa0083240 AT1G17170.1 38.356 219 128 6 9 226 4 216 2.72e-40 144
Msa0083240 AT1G78320.1 40.097 207 119 3 227 432 4 206 1.36e-43 152
Msa0083240 AT1G78320.1 42.328 189 99 6 9 194 4 185 1.94e-39 142
Msa0083240 AT1G74590.1 35.065 231 147 2 222 449 2 232 6.07e-43 151
Msa0083240 AT1G74590.1 35.185 216 134 5 6 217 4 217 3.50e-37 136
Msa0083240 AT1G78360.1 39.535 215 124 4 226 438 3 213 3.81e-42 149
Msa0083240 AT1G78360.1 36.321 212 128 5 8 217 3 209 1.48e-35 131
Msa0083240 AT1G27130.1 40.376 213 121 4 228 434 7 219 4.40e-40 144
Msa0083240 AT1G27130.1 38.967 213 125 3 10 217 7 219 1.52e-39 142
Msa0083240 AT1G69930.1 39.810 211 123 3 228 434 13 223 4.62e-40 144
Msa0083240 AT1G69930.1 38.028 213 125 4 10 217 13 223 2.36e-39 142
Msa0083240 AT1G17190.1 35.000 220 138 3 227 445 5 220 6.30e-40 143
Msa0083240 AT1G17190.1 36.098 205 121 6 16 217 12 209 2.19e-35 131
Msa0083240 AT3G43800.1 37.156 218 130 4 227 440 5 219 4.64e-38 138
Msa0083240 AT3G43800.1 36.481 233 132 8 9 236 5 226 5.36e-35 130
Msa0083240 AT1G53680.1 38.119 202 118 4 233 431 13 210 1.58e-37 137
Msa0083240 AT1G53680.1 37.745 204 113 7 16 213 14 209 9.79e-34 126
Msa0083240 AT1G27140.1 39.367 221 127 4 228 441 7 227 3.17e-37 136
Msa0083240 AT1G27140.1 40.394 203 113 5 10 205 7 208 6.59e-36 133
Msa0083240 AT1G69920.1 36.697 218 123 6 10 217 35 247 2.11e-36 134
Msa0083240 AT1G69920.1 38.498 213 125 4 228 434 35 247 8.21e-36 133
Msa0083240 AT5G62480.2 30.415 217 120 2 227 437 8 199 2.25e-28 112
Msa0083240 AT5G62480.2 30.693 202 106 4 12 206 11 185 1.23e-27 110
Msa0083240 AT5G62480.3 30.415 217 119 2 227 437 8 198 2.43e-28 111
Msa0083240 AT5G62480.3 30.693 202 105 4 12 206 11 184 1.31e-27 109
Msa0083240 AT1G78320.2 32.524 206 109 3 227 432 4 179 1.32e-26 106
Msa0083240 AT1G78320.2 33.511 188 90 6 9 194 4 158 4.49e-21 91.3

Find 106 sgRNAs with CRISPR-Local

Find 474 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATTCCCTCGATTGCATTTA+TGG 0.096900 1_2:-62297321 Msa0083240:CDS
TCAACATATTTAACCCAAAA+TGG 0.128778 1_2:+62298439 None:intergenic
TGGTATACCTTTCAAATTTA+AGG 0.140225 1_2:+62298657 None:intergenic
GGTATAGCCCTTTCACTTTA+AGG 0.144203 1_2:-62305396 Msa0083240:CDS
ACAGAGCTCAAGCAAGATTT+TGG 0.157759 1_2:-62305159 Msa0083240:CDS
AGAAGGCCAGAGAGAATTTA+TGG 0.204560 1_2:-62297501 Msa0083240:CDS
ACAGAGCTCAAGCCCCATTT+TGG 0.212395 1_2:-62298453 Msa0083240:CDS
GCATCTTCTTGAGAAAATTA+TGG 0.268793 1_2:-62297193 Msa0083240:exon
GCACTCCTCTATAGCAAAAT+TGG 0.275055 1_2:-62297535 Msa0083240:CDS
AATGATCAGAATAAGTTCTA+TGG 0.275936 1_2:-62304153 Msa0083240:CDS
CATACTACCCTTAAAGTAAA+AGG 0.285985 1_2:+62298682 None:intergenic
AAAGTCCAGGGATAATTTAT+TGG 0.296970 1_2:-62304208 Msa0083240:CDS
AGCTATGTCTACAATGTTAA+TGG 0.297246 1_2:+62297414 None:intergenic
AGGTGAAACTACATGGATTT+TGG 0.302285 1_2:-62298711 Msa0083240:CDS
TATCAAATTTATTGAGGTTC+AGG 0.304577 1_2:-62297380 Msa0083240:CDS
GTATAGCCCTTTCACTTTAA+GGG 0.310873 1_2:-62305395 Msa0083240:CDS
TCCACCTAAACAGAGGTATT+TGG 0.321002 1_2:-62296937 Msa0083240:three_prime_UTR
TGTACCAAATACCTCTGTTT+AGG 0.340791 1_2:+62296933 None:intergenic
ACAAAGCATTTGTATCTTCA+TGG 0.352326 1_2:-62297153 Msa0083240:three_prime_UTR
CGATGGAACGCCACAATTGC+CGG 0.355415 1_2:+62304258 None:intergenic
TTCCATCGAAGCATAATTAA+AGG 0.356302 1_2:-62304243 Msa0083240:CDS
GCCACCAACTTCTCTTGGTC+AGG 0.366758 1_2:+62297256 None:intergenic
AGGTGGAGAACAAAATTATA+AGG 0.378381 1_2:+62296953 None:intergenic
TTGAATACATTGATGAGATA+TGG 0.380718 1_2:-62305216 Msa0083240:CDS
ACTGGAGTCTTCTTGTGTAT+TGG 0.392101 1_2:+62305283 None:intergenic
CAACATATTTAACCCAAAAT+GGG 0.393217 1_2:+62298440 None:intergenic
TGGGGCTTGAGCTCTGTCAT+AGG 0.393564 1_2:+62298459 None:intergenic
AATGATCATGGACTCACATA+TGG 0.394155 1_2:+62298534 None:intergenic
GGTTAAATATGTTGATGAAT+TGG 0.403400 1_2:-62298431 Msa0083240:intron
AGTTATTGAAGATAAGTGTT+TGG 0.410970 1_2:-62297467 Msa0083240:CDS
CTTGCTTGAGCTCTGTCATA+TGG 0.416587 1_2:+62305166 None:intergenic
TAGAGGAAGATCACTTCAAT+AGG 0.428981 1_2:-62305330 Msa0083240:CDS
CTTTCACTTTAAGGGTGGTA+TGG 0.431843 1_2:-62305387 Msa0083240:CDS
TTGAATACATTGATGAGATA+TGG 0.441703 1_2:-62298510 Msa0083240:CDS
AACATTGTAGACATAGCTCT+TGG 0.450264 1_2:-62297409 Msa0083240:CDS
CTTGAAGTTTCCGGCAATTG+TGG 0.451600 1_2:-62304268 Msa0083240:intron
AGCTATGTCTACAATGCTAA+TGG 0.458716 1_2:+62304122 None:intergenic
CACCTTTAATTATGCTTCGA+TGG 0.459821 1_2:+62304241 None:intergenic
AGCATTGTAGACATAGCTCT+TGG 0.461735 1_2:-62304117 Msa0083240:CDS
TTCAATTAGAGAATTAAGAA+AGG 0.461738 1_2:+62297234 None:intergenic
GAAAGGCCACCAACTTCTCT+TGG 0.471563 1_2:+62297251 None:intergenic
AGATAAAACTACATGGATCT+TGG 0.472943 1_2:-62305417 Msa0083240:CDS
ATAATCATGGACTCACATAT+AGG 0.473284 1_2:+62305241 None:intergenic
TTTATGGTTTAATAATTTCA+AGG 0.475281 1_2:-62304013 Msa0083240:CDS
GTGAAGAGCGGGAAAAGTCC+AGG 0.476986 1_2:-62304221 Msa0083240:CDS
AATGTATTCAACAATAATCA+TGG 0.478690 1_2:+62305228 None:intergenic
AATGTATTCAACAATGATCA+TGG 0.484642 1_2:+62298522 None:intergenic
ATGATCAGAATAAGTTCTAT+GGG 0.489286 1_2:-62304152 Msa0083240:CDS
GAAGGCCAGAGAGAATTTAT+GGG 0.489428 1_2:-62297500 Msa0083240:CDS
TCTTCCTCTATACTATCATA+TGG 0.496062 1_2:+62305343 None:intergenic
TCTTCCTCTATGTTCTCATA+TGG 0.502605 1_2:+62298637 None:intergenic
CATAATTAAAGGTGAAGAGC+GGG 0.504869 1_2:-62304232 Msa0083240:CDS
CACCCCTGACCAAGAGAAGT+TGG 0.508213 1_2:-62297260 Msa0083240:CDS
CAAAGCATTTGTATCTTCAT+GGG 0.509542 1_2:-62297152 Msa0083240:three_prime_UTR
ATTAAACCATAAATGCAAGC+GGG 0.510641 1_2:+62304023 None:intergenic
TCGCTCCCATAAATTCTCTC+TGG 0.520342 1_2:+62297495 None:intergenic
CATGCACAAGCTAATTAAGA+TGG 0.520586 1_2:-62305443 Msa0083240:CDS
TTTCCATCATGAACTAGCAC+TGG 0.520703 1_2:+62298559 None:intergenic
TTTCCATCATGAACCAGCAC+TGG 0.520744 1_2:+62305265 None:intergenic
GGATTATATTGAAGAAGTTG+AGG 0.529265 1_2:+62305304 None:intergenic
GATATGGTCACACAACTCAT+TGG 0.531719 1_2:-62298494 Msa0083240:CDS
ATGATCATGGACTCACATAT+GGG 0.533497 1_2:+62298535 None:intergenic
CTCTGAGCAAGAGAAGTTTG+TGG 0.536542 1_2:-62303965 Msa0083240:CDS
GCTCTGTCATATGGATCAGC+AGG 0.539671 1_2:+62305175 None:intergenic
GCTCTGTCATAGGGATCAGC+AGG 0.544103 1_2:+62298469 None:intergenic
CATACCACCCTTAAAGTGAA+AGG 0.544844 1_2:+62305388 None:intergenic
CCACCAACTTCTCTTGGTCA+GGG 0.547093 1_2:+62297257 None:intergenic
TCGCTCCAATAAATTATCCC+TGG 0.548240 1_2:+62304203 None:intergenic
TTTACAGATTTCGGCAATTG+CGG 0.548298 1_2:-62297557 Msa0083240:intron
ATGGCAGAGGTGAAACTACA+TGG 0.553227 1_2:-62298718 Msa0083240:CDS
GGGGCTTGAGCTCTGTCATA+GGG 0.554904 1_2:+62298460 None:intergenic
GGAGCGACTCGGAGTTGTTG+AGG 0.560264 1_2:-62304187 Msa0083240:CDS
GTATGGACCTTAAATTTGAA+AGG 0.561421 1_2:-62298664 Msa0083240:CDS
ACTCCAGTGCTAGTTCATGA+TGG 0.566801 1_2:-62298562 Msa0083240:CDS
CACCAACTTCTCTTGGTCAG+GGG 0.567960 1_2:+62297258 None:intergenic
ACTCCAGTGCTGGTTCATGA+TGG 0.570563 1_2:-62305268 Msa0083240:CDS
TAACACAACACAAGCTAGGA+TGG 0.571188 1_2:-62298737 Msa0083240:CDS
ACCAAATACCTCTGTTTAGG+TGG 0.571738 1_2:+62296936 None:intergenic
ATACCACCCTTAAAGTGAAA+GGG 0.572861 1_2:+62305389 None:intergenic
TATACCATATGATAGTATAG+AGG 0.574275 1_2:-62305347 Msa0083240:CDS
GATAATTTATTGGAGCGACT+CGG 0.578052 1_2:-62304198 Msa0083240:CDS
GGTATGGACTCTAAATCTGA+AGG 0.579905 1_2:-62305371 Msa0083240:CDS
AGGATAACACAACACAAGCT+AGG 0.581614 1_2:-62298741 Msa0083240:CDS
TTAAACCATAAATGCAATCG+AGG 0.585366 1_2:+62297316 None:intergenic
ACACAAGAAGACTCCAGTGC+TGG 0.585534 1_2:-62305278 Msa0083240:CDS
AACATATTTAACCCAAAATG+GGG 0.589051 1_2:+62298441 None:intergenic
TTAAACCATAAATGCAAGCG+GGG 0.603941 1_2:+62304024 None:intergenic
GGGTTATATTGAAGAAGCAG+AGG 0.607257 1_2:+62298598 None:intergenic
TAGCCCTTTCACTTTAAGGG+TGG 0.610464 1_2:-62305392 Msa0083240:CDS
TATTAAACCATAAATGCAAG+CGG 0.610901 1_2:+62304022 None:intergenic
CCCTGACCAAGAGAAGTTGG+TGG 0.614205 1_2:-62297257 Msa0083240:CDS
GGTTAAATATGTTGATGACA+TGG 0.614212 1_2:-62305137 Msa0083240:intron
GTATGGACTCTAAATCTGAA+GGG 0.617910 1_2:-62305370 Msa0083240:CDS
TAAACCATAAATGCAATCGA+GGG 0.618785 1_2:+62297317 None:intergenic
ATGGCAGAGATAAAACTACA+TGG 0.623570 1_2:-62305424 Msa0083240:CDS
AATTGGTGAAGAGCGAGAGA+AGG 0.634346 1_2:-62297518 Msa0083240:CDS
CACAAACTTCTCTTGCTCAG+AGG 0.635555 1_2:+62303966 None:intergenic
TTTGTTCTCCACCTAAACAG+AGG 0.645358 1_2:-62296944 Msa0083240:three_prime_UTR
TGAAGAGCGGGAAAAGTCCA+GGG 0.655285 1_2:-62304220 Msa0083240:CDS
AACACAAGCTAGGATGGCAG+AGG 0.663463 1_2:-62298731 Msa0083240:CDS
GCATAATTAAAGGTGAAGAG+CGG 0.664372 1_2:-62304233 Msa0083240:CDS
TAAACCATAAATGCAAGCGG+GGG 0.664553 1_2:+62304025 None:intergenic
GCAGGAAGCAATGAGTTGTG+TGG 0.667285 1_2:+62305193 None:intergenic
TGATCAGAATAAGTTCTATG+GGG 0.669740 1_2:-62304151 Msa0083240:CDS
GATCAGAATAAGTTCTATGG+GGG 0.670673 1_2:-62304150 Msa0083240:CDS
TATACCATATGAGAACATAG+AGG 0.675165 1_2:-62298641 Msa0083240:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTATTTTTATAATTTTTTTT+GGG + chr1_2:62303404-62303423 None:intergenic 0.0%
!!! TTTATTTTTATAATTTTTTT+TGG + chr1_2:62303405-62303424 None:intergenic 0.0%
!!! TGTGTATTTTTTTTTTTTTT+TGG - chr1_2:62298619-62298638 Msa0083240:CDS 10.0%
!!! AAAATGTTTATAGAAATTTT+GGG + chr1_2:62299760-62299779 None:intergenic 10.0%
!! AGAAAAAAAATTATAATATG+GGG - chr1_2:62301379-62301398 Msa0083240:intron 10.0%
!! TATAAAATCTATTTATTTGT+GGG + chr1_2:62301415-62301434 None:intergenic 10.0%
!!! AAATAAATAGATTTTATAGT+GGG - chr1_2:62301417-62301436 Msa0083240:intron 10.0%
!!! TCATATATTTATTATTTTGA+CGG + chr1_2:62302047-62302066 None:intergenic 10.0%
!!! ATTAAAAAAAATAGCAATTT+TGG + chr1_2:62302982-62303001 None:intergenic 10.0%
!!! AATTGCTATTTTTTTTAATA+AGG - chr1_2:62302983-62303002 Msa0083240:intron 10.0%
!!! ATTGCTATTTTTTTTAATAA+GGG - chr1_2:62302984-62303003 Msa0083240:intron 10.0%
!!! ATCTTTTTTTTTTTTTTAGA+AGG - chr1_2:62303196-62303215 Msa0083240:intron 10.0%
!!! AGGATTTAATTTAATTTTAT+AGG - chr1_2:62304091-62304110 Msa0083240:CDS 10.0%
!!! TTTATGGTTTAATAATTTTA+AGG - chr1_2:62305053-62305072 Msa0083240:intron 10.0%
!! TTTATGTTTAAAAACTTCAT+TGG + chr1_2:62297711-62297730 None:intergenic 15.0%
!!! CTCAATTTAAAGTTTTAAAA+AGG + chr1_2:62297769-62297788 None:intergenic 15.0%
!! TCTTGAATATAGTTATAAAT+AGG + chr1_2:62297849-62297868 None:intergenic 15.0%
!! ATTCAAACTAACAATAATAT+TGG - chr1_2:62298059-62298078 Msa0083240:intron 15.0%
!! TTCAAACTAACAATAATATT+GGG - chr1_2:62298060-62298079 Msa0083240:intron 15.0%
!! TTTATGGTTTAATAATTTCA+AGG - chr1_2:62298345-62298364 Msa0083240:intron 15.0%
!! TATTAAGTATTAATTTATGG+TGG + chr1_2:62298536-62298555 None:intergenic 15.0%
!!! GTATTTTTTTTTTTTTTTGG+TGG - chr1_2:62298622-62298641 Msa0083240:CDS 15.0%
!! ATTCAATAATTAAACGTAAA+AGG + chr1_2:62298757-62298776 None:intergenic 15.0%
!!! CAATTAAATTTGTTATTTGA+CGG + chr1_2:62298889-62298908 None:intergenic 15.0%
!! TAACATTAAAAATGATGTTT+AGG - chr1_2:62299406-62299425 Msa0083240:intron 15.0%
!!! AAATGTTTATAGAAATTTTG+GGG + chr1_2:62299759-62299778 None:intergenic 15.0%
!!! GAAAATGTTTATAGAAATTT+TGG + chr1_2:62299761-62299780 None:intergenic 15.0%
!!! GTTGTTTTTTAAAATGAAAT+CGG + chr1_2:62300987-62301006 None:intergenic 15.0%
!!! GTTGTTTTTTAAAATGAAAT+CGG + chr1_2:62300987-62301006 None:intergenic 15.0%
!!! GTTGTTTTTTAAAATGAAAT+CGG - chr1_2:62300987-62301006 Msa0083240:intron 15.0%
!!! GTTGTTTTTTAAAATGAAAT+CGG - chr1_2:62300987-62301006 Msa0083240:intron 15.0%
!! CTATAAAATCTATTTATTTG+TGG + chr1_2:62301416-62301435 None:intergenic 15.0%
!!! CAAATAAATAGATTTTATAG+TGG - chr1_2:62301416-62301435 Msa0083240:intron 15.0%
!! TAATTGAAAAGAATTATTTG+GGG + chr1_2:62301448-62301467 None:intergenic 15.0%
!! CTAATTGAAAAGAATTATTT+GGG + chr1_2:62301449-62301468 None:intergenic 15.0%
!!! CAAATAATTCTTTTCAATTA+GGG - chr1_2:62301448-62301467 Msa0083240:intron 15.0%
!!! AAATAATTCTTTTCAATTAG+GGG - chr1_2:62301449-62301468 Msa0083240:intron 15.0%
!!! TTGACTTTTTTTTTTTTTTG+TGG + chr1_2:62301863-62301882 None:intergenic 15.0%
!! AATTAACAAAGATCTTTAAA+TGG + chr1_2:62302422-62302441 None:intergenic 15.0%
!!! CTTTTTACTCAATAAATAAT+AGG - chr1_2:62302732-62302751 Msa0083240:intron 15.0%
!!! TTTTGCCATTTTTTTTAATA+GGG + chr1_2:62302808-62302827 None:intergenic 15.0%
!!! TTGCTATTTTTTTTAATAAG+GGG - chr1_2:62302985-62303004 Msa0083240:intron 15.0%
!! AATGAACACTATTATTATTT+AGG + chr1_2:62303059-62303078 None:intergenic 15.0%
!!! GCATTATTAATTTTTCTTTT+TGG + chr1_2:62303104-62303123 None:intergenic 15.0%
!! AAAAGAAAAATTAATAATGC+TGG - chr1_2:62303104-62303123 Msa0083240:intron 15.0%
!! AAAATTAAATTAAATCCTCA+TGG + chr1_2:62304089-62304108 None:intergenic 15.0%
!! ATGTAATTTATCTTTATGAA+TGG - chr1_2:62304499-62304518 Msa0083240:intron 15.0%
!!! ATGATCAAAAGAAATTTTAT+GGG - chr1_2:62304914-62304933 Msa0083240:intron 15.0%
!!! ATCTTTTATCAAATTTATTG+AGG - chr1_2:62304972-62304991 Msa0083240:intron 15.0%
!! AATGTATTCAACAATAATCA+TGG + chr1_2:62297133-62297152 None:intergenic 20.0%
!! ATGTAATTTATCTCTTTGAA+TGG - chr1_2:62297631-62297650 Msa0083240:intron 20.0%
!!! CCAATAATTTTCAATAGTAA+GGG + chr1_2:62297974-62297993 None:intergenic 20.0%
!!! TCCAATAATTTTCAATAGTA+AGG + chr1_2:62297975-62297994 None:intergenic 20.0%
!! AGTAATGTTTATAAGATAGA+AGG + chr1_2:62298017-62298036 None:intergenic 20.0%
!!! ATCTTTTGTGAAATTTATTG+AGG - chr1_2:62298264-62298283 Msa0083240:intron 20.0%
!!! TTTTTTTTTTTTTTTGGTGG+TGG - chr1_2:62298625-62298644 Msa0083240:CDS 20.0%
!! CGTCAAATAACAAATTTAAT+TGG - chr1_2:62298887-62298906 Msa0083240:intron 20.0%
!! ACATAATTCCTTAATATAAG+TGG + chr1_2:62299107-62299126 None:intergenic 20.0%
!!! TGTTATCTTTGAGTTATTAA+AGG + chr1_2:62299391-62299410 None:intergenic 20.0%
!! TAAAAATCCACAAGATTAAA+AGG - chr1_2:62299694-62299713 Msa0083240:intron 20.0%
!!! TAAATAAGCTGTTTTGAATA+AGG + chr1_2:62300934-62300953 None:intergenic 20.0%
!!! GTTGTTTTTTAAGATGAAAT+CGG + chr1_2:62300676-62300695 None:intergenic 20.0%
!!! AATAAGTTGTTTTGAATAAG+CGG - chr1_2:62300904-62300923 Msa0083240:intron 20.0%
!! CCTAATTGAAAAGAATTATT+TGG + chr1_2:62301450-62301469 None:intergenic 20.0%
!!! CCAAATAATTCTTTTCAATT+AGG - chr1_2:62301447-62301466 Msa0083240:intron 20.0%
!!! AATAATTCTTTTCAATTAGG+GGG - chr1_2:62301450-62301469 Msa0083240:intron 20.0%
!! AAAAATAACTTTGTTACTCT+AGG + chr1_2:62301606-62301625 None:intergenic 20.0%
!!! AAAATTAATGTTGACTTGTT+AGG + chr1_2:62301730-62301749 None:intergenic 20.0%
!!! ACTTTTTTTTTTTTTTGTGG+TGG + chr1_2:62301860-62301879 None:intergenic 20.0%
!!! TACTGTTTTATTTATCGTTT+TGG + chr1_2:62301944-62301963 None:intergenic 20.0%
!!! TATTTTTAGTTTAGTACCAT+TGG - chr1_2:62302329-62302348 Msa0083240:intron 20.0%
!!! TTTAGACTTTTTAACAAGTA+TGG + chr1_2:62302468-62302487 None:intergenic 20.0%
!! TCATATTACTACTATCATAA+AGG - chr1_2:62302619-62302638 Msa0083240:intron 20.0%
!!! ATTTTTTGCATATTCAGAAT+CGG + chr1_2:62302700-62302719 None:intergenic 20.0%
!!! TTTGCCATTTTTTTTAATAG+GGG + chr1_2:62302807-62302826 None:intergenic 20.0%
!!! CTTTTGCCATTTTTTTTAAT+AGG + chr1_2:62302809-62302828 None:intergenic 20.0%
!! TTCAGAAAAAATTGCAATTA+TGG - chr1_2:62302904-62302923 Msa0083240:intron 20.0%
!!! TTTTTTTTTTAGAAGGATGA+AGG - chr1_2:62303203-62303222 Msa0083240:intron 20.0%
!! AAGAATGAAAGTTGAATTAA+CGG + chr1_2:62304319-62304338 None:intergenic 20.0%
!! TGAAACATTCTTAATAGTAT+AGG + chr1_2:62297474-62297493 None:intergenic 20.0%
!! CTTAATCTTAAGTTTCAAAA+AGG + chr1_2:62304622-62304641 None:intergenic 20.0%
!! GAAACTTAAGATTAAGTTAA+AGG - chr1_2:62304626-62304645 Msa0083240:intron 20.0%
!! AAATTAAGTTAAAGGATTCA+TGG - chr1_2:62304665-62304684 Msa0083240:intron 20.0%
!!! GATGATCAAAAGAAATTTTA+TGG - chr1_2:62304913-62304932 Msa0083240:intron 20.0%
!!! TGATCAAAAGAAATTTTATG+GGG - chr1_2:62304915-62304934 Msa0083240:intron 20.0%
!! TTCAATTAGAGAATTAAGAA+AGG + chr1_2:62305127-62305146 None:intergenic 20.0%
!!! AAATTATGGCTTTTATGAAT+TGG - chr1_2:62305179-62305198 Msa0083240:CDS 20.0%
!!! TTCTTTTAATGTTGAAAGTA+AGG - chr1_2:62305318-62305337 Msa0083240:CDS 20.0%
! TATACCATATGATAGTATAG+AGG - chr1_2:62297011-62297030 Msa0083240:three_prime_UTR 25.0%
! TTGAATACATTGATGAGATA+TGG - chr1_2:62297142-62297161 Msa0083240:three_prime_UTR 25.0%
!! ATTTAAGTTAAATGACTTCC+GGG + chr1_2:62297351-62297370 None:intergenic 25.0%
!! GATTTAAGTTAAATGACTTC+CGG + chr1_2:62297352-62297371 None:intergenic 25.0%
! GATAGATGACTAATTTGATT+TGG + chr1_2:62297387-62297406 None:intergenic 25.0%
! ATATATCATCATGTAGACAA+TGG + chr1_2:62297456-62297475 None:intergenic 25.0%
! CATAGATCAAAAATGAAGTT+TGG - chr1_2:62297678-62297697 Msa0083240:intron 25.0%
!! ATAATTTTCAATAGTAAGGG+AGG + chr1_2:62297971-62297990 None:intergenic 25.0%
! CCCTTACTATTGAAAATTAT+TGG - chr1_2:62297971-62297990 Msa0083240:intron 25.0%
!! TTAGTTTGAATCTAGATAGA+AGG + chr1_2:62298050-62298069 None:intergenic 25.0%
! AATGATCAGAATAAGTTCTA+TGG - chr1_2:62298205-62298224 Msa0083240:intron 25.0%
! ATGATCAGAATAAGTTCTAT+GGG - chr1_2:62298206-62298225 Msa0083240:intron 25.0%
! TATTAAACCATAAATGCAAG+CGG + chr1_2:62298339-62298358 None:intergenic 25.0%
! GCCTCTAATTGAAAAAATAA+TGG - chr1_2:62298426-62298445 Msa0083240:intron 25.0%
!!! GCCATTATTTTTTCAATTAG+AGG + chr1_2:62298430-62298449 None:intergenic 25.0%
! ATGAAAAATTCTAATACGAC+TGG - chr1_2:62298497-62298516 Msa0083240:CDS 25.0%
! GACAATGCATAAAATATACA+AGG + chr1_2:62298669-62298688 None:intergenic 25.0%
!! TATTATTAGCTTAGTTGGTA+TGG + chr1_2:62298691-62298710 None:intergenic 25.0%
! AAATGCATCCACTTATATTA+AGG - chr1_2:62299096-62299115 Msa0083240:intron 25.0%
! TATGAGATCATCTATATATC+TGG - chr1_2:62299280-62299299 Msa0083240:intron 25.0%
! ATGAGATCATCTATATATCT+GGG - chr1_2:62299281-62299300 Msa0083240:intron 25.0%
!!! ATGGTTTTAGATTAATTCCA+TGG + chr1_2:62299539-62299558 None:intergenic 25.0%
! ACAACTGTAAGTAAATTCTA+CGG + chr1_2:62299589-62299608 None:intergenic 25.0%
!!! GCTGTTTTTTAAAATGAGAT+CGG - chr1_2:62301235-62301254 Msa0083240:intron 25.0%
!!! TTATAATATGGGGCTTTATT+AGG - chr1_2:62301389-62301408 Msa0083240:intron 25.0%
! TGAACAAAAGACATGAATAA+AGG - chr1_2:62301560-62301579 Msa0083240:intron 25.0%
! TTAGATGAGTCAATATTGAT+TGG + chr1_2:62301759-62301778 None:intergenic 25.0%
! GACAATGCATAATATATACA+AGG - chr1_2:62301815-62301834 Msa0083240:intron 25.0%
! TGCATAATATATACAAGGTA+CGG - chr1_2:62301820-62301839 Msa0083240:intron 25.0%
!!! TTGACAAGACATTTTTTGTT+TGG - chr1_2:62302113-62302132 Msa0083240:intron 25.0%
!! TAATCACATAAACTTTGAGA+CGG + chr1_2:62302232-62302251 None:intergenic 25.0%
!!! CAATTTTTTCTGAAGATAAG+GGG + chr1_2:62302898-62302917 None:intergenic 25.0%
!!! GCAATTTTTTCTGAAGATAA+GGG + chr1_2:62302899-62302918 None:intergenic 25.0%
!!! TGCAATTTTTTCTGAAGATA+AGG + chr1_2:62302900-62302919 None:intergenic 25.0%
! AGAAAAATTAATAATGCTGG+TGG - chr1_2:62303107-62303126 Msa0083240:intron 25.0%
! GAAAAATTAATAATGCTGGT+GGG - chr1_2:62303108-62303127 Msa0083240:intron 25.0%
! AAAAATTAATAATGCTGGTG+GGG - chr1_2:62303109-62303128 Msa0083240:intron 25.0%
! AACAAAATGAAACATTTGTG+TGG - chr1_2:62303132-62303151 Msa0083240:intron 25.0%
! ATGAAGGAAATCTTCTTATA+TGG - chr1_2:62303219-62303238 Msa0083240:intron 25.0%
! AAAAAAAATGCAACGTCATA+TGG - chr1_2:62303426-62303445 Msa0083240:intron 25.0%
!! GTATAGTCCTTTTACTTTAA+GGG - chr1_2:62303669-62303688 Msa0083240:intron 25.0%
! TGGTATACCTTTCAAATTTA+AGG + chr1_2:62303704-62303723 None:intergenic 25.0%
! AATGTATTCAACAATGATCA+TGG + chr1_2:62303839-62303858 None:intergenic 25.0%
! TTGAATACATTGATGAGATA+TGG - chr1_2:62297142-62297161 Msa0083240:three_prime_UTR 25.0%
! AACATATTTAACCCAAAATG+GGG + chr1_2:62303920-62303939 None:intergenic 25.0%
! CAACATATTTAACCCAAAAT+GGG + chr1_2:62297215-62297234 None:intergenic 25.0%
! TCAACATATTTAACCCAAAA+TGG + chr1_2:62297216-62297235 None:intergenic 25.0%
!! GGTTAAATATGTTGATGAAT+TGG - chr1_2:62303927-62303946 Msa0083240:intron 25.0%
! TTTATAGGCAAAACTACAAA+AGG - chr1_2:62304106-62304125 Msa0083240:CDS 25.0%
! TTATAGGCAAAACTACAAAA+GGG - chr1_2:62304107-62304126 Msa0083240:CDS 25.0%
! GAATGGTTAAGTATAACTTA+TGG - chr1_2:62304516-62304535 Msa0083240:intron 25.0%
! TTTATGTTCAAAAACGTCAA+CGG + chr1_2:62304568-62304587 None:intergenic 25.0%
! AATCTATAATTTACTTTCCC+TGG - chr1_2:62304706-62304725 Msa0083240:intron 25.0%
! GTAATAATTATAAGACACCA+GGG + chr1_2:62304726-62304745 None:intergenic 25.0%
! TGATTCAGACTAACAATATT+TGG - chr1_2:62304771-62304790 Msa0083240:intron 25.0%
! GGATCAATATTTACAGATTT+CGG - chr1_2:62304792-62304811 Msa0083240:intron 25.0%
! AGTTATTGAAGATAAGTGTT+TGG - chr1_2:62304891-62304910 Msa0083240:intron 25.0%
!! GATCAAAAGAAATTTTATGG+GGG - chr1_2:62304916-62304935 Msa0083240:intron 25.0%
! TATCAAATTTATTGAGGTTC+AGG - chr1_2:62304978-62304997 Msa0083240:intron 25.0%
! TTCTCTAATTGAAAAAGTCA+AGG - chr1_2:62305134-62305153 Msa0083240:intron 25.0%
AGATAAAACTACATGGATCT+TGG - chr1_2:62296941-62296960 Msa0083240:three_prime_UTR 30.0%
TCTTCCTCTATACTATCATA+TGG + chr1_2:62297018-62297037 None:intergenic 30.0%
GGATTATATTGAAGAAGTTG+AGG + chr1_2:62297057-62297076 None:intergenic 30.0%
ATAATCATGGACTCACATAT+AGG + chr1_2:62297120-62297139 None:intergenic 30.0%
!! GGTTAAATATGTTGATGACA+TGG - chr1_2:62297221-62297240 Msa0083240:CDS 30.0%
GAACATGTATCATGATAGAA+AGG + chr1_2:62297305-62297324 None:intergenic 30.0%
!!! ACATGTTCCACTCATTTTTT+AGG - chr1_2:62297317-62297336 Msa0083240:CDS 30.0%
! AGTTTTGCCTAAAAAATGAG+TGG + chr1_2:62297327-62297346 None:intergenic 30.0%
!!! ATTTTTTAGGCAAAACTACC+CGG - chr1_2:62297330-62297349 Msa0083240:CDS 30.0%
AAAGTTAAGTCACTAGTGTA+AGG + chr1_2:62297418-62297437 None:intergenic 30.0%
! TCAACTAGAGTCCAATTTTA+GGG + chr1_2:62297504-62297523 None:intergenic 30.0%
! ATCAACTAGAGTCCAATTTT+AGG + chr1_2:62297505-62297524 None:intergenic 30.0%
TGATAACAAGATCACAATCT+TGG - chr1_2:62297521-62297540 Msa0083240:CDS 30.0%
TTAGAAGTCTTACTCTTGAT+TGG + chr1_2:62297872-62297891 None:intergenic 30.0%
TTCCATCGAAGCATAATTAA+AGG - chr1_2:62298115-62298134 Msa0083240:intron 30.0%
AAAGTCCAGGGATAATTTAT+TGG - chr1_2:62298150-62298169 Msa0083240:intron 30.0%
TGATCAGAATAAGTTCTATG+GGG - chr1_2:62298207-62298226 Msa0083240:intron 30.0%
ATTAAACCATAAATGCAAGC+GGG + chr1_2:62298338-62298357 None:intergenic 30.0%
TGCATAAAATATACAAGGTC+CGG + chr1_2:62298664-62298683 None:intergenic 30.0%
! GCAACTATTATTAGCTTAGT+TGG + chr1_2:62298696-62298715 None:intergenic 30.0%
GAGGTAATAGTGTGTAATTA+AGG + chr1_2:62298857-62298876 None:intergenic 30.0%
! TGTTATTTGACGGAAATCAA+GGG + chr1_2:62298879-62298898 None:intergenic 30.0%
!! TTGTTATTTGACGGAAATCA+AGG + chr1_2:62298880-62298899 None:intergenic 30.0%
! TCACATTGGTAGTTAAGAAA+TGG - chr1_2:62299131-62299150 Msa0083240:intron 30.0%
AATCTACTTGACCAAGTTAT+TGG - chr1_2:62299249-62299268 Msa0083240:intron 30.0%
ATCTACTTGACCAAGTTATT+GGG - chr1_2:62299250-62299269 Msa0083240:intron 30.0%
TGAGATCATCTATATATCTG+GGG - chr1_2:62299282-62299301 Msa0083240:intron 30.0%
!! CATATTAATGCAAGGTATTG+TGG + chr1_2:62299354-62299373 None:intergenic 30.0%
TTATTAAAGGAAGTCCCAAT+GGG + chr1_2:62299378-62299397 None:intergenic 30.0%
ATTGTTCATCCTTTATAGTC+AGG - chr1_2:62299488-62299507 Msa0083240:intron 30.0%
GTAAGTAAATTCTACGGATA+AGG + chr1_2:62299583-62299602 None:intergenic 30.0%
AGCATTATTCTCACTATATG+CGG - chr1_2:62299609-62299628 Msa0083240:intron 30.0%
!!! TATAGAAATTTTGGGGCTTA+GGG + chr1_2:62299752-62299771 None:intergenic 30.0%
!!! TTATAGAAATTTTGGGGCTT+AGG + chr1_2:62299753-62299772 None:intergenic 30.0%
!!! AATAGATTTTATAGTGGGCT+TGG - chr1_2:62301422-62301441 Msa0083240:intron 30.0%
!! TTTAAGTGGGCTTTGAAATT+TGG - chr1_2:62301503-62301522 Msa0083240:intron 30.0%
!! TTAAGTGGGCTTTGAAATTT+GGG - chr1_2:62301504-62301523 Msa0083240:intron 30.0%
GAATTAAATTACTCCCTAAG+TGG + chr1_2:62301663-62301682 None:intergenic 30.0%
GCATAATATATACAAGGTAC+GGG - chr1_2:62301821-62301840 Msa0083240:intron 30.0%
CATAATATATACAAGGTACG+GGG - chr1_2:62301822-62301841 Msa0083240:intron 30.0%
!!! TTTTTTTTTTTTGTGGTGGC+CGG + chr1_2:62301856-62301875 None:intergenic 30.0%
GCACACATTAAGTTTCTATA+CGG - chr1_2:62301887-62301906 Msa0083240:intron 30.0%
TAAGAACTCAATTACTCCAA+TGG + chr1_2:62302348-62302367 None:intergenic 30.0%
TGCAACTTATGCAAAGTTAA+GGG + chr1_2:62302776-62302795 None:intergenic 30.0%
TTGCAACTTATGCAAAGTTA+AGG + chr1_2:62303014-62303033 None:intergenic 30.0%
! CTTTGCATAAGTTGCAATTT+TGG - chr1_2:62302780-62302799 Msa0083240:intron 30.0%
TGGTCCCCTATTAAAAAAAA+TGG - chr1_2:62302800-62302819 Msa0083240:intron 30.0%
CATATTTCCCTTATGTTAGA+GGG + chr1_2:62302867-62302886 None:intergenic 30.0%
! CTTTGCATAAGTTGCAATTT+TGG + chr1_2:62302780-62302799 None:intergenic 30.0%
ATTGCAACTTATGCAAAGTT+AGG - chr1_2:62303013-62303032 Msa0083240:intron 30.0%
TTGCAACTTATGCAAAGTTA+GGG - chr1_2:62303014-62303033 Msa0083240:intron 30.0%
AAATGAAACATTTGTGTGGA+AGG - chr1_2:62303136-62303155 Msa0083240:intron 30.0%
! TTGAATTTGACTAGTTGACA+AGG - chr1_2:62303542-62303561 Msa0083240:intron 30.0%
! GGTATAGTCCTTTTACTTTA+AGG - chr1_2:62303668-62303687 Msa0083240:intron 30.0%
CATACTACCCTTAAAGTAAA+AGG + chr1_2:62303679-62303698 None:intergenic 30.0%
!! CTTTTACTTTAAGGGTAGTA+TGG - chr1_2:62303677-62303696 Msa0083240:intron 30.0%
GTATGGACCTTAAATTTGAA+AGG - chr1_2:62303694-62303713 Msa0083240:intron 30.0%
TATACCATATGAGAACATAG+AGG - chr1_2:62303717-62303736 Msa0083240:intron 30.0%
ATGTATTGTGCAAGTACAAT+TGG + chr1_2:62304037-62304056 None:intergenic 30.0%
! ACATGTTCCACTCATTTTAT+AGG - chr1_2:62304053-62304072 Msa0083240:CDS 30.0%
AACTTTGCCTATAAAATGAG+TGG + chr1_2:62304063-62304082 None:intergenic 30.0%
TATAGGCAAAACTACAAAAG+GGG - chr1_2:62304108-62304127 Msa0083240:CDS 30.0%
!! GTACTTTTGGGAAAATACTT+GGG + chr1_2:62304295-62304314 None:intergenic 30.0%
!! TGTACTTTTGGGAAAATACT+TGG + chr1_2:62304296-62304315 None:intergenic 30.0%
! TGAATTAACGGTGTACTTTT+GGG + chr1_2:62304307-62304326 None:intergenic 30.0%
! TTGAATTAACGGTGTACTTT+TGG + chr1_2:62304308-62304327 None:intergenic 30.0%
GGTAATAATTATAAGACACC+AGG + chr1_2:62304727-62304746 None:intergenic 30.0%
TGAGATGGTTAGAACATATT+AGG + chr1_2:62304748-62304767 None:intergenic 30.0%
AGCTATGTCTACAATGTTAA+TGG + chr1_2:62304947-62304966 None:intergenic 30.0%
TAAACCATAAATGCAATCGA+GGG + chr1_2:62305044-62305063 None:intergenic 30.0%
TTAAACCATAAATGCAATCG+AGG + chr1_2:62305045-62305064 None:intergenic 30.0%
GCATCTTCTTGAGAAAATTA+TGG - chr1_2:62305165-62305184 Msa0083240:CDS 30.0%
! ACAAAGCATTTGTATCTTCA+TGG - chr1_2:62305205-62305224 Msa0083240:CDS 30.0%
! CAAAGCATTTGTATCTTCAT+GGG - chr1_2:62305206-62305225 Msa0083240:CDS 30.0%
AGGTGGAGAACAAAATTATA+AGG + chr1_2:62305408-62305427 None:intergenic 30.0%
ATGGCAGAGATAAAACTACA+TGG - chr1_2:62296934-62296953 Msa0083240:three_prime_UTR 35.0%
GTATAGCCCTTTCACTTTAA+GGG - chr1_2:62296963-62296982 Msa0083240:three_prime_UTR 35.0%
ATACCACCCTTAAAGTGAAA+GGG + chr1_2:62296972-62296991 None:intergenic 35.0%
GTATGGACTCTAAATCTGAA+GGG - chr1_2:62296988-62297007 Msa0083240:three_prime_UTR 35.0%
TAGAGGAAGATCACTTCAAT+AGG - chr1_2:62297028-62297047 Msa0083240:three_prime_UTR 35.0%
ATGTATCATGATAGAAAGGC+TGG + chr1_2:62297301-62297320 None:intergenic 35.0%
TTCACACTCAACCCTAAAAT+TGG - chr1_2:62297490-62297509 Msa0083240:CDS 35.0%
!!! TGTTTTTTTCCATGTCAAGC+TGG + chr1_2:62297737-62297756 None:intergenic 35.0%
CACCTTTAATTATGCTTCGA+TGG + chr1_2:62298120-62298139 None:intergenic 35.0%
GCATAATTAAAGGTGAAGAG+CGG - chr1_2:62298125-62298144 Msa0083240:intron 35.0%
CATAATTAAAGGTGAAGAGC+GGG - chr1_2:62298126-62298145 Msa0083240:intron 35.0%
GATAATTTATTGGAGCGACT+CGG - chr1_2:62298160-62298179 Msa0083240:intron 35.0%
GATCAGAATAAGTTCTATGG+GGG - chr1_2:62298208-62298227 Msa0083240:intron 35.0%
AGCTATGTCTACAATGCTAA+TGG + chr1_2:62298239-62298258 None:intergenic 35.0%
TTAAACCATAAATGCAAGCG+GGG + chr1_2:62298337-62298356 None:intergenic 35.0%
!!! CTCAGAGGTATTTTCTTTGA+TGG + chr1_2:62298380-62298399 None:intergenic 35.0%
AGAAGTTTGTGGCTTATGTA+AGG - chr1_2:62298404-62298423 Msa0083240:intron 35.0%
CATAAAATATACAAGGTCCG+GGG + chr1_2:62298662-62298681 None:intergenic 35.0%
GCATAAAATATACAAGGTCC+GGG + chr1_2:62298663-62298682 None:intergenic 35.0%
ATTCCGATTGAACAACAGTT+TGG - chr1_2:62298987-62299006 Msa0083240:intron 35.0%
TTCCGATTGAACAACAGTTT+GGG - chr1_2:62298988-62299007 Msa0083240:intron 35.0%
! TGGATGCATTTAGCATCTTT+TGG + chr1_2:62299087-62299106 None:intergenic 35.0%
GGAATTATGTGTCATCACAT+TGG - chr1_2:62299117-62299136 Msa0083240:intron 35.0%
! CATTGGTAGTTAAGAAATGG+AGG - chr1_2:62299134-62299153 Msa0083240:intron 35.0%
AAATGGAGGACTTACCTATT+AGG - chr1_2:62299148-62299167 Msa0083240:intron 35.0%
GTCAAGTAGATTTATTGCTC+CGG + chr1_2:62299241-62299260 None:intergenic 35.0%
TCTACTTGACCAAGTTATTG+GGG - chr1_2:62299251-62299270 Msa0083240:intron 35.0%
!! ATAAGAGTACCCCAATAACT+TGG + chr1_2:62299263-62299282 None:intergenic 35.0%
TTGCATTAATATGCCCCATT+GGG - chr1_2:62299361-62299380 Msa0083240:intron 35.0%
TATTAAAGGAAGTCCCAATG+GGG + chr1_2:62299377-62299396 None:intergenic 35.0%
GTTATTAAAGGAAGTCCCAA+TGG + chr1_2:62299379-62299398 None:intergenic 35.0%
!! ATCCATTTTTGTGTCACAGT+TGG + chr1_2:62299433-62299452 None:intergenic 35.0%
TGTGACACAAAAATGGATAC+CGG - chr1_2:62299435-62299454 Msa0083240:intron 35.0%
!! GATACCGGTTTAAACATGTT+GGG - chr1_2:62299450-62299469 Msa0083240:intron 35.0%
!! ATACCGGTTTAAACATGTTG+GGG - chr1_2:62299451-62299470 Msa0083240:intron 35.0%
!! GTTAGAGGTGTCAATATCAT+GGG - chr1_2:62299631-62299650 Msa0083240:intron 35.0%
!! TTAGAGGTGTCAATATCATG+GGG - chr1_2:62299632-62299651 Msa0083240:intron 35.0%
TTTAAGCCCCATTACTATGT+GGG + chr1_2:62299678-62299697 None:intergenic 35.0%
! TTTTAAGCCCCATTACTATG+TGG + chr1_2:62299679-62299698 None:intergenic 35.0%
!!! ATAGAAATTTTGGGGCTTAG+GGG + chr1_2:62299751-62299770 None:intergenic 35.0%
! ATTAGGGGGCTTTAATTTAG+TGG - chr1_2:62301464-62301483 Msa0083240:intron 35.0%
! TTAGGGGGCTTTAATTTAGT+GGG - chr1_2:62301465-62301484 Msa0083240:intron 35.0%
!! TTTAATTTAGTGGGCTTGGT+GGG - chr1_2:62301474-62301493 Msa0083240:intron 35.0%
!! TAAGTGGGCTTTGAAATTTG+GGG - chr1_2:62301505-62301524 Msa0083240:intron 35.0%
CACTGCATATAGAGATATAG+AGG + chr1_2:62301542-62301561 None:intergenic 35.0%
! TAACAAAGTTGACTCCACTT+AGG - chr1_2:62301646-62301665 Msa0083240:intron 35.0%
! AACAAAGTTGACTCCACTTA+GGG - chr1_2:62301647-62301666 Msa0083240:intron 35.0%
! GATGAGTCAATATTGATTGG+AGG + chr1_2:62301756-62301775 None:intergenic 35.0%
!!! TTTTTTTTTTTGTGGTGGCC+GGG + chr1_2:62301855-62301874 None:intergenic 35.0%
TTGTTTGGTAAACAATACCG+TGG - chr1_2:62302128-62302147 Msa0083240:intron 35.0%
!! GATTTTAAGGGAAGGACATT+AGG + chr1_2:62302158-62302177 None:intergenic 35.0%
GCAACTTATGCAAAGTTAAG+GGG + chr1_2:62302775-62302794 None:intergenic 35.0%
! TCTTTTGACCCTCTAACATA+AGG - chr1_2:62302856-62302875 Msa0083240:intron 35.0%
! CTTTTGACCCTCTAACATAA+GGG - chr1_2:62302857-62302876 Msa0083240:intron 35.0%
GCATATTTCCCTTATGTTAG+AGG + chr1_2:62302868-62302887 None:intergenic 35.0%
TGCAACTTATGCAAAGTTAG+GGG - chr1_2:62303015-62303034 Msa0083240:intron 35.0%
AATCTTCGACAACGTTTCAT+GGG + chr1_2:62303169-62303188 None:intergenic 35.0%
GTGGATCACCATCTATAAAA+AGG - chr1_2:62303580-62303599 Msa0083240:intron 35.0%
TCACCATCTATAAAAAGGAC+TGG - chr1_2:62303585-62303604 Msa0083240:intron 35.0%
! ACACCAGTCCTTTTTATAGA+TGG + chr1_2:62303591-62303610 None:intergenic 35.0%
! AGGTGAAACTACATGGATTT+TGG - chr1_2:62303647-62303666 Msa0083240:intron 35.0%
TCTTCCTCTATGTTCTCATA+TGG + chr1_2:62303724-62303743 None:intergenic 35.0%
! CTGGAGTTTTCTTGTGTATT+GGG + chr1_2:62303783-62303802 None:intergenic 35.0%
! ACTGGAGTTTTCTTGTGTAT+TGG + chr1_2:62303784-62303803 None:intergenic 35.0%
ATGATCATGGACTCACATAT+GGG + chr1_2:62303826-62303845 None:intergenic 35.0%
AATGATCATGGACTCACATA+TGG + chr1_2:62303827-62303846 None:intergenic 35.0%
CAATTGGATTATGATCACGA+TGG + chr1_2:62304021-62304040 None:intergenic 35.0%
ACAACACATACAACACATCT+GGG - chr1_2:62304211-62304230 Msa0083240:CDS 35.0%
ATTAAATCTGGGTCACACAA+AGG + chr1_2:62304252-62304271 None:intergenic 35.0%
!!! CATCTTTTTTCGTGTGAAGT+TGG + chr1_2:62304594-62304613 None:intergenic 35.0%
TAGTCTGAATCAAGATGAGA+TGG + chr1_2:62304763-62304782 None:intergenic 35.0%
TTTACAGATTTCGGCAATTG+CGG - chr1_2:62304801-62304820 Msa0083240:intron 35.0%
!! CTTCACCAATTTTGCTATAG+AGG + chr1_2:62304831-62304850 None:intergenic 35.0%
AACATTGTAGACATAGCTCT+TGG - chr1_2:62304949-62304968 Msa0083240:intron 35.0%
TGTACCAAATACCTCTGTTT+AGG + chr1_2:62305428-62305447 None:intergenic 35.0%
GGTATAGCCCTTTCACTTTA+AGG - chr1_2:62296962-62296981 Msa0083240:three_prime_UTR 40.0%
CATACCACCCTTAAAGTGAA+AGG + chr1_2:62296973-62296992 None:intergenic 40.0%
! CTTTCACTTTAAGGGTGGTA+TGG - chr1_2:62296971-62296990 Msa0083240:three_prime_UTR 40.0%
GGTATGGACTCTAAATCTGA+AGG - chr1_2:62296987-62297006 Msa0083240:three_prime_UTR 40.0%
ACTGGAGTCTTCTTGTGTAT+TGG + chr1_2:62297078-62297097 None:intergenic 40.0%
! ACAGAGCTCAAGCAAGATTT+TGG - chr1_2:62297199-62297218 Msa0083240:exon 40.0%
! CAGAGCTCAAGCAAGATTTT+GGG - chr1_2:62297200-62297219 Msa0083240:exon 40.0%
CATAAATGACCAGCTTGACA+TGG - chr1_2:62297725-62297744 Msa0083240:intron 40.0%
CTTTAAGCACGCCAACAAAA+GGG - chr1_2:62297900-62297919 Msa0083240:intron 40.0%
! TGCATATGAGACCCTTTTGT+TGG + chr1_2:62297914-62297933 None:intergenic 40.0%
GGATCAATGCTTGAAGTTTC+CGG - chr1_2:62298081-62298100 Msa0083240:intron 40.0%
TCGCTCCAATAAATTATCCC+TGG + chr1_2:62298158-62298177 None:intergenic 40.0%
AGCATTGTAGACATAGCTCT+TGG - chr1_2:62298241-62298260 Msa0083240:intron 40.0%
TAAACCATAAATGCAAGCGG+GGG + chr1_2:62298336-62298355 None:intergenic 40.0%
!! GAGGTATTTTCTTTGATGGC+TGG + chr1_2:62298376-62298395 None:intergenic 40.0%
!!! TTTTTTTTTTGGTGGTGGCC+AGG - chr1_2:62298630-62298649 Msa0083240:CDS 40.0%
TATTTGACGGAAATCAAGGG+AGG + chr1_2:62298876-62298895 None:intergenic 40.0%
GACCCAAACTGTTGTTCAAT+CGG + chr1_2:62298993-62299012 None:intergenic 40.0%
! TCACGACTTAGAAGTCTTGT+CGG - chr1_2:62299011-62299030 Msa0083240:intron 40.0%
GGATTACTTGGTTCATGAGT+TGG + chr1_2:62299213-62299232 None:intergenic 40.0%
GAACCAAGTAATCCAAACTC+CGG - chr1_2:62299219-62299238 Msa0083240:intron 40.0%
AGATTTATTGCTCCGGAGTT+TGG + chr1_2:62299234-62299253 None:intergenic 40.0%
CAATGGGGCATATTAATGCA+AGG + chr1_2:62299362-62299381 None:intergenic 40.0%
CTTGCATTAATATGCCCCAT+TGG - chr1_2:62299360-62299379 Msa0083240:intron 40.0%
GTCCAACTGTGACACAAAAA+TGG - chr1_2:62299428-62299447 Msa0083240:intron 40.0%
!! GGATACCGGTTTAAACATGT+TGG - chr1_2:62299449-62299468 Msa0083240:intron 40.0%
!! TACCGGTTTAAACATGTTGG+GGG - chr1_2:62299452-62299471 Msa0083240:intron 40.0%
CCACTTGAACCTGACTATAA+AGG + chr1_2:62299500-62299519 None:intergenic 40.0%
CCTTTATAGTCAGGTTCAAG+TGG - chr1_2:62299497-62299516 Msa0083240:intron 40.0%
ACAGTTGGGTTACAAAAGGA+TGG + chr1_2:62299558-62299577 None:intergenic 40.0%
GGATACAGTTGGGTTACAAA+AGG + chr1_2:62299562-62299581 None:intergenic 40.0%
CTACGGATAAGGATACAGTT+GGG + chr1_2:62299572-62299591 None:intergenic 40.0%
TCTACGGATAAGGATACAGT+TGG + chr1_2:62299573-62299592 None:intergenic 40.0%
TTCTCACTATATGCGGTTAG+AGG - chr1_2:62299616-62299635 Msa0083240:intron 40.0%
!! GGTTAGAGGTGTCAATATCA+TGG - chr1_2:62299630-62299649 Msa0083240:intron 40.0%
! ATGTGGGCCTTTTAATCTTG+TGG + chr1_2:62299704-62299723 None:intergenic 40.0%
!!! CTTAGGGGCTTTTGATTTGT+GGG + chr1_2:62299736-62299755 None:intergenic 40.0%
!! CTTTAATTTAGTGGGCTTGG+TGG - chr1_2:62301473-62301492 Msa0083240:intron 40.0%
!! TTAATTTAGTGGGCTTGGTG+GGG - chr1_2:62301475-62301494 Msa0083240:intron 40.0%
!!! TTGGTGGGGACTTTTTTAAG+TGG - chr1_2:62301489-62301508 Msa0083240:intron 40.0%
!!! TGGTGGGGACTTTTTTAAGT+GGG - chr1_2:62301490-62301509 Msa0083240:intron 40.0%
! TGAGCTTAACTCAGTTGGTA+TGG - chr1_2:62301793-62301812 Msa0083240:intron 40.0%
!!! TTTTTTTTTTGTGGTGGCCG+GGG + chr1_2:62301854-62301873 None:intergenic 40.0%
TTTGGTAAACAATACCGTGG+AGG - chr1_2:62302131-62302150 Msa0083240:intron 40.0%
TTGGTAAACAATACCGTGGA+GGG - chr1_2:62302132-62302151 Msa0083240:intron 40.0%
TGTCCTTCCCTTAAAATCGA+CGG - chr1_2:62302160-62302179 Msa0083240:intron 40.0%
!! TCACATAAACTTTGAGACGG+TGG + chr1_2:62302229-62302248 None:intergenic 40.0%
AGCATATTTCCCTACACATG+GGG + chr1_2:62302837-62302856 None:intergenic 40.0%
GAGCATATTTCCCTACACAT+GGG + chr1_2:62302838-62302857 None:intergenic 40.0%
AGAGCATATTTCCCTACACA+TGG + chr1_2:62302839-62302858 None:intergenic 40.0%
! TTGCAATTATGGCCCCTTTT+TGG - chr1_2:62302915-62302934 Msa0083240:intron 40.0%
! TGCAATTATGGCCCCTTTTT+GGG - chr1_2:62302916-62302935 Msa0083240:intron 40.0%
GCAACTTATGCAAAGTTAGG+GGG - chr1_2:62303016-62303035 Msa0083240:intron 40.0%
CAATCTTCGACAACGTTTCA+TGG + chr1_2:62303170-62303189 None:intergenic 40.0%
GAAACGTTGTCGAAGATTGA+AGG - chr1_2:62303171-62303190 Msa0083240:intron 40.0%
TGATCCACCATGGAGTTATT+TGG + chr1_2:62303568-62303587 None:intergenic 40.0%
TTATAGATGGTGATCCACCA+TGG + chr1_2:62303578-62303597 None:intergenic 40.0%
! AAAAGGACTGGTGTGAGTTT+AGG - chr1_2:62303597-62303616 Msa0083240:intron 40.0%
AGGATAACACAACACAAGCT+AGG - chr1_2:62303617-62303636 Msa0083240:intron 40.0%
TAACACAACACAAGCTAGGA+TGG - chr1_2:62303621-62303640 Msa0083240:intron 40.0%
GGGTTATATTGAAGAAGCAG+AGG + chr1_2:62303763-62303782 None:intergenic 40.0%
TTTCCATCATGAACTAGCAC+TGG + chr1_2:62303802-62303821 None:intergenic 40.0%
GATATGGTCACACAACTCAT+TGG - chr1_2:62303864-62303883 Msa0083240:intron 40.0%
ATAGGCAAAGTTACACCATG+AGG - chr1_2:62304071-62304090 Msa0083240:CDS 40.0%
TGTCACCGTGACATTAAATC+TGG - chr1_2:62304150-62304169 Msa0083240:CDS 40.0%
GTCACCGTGACATTAAATCT+GGG - chr1_2:62304151-62304170 Msa0083240:CDS 40.0%
ACACATTGCCACATAACATC+TGG - chr1_2:62304183-62304202 Msa0083240:CDS 40.0%
CACATTGCCACATAACATCT+GGG - chr1_2:62304184-62304203 Msa0083240:CDS 40.0%
GATGTGTTGTATGTGTTGTG+TGG + chr1_2:62304210-62304229 None:intergenic 40.0%
CACAACACATACAACACATC+TGG - chr1_2:62304210-62304229 Msa0083240:CDS 40.0%
GTGACCCAGATTTAATGTCA+CGG - chr1_2:62304256-62304275 Msa0083240:CDS 40.0%
GTCACCGTGACATTAAATCT+GGG + chr1_2:62304151-62304170 None:intergenic 40.0%
TGTCACCGTGACATTAAATC+TGG + chr1_2:62304150-62304169 None:intergenic 40.0%
GCACTCCTCTATAGCAAAAT+TGG - chr1_2:62304823-62304842 Msa0083240:intron 40.0%
AGAAGGCCAGAGAGAATTTA+TGG - chr1_2:62304857-62304876 Msa0083240:intron 40.0%
GAAGGCCAGAGAGAATTTAT+GGG - chr1_2:62304858-62304877 Msa0083240:intron 40.0%
GATTCCCTCGATTGCATTTA+TGG - chr1_2:62305037-62305056 Msa0083240:intron 40.0%
!!! AGGGGTGTTTTCTTTGATGA+CGG + chr1_2:62305085-62305104 None:intergenic 40.0%
TGAAAAAGTCAAGGCAGTCA+AGG - chr1_2:62305143-62305162 Msa0083240:CDS 40.0%
TTTGTTCTCCACCTAAACAG+AGG - chr1_2:62305414-62305433 Msa0083240:CDS 40.0%
!! TCCACCTAAACAGAGGTATT+TGG - chr1_2:62305421-62305440 Msa0083240:CDS 40.0%
ACCAAATACCTCTGTTTAGG+TGG + chr1_2:62305425-62305444 None:intergenic 40.0%
! TAGCCCTTTCACTTTAAGGG+TGG - chr1_2:62296966-62296985 Msa0083240:three_prime_UTR 45.0%
TTTCCATCATGAACCAGCAC+TGG + chr1_2:62297096-62297115 None:intergenic 45.0%
CTTGCTTGAGCTCTGTCATA+TGG + chr1_2:62297195-62297214 None:intergenic 45.0%
! GCTTTAAGCACGCCAACAAA+AGG - chr1_2:62297899-62297918 Msa0083240:intron 45.0%
CTTGAAGTTTCCGGCAATTG+TGG - chr1_2:62298090-62298109 Msa0083240:intron 45.0%
CACAAACTTCTCTTGCTCAG+AGG + chr1_2:62298395-62298414 None:intergenic 45.0%
CTCTGAGCAAGAGAAGTTTG+TGG - chr1_2:62298393-62298412 Msa0083240:intron 45.0%
!! AGTCTTGTCGGTTCGTTCTT+CGG - chr1_2:62299023-62299042 Msa0083240:intron 45.0%
! GCAAACTGTGTTGATCCGTA+TGG + chr1_2:62299189-62299208 None:intergenic 45.0%
ATGAACACGAGACAAGGCAT+CGG + chr1_2:62299325-62299344 None:intergenic 45.0%
CTGTTCATGAACACGAGACA+AGG + chr1_2:62299331-62299350 None:intergenic 45.0%
CACCCCCAACATGTTTAAAC+CGG + chr1_2:62299457-62299476 None:intergenic 45.0%
TTGTGGGCTTGCATGAATGT+GGG + chr1_2:62299720-62299739 None:intergenic 45.0%
TTTGTGGGCTTGCATGAATG+TGG + chr1_2:62299721-62299740 None:intergenic 45.0%
!!! GCTTAGGGGCTTTTGATTTG+TGG + chr1_2:62299737-62299756 None:intergenic 45.0%
!! GGGCTTTAATTTAGTGGGCT+TGG - chr1_2:62301470-62301489 Msa0083240:intron 45.0%
CAACGTGAGCTTAACTCAGT+TGG - chr1_2:62301788-62301807 Msa0083240:intron 45.0%
GTCCTTCCCTTAAAATCGAC+GGG - chr1_2:62302161-62302180 Msa0083240:intron 45.0%
!!! GTGAGACCCGTCGATTTTAA+GGG + chr1_2:62302170-62302189 None:intergenic 45.0%
AAAAGTGATCCCCCATGTGT+AGG - chr1_2:62302824-62302843 Msa0083240:intron 45.0%
AAAGTGATCCCCCATGTGTA+GGG - chr1_2:62302825-62302844 Msa0083240:intron 45.0%
GCATATTTCCCTACACATGG+GGG + chr1_2:62302836-62302855 None:intergenic 45.0%
! GCAATTATGGCCCCTTTTTG+GGG - chr1_2:62302917-62302936 Msa0083240:intron 45.0%
!! CAGCAGTTTTTGGACGAAAG+AGG - chr1_2:62302956-62302975 Msa0083240:intron 45.0%
GACAAGGCCAAATAACTCCA+TGG - chr1_2:62303558-62303577 Msa0083240:intron 45.0%
AAGGCCAAATAACTCCATGG+TGG - chr1_2:62303561-62303580 Msa0083240:intron 45.0%
ATGGCAGAGGTGAAACTACA+TGG - chr1_2:62303640-62303659 Msa0083240:intron 45.0%
ACTCCAGTGCTAGTTCATGA+TGG - chr1_2:62303796-62303815 Msa0083240:intron 45.0%
!! CTACAAAAGGGGAAGCACTT+TGG - chr1_2:62304119-62304138 Msa0083240:CDS 45.0%
GTGGCCCAGATTTAATGTCA+CGG + chr1_2:62304158-62304177 None:intergenic 45.0%
ATGTGGCAATGTGTGTTGTG+TGG + chr1_2:62304177-62304196 None:intergenic 45.0%
!! CACAAAGGTGTTGTGTTGTG+TGG + chr1_2:62304237-62304256 None:intergenic 45.0%
AATTGGTGAAGAGCGAGAGA+AGG - chr1_2:62304840-62304859 Msa0083240:intron 45.0%
TCGCTCCCATAAATTCTCTC+TGG + chr1_2:62304866-62304885 None:intergenic 45.0%
!! GGGGTGTTTTCTTTGATGAC+GGG + chr1_2:62305084-62305103 None:intergenic 45.0%
!!! TTTTATTAAGTATTAATTTA+TGG + chr1_2:62298539-62298558 None:intergenic 5.0%
!! TTAATTATTGAATTTAAAAA+AGG - chr1_2:62298764-62298783 Msa0083240:intron 5.0%
!! TAATTATTGAATTTAAAAAA+GGG - chr1_2:62298765-62298784 Msa0083240:intron 5.0%
!! TAAGAAAAAAAATTATAATA+TGG - chr1_2:62301377-62301396 Msa0083240:intron 5.0%
!! AAGAAAAAAAATTATAATAT+GGG - chr1_2:62301378-62301397 Msa0083240:intron 5.0%
!!! TAAGATAAAATATTTTTTTA+TGG + chr1_2:62302006-62302025 None:intergenic 5.0%
!! AAAATAAAATATATAAAAGT+TGG - chr1_2:62302201-62302220 Msa0083240:intron 5.0%
!! ATAAAAAAAAATTAAGTTAA+AGG - chr1_2:62304657-62304676 Msa0083240:intron 5.0%
ACACAAGAAGACTCCAGTGC+TGG - chr1_2:62297080-62297099 Msa0083240:three_prime_UTR 50.0%
!! ACTCCAGTGCTGGTTCATGA+TGG - chr1_2:62297090-62297109 Msa0083240:three_prime_UTR 50.0%
GCAGGAAGCAATGAGTTGTG+TGG + chr1_2:62297168-62297187 None:intergenic 50.0%
GCTCTGTCATATGGATCAGC+AGG + chr1_2:62297186-62297205 None:intergenic 50.0%
TGTTGGCGTGCTTAAAGCGA+AGG + chr1_2:62297897-62297916 None:intergenic 50.0%
TGAAGAGCGGGAAAAGTCCA+GGG - chr1_2:62298138-62298157 Msa0083240:intron 50.0%
GATTCCCCCGCTTGCATTTA+TGG - chr1_2:62298329-62298348 Msa0083240:intron 50.0%
CATACGTCGTACGTTGTCGT+TGG + chr1_2:62298573-62298592 None:intergenic 50.0%
TCACGAGTTTGCGGCCTAAT+AGG + chr1_2:62299165-62299184 None:intergenic 50.0%
CCGTATGGATCACGAGTTTG+CGG + chr1_2:62299174-62299193 None:intergenic 50.0%
CCGCAAACTCGTGATCCATA+CGG - chr1_2:62299171-62299190 Msa0083240:intron 50.0%
GCTCCGGAGTTTGGATTACT+TGG + chr1_2:62299225-62299244 None:intergenic 50.0%
AAACATGTTGGGGGTGAGTC+TGG - chr1_2:62299461-62299480 Msa0083240:intron 50.0%
GCTGAATGACTCTGTCTCCA+TGG - chr1_2:62299519-62299538 Msa0083240:intron 50.0%
GTGTCAATATCATGGGGCCT+TGG - chr1_2:62299638-62299657 Msa0083240:intron 50.0%
! ATCATGGGGCCTTGGAGTTT+TGG - chr1_2:62299646-62299665 Msa0083240:intron 50.0%
!!! GACCCGTCGATTTTAAGGGA+AGG + chr1_2:62302166-62302185 None:intergenic 50.0%
!!! CGTGAGACCCGTCGATTTTA+AGG + chr1_2:62302171-62302190 None:intergenic 50.0%
! GGCGTCTTCTCAGCAGTTTT+TGG - chr1_2:62302946-62302965 Msa0083240:intron 50.0%
GACAACGTTTCATGGGTGCA+TGG + chr1_2:62303162-62303181 None:intergenic 50.0%
AACACAAGCTAGGATGGCAG+AGG - chr1_2:62303627-62303646 Msa0083240:intron 50.0%
! ACAGAGCTCAAGCCCCATTT+TGG - chr1_2:62303905-62303924 Msa0083240:intron 50.0%
! CAGAGCTCAAGCCCCATTTT+GGG - chr1_2:62303906-62303925 Msa0083240:intron 50.0%
TGTGTGGCCCAGATGTTATG+TGG + chr1_2:62304194-62304213 None:intergenic 50.0%
CACCAACTTCTCTTGGTCAG+GGG + chr1_2:62305103-62305122 None:intergenic 50.0%
CCACCAACTTCTCTTGGTCA+GGG + chr1_2:62305104-62305123 None:intergenic 50.0%
GAAAGGCCACCAACTTCTCT+TGG + chr1_2:62305110-62305129 None:intergenic 50.0%
CGATGGAACGCCACAATTGC+CGG + chr1_2:62298103-62298122 None:intergenic 55.0%
GTGAAGAGCGGGAAAAGTCC+AGG - chr1_2:62298137-62298156 Msa0083240:intron 55.0%
GCCCCAGCCCACATAGTAAT+GGG - chr1_2:62299668-62299687 Msa0083240:intron 55.0%
! CCCCATTACTATGTGGGCTG+GGG + chr1_2:62299672-62299691 None:intergenic 55.0%
CCCCAGCCCACATAGTAATG+GGG - chr1_2:62299669-62299688 Msa0083240:intron 55.0%
GCCCCATTACTATGTGGGCT+GGG + chr1_2:62299673-62299692 None:intergenic 55.0%
AGCCCCATTACTATGTGGGC+TGG + chr1_2:62299674-62299693 None:intergenic 55.0%
GAAGGACATTAGGCCCTCCA+CGG + chr1_2:62302148-62302167 None:intergenic 55.0%
ACGCCACGTGTCCCCAAAAA+GGG + chr1_2:62302931-62302950 None:intergenic 55.0%
GCTCTGTCATAGGGATCAGC+AGG + chr1_2:62303892-62303911 None:intergenic 55.0%
GGGGCTTGAGCTCTGTCATA+GGG + chr1_2:62303901-62303920 None:intergenic 55.0%
TGGGGCTTGAGCTCTGTCAT+AGG + chr1_2:62303902-62303921 None:intergenic 55.0%
CACCCCTGACCAAGAGAAGT+TGG - chr1_2:62305098-62305117 Msa0083240:intron 55.0%
CCCTGACCAAGAGAAGTTGG+TGG - chr1_2:62305101-62305120 Msa0083240:intron 55.0%
GCCACCAACTTCTCTTGGTC+AGG + chr1_2:62305105-62305124 None:intergenic 55.0%
! GGAGCGACTCGGAGTTGTTG+AGG - chr1_2:62298171-62298190 Msa0083240:intron 60.0%
GGCCCCAGCCCACATAGTAA+TGG - chr1_2:62299667-62299686 Msa0083240:intron 60.0%
AAGGTACGGGGTTCGAACCC+CGG - chr1_2:62301834-62301853 Msa0083240:intron 60.0%
CGCCACGTGTCCCCAAAAAG+GGG + chr1_2:62302930-62302949 None:intergenic 60.0%
GACGCCACGTGTCCCCAAAA+AGG + chr1_2:62302932-62302951 None:intergenic 60.0%
TGGTGGCCAGGTTCGAACCC+CGG - chr1_2:62298642-62298661 Msa0083240:CDS 65.0%
CAAGGTCCGGGGTTCGAACC+TGG + chr1_2:62298651-62298670 None:intergenic 65.0%
GGGCTGGGGCCAAAACTCCA+AGG + chr1_2:62299658-62299677 None:intergenic 65.0%
!! GGCCCCTTTTTGGGGACACG+TGG - chr1_2:62302925-62302944 Msa0083240:intron 65.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 62296916 62305464 62296916 ID=Msa0083240;Name=Msa0083240
chr1_2 mRNA 62296916 62305464 62296916 ID=Msa0083240-mRNA-1;Parent=Msa0083240;Name=Msa0083240-mRNA-1;_AED=0.18;_eAED=0.18;_QI=0|0.33|0.25|1|0.66|0.5|4|288|449
chr1_2 exon 62296916 62297572 62296916 ID=Msa0083240-mRNA-1:exon:20770;Parent=Msa0083240-mRNA-1
chr1_2 exon 62298432 62298761 62298432 ID=Msa0083240-mRNA-1:exon:20769;Parent=Msa0083240-mRNA-1
chr1_2 exon 62303960 62304283 62303960 ID=Msa0083240-mRNA-1:exon:20768;Parent=Msa0083240-mRNA-1
chr1_2 exon 62305138 62305464 62305138 ID=Msa0083240-mRNA-1:exon:20767;Parent=Msa0083240-mRNA-1
chr1_2 CDS 62305138 62305464 62305138 ID=Msa0083240-mRNA-1:cds;Parent=Msa0083240-mRNA-1
chr1_2 CDS 62303960 62304283 62303960 ID=Msa0083240-mRNA-1:cds;Parent=Msa0083240-mRNA-1
chr1_2 CDS 62298432 62298761 62298432 ID=Msa0083240-mRNA-1:cds;Parent=Msa0083240-mRNA-1
chr1_2 CDS 62297204 62297572 62297204 ID=Msa0083240-mRNA-1:cds;Parent=Msa0083240-mRNA-1
chr1_2 three_prime_UTR 62296916 62297203 62296916 ID=Msa0083240-mRNA-1:three_prime_utr;Parent=Msa0083240-mRNA-1
Gene Sequence

>Msa0083240

ATGCACAAGCTAATTAAGATGGCAGAGATAAAACTACATGGATCTTGGTATAGCCCTTTCACTTTAAGGGTGGTATGGACTCTAAATCTGAAGGGTATACCATATGATAGTATAGAGGAAGATCACTTCAATAGGACTCCTCAACTTCTTCAATATAATCCAATACACAAGAAGACTCCAGTGCTGGTTCATGATGGAAAACCTATATGTGAGTCCATGATTATTGTTGAATACATTGATGAGATATGGCCACACAACTCATTGCTTCCTGCTGATCCATATGACAGAGCTCAAGCAAGATTTTGGGTTAAATATGTTGATGACATGTTTCCGGCAATTGTGGCGTTCCATCGAAGCATAATTAAAGGTGAAGAGCGGGAAAAGTCCAGGGATAATTTATTGGAGCGACTCGGAGTTGTTGAGGATCAGTGCTTGAATGATCAGAATAAGTTCTATGGGGGAGAAACCATTAGCATTGTAGACATAGCTCTTGGATCTTTTGTGAAATTTATTGAGGTTCAAGAAGATATGTTTAACGTGAAGATCTTGAAAAGTGAGAGATTCCCCCGCTTGCATTTATGGTTTAATAATTTCAAGGATGTTCCAGCCATCAAAGAAAATACCTCTGAGCAAGAGAAGTTTGTGGCTTATGATAACACAACACAAGCTAGGATGGCAGAGGTGAAACTACATGGATTTTGGTATAGTCCTTTTACTTTAAGGGTAGTATGGACCTTAAATTTGAAAGGTATACCATATGAGAACATAGAGGAAGATCGCTTCAATAAAAGTCCTCTGCTTCTTCAATATAACCCAATACACAAGAAAACTCCAGTGCTAGTTCATGATGGAAAACCCATATGTGAGTCCATGATCATTGTTGAATACATTGATGAGATATGGTCACACAACTCATTGGTTCCTGCTGATCCCTATGACAGAGCTCAAGCCCCATTTTGGGTTAAATATGTTGATGAATTGATTTCGGCAATTGCGGCACTCCTCTATAGCAAAATTGGTGAAGAGCGAGAGAAGGCCAGAGAGAATTTATGGGAGCGACTCAGAGTTATTGAAGATAAGTGTTTGGATGATCAAAAGAAATTTTATGGGGGAGACACCATTAACATTGTAGACATAGCTCTTGGATCTTTTATCAAATTTATTGAGGTTCAGGAAGATATGTTTGAAGTGAAGATCTTGCAAAGTGAGAGATTCCCTCGATTGCATTTATGGTTTAATAATTTTAAGGATGTTCCCGTCATCAAAGAAAACACCCCTGACCAAGAGAAGTTGGTGGCCTTTCTTAATTCTCTAATTGAAAAAGTCAAGGCAGTCAAGGCATCTTCTTGA
Protein sequence

>Msa0083240

MHKLIKMAEIKLHGSWYSPFTLRVVWTLNLKGIPYDSIEEDHFNRTPQLLQYNPIHKKTPVLVHDGKPICESMIIVEYIDEIWPHNSLLPADPYDRAQARFWVKYVDDMFPAIVAFHRSIIKGEEREKSRDNLLERLGVVEDQCLNDQNKFYGGETISIVDIALGSFVKFIEVQEDMFNVKILKSERFPRLHLWFNNFKDVPAIKENTSEQEKFVAYDNTTQARMAEVKLHGFWYSPFTLRVVWTLNLKGIPYENIEEDRFNKSPLLLQYNPIHKKTPVLVHDGKPICESMIIVEYIDEIWSHNSLVPADPYDRAQAPFWVKYVDELISAIAALLYSKIGEEREKARENLWERLRVIEDKCLDDQKKFYGGDTINIVDIALGSFIKFIEVQEDMFEVKILQSERFPRLHLWFNNFKDVPVIKENTPDQEKLVAFLNSLIEKVKAVKASS*