Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0370490 | XP_013460852.1 | 93.210 | 162 | 11 | 0 | 1 | 162 | 1 | 162 | 1.35e-108 | 316 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0370490 | sp|P33050|PSC13_MAIZE | 39.865 | 148 | 89 | 0 | 8 | 155 | 15 | 162 | 5.74e-29 | 107 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0370490 | B7FN25 | 93.210 | 162 | 11 | 0 | 1 | 162 | 1 | 162 | 6.45e-109 | 316 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0209140 | Msa0370490 | 0.801296 | 9.628004e-49 | -8.615850e-47 |
| Msa0370490 | Msa0417970 | 0.965041 | 4.295429e-124 | -8.615850e-47 |
| Msa0370490 | Msa0479420 | 0.834938 | 2.243587e-56 | -8.615850e-47 |
| Msa0370490 | Msa1035060 | 0.805875 | 1.080779e-49 | -8.615850e-47 |
| Msa0370490 | Msa1083700 | 0.829388 | 5.294555e-55 | -8.615850e-47 |
| Msa0370490 | Msa1381260 | 0.802484 | 5.487908e-49 | -8.615850e-47 |
| Msa0370490 | Msa1389900 | 0.800018 | 1.754835e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0370490 | MtrunA17_Chr3g0115561 | 93.210 | 162 | 11 | 0 | 1 | 162 | 1 | 162 | 1.24e-112 | 316 |
| Msa0370490 | MtrunA17_Chr3g0124301 | 41.406 | 128 | 73 | 2 | 28 | 153 | 25 | 152 | 3.22e-31 | 110 |
| Msa0370490 | MtrunA17_Chr2g0283801 | 34.177 | 158 | 100 | 2 | 1 | 155 | 1 | 157 | 2.71e-25 | 95.1 |
| Msa0370490 | MtrunA17_Chr2g0316111 | 33.594 | 128 | 82 | 2 | 28 | 155 | 43 | 167 | 1.08e-18 | 78.2 |
| Msa0370490 | MtrunA17_Chr2g0316151 | 33.594 | 128 | 82 | 2 | 28 | 155 | 43 | 167 | 1.19e-18 | 78.2 |
| Msa0370490 | MtrunA17_Chr2g0316161 | 28.481 | 158 | 103 | 3 | 5 | 155 | 7 | 161 | 2.26e-15 | 69.7 |
| Msa0370490 | MtrunA17_Chr2g0316121 | 28.485 | 165 | 106 | 4 | 5 | 160 | 7 | 168 | 2.33e-15 | 69.3 |
| Msa0370490 | MtrunA17_Chr2g0316051 | 28.906 | 128 | 88 | 3 | 28 | 155 | 36 | 160 | 5.71e-12 | 60.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0370490 | AT4G08685.1 | 49.367 | 158 | 80 | 0 | 3 | 160 | 2 | 159 | 3.67e-55 | 171 |
| Msa0370490 | AT1G78040.1 | 38.788 | 165 | 96 | 3 | 3 | 162 | 2 | 166 | 5.03e-34 | 118 |
| Msa0370490 | AT1G78040.3 | 38.788 | 165 | 96 | 3 | 3 | 162 | 2 | 166 | 5.03e-34 | 118 |
| Msa0370490 | AT1G78040.2 | 38.788 | 165 | 96 | 3 | 3 | 162 | 2 | 166 | 5.03e-34 | 118 |
| Msa0370490 | AT5G10130.1 | 40.000 | 150 | 87 | 1 | 5 | 154 | 8 | 154 | 7.02e-30 | 107 |
| Msa0370490 | AT4G18596.1 | 32.317 | 164 | 102 | 3 | 1 | 155 | 1 | 164 | 1.63e-23 | 91.3 |
| Msa0370490 | AT4G18596.2 | 32.317 | 164 | 102 | 3 | 1 | 155 | 47 | 210 | 3.81e-23 | 91.3 |
| Msa0370490 | AT5G45880.1 | 31.325 | 166 | 103 | 3 | 1 | 155 | 1 | 166 | 3.47e-22 | 87.8 |
| Msa0370490 | AT1G29140.1 | 35.075 | 134 | 83 | 2 | 26 | 155 | 30 | 163 | 1.92e-20 | 83.2 |
Find 45 sgRNAs with CRISPR-Local
Find 162 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTCAAGCAGAAAGGGTTCT+TGG | 0.299969 | 3_1:-68291294 | None:intergenic |
| CAAGAACCCTTTCTGCTTGA+AGG | 0.359097 | 3_1:+68291295 | Msa0370490:CDS |
| ATTGGCAAACCTGTCATTAG+AGG | 0.373550 | 3_1:-68292377 | None:intergenic |
| CCAGTTGCATCAGTCTTCCC+TGG | 0.379925 | 3_1:-68292211 | None:intergenic |
| AAGCAGAAAGGGTTCTTGGC+TGG | 0.404947 | 3_1:-68291290 | None:intergenic |
| CCTCAAGCAAATGCAAGAAT+TGG | 0.407401 | 3_1:+68292447 | Msa0370490:CDS |
| AGAGGCAATGCCGTTGTAAC+GGG | 0.421384 | 3_1:-68292359 | None:intergenic |
| AGTTGCAGCGAAAGAGCACC+TGG | 0.422043 | 3_1:+68292310 | Msa0370490:CDS |
| ATGGCAGAGGAGGTTGCTTC+TGG | 0.422829 | 3_1:+68292412 | Msa0370490:CDS |
| CTTTCGCTGCAACTACGCTC+AGG | 0.426036 | 3_1:-68292301 | None:intergenic |
| TGTTCTTCCAGCGATGGTTA+TGG | 0.427430 | 3_1:+68291259 | Msa0370490:CDS |
| TCTGCTATCACTCACATTGC+TGG | 0.439139 | 3_1:+68291359 | Msa0370490:CDS |
| GTATGTGACCCTTGCCGTGC+TGG | 0.440078 | 3_1:+68291326 | Msa0370490:CDS |
| CTTAGGTGCCGAGGTTATGC+TGG | 0.455452 | 3_1:+68292147 | Msa0370490:intron |
| AGCAGAAAGGGTTCTTGGCT+GGG | 0.458995 | 3_1:-68291289 | None:intergenic |
| CCAGGGAAGACTGATGCAAC+TGG | 0.462248 | 3_1:+68292211 | Msa0370490:CDS |
| ATATACAATCTATGTGGATC+AGG | 0.471477 | 3_1:+68292237 | Msa0370490:CDS |
| CACGACCCTTCAAGCAGAAA+GGG | 0.481464 | 3_1:-68291301 | None:intergenic |
| CCAATTCTTGCATTTGCTTG+AGG | 0.488555 | 3_1:-68292447 | None:intergenic |
| AGGGTTCTTGGCTGGGCGAA+TGG | 0.488766 | 3_1:-68291282 | None:intergenic |
| GAAGTTGTGTTCTCAAAGCC+AGG | 0.495130 | 3_1:+68292193 | Msa0370490:CDS |
| AAGAACCCTTTCTGCTTGAA+GGG | 0.515228 | 3_1:+68291296 | Msa0370490:CDS |
| TAGAGGCAATGCCGTTGTAA+CGG | 0.528529 | 3_1:-68292360 | None:intergenic |
| TGCCAATGCAATGTTATACA+TGG | 0.534147 | 3_1:+68292393 | Msa0370490:CDS |
| ACACGACCCTTCAAGCAGAA+AGG | 0.545423 | 3_1:-68291302 | None:intergenic |
| CGAATGGCCATAACCATCGC+TGG | 0.546740 | 3_1:-68291266 | None:intergenic |
| TTTCGCTGCAACTACGCTCA+GGG | 0.560515 | 3_1:-68292300 | None:intergenic |
| ACGGCATTGCCTCTAATGAC+AGG | 0.562012 | 3_1:+68292368 | Msa0370490:CDS |
| CTTGTGTGTTCTTCCAGCGA+TGG | 0.573398 | 3_1:+68291253 | Msa0370490:CDS |
| CTTGCATTCCAGCATAACCT+CGG | 0.573523 | 3_1:-68292155 | None:intergenic |
| TGCCATGTATAACATTGCAT+TGG | 0.575486 | 3_1:-68292395 | None:intergenic |
| GTTATTCTCACCCGTTACAA+CGG | 0.576439 | 3_1:+68292349 | Msa0370490:CDS |
| TGCAATGTTATACATGGCAG+AGG | 0.577927 | 3_1:+68292399 | Msa0370490:CDS |
| ACACGTGCTTGGTCACGCCC+AGG | 0.584341 | 3_1:-68292328 | None:intergenic |
| GTTTCATAACCAGCACGGCA+AGG | 0.587642 | 3_1:-68291335 | None:intergenic |
| GGTTGCTTCTGGCTGTGCTG+AGG | 0.590498 | 3_1:+68292423 | Msa0370490:CDS |
| TGGAGAATATACAATCTATG+TGG | 0.605358 | 3_1:+68292231 | Msa0370490:CDS |
| ATGAATCTGCTTAGGTGCCG+AGG | 0.607207 | 3_1:+68292138 | Msa0370490:intron |
| TTTCATAACCAGCACGGCAA+GGG | 0.614551 | 3_1:-68291334 | None:intergenic |
| GGGTGAGAATAACACGTGCT+TGG | 0.627588 | 3_1:-68292339 | None:intergenic |
| AATGTTATACATGGCAGAGG+AGG | 0.630027 | 3_1:+68292402 | Msa0370490:CDS |
| AAGTTGTGTTCTCAAAGCCA+GGG | 0.636901 | 3_1:+68292194 | Msa0370490:CDS |
| TTATGCTGGAATGCAAGCAA+AGG | 0.653268 | 3_1:+68292161 | Msa0370490:CDS |
| CAGAAGTTTCATAACCAGCA+CGG | 0.663268 | 3_1:-68291340 | None:intergenic |
| GTTGCAGCGAAAGAGCACCT+GGG | 0.708218 | 3_1:+68292311 | Msa0370490:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATATCTTTGTTAATTAA+TGG | + | chr3_1:68291688-68291707 | Msa0370490:intron | 10.0% |
| !!! | TTTAATTAGAAGTATAAAAA+AGG | + | chr3_1:68292038-68292057 | Msa0370490:intron | 10.0% |
| !!! | TTAATTAGAAGTATAAAAAA+GGG | + | chr3_1:68292039-68292058 | Msa0370490:intron | 10.0% |
| !! | AAAATATCTTTGTTAATTAA+TGG | + | chr3_1:68291688-68291707 | Msa0370490:intron | 10.0% |
| !!! | TTTAATTAGAAGTATAAAAA+AGG | + | chr3_1:68292038-68292057 | Msa0370490:intron | 10.0% |
| !!! | TTAATTAGAAGTATAAAAAA+GGG | + | chr3_1:68292039-68292058 | Msa0370490:intron | 10.0% |
| !!! | ACTTTAAATTCCTTAATTTT+TGG | + | chr3_1:68291479-68291498 | Msa0370490:intron | 15.0% |
| !! | TATTATATGATAGAACATTA+TGG | + | chr3_1:68291931-68291950 | Msa0370490:intron | 15.0% |
| !! | ATTATATGATAGAACATTAT+GGG | + | chr3_1:68291932-68291951 | Msa0370490:intron | 15.0% |
| !!! | ACTTTAAATTCCTTAATTTT+TGG | + | chr3_1:68291479-68291498 | Msa0370490:intron | 15.0% |
| !! | TATTATATGATAGAACATTA+TGG | + | chr3_1:68291931-68291950 | Msa0370490:intron | 15.0% |
| !! | ATTATATGATAGAACATTAT+GGG | + | chr3_1:68291932-68291951 | Msa0370490:intron | 15.0% |
| !! | TTGAATGAAAAACTTAAACT+TGG | - | chr3_1:68291422-68291441 | None:intergenic | 20.0% |
| !! | ATAGTGAAATTAAACCAAAA+GGG | - | chr3_1:68291454-68291473 | None:intergenic | 20.0% |
| !! | AATAGTGAAATTAAACCAAA+AGG | - | chr3_1:68291455-68291474 | None:intergenic | 20.0% |
| !!! | AATTCCTTAATTTTTGGAAA+TGG | + | chr3_1:68291485-68291504 | Msa0370490:intron | 20.0% |
| !!! | TCAATTTTGCTTTAGATTTT+AGG | + | chr3_1:68291521-68291540 | Msa0370490:intron | 20.0% |
| !!! | CAATTTTGCTTTAGATTTTA+GGG | + | chr3_1:68291522-68291541 | Msa0370490:intron | 20.0% |
| !! | TTCACAAATTAGTGTAATAT+AGG | + | chr3_1:68291616-68291635 | Msa0370490:intron | 20.0% |
| !! | TCACAAATTAGTGTAATATA+GGG | + | chr3_1:68291617-68291636 | Msa0370490:intron | 20.0% |
| !! | ATCTATTGTTTCAAATAATC+TGG | - | chr3_1:68291770-68291789 | None:intergenic | 20.0% |
| !! | CTTATAATTTATAATCCTCA+TGG | + | chr3_1:68292066-68292085 | Msa0370490:intron | 20.0% |
| !! | TTGAATGAAAAACTTAAACT+TGG | - | chr3_1:68291422-68291441 | None:intergenic | 20.0% |
| !! | ATAGTGAAATTAAACCAAAA+GGG | - | chr3_1:68291454-68291473 | None:intergenic | 20.0% |
| !! | AATAGTGAAATTAAACCAAA+AGG | - | chr3_1:68291455-68291474 | None:intergenic | 20.0% |
| !!! | AATTCCTTAATTTTTGGAAA+TGG | + | chr3_1:68291485-68291504 | Msa0370490:intron | 20.0% |
| !!! | TCAATTTTGCTTTAGATTTT+AGG | + | chr3_1:68291521-68291540 | Msa0370490:intron | 20.0% |
| !!! | CAATTTTGCTTTAGATTTTA+GGG | + | chr3_1:68291522-68291541 | Msa0370490:intron | 20.0% |
| !! | TTCACAAATTAGTGTAATAT+AGG | + | chr3_1:68291616-68291635 | Msa0370490:intron | 20.0% |
| !! | TCACAAATTAGTGTAATATA+GGG | + | chr3_1:68291617-68291636 | Msa0370490:intron | 20.0% |
| !! | ATCTATTGTTTCAAATAATC+TGG | - | chr3_1:68291770-68291789 | None:intergenic | 20.0% |
| !! | CTTATAATTTATAATCCTCA+TGG | + | chr3_1:68292066-68292085 | Msa0370490:intron | 20.0% |
| ! | AACACCATTTCCAAAAATTA+AGG | - | chr3_1:68291492-68291511 | None:intergenic | 25.0% |
| ! | TTTGATTAATGAATCTGCTT+AGG | + | chr3_1:68292130-68292149 | Msa0370490:intron | 25.0% |
| ! | AACACCATTTCCAAAAATTA+AGG | - | chr3_1:68291492-68291511 | None:intergenic | 25.0% |
| ! | TTTGATTAATGAATCTGCTT+AGG | + | chr3_1:68292130-68292149 | Msa0370490:intron | 25.0% |
| AAGAGATCTGAGAGTAAAAA+GGG | - | chr3_1:68291389-68291408 | None:intergenic | 30.0% | |
| AAAGAGATCTGAGAGTAAAA+AGG | - | chr3_1:68291390-68291409 | None:intergenic | 30.0% | |
| !!! | TTCAAATTTGTTGACCCTTT+TGG | + | chr3_1:68291437-68291456 | Msa0370490:intron | 30.0% |
| !!! | TGCTTTAGATTTTAGGGTTT+AGG | + | chr3_1:68291528-68291547 | Msa0370490:intron | 30.0% |
| !!! | GCTTTAGATTTTAGGGTTTA+GGG | + | chr3_1:68291529-68291548 | Msa0370490:intron | 30.0% |
| !!! | AACCACTCTTTTTGAGATAA+TGG | + | chr3_1:68291573-68291592 | Msa0370490:intron | 30.0% |
| ATGTTAAATGAATGACCTTG+CGG | + | chr3_1:68291729-68291748 | Msa0370490:intron | 30.0% | |
| TTGCTTCTAATGTAAAGATC+TGG | + | chr3_1:68291884-68291903 | Msa0370490:intron | 30.0% | |
| TGTTTGATTCATGTAACCAT+TGG | + | chr3_1:68291957-68291976 | Msa0370490:intron | 30.0% | |
| TGTGTTAACAAACTACCATA+AGG | - | chr3_1:68292102-68292121 | None:intergenic | 30.0% | |
| TGGAGAATATACAATCTATG+TGG | + | chr3_1:68292231-68292250 | Msa0370490:CDS | 30.0% | |
| ATATACAATCTATGTGGATC+AGG | + | chr3_1:68292237-68292256 | Msa0370490:CDS | 30.0% | |
| AAGAGATCTGAGAGTAAAAA+GGG | - | chr3_1:68291389-68291408 | None:intergenic | 30.0% | |
| AAAGAGATCTGAGAGTAAAA+AGG | - | chr3_1:68291390-68291409 | None:intergenic | 30.0% | |
| !!! | TTCAAATTTGTTGACCCTTT+TGG | + | chr3_1:68291437-68291456 | Msa0370490:intron | 30.0% |
| !!! | TGCTTTAGATTTTAGGGTTT+AGG | + | chr3_1:68291528-68291547 | Msa0370490:intron | 30.0% |
| !!! | GCTTTAGATTTTAGGGTTTA+GGG | + | chr3_1:68291529-68291548 | Msa0370490:intron | 30.0% |
| !!! | AACCACTCTTTTTGAGATAA+TGG | + | chr3_1:68291573-68291592 | Msa0370490:intron | 30.0% |
| ATGTTAAATGAATGACCTTG+CGG | + | chr3_1:68291729-68291748 | Msa0370490:intron | 30.0% | |
| TTGCTTCTAATGTAAAGATC+TGG | + | chr3_1:68291884-68291903 | Msa0370490:intron | 30.0% | |
| TGTTTGATTCATGTAACCAT+TGG | + | chr3_1:68291957-68291976 | Msa0370490:intron | 30.0% | |
| TGTGTTAACAAACTACCATA+AGG | - | chr3_1:68292102-68292121 | None:intergenic | 30.0% | |
| TGGAGAATATACAATCTATG+TGG | + | chr3_1:68292231-68292250 | Msa0370490:CDS | 30.0% | |
| ATATACAATCTATGTGGATC+AGG | + | chr3_1:68292237-68292256 | Msa0370490:CDS | 30.0% | |
| AGAGATCTGAGAGTAAAAAG+GGG | - | chr3_1:68291388-68291407 | None:intergenic | 35.0% | |
| CTCCATTATCTCAAAAAGAG+TGG | - | chr3_1:68291578-68291597 | None:intergenic | 35.0% | |
| TAAGGAAAATGTTCTCCATG+AGG | - | chr3_1:68292084-68292103 | None:intergenic | 35.0% | |
| ! | CATGGAGAACATTTTCCTTA+TGG | + | chr3_1:68292084-68292103 | Msa0370490:intron | 35.0% |
| TGCCAATGCAATGTTATACA+TGG | + | chr3_1:68292393-68292412 | Msa0370490:CDS | 35.0% | |
| TGCCATGTATAACATTGCAT+TGG | - | chr3_1:68292398-68292417 | None:intergenic | 35.0% | |
| AGAGATCTGAGAGTAAAAAG+GGG | - | chr3_1:68291388-68291407 | None:intergenic | 35.0% | |
| CTCCATTATCTCAAAAAGAG+TGG | - | chr3_1:68291578-68291597 | None:intergenic | 35.0% | |
| TAAGGAAAATGTTCTCCATG+AGG | - | chr3_1:68292084-68292103 | None:intergenic | 35.0% | |
| ! | CATGGAGAACATTTTCCTTA+TGG | + | chr3_1:68292084-68292103 | Msa0370490:intron | 35.0% |
| TGCCAATGCAATGTTATACA+TGG | + | chr3_1:68292393-68292412 | Msa0370490:CDS | 35.0% | |
| TGCCATGTATAACATTGCAT+TGG | - | chr3_1:68292398-68292417 | None:intergenic | 35.0% | |
| AAGAACCCTTTCTGCTTGAA+GGG | + | chr3_1:68291296-68291315 | Msa0370490:CDS | 40.0% | |
| CAGAAGTTTCATAACCAGCA+CGG | - | chr3_1:68291343-68291362 | None:intergenic | 40.0% | |
| !!! | AGATTTTAGGGTTTAGGGTG+TGG | + | chr3_1:68291534-68291553 | Msa0370490:intron | 40.0% |
| ! | ATGGAGTATCAGATCTGATC+TGG | + | chr3_1:68291592-68291611 | Msa0370490:intron | 40.0% |
| TTACAAGATTTCACTCCGCA+AGG | - | chr3_1:68291747-68291766 | None:intergenic | 40.0% | |
| ACAACAGTAGCAACAACCAA+TGG | - | chr3_1:68291976-68291995 | None:intergenic | 40.0% | |
| TTATGCTGGAATGCAAGCAA+AGG | + | chr3_1:68292161-68292180 | Msa0370490:CDS | 40.0% | |
| AAGTTGTGTTCTCAAAGCCA+GGG | + | chr3_1:68292194-68292213 | Msa0370490:CDS | 40.0% | |
| GTTATTCTCACCCGTTACAA+CGG | + | chr3_1:68292349-68292368 | Msa0370490:CDS | 40.0% | |
| ATTGGCAAACCTGTCATTAG+AGG | - | chr3_1:68292380-68292399 | None:intergenic | 40.0% | |
| TGCAATGTTATACATGGCAG+AGG | + | chr3_1:68292399-68292418 | Msa0370490:CDS | 40.0% | |
| AATGTTATACATGGCAGAGG+AGG | + | chr3_1:68292402-68292421 | Msa0370490:CDS | 40.0% | |
| CCAATTCTTGCATTTGCTTG+AGG | - | chr3_1:68292450-68292469 | None:intergenic | 40.0% | |
| CCTCAAGCAAATGCAAGAAT+TGG | + | chr3_1:68292447-68292466 | Msa0370490:CDS | 40.0% | |
| AAGAACCCTTTCTGCTTGAA+GGG | + | chr3_1:68291296-68291315 | Msa0370490:CDS | 40.0% | |
| CAGAAGTTTCATAACCAGCA+CGG | - | chr3_1:68291343-68291362 | None:intergenic | 40.0% | |
| !!! | AGATTTTAGGGTTTAGGGTG+TGG | + | chr3_1:68291534-68291553 | Msa0370490:intron | 40.0% |
| ! | ATGGAGTATCAGATCTGATC+TGG | + | chr3_1:68291592-68291611 | Msa0370490:intron | 40.0% |
| TTACAAGATTTCACTCCGCA+AGG | - | chr3_1:68291747-68291766 | None:intergenic | 40.0% | |
| ACAACAGTAGCAACAACCAA+TGG | - | chr3_1:68291976-68291995 | None:intergenic | 40.0% | |
| TTATGCTGGAATGCAAGCAA+AGG | + | chr3_1:68292161-68292180 | Msa0370490:CDS | 40.0% | |
| AAGTTGTGTTCTCAAAGCCA+GGG | + | chr3_1:68292194-68292213 | Msa0370490:CDS | 40.0% | |
| GTTATTCTCACCCGTTACAA+CGG | + | chr3_1:68292349-68292368 | Msa0370490:CDS | 40.0% | |
| ATTGGCAAACCTGTCATTAG+AGG | - | chr3_1:68292380-68292399 | None:intergenic | 40.0% | |
| TGCAATGTTATACATGGCAG+AGG | + | chr3_1:68292399-68292418 | Msa0370490:CDS | 40.0% | |
| AATGTTATACATGGCAGAGG+AGG | + | chr3_1:68292402-68292421 | Msa0370490:CDS | 40.0% | |
| CCAATTCTTGCATTTGCTTG+AGG | - | chr3_1:68292450-68292469 | None:intergenic | 40.0% | |
| CCTCAAGCAAATGCAAGAAT+TGG | + | chr3_1:68292447-68292466 | Msa0370490:CDS | 40.0% | |
| TGTTCTTCCAGCGATGGTTA+TGG | + | chr3_1:68291259-68291278 | Msa0370490:CDS | 45.0% | |
| CTTCAAGCAGAAAGGGTTCT+TGG | - | chr3_1:68291297-68291316 | None:intergenic | 45.0% | |
| CAAGAACCCTTTCTGCTTGA+AGG | + | chr3_1:68291295-68291314 | Msa0370490:CDS | 45.0% | |
| TTTCATAACCAGCACGGCAA+GGG | - | chr3_1:68291337-68291356 | None:intergenic | 45.0% | |
| TCTGCTATCACTCACATTGC+TGG | + | chr3_1:68291359-68291378 | Msa0370490:CDS | 45.0% | |
| CTTGCATTCCAGCATAACCT+CGG | - | chr3_1:68292158-68292177 | None:intergenic | 45.0% | |
| GAAGTTGTGTTCTCAAAGCC+AGG | + | chr3_1:68292193-68292212 | Msa0370490:CDS | 45.0% | |
| TAGAGGCAATGCCGTTGTAA+CGG | - | chr3_1:68292363-68292382 | None:intergenic | 45.0% | |
| TGTTCTTCCAGCGATGGTTA+TGG | + | chr3_1:68291259-68291278 | Msa0370490:CDS | 45.0% | |
| CTTCAAGCAGAAAGGGTTCT+TGG | - | chr3_1:68291297-68291316 | None:intergenic | 45.0% | |
| CAAGAACCCTTTCTGCTTGA+AGG | + | chr3_1:68291295-68291314 | Msa0370490:CDS | 45.0% | |
| TTTCATAACCAGCACGGCAA+GGG | - | chr3_1:68291337-68291356 | None:intergenic | 45.0% | |
| TCTGCTATCACTCACATTGC+TGG | + | chr3_1:68291359-68291378 | Msa0370490:CDS | 45.0% | |
| CTTGCATTCCAGCATAACCT+CGG | - | chr3_1:68292158-68292177 | None:intergenic | 45.0% | |
| GAAGTTGTGTTCTCAAAGCC+AGG | + | chr3_1:68292193-68292212 | Msa0370490:CDS | 45.0% | |
| TAGAGGCAATGCCGTTGTAA+CGG | - | chr3_1:68292363-68292382 | None:intergenic | 45.0% | |
| CTTGTGTGTTCTTCCAGCGA+TGG | + | chr3_1:68291253-68291272 | Msa0370490:CDS | 50.0% | |
| AGCAGAAAGGGTTCTTGGCT+GGG | - | chr3_1:68291292-68291311 | None:intergenic | 50.0% | |
| AAGCAGAAAGGGTTCTTGGC+TGG | - | chr3_1:68291293-68291312 | None:intergenic | 50.0% | |
| CACGACCCTTCAAGCAGAAA+GGG | - | chr3_1:68291304-68291323 | None:intergenic | 50.0% | |
| ACACGACCCTTCAAGCAGAA+AGG | - | chr3_1:68291305-68291324 | None:intergenic | 50.0% | |
| GTTTCATAACCAGCACGGCA+AGG | - | chr3_1:68291338-68291357 | None:intergenic | 50.0% | |
| ! | ATGAATCTGCTTAGGTGCCG+AGG | + | chr3_1:68292138-68292157 | Msa0370490:intron | 50.0% |
| TTTCGCTGCAACTACGCTCA+GGG | - | chr3_1:68292303-68292322 | None:intergenic | 50.0% | |
| GGGTGAGAATAACACGTGCT+TGG | - | chr3_1:68292342-68292361 | None:intergenic | 50.0% | |
| AGAGGCAATGCCGTTGTAAC+GGG | - | chr3_1:68292362-68292381 | None:intergenic | 50.0% | |
| ACGGCATTGCCTCTAATGAC+AGG | + | chr3_1:68292368-68292387 | Msa0370490:CDS | 50.0% | |
| CTTGTGTGTTCTTCCAGCGA+TGG | + | chr3_1:68291253-68291272 | Msa0370490:CDS | 50.0% | |
| AGCAGAAAGGGTTCTTGGCT+GGG | - | chr3_1:68291292-68291311 | None:intergenic | 50.0% | |
| AAGCAGAAAGGGTTCTTGGC+TGG | - | chr3_1:68291293-68291312 | None:intergenic | 50.0% | |
| CACGACCCTTCAAGCAGAAA+GGG | - | chr3_1:68291304-68291323 | None:intergenic | 50.0% | |
| ACACGACCCTTCAAGCAGAA+AGG | - | chr3_1:68291305-68291324 | None:intergenic | 50.0% | |
| GTTTCATAACCAGCACGGCA+AGG | - | chr3_1:68291338-68291357 | None:intergenic | 50.0% | |
| ! | ATGAATCTGCTTAGGTGCCG+AGG | + | chr3_1:68292138-68292157 | Msa0370490:intron | 50.0% |
| TTTCGCTGCAACTACGCTCA+GGG | - | chr3_1:68292303-68292322 | None:intergenic | 50.0% | |
| GGGTGAGAATAACACGTGCT+TGG | - | chr3_1:68292342-68292361 | None:intergenic | 50.0% | |
| AGAGGCAATGCCGTTGTAAC+GGG | - | chr3_1:68292362-68292381 | None:intergenic | 50.0% | |
| ACGGCATTGCCTCTAATGAC+AGG | + | chr3_1:68292368-68292387 | Msa0370490:CDS | 50.0% | |
| CGAATGGCCATAACCATCGC+TGG | - | chr3_1:68291269-68291288 | None:intergenic | 55.0% | |
| !! | CTTAGGTGCCGAGGTTATGC+TGG | + | chr3_1:68292147-68292166 | Msa0370490:intron | 55.0% |
| CCAGTTGCATCAGTCTTCCC+TGG | - | chr3_1:68292214-68292233 | None:intergenic | 55.0% | |
| CCAGGGAAGACTGATGCAAC+TGG | + | chr3_1:68292211-68292230 | Msa0370490:CDS | 55.0% | |
| CTTTCGCTGCAACTACGCTC+AGG | - | chr3_1:68292304-68292323 | None:intergenic | 55.0% | |
| !! | AGTTGCAGCGAAAGAGCACC+TGG | + | chr3_1:68292310-68292329 | Msa0370490:CDS | 55.0% |
| !! | GTTGCAGCGAAAGAGCACCT+GGG | + | chr3_1:68292311-68292330 | Msa0370490:CDS | 55.0% |
| ATGGCAGAGGAGGTTGCTTC+TGG | + | chr3_1:68292412-68292431 | Msa0370490:CDS | 55.0% | |
| CGAATGGCCATAACCATCGC+TGG | - | chr3_1:68291269-68291288 | None:intergenic | 55.0% | |
| !! | CTTAGGTGCCGAGGTTATGC+TGG | + | chr3_1:68292147-68292166 | Msa0370490:intron | 55.0% |
| CCAGTTGCATCAGTCTTCCC+TGG | - | chr3_1:68292214-68292233 | None:intergenic | 55.0% | |
| CCAGGGAAGACTGATGCAAC+TGG | + | chr3_1:68292211-68292230 | Msa0370490:CDS | 55.0% | |
| CTTTCGCTGCAACTACGCTC+AGG | - | chr3_1:68292304-68292323 | None:intergenic | 55.0% | |
| !! | AGTTGCAGCGAAAGAGCACC+TGG | + | chr3_1:68292310-68292329 | Msa0370490:CDS | 55.0% |
| !! | GTTGCAGCGAAAGAGCACCT+GGG | + | chr3_1:68292311-68292330 | Msa0370490:CDS | 55.0% |
| ATGGCAGAGGAGGTTGCTTC+TGG | + | chr3_1:68292412-68292431 | Msa0370490:CDS | 55.0% | |
| AGGGTTCTTGGCTGGGCGAA+TGG | - | chr3_1:68291285-68291304 | None:intergenic | 60.0% | |
| GTATGTGACCCTTGCCGTGC+TGG | + | chr3_1:68291326-68291345 | Msa0370490:CDS | 60.0% | |
| ! | GGTTGCTTCTGGCTGTGCTG+AGG | + | chr3_1:68292423-68292442 | Msa0370490:CDS | 60.0% |
| AGGGTTCTTGGCTGGGCGAA+TGG | - | chr3_1:68291285-68291304 | None:intergenic | 60.0% | |
| GTATGTGACCCTTGCCGTGC+TGG | + | chr3_1:68291326-68291345 | Msa0370490:CDS | 60.0% | |
| ! | GGTTGCTTCTGGCTGTGCTG+AGG | + | chr3_1:68292423-68292442 | Msa0370490:CDS | 60.0% |
| ACACGTGCTTGGTCACGCCC+AGG | - | chr3_1:68292331-68292350 | None:intergenic | 65.0% | |
| ACACGTGCTTGGTCACGCCC+AGG | - | chr3_1:68292331-68292350 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 68291224 | 68292483 | 68291224 | ID=Msa0370490;Name=Msa0370490 |
| chr3_1 | mRNA | 68291224 | 68292483 | 68291224 | ID=Msa0370490-mRNA-1;Parent=Msa0370490;Name=Msa0370490-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0|0|0|1|1|1|2|0|162 |
| chr3_1 | exon | 68291224 | 68291380 | 68291224 | ID=Msa0370490-mRNA-1:exon:14309;Parent=Msa0370490-mRNA-1 |
| chr3_1 | exon | 68292152 | 68292483 | 68292152 | ID=Msa0370490-mRNA-1:exon:14310;Parent=Msa0370490-mRNA-1 |
| chr3_1 | CDS | 68291224 | 68291380 | 68291224 | ID=Msa0370490-mRNA-1:cds;Parent=Msa0370490-mRNA-1 |
| chr3_1 | CDS | 68292152 | 68292483 | 68292152 | ID=Msa0370490-mRNA-1:cds;Parent=Msa0370490-mRNA-1 |
| Gene Sequence |
| Protein sequence |
