AlfalfaGEDB | Msa0370490

M. sativa cultivar zhongmu-4 / Msa0370490

KEGG: -
GO: -
PFAM: PF01190.20

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0370490	XP_013460852.1	93.210	162	11	0	1	162	1	162	1.35e-108	316

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0370490	sp\|P33050\|PSC13_MAIZE	39.865	148	89	0	8	155	15	162	5.74e-29	107

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0370490	B7FN25	93.210	162	11	0	1	162	1	162	6.45e-109	316

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0209140	Msa0370490	0.801296	9.628004e-49	-8.615850e-47
Msa0370490	Msa0417970	0.965041	4.295429e-124	-8.615850e-47
Msa0370490	Msa0479420	0.834938	2.243587e-56	-8.615850e-47
Msa0370490	Msa1035060	0.805875	1.080779e-49	-8.615850e-47
Msa0370490	Msa1083700	0.829388	5.294555e-55	-8.615850e-47
Msa0370490	Msa1381260	0.802484	5.487908e-49	-8.615850e-47
Msa0370490	Msa1389900	0.800018	1.754835e-48	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0370490	MtrunA17_Chr3g0115561	93.210	162	11	0	1	162	1	162	1.24e-112	316
Msa0370490	MtrunA17_Chr3g0124301	41.406	128	73	2	28	153	25	152	3.22e-31	110
Msa0370490	MtrunA17_Chr2g0283801	34.177	158	100	2	1	155	1	157	2.71e-25	95.1
Msa0370490	MtrunA17_Chr2g0316111	33.594	128	82	2	28	155	43	167	1.08e-18	78.2
Msa0370490	MtrunA17_Chr2g0316151	33.594	128	82	2	28	155	43	167	1.19e-18	78.2
Msa0370490	MtrunA17_Chr2g0316161	28.481	158	103	3	5	155	7	161	2.26e-15	69.7
Msa0370490	MtrunA17_Chr2g0316121	28.485	165	106	4	5	160	7	168	2.33e-15	69.3
Msa0370490	MtrunA17_Chr2g0316051	28.906	128	88	3	28	155	36	160	5.71e-12	60.5

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0370490	AT4G08685.1	49.367	158	80	0	3	160	2	159	3.67e-55	171
Msa0370490	AT1G78040.1	38.788	165	96	3	3	162	2	166	5.03e-34	118
Msa0370490	AT1G78040.3	38.788	165	96	3	3	162	2	166	5.03e-34	118
Msa0370490	AT1G78040.2	38.788	165	96	3	3	162	2	166	5.03e-34	118
Msa0370490	AT5G10130.1	40.000	150	87	1	5	154	8	154	7.02e-30	107
Msa0370490	AT4G18596.1	32.317	164	102	3	1	155	1	164	1.63e-23	91.3
Msa0370490	AT4G18596.2	32.317	164	102	3	1	155	47	210	3.81e-23	91.3
Msa0370490	AT5G45880.1	31.325	166	103	3	1	155	1	166	3.47e-22	87.8
Msa0370490	AT1G29140.1	35.075	134	83	2	26	155	30	163	1.92e-20	83.2

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Find 45 sgRNAs with CRISPR-Local

Find 162 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAGAACCCTTTCTGCTTGAA+GGG	0.515228	3_1:+68291296	Msa0370490:CDS
AAGCAGAAAGGGTTCTTGGC+TGG	0.404947	3_1:-68291290	None:intergenic
AAGTTGTGTTCTCAAAGCCA+GGG	0.636901	3_1:+68292194	Msa0370490:CDS
AATGTTATACATGGCAGAGG+AGG	0.630027	3_1:+68292402	Msa0370490:CDS
ACACGACCCTTCAAGCAGAA+AGG	0.545423	3_1:-68291302	None:intergenic
ACACGTGCTTGGTCACGCCC+AGG	0.584341	3_1:-68292328	None:intergenic
ACGGCATTGCCTCTAATGAC+AGG	0.562012	3_1:+68292368	Msa0370490:CDS
AGAGGCAATGCCGTTGTAAC+GGG	0.421384	3_1:-68292359	None:intergenic
AGCAGAAAGGGTTCTTGGCT+GGG	0.458995	3_1:-68291289	None:intergenic
AGGGTTCTTGGCTGGGCGAA+TGG	0.488766	3_1:-68291282	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAGAGATCTGAGAGTAAAAA+GGG	-	chr3_1:68291389-68291408	None:intergenic	30.0%
AAAGAGATCTGAGAGTAAAA+AGG	-	chr3_1:68291390-68291409	None:intergenic	30.0%
ATGTTAAATGAATGACCTTG+CGG	+	chr3_1:68291729-68291748	Msa0370490:intron	30.0%
TTGCTTCTAATGTAAAGATC+TGG	+	chr3_1:68291884-68291903	Msa0370490:intron	30.0%
TGTTTGATTCATGTAACCAT+TGG	+	chr3_1:68291957-68291976	Msa0370490:intron	30.0%
TGTGTTAACAAACTACCATA+AGG	-	chr3_1:68292102-68292121	None:intergenic	30.0%
TGGAGAATATACAATCTATG+TGG	+	chr3_1:68292231-68292250	Msa0370490:CDS	30.0%
ATATACAATCTATGTGGATC+AGG	+	chr3_1:68292237-68292256	Msa0370490:CDS	30.0%
AAGAGATCTGAGAGTAAAAA+GGG	-	chr3_1:68291389-68291408	None:intergenic	30.0%
AAAGAGATCTGAGAGTAAAA+AGG	-	chr3_1:68291390-68291409	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_1	gene	68291224	68292483	68291224	ID=Msa0370490;Name=Msa0370490
chr3_1	mRNA	68291224	68292483	68291224	ID=Msa0370490-mRNA-1;Parent=Msa0370490;Name=Msa0370490-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0\|0\|0\|1\|1\|1\|2\|0\|162
chr3_1	exon	68291224	68291380	68291224	ID=Msa0370490-mRNA-1:exon:14309;Parent=Msa0370490-mRNA-1
chr3_1	exon	68292152	68292483	68292152	ID=Msa0370490-mRNA-1:exon:14310;Parent=Msa0370490-mRNA-1
chr3_1	CDS	68291224	68291380	68291224	ID=Msa0370490-mRNA-1:cds;Parent=Msa0370490-mRNA-1
chr3_1	CDS	68292152	68292483	68292152	ID=Msa0370490-mRNA-1:cds;Parent=Msa0370490-mRNA-1

Gene Sequence

>Msa0370490

ATGGCTTCAAGAGTTGTTTTTTTGTTGTTCTTGTGTGTTCTTCCAGCGATGGTTATGGCCATTCGCCCAGCCAAGAACCCTTTCTGCTTGAAGGGTCGTGTTGTATGTGACCCTTGCCGTGCTGGTTATGAAACTTCTGCTATCACTCACATTGCTGGTGCCGAGGTTATGCTGGAATGCAAGCAAAGGAACAGCAACGAAGTTGTGTTCTCAAAGCCAGGGAAGACTGATGCAACTGGAGAATATACAATCTATGTGGATCAGGATCGCGCAGATGAAGTGTGTGATGTGAAGCTAATAAACAGCCCTGAGCGTAGTTGCAGCGAAAGAGCACCTGGGCGTGACCAAGCACGTGTTATTCTCACCCGTTACAACGGCATTGCCTCTAATGACAGGTTTGCCAATGCAATGTTATACATGGCAGAGGAGGTTGCTTCTGGCTGTGCTGAGGTCCTCAAGCAAATGCAAGAATTGGATGAAGAGAATTAA

Protein sequence

>Msa0370490

MASRVVFLLFLCVLPAMVMAIRPAKNPFCLKGRVVCDPCRAGYETSAITHIAGAEVMLECKQRNSNEVVFSKPGKTDATGEYTIYVDQDRADEVCDVKLINSPERSCSERAPGRDQARVILTRYNGIASNDRFANAMLYMAEEVASGCAEVLKQMQELDEEN*