Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1381260 | XP_003626299.1 | 99.291 | 282 | 2 | 0 | 1 | 282 | 1 | 282 | 0.0 | 570 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1381260 | sp|Q54TS4|YIPF1_DICDI | 33.761 | 234 | 148 | 3 | 49 | 281 | 96 | 323 | 3.82e-39 | 142 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1381260 | G7KYP9 | 99.291 | 282 | 2 | 0 | 1 | 282 | 1 | 282 | 0.0 | 570 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0017730 | Msa1381260 | 0.844612 | 6.787430e-59 | -8.615850e-47 |
| Msa0071410 | Msa1381260 | 0.805212 | 1.488370e-49 | -8.615850e-47 |
| Msa0098240 | Msa1381260 | 0.836519 | 8.925274e-57 | -8.615850e-47 |
| Msa1381260 | Msa1391500 | 0.802115 | 6.539792e-49 | -8.615850e-47 |
| Msa1381260 | Msa1398810 | 0.810694 | 1.014986e-50 | -8.615850e-47 |
| Msa1381260 | Msa1433870 | 0.808682 | 2.746445e-50 | -8.615850e-47 |
| Msa1381260 | Msa1457770 | 0.806774 | 6.986051e-50 | -8.615850e-47 |
| Msa1381260 | Msa1457890 | 0.809001 | 2.347817e-50 | -8.615850e-47 |
| Msa0610690 | Msa1381260 | 0.807471 | 4.974765e-50 | -8.615850e-47 |
| Msa0675120 | Msa1381260 | 0.842884 | 1.968789e-58 | -8.615850e-47 |
| Msa0693330 | Msa1381260 | 0.801676 | 8.046561e-49 | -8.615850e-47 |
| Msa0124910 | Msa1381260 | 0.804227 | 2.390273e-49 | -8.615850e-47 |
| Msa0169410 | Msa1381260 | 0.811810 | 5.811354e-51 | -8.615850e-47 |
| Msa0209140 | Msa1381260 | 0.809744 | 1.626454e-50 | -8.615850e-47 |
| Msa0225480 | Msa1381260 | 0.800636 | 1.313609e-48 | -8.615850e-47 |
| Msa1259160 | Msa1381260 | 0.803447 | 3.471618e-49 | -8.615850e-47 |
| Msa1260220 | Msa1381260 | 0.802434 | 5.620677e-49 | -8.615850e-47 |
| Msa1299650 | Msa1381260 | 0.806914 | 6.526378e-50 | -8.615850e-47 |
| Msa0370490 | Msa1381260 | 0.802484 | 5.487908e-49 | -8.615850e-47 |
| Msa0417970 | Msa1381260 | 0.804636 | 1.964645e-49 | -8.615850e-47 |
| Msa1039100 | Msa1381260 | 0.858105 | 1.035380e-62 | -8.615850e-47 |
| Msa1078830 | Msa1381260 | 0.805677 | 1.189251e-49 | -8.615850e-47 |
| Msa1078890 | Msa1381260 | 0.801721 | 7.877175e-49 | -8.615850e-47 |
| Msa1083700 | Msa1381260 | 0.981625 | 4.792799e-153 | -8.615850e-47 |
| Msa0262440 | Msa1381260 | 0.810280 | 1.246597e-50 | -8.615850e-47 |
| Msa0326710 | Msa1381260 | 0.807125 | 5.888807e-50 | -8.615850e-47 |
| Msa1169660 | Msa1381260 | 0.816361 | 5.753515e-52 | -8.615850e-47 |
| Msa1210040 | Msa1381260 | 0.807826 | 4.181518e-50 | -8.615850e-47 |
| Msa1213040 | Msa1381260 | 0.802196 | 6.292194e-49 | -8.615850e-47 |
| Msa0579080 | Msa1381260 | 0.824308 | 8.658924e-54 | -8.615850e-47 |
| Msa0579160 | Msa1381260 | 0.809330 | 1.996306e-50 | -8.615850e-47 |
| Msa0579220 | Msa1381260 | 0.808909 | 2.456635e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1381260 | MtrunA17_Chr7g0272931 | 99.291 | 282 | 2 | 0 | 1 | 282 | 1 | 282 | 0.0 | 570 |
| Msa1381260 | MtrunA17_Chr5g0436001 | 37.722 | 281 | 162 | 6 | 2 | 278 | 1 | 272 | 2.47e-58 | 187 |
| Msa1381260 | MtrunA17_Chr3g0112431 | 36.655 | 281 | 165 | 5 | 2 | 278 | 1 | 272 | 3.85e-52 | 171 |
| Msa1381260 | MtrunA17_Chr3g0112461 | 36.585 | 246 | 146 | 4 | 2 | 243 | 1 | 240 | 7.62e-46 | 154 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1381260 | AT5G27490.1 | 79.433 | 282 | 58 | 0 | 1 | 282 | 1 | 282 | 1.41e-173 | 481 |
| Msa1381260 | AT3G05280.1 | 77.936 | 281 | 62 | 0 | 2 | 282 | 1 | 281 | 6.55e-159 | 443 |
| Msa1381260 | AT2G39805.1 | 37.589 | 282 | 155 | 7 | 7 | 278 | 4 | 274 | 5.03e-57 | 184 |
| Msa1381260 | AT2G39805.2 | 37.589 | 282 | 156 | 7 | 7 | 278 | 4 | 275 | 1.50e-55 | 181 |
Find 98 sgRNAs with CRISPR-Local
Find 250 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGAATTAATGAATTTCTAAA+AGG | 0.247110 | tig0020424:+61682 | None:intergenic |
| GTTCAACTATTCTGCCTATA+TGG | 0.275933 | tig0020424:-62088 | Msa1381260:CDS |
| AATATTTGTAGCAGCATCTA+TGG | 0.291783 | tig0020424:-62272 | Msa1381260:CDS |
| TCAGTTAACCTCTTGATGTT+GGG | 0.301686 | tig0020424:-61465 | Msa1381260:three_prime_UTR |
| TTTGTGTAATCATTCGTTTA+TGG | 0.311941 | tig0020424:-61627 | Msa1381260:three_prime_UTR |
| TACTCAGGTATGGACCATTC+TGG | 0.345340 | tig0020424:-62309 | Msa1381260:intron |
| TTTGTTTCATAATGCAATTA+TGG | 0.353945 | tig0020424:-61578 | Msa1381260:three_prime_UTR |
| GAAAAGTCTACTTACAAATC+AGG | 0.358789 | tig0020424:+63718 | None:intergenic |
| GGAAGATTACCGGTGGTTCT+AGG | 0.365279 | tig0020424:-64814 | Msa1381260:CDS |
| TGGGTGATTGCAGGTGTGGC+AGG | 0.371118 | tig0020424:-61912 | Msa1381260:CDS |
| AGGTGGTTCTTCATTGTTGC+TGG | 0.371924 | tig0020424:-61828 | Msa1381260:CDS |
| CATTTGTGGCACTTAACCTT+CGG | 0.374032 | tig0020424:-61875 | Msa1381260:CDS |
| CAATCCAGTTTCCTCTTAAA+CGG | 0.381688 | tig0020424:+61746 | None:intergenic |
| CAAGCTCAGGGGAAGATTAC+CGG | 0.388535 | tig0020424:-64824 | Msa1381260:CDS |
| GAGCTGGAATAAAGACAAAC+AGG | 0.390832 | tig0020424:+62059 | None:intergenic |
| TTCTTCTGATGAACCTCAGC+AGG | 0.399077 | tig0020424:-63875 | Msa1381260:CDS |
| GTTTGTCTTTATTCCAGCTC+TGG | 0.400569 | tig0020424:-62056 | Msa1381260:intron |
| CTCAGCAGGGTGGTTGGCTT+CGG | 0.402877 | tig0020424:-63861 | Msa1381260:CDS |
| TCATTAAAAGTTCCTCTGAA+TGG | 0.411432 | tig0020424:+63757 | None:intergenic |
| ACAAGCTGAAGGATCAGAAA+TGG | 0.419782 | tig0020424:-62225 | Msa1381260:CDS |
| ACGGTGACCGGTGGTGGATC+TGG | 0.425336 | tig0020424:+65025 | None:intergenic |
| TTCAGTTAACCTCTTGATGT+TGG | 0.430518 | tig0020424:-61466 | Msa1381260:three_prime_UTR |
| ATTGATAGTCAACAGCTTCA+AGG | 0.431513 | tig0020424:-65157 | Msa1381260:CDS |
| CTTCACGGTATCCGTTTAAG+AGG | 0.439293 | tig0020424:-61757 | Msa1381260:exon |
| CAGTTAACCTCTTGATGTTG+GGG | 0.440160 | tig0020424:-61464 | Msa1381260:three_prime_UTR |
| ATATTCAGATGGGTGATTGC+AGG | 0.441456 | tig0020424:-61921 | Msa1381260:CDS |
| ATTTCCTCCATCGCAAGCTC+AGG | 0.446741 | tig0020424:-64837 | Msa1381260:CDS |
| GAAGTATCGACATCAAAGTA+TGG | 0.450124 | tig0020424:+63814 | None:intergenic |
| GTATCCGTTTAAGAGGAAAC+TGG | 0.456417 | tig0020424:-61750 | Msa1381260:exon |
| ATTTGTGGCACTTAACCTTC+GGG | 0.459603 | tig0020424:-61874 | Msa1381260:CDS |
| AATCTGGTGACTTGGTCTGC+TGG | 0.463897 | tig0020424:-62190 | Msa1381260:CDS |
| GAGAAGCAACTTACCAGAGC+TGG | 0.464299 | tig0020424:+62043 | None:intergenic |
| CAAACAGGGAATATCCATAT+AGG | 0.469322 | tig0020424:+62074 | None:intergenic |
| TCTGTTGCAGTTGGCTTTAG+CGG | 0.472890 | tig0020424:-61799 | Msa1381260:CDS |
| TCACATTAACAAGGCAACTT+AGG | 0.477799 | tig0020424:-61505 | Msa1381260:three_prime_UTR |
| ATTAAAGATCTACCTCTTCA+CGG | 0.481807 | tig0020424:-61772 | Msa1381260:CDS |
| ATGGGACTATGACATAAATC+TGG | 0.483862 | tig0020424:-62206 | Msa1381260:CDS |
| GTGTTTGTCCATTGTCCCAT+TGG | 0.488665 | tig0020424:-61946 | Msa1381260:CDS |
| ATGAACCTCAGCAGGGTGGT+TGG | 0.497811 | tig0020424:-63867 | Msa1381260:CDS |
| GGAAAGATGATGCAAGGAGG+AGG | 0.498848 | tig0020424:-65193 | Msa1381260:exon |
| ATGAAATATATATACGATGA+AGG | 0.500353 | tig0020424:-61718 | Msa1381260:three_prime_UTR |
| AACTTGACGGTGACCGGTGG+TGG | 0.508137 | tig0020424:+65019 | None:intergenic |
| GTTCATGTCAGCAACATTTG+TGG | 0.509994 | tig0020424:-61889 | Msa1381260:CDS |
| CAAGCTGAAGGATCAGAAAT+GGG | 0.517844 | tig0020424:-62224 | Msa1381260:CDS |
| CCCATCTGAATATATCCAAT+GGG | 0.523908 | tig0020424:+61931 | None:intergenic |
| TTCCCCTGAGCTTGCGATGG+AGG | 0.524017 | tig0020424:+64833 | None:intergenic |
| ATCTTCCCCTGAGCTTGCGA+TGG | 0.526679 | tig0020424:+64830 | None:intergenic |
| CCAGTGAACTTGACGGTGAC+CGG | 0.528555 | tig0020424:+65013 | None:intergenic |
| CGGGCACATATCATGTCGGC+AGG | 0.530948 | tig0020424:-61855 | Msa1381260:CDS |
| CCCATTGGATATATTCAGAT+GGG | 0.538766 | tig0020424:-61931 | Msa1381260:CDS |
| CCGGTCACCGTCAAGTTCAC+TGG | 0.541760 | tig0020424:-65013 | Msa1381260:intron |
| TCCCATTGGATATATTCAGA+TGG | 0.544799 | tig0020424:-61932 | Msa1381260:CDS |
| TCATCAGAAGAACCAGATGC+AGG | 0.552062 | tig0020424:+63886 | None:intergenic |
| GTTCGTACCAGTGAACTTGA+CGG | 0.552167 | tig0020424:+65006 | None:intergenic |
| GGGTGATTGCAGGTGTGGCA+GGG | 0.554516 | tig0020424:-61911 | Msa1381260:CDS |
| TGCATTATGAAACAAATCAC+AGG | 0.556690 | tig0020424:+61585 | None:intergenic |
| GAAGAAGGAAAGATGATGCA+AGG | 0.556931 | tig0020424:-65199 | Msa1381260:exon |
| ATGACATAAATCTGGTGACT+TGG | 0.561043 | tig0020424:-62198 | Msa1381260:CDS |
| GTATAGACAAAGAGGAATGA+TGG | 0.561761 | tig0020424:+62147 | None:intergenic |
| ACCCATCTGAATATATCCAA+TGG | 0.568674 | tig0020424:+61930 | None:intergenic |
| ATATCATGTCGGCAGGTGAA+AGG | 0.568955 | tig0020424:-61848 | Msa1381260:CDS |
| ATACTTTGATGTCGATACTT+CGG | 0.569777 | tig0020424:-63812 | Msa1381260:CDS |
| AAAAGTCTACTTACAAATCA+GGG | 0.570946 | tig0020424:+63719 | None:intergenic |
| GAATATATCCAATGGGACAA+TGG | 0.572781 | tig0020424:+61938 | None:intergenic |
| TGTGGATCTGAAGAAGAAGA+AGG | 0.574954 | tig0020424:-65214 | Msa1381260:five_prime_UTR |
| GACCGGTGGTGGATCTGGAA+CGG | 0.576104 | tig0020424:+65030 | None:intergenic |
| CCGGTACAGAGAAGTATTTG+AGG | 0.576562 | tig0020424:+62119 | None:intergenic |
| CCTCAAATACTTCTCTGTAC+CGG | 0.581136 | tig0020424:-62119 | Msa1381260:CDS |
| AGTTAACCTCTTGATGTTGG+GGG | 0.583244 | tig0020424:-61463 | None:intergenic |
| TTTCCTCCATCGCAAGCTCA+GGG | 0.583701 | tig0020424:-64836 | Msa1381260:CDS |
| TCGAGGTGGCCTAGAACCAC+CGG | 0.584989 | tig0020424:+64805 | None:intergenic |
| ATATTTGTAGCAGCATCTAT+GGG | 0.585347 | tig0020424:-62271 | Msa1381260:CDS |
| CAAATACTTCTCTGTACCGG+CGG | 0.587474 | tig0020424:-62116 | Msa1381260:CDS |
| GTCTACTTACAAATCAGGGT+TGG | 0.588422 | tig0020424:+63723 | None:intergenic |
| GGCCGTTCCAGATCCACCAC+CGG | 0.597655 | tig0020424:-65032 | Msa1381260:CDS |
| CAGATGGGTGATTGCAGGTG+TGG | 0.599018 | tig0020424:-61916 | Msa1381260:CDS |
| AGGATTACGTATAGACAAAG+AGG | 0.600243 | tig0020424:+62139 | None:intergenic |
| AGAGTGGTGCAAATCCAGAA+TGG | 0.616599 | tig0020424:+62295 | None:intergenic |
| AACTGTTGTTCACATTAACA+AGG | 0.618893 | tig0020424:-61514 | Msa1381260:three_prime_UTR |
| TCTTCTGATGAACCTCAGCA+GGG | 0.619382 | tig0020424:-63874 | Msa1381260:CDS |
| AAATACTTCTCTGTACCGGC+GGG | 0.619911 | tig0020424:-62115 | Msa1381260:CDS |
| ATATATAGCACACAAGCTGA+AGG | 0.625103 | tig0020424:-62236 | Msa1381260:CDS |
| AGGCCACCTCGAGATGCAGA+TGG | 0.625410 | tig0020424:-64794 | Msa1381260:intron |
| CGAAGCCAACCACCCTGCTG+AGG | 0.631145 | tig0020424:+63862 | None:intergenic |
| TGCTGCTACAAATATTAGAG+TGG | 0.638926 | tig0020424:+62279 | None:intergenic |
| TCTGATGAACCTCAGCAGGG+TGG | 0.640708 | tig0020424:-63871 | Msa1381260:CDS |
| CTTAAACGGATACCGTGAAG+AGG | 0.641911 | tig0020424:+61760 | None:intergenic |
| TCATGTCGGCAGGTGAAAGG+TGG | 0.649545 | tig0020424:-61845 | Msa1381260:CDS |
| ATACTTCGGATGTTCTAGAG+AGG | 0.653109 | tig0020424:-63798 | Msa1381260:CDS |
| AAAATACCATCTGCATCTCG+AGG | 0.655529 | tig0020424:+64788 | None:intergenic |
| GAAGGAAAGATGATGCAAGG+AGG | 0.657050 | tig0020424:-65196 | Msa1381260:exon |
| AATAGTTGAACAAGTCCCGC+CGG | 0.666349 | tig0020424:+62100 | None:intergenic |
| CCTTCGGGCACATATCATGT+CGG | 0.666772 | tig0020424:-61859 | Msa1381260:CDS |
| TTCCTCCATCGCAAGCTCAG+GGG | 0.676586 | tig0020424:-64835 | Msa1381260:CDS |
| ATACCATCTGCATCTCGAGG+TGG | 0.680065 | tig0020424:+64791 | None:intergenic |
| AGCTGGAATAAAGACAAACA+GGG | 0.694942 | tig0020424:+62060 | None:intergenic |
| GCTCAGGGGAAGATTACCGG+TGG | 0.714030 | tig0020424:-64821 | Msa1381260:CDS |
| GTGAACTTGACGGTGACCGG+TGG | 0.721035 | tig0020424:+65016 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AACTATATTTAAAGAATTAT+TGG | + | tig0020424:63117-63136 | None:intergenic | 10.0% |
| !! | ATTAAATATTGTAGCTAAAT+TGG | - | tig0020424:63198-63217 | Msa1381260:intron | 15.0% |
| !! | ATAATAGAATTAGAGTATAA+CGG | + | tig0020424:64157-64176 | None:intergenic | 15.0% |
| !!! | TTTTTTATTATATTTGAGAC+CGG | + | tig0020424:64247-64266 | None:intergenic | 15.0% |
| !!! | CTTTTAGAAATTCATTAATT+CGG | - | tig0020424:65101-65120 | Msa1381260:intron | 15.0% |
| !!! | AATTAACCGATTCAATTAAA+CGG | - | tig0020424:61832-61851 | Msa1381260:CDS | 20.0% |
| !! | TATTATTGTGATTAAAAGAC+TGG | + | tig0020424:62060-62079 | None:intergenic | 20.0% |
| !! | TACAGATCAAATATCAAAAT+TGG | + | tig0020424:62089-62108 | None:intergenic | 20.0% |
| !!! | GATTTTAGTTTTACTGATAT+TGG | - | tig0020424:62509-62528 | Msa1381260:intron | 20.0% |
| !! | TCAATATTCAATTTCAACTA+TGG | - | tig0020424:63147-63166 | Msa1381260:intron | 20.0% |
| !!! | ACTATCATCTACATTATTTT+AGG | + | tig0020424:63245-63264 | None:intergenic | 20.0% |
| !! | ATTGAAGAACTATAATACAT+TGG | - | tig0020424:63268-63287 | Msa1381260:intron | 20.0% |
| !!! | TATTATGTTTTCCCTTTATT+TGG | - | tig0020424:63316-63335 | Msa1381260:intron | 20.0% |
| !! | CTATATGAACTAACATAATT+TGG | - | tig0020424:63837-63856 | Msa1381260:CDS | 20.0% |
| !! | ATATCAGAAATAAGTATTAG+TGG | + | tig0020424:64023-64042 | None:intergenic | 20.0% |
| !!! | CTAATACTTATTTCTGATAT+AGG | - | tig0020424:64023-64042 | Msa1381260:intron | 20.0% |
| !! | TATACTCTAATTCTATTATC+TGG | - | tig0020424:64158-64177 | Msa1381260:intron | 20.0% |
| !!! | TTTAGTCTCTTTTTTATTTG+TGG | - | tig0020424:64189-64208 | Msa1381260:intron | 20.0% |
| !!! | TATTTTATATAGTACTACTC+CGG | + | tig0020424:64363-64382 | None:intergenic | 20.0% |
| !! | AGTAGTACTATATAAAATAC+TGG | - | tig0020424:64364-64383 | Msa1381260:intron | 20.0% |
| !! | ATGAAATATATATACGATGA+AGG | - | tig0020424:65064-65083 | Msa1381260:intron | 20.0% |
| !! | CGAATTAATGAATTTCTAAA+AGG | + | tig0020424:65103-65122 | None:intergenic | 20.0% |
| !! | TTTGTTTCATAATGCAATTA+TGG | - | tig0020424:65204-65223 | Msa1381260:exon | 20.0% |
| ! | AAAGAAGAGAAAAGTTATAC+AGG | + | tig0020424:61658-61677 | None:intergenic | 25.0% |
| ! | CAGAAAGAAAAAGAAAAGAA+AGG | + | tig0020424:61686-61705 | None:intergenic | 25.0% |
| ! | GAAATCAGAATGATAGAATT+TGG | + | tig0020424:61710-61729 | None:intergenic | 25.0% |
| ! | GATTGAGGTAATTAATTTCA+TGG | + | tig0020424:62160-62179 | None:intergenic | 25.0% |
| !! | AGCTATAAACCATTTTCATA+AGG | - | tig0020424:62319-62338 | Msa1381260:intron | 25.0% |
| ! | TCATATTTACTTGATATGCA+CGG | - | tig0020424:62637-62656 | Msa1381260:intron | 25.0% |
| !! | AAAATTTCTAGAAGCACAAA+AGG | + | tig0020424:62777-62796 | None:intergenic | 25.0% |
| !!! | TTGTGCTTCTAGAAATTTTA+TGG | - | tig0020424:62778-62797 | Msa1381260:intron | 25.0% |
| ! | AAAAGTCTACTTACAAATCA+GGG | + | tig0020424:63066-63085 | None:intergenic | 25.0% |
| ! | ATTCAATTTCAACTATGGTT+TGG | - | tig0020424:63152-63171 | Msa1381260:intron | 25.0% |
| !!! | TATAATACATTGGTGGTTTT+GGG | - | tig0020424:63278-63297 | Msa1381260:intron | 25.0% |
| ! | GCGAATATATAATAACCTAT+TGG | + | tig0020424:63452-63471 | None:intergenic | 25.0% |
| ! | TAGAAAACATAAGAACTAAC+AGG | + | tig0020424:63489-63508 | None:intergenic | 25.0% |
| !! | TCTTTTGATCATCATTGTAT+TGG | - | tig0020424:63677-63696 | Msa1381260:intron | 25.0% |
| !! | TCTTTTGATCATCATTGTAT+TGG | - | tig0020424:63677-63696 | Msa1381260:intron | 25.0% |
| ! | AACATAATTTGGAGATTACA+AGG | - | tig0020424:63848-63867 | Msa1381260:CDS | 25.0% |
| !! | AAAAGCAACTTTTCCTTTTA+GGG | - | tig0020424:63892-63911 | Msa1381260:CDS | 25.0% |
| !! | ACTATAGAAGTATAGTCTAT+GGG | + | tig0020424:63994-64013 | None:intergenic | 25.0% |
| ! | AGAAAAGACTACAATTGTTA+AGG | + | tig0020424:64093-64112 | None:intergenic | 25.0% |
| !! | TCAAACAAAGTTGAAGTATT+TGG | + | tig0020424:64311-64330 | None:intergenic | 25.0% |
| !!! | TTTTTGCTTATATTTGAGAC+CGG | - | tig0020424:64341-64360 | Msa1381260:intron | 25.0% |
| ! | TTTGTGTAATCATTCGTTTA+TGG | - | tig0020424:65155-65174 | Msa1381260:CDS | 25.0% |
| AAGAAAAAGAGATAGATCTG+TGG | - | tig0020424:61550-61569 | Msa1381260:three_prime_UTR | 30.0% | |
| TAACAGAATGAGAATGCAAT+TGG | + | tig0020424:61813-61832 | None:intergenic | 30.0% | |
| AGTGATCCGTTTAATTGAAT+CGG | + | tig0020424:61841-61860 | None:intergenic | 30.0% | |
| !! | ACCATTTTCATAAGGTATCT+TGG | - | tig0020424:62327-62346 | Msa1381260:intron | 30.0% |
| TCCAAGATACCTTATGAAAA+TGG | + | tig0020424:62331-62350 | None:intergenic | 30.0% | |
| GAAATAAGCTAAAAAACTCG+TGG | - | tig0020424:62361-62380 | Msa1381260:intron | 30.0% | |
| TCAAATAAGCCAATTCAAAC+AGG | - | tig0020424:62452-62471 | Msa1381260:intron | 30.0% | |
| TACTATAGACCTGTTTGAAT+TGG | + | tig0020424:62464-62483 | None:intergenic | 30.0% | |
| CATATTTACTTGATATGCAC+GGG | - | tig0020424:62638-62657 | Msa1381260:intron | 30.0% | |
| ATACTTTGATGTCGATACTT+CGG | - | tig0020424:62970-62989 | Msa1381260:intron | 30.0% | |
| TCATTAAAAGTTCCTCTGAA+TGG | + | tig0020424:63028-63047 | None:intergenic | 30.0% | |
| GAAAAGTCTACTTACAAATC+AGG | + | tig0020424:63067-63086 | None:intergenic | 30.0% | |
| GAAGAACTATAATACATTGG+TGG | - | tig0020424:63271-63290 | Msa1381260:intron | 30.0% | |
| !! | CTATAATACATTGGTGGTTT+TGG | - | tig0020424:63277-63296 | Msa1381260:intron | 30.0% |
| !! | TATGTTTTCCCTTTATTTGG+CGG | - | tig0020424:63319-63338 | Msa1381260:intron | 30.0% |
| ! | CAATGTGAAGAAGTATATCT+CGG | - | tig0020424:63384-63403 | Msa1381260:intron | 30.0% |
| CAATATCTTGTATTGCCAAT+AGG | - | tig0020424:63434-63453 | Msa1381260:intron | 30.0% | |
| TAAGAACTAACAGGTTTACT+TGG | + | tig0020424:63480-63499 | None:intergenic | 30.0% | |
| ! | CTTTGTTTATGCATATTAGC+CGG | - | tig0020424:63546-63565 | Msa1381260:intron | 30.0% |
| ! | TCATGAACAGGATCTTTTTA+GGG | + | tig0020424:63643-63662 | None:intergenic | 30.0% |
| ! | TTCATGAACAGGATCTTTTT+AGG | + | tig0020424:63644-63663 | None:intergenic | 30.0% |
| ! | TCATGAACAGGATCTTTTTA+GGG | + | tig0020424:63643-63662 | None:intergenic | 30.0% |
| ! | TTCATGAACAGGATCTTTTT+AGG | + | tig0020424:63644-63663 | None:intergenic | 30.0% |
| ! | TATAGGAACTGATTCTAACA+TGG | + | tig0020424:63792-63811 | None:intergenic | 30.0% |
| !! | CTAAAAGGAAAAGTTGCTTT+TGG | + | tig0020424:63893-63912 | None:intergenic | 30.0% |
| ! | CAAAAGCAACTTTTCCTTTT+AGG | - | tig0020424:63891-63910 | Msa1381260:CDS | 30.0% |
| ! | GACTATAGAAGTATAGTCTA+TGG | + | tig0020424:63995-64014 | None:intergenic | 30.0% |
| ! | AATTGTAGTCTTTTCTTGCT+TGG | - | tig0020424:64097-64116 | Msa1381260:intron | 30.0% |
| ACTCTAATTCTATTATCTGG+TGG | - | tig0020424:64161-64180 | Msa1381260:intron | 30.0% | |
| ATTTGTGGAAACATCATATG+TGG | - | tig0020424:64204-64223 | Msa1381260:intron | 30.0% | |
| ! | TTATTATATTTGAGACCGGA+GGG | + | tig0020424:64243-64262 | None:intergenic | 30.0% |
| ! | TTTATTATATTTGAGACCGG+AGG | + | tig0020424:64244-64263 | None:intergenic | 30.0% |
| !!! | AATACTGGTTTTCTAAGAAG+AGG | - | tig0020424:64379-64398 | Msa1381260:intron | 30.0% |
| !!! | TGCCAGTTTTTTAACTTTAG+AGG | - | tig0020424:64406-64425 | Msa1381260:intron | 30.0% |
| !!! | GCCAGTTTTTTAACTTTAGA+GGG | - | tig0020424:64407-64426 | Msa1381260:intron | 30.0% |
| !! | TCCCTCTAAAGTTAAAAAAC+TGG | + | tig0020424:64411-64430 | None:intergenic | 30.0% |
| AATATTTGTAGCAGCATCTA+TGG | - | tig0020424:64510-64529 | Msa1381260:intron | 30.0% | |
| ATATTTGTAGCAGCATCTAT+GGG | - | tig0020424:64511-64530 | Msa1381260:intron | 30.0% | |
| AACAAAAGGTTTCACATTTC+AGG | + | tig0020424:64809-64828 | None:intergenic | 30.0% | |
| ATTAAAGATCTACCTCTTCA+CGG | - | tig0020424:65010-65029 | Msa1381260:intron | 30.0% | |
| ! | ACGATGAAGGAATAACTTTT+TGG | - | tig0020424:65077-65096 | Msa1381260:intron | 30.0% |
| TGCATTATGAAACAAATCAC+AGG | + | tig0020424:65200-65219 | None:intergenic | 30.0% | |
| TGCGTTATGAAAAAAATCAC+AGG | + | tig0020424:65249-65268 | None:intergenic | 30.0% | |
| AACTGTTGTTCACATTAACA+AGG | - | tig0020424:65268-65287 | Msa1381260:five_prime_UTR | 30.0% | |
| ! | ATTGATAGTCAACAGCTTCA+AGG | - | tig0020424:61625-61644 | Msa1381260:three_prime_UTR | 35.0% |
| CACTTAATCTCGTTTCTTTC+AGG | - | tig0020424:61729-61748 | Msa1381260:three_prime_UTR | 35.0% | |
| AACATTCTTACACACGATTG+AGG | + | tig0020424:62175-62194 | None:intergenic | 35.0% | |
| AATCGTGTGTAAGAATGTTC+AGG | - | tig0020424:62176-62195 | Msa1381260:CDS | 35.0% | |
| ATCGTGTGTAAGAATGTTCA+GGG | - | tig0020424:62177-62196 | Msa1381260:CDS | 35.0% | |
| AAGTCCTTGTAAGACTGTTT+GGG | + | tig0020424:62416-62435 | None:intergenic | 35.0% | |
| TAAGTCCTTGTAAGACTGTT+TGG | + | tig0020424:62417-62436 | None:intergenic | 35.0% | |
| TTCAAACAGGTCTATAGTAG+AGG | - | tig0020424:62465-62484 | Msa1381260:intron | 35.0% | |
| ! | AGATTCAGTTGTGTGTTACT+TGG | + | tig0020424:62567-62586 | None:intergenic | 35.0% |
| GGAATTTAGAAAGATGTGAC+TGG | - | tig0020424:62699-62718 | Msa1381260:intron | 35.0% | |
| TCTGCATAAAATGAGTCACA+TGG | + | tig0020424:62863-62882 | None:intergenic | 35.0% | |
| ! | TCATTTTCAAAACCTGCATC+TGG | - | tig0020424:62884-62903 | Msa1381260:intron | 35.0% |
| !! | GAAGTATCGACATCAAAGTA+TGG | + | tig0020424:62971-62990 | None:intergenic | 35.0% |
| !!! | GATTCACTTTTTCCATTCAG+AGG | - | tig0020424:63013-63032 | Msa1381260:intron | 35.0% |
| AAGTGAACTGAGTATAGTCA+GGG | - | tig0020424:63571-63590 | Msa1381260:intron | 35.0% | |
| AAGATCCTGTTCATGAAACA+TGG | - | tig0020424:63647-63666 | Msa1381260:intron | 35.0% | |
| AGATCCTGTTCATGAAACAT+GGG | - | tig0020424:63648-63667 | Msa1381260:intron | 35.0% | |
| AAGATCCTGTTCATGAAACA+TGG | - | tig0020424:63647-63666 | Msa1381260:intron | 35.0% | |
| AGATCCTGTTCATGAAACAT+GGG | - | tig0020424:63648-63667 | Msa1381260:intron | 35.0% | |
| TAACATGGACAAGTGTTACA+AGG | + | tig0020424:63777-63796 | None:intergenic | 35.0% | |
| TCCTATATAGTCACTATTCC+AGG | - | tig0020424:63805-63824 | Msa1381260:CDS | 35.0% | |
| CCTATATAGTCACTATTCCA+GGG | - | tig0020424:63806-63825 | Msa1381260:CDS | 35.0% | |
| TTCATATAGATGTTAGTCCC+TGG | + | tig0020424:63826-63845 | None:intergenic | 35.0% | |
| !! | TTCCTTTTAGGGATTCAAAC+CGG | - | tig0020424:63903-63922 | Msa1381260:CDS | 35.0% |
| CAAAACTGGTGCATATTACT+GGG | - | tig0020424:63950-63969 | Msa1381260:intron | 35.0% | |
| GCATATTACTGGGACTAAAT+AGG | - | tig0020424:63960-63979 | Msa1381260:intron | 35.0% | |
| CCTAAATGCTTGAATGGTAA+CGG | - | tig0020424:64055-64074 | Msa1381260:intron | 35.0% | |
| AGTATAACGGTTAGTAGTCA+TGG | + | tig0020424:64144-64163 | None:intergenic | 35.0% | |
| ACCATAATTGTACTCAGGTA+TGG | - | tig0020424:64463-64482 | Msa1381260:intron | 35.0% | |
| TCCATACCTGAGTACAATTA+TGG | + | tig0020424:64467-64486 | None:intergenic | 35.0% | |
| TGCTGCTACAAATATTAGAG+TGG | + | tig0020424:64506-64525 | None:intergenic | 35.0% | |
| ATATATAGCACACAAGCTGA+AGG | - | tig0020424:64546-64565 | Msa1381260:intron | 35.0% | |
| ATGGGACTATGACATAAATC+TGG | - | tig0020424:64576-64595 | Msa1381260:intron | 35.0% | |
| ATGACATAAATCTGGTGACT+TGG | - | tig0020424:64584-64603 | Msa1381260:intron | 35.0% | |
| GTATAGACAAAGAGGAATGA+TGG | + | tig0020424:64638-64657 | None:intergenic | 35.0% | |
| AGGATTACGTATAGACAAAG+AGG | + | tig0020424:64646-64665 | None:intergenic | 35.0% | |
| GTTCAACTATTCTGCCTATA+TGG | - | tig0020424:64694-64713 | Msa1381260:intron | 35.0% | |
| CAAACAGGGAATATCCATAT+AGG | + | tig0020424:64711-64730 | None:intergenic | 35.0% | |
| AGCTGGAATAAAGACAAACA+GGG | + | tig0020424:64725-64744 | None:intergenic | 35.0% | |
| CAAACACTGCACAAAACAAA+AGG | + | tig0020424:64823-64842 | None:intergenic | 35.0% | |
| GAATATATCCAATGGGACAA+TGG | + | tig0020424:64847-64866 | None:intergenic | 35.0% | |
| TCCCATTGGATATATTCAGA+TGG | - | tig0020424:64850-64869 | Msa1381260:CDS | 35.0% | |
| CCCATCTGAATATATCCAAT+GGG | + | tig0020424:64854-64873 | None:intergenic | 35.0% | |
| CCCATTGGATATATTCAGAT+GGG | - | tig0020424:64851-64870 | Msa1381260:CDS | 35.0% | |
| ACCCATCTGAATATATCCAA+TGG | + | tig0020424:64855-64874 | None:intergenic | 35.0% | |
| ! | TGGTATTTTTCTGTTGCAGT+TGG | - | tig0020424:64974-64993 | Msa1381260:intron | 35.0% |
| CAATCCAGTTTCCTCTTAAA+CGG | + | tig0020424:65039-65058 | None:intergenic | 35.0% | |
| TCACATTAACAAGGCAACTT+AGG | - | tig0020424:65277-65296 | Msa1381260:five_prime_UTR | 35.0% | |
| TTCAGTTAACCTCTTGATGT+TGG | - | tig0020424:65316-65335 | Msa1381260:five_prime_UTR | 35.0% | |
| TCAGTTAACCTCTTGATGTT+GGG | - | tig0020424:65317-65336 | Msa1381260:five_prime_UTR | 35.0% | |
| TGTGGATCTGAAGAAGAAGA+AGG | - | tig0020424:61568-61587 | Msa1381260:three_prime_UTR | 40.0% | |
| GAAGAAGGAAAGATGATGCA+AGG | - | tig0020424:61583-61602 | Msa1381260:three_prime_UTR | 40.0% | |
| AACGGATCACTTTCCATTGT+CGG | - | tig0020424:61850-61869 | Msa1381260:CDS | 40.0% | |
| AATGAAATTCGCGCTACTTG+CGG | + | tig0020424:61879-61898 | None:intergenic | 40.0% | |
| AAAATACCATCTGCATCTCG+AGG | + | tig0020424:61997-62016 | None:intergenic | 40.0% | |
| TTCATGGTGACTAGCAATGA+TGG | + | tig0020424:62144-62163 | None:intergenic | 40.0% | |
| GTTCAGGGAGATAACAACAT+AGG | - | tig0020424:62192-62211 | Msa1381260:CDS | 40.0% | |
| AGTAGAGGAGATGACATCAA+AGG | - | tig0020424:62480-62499 | Msa1381260:intron | 40.0% | |
| GTAGAGGAGATGACATCAAA+GGG | - | tig0020424:62481-62500 | Msa1381260:intron | 40.0% | |
| CTGATATTGGAGATACTCGA+CGG | - | tig0020424:62522-62541 | Msa1381260:intron | 40.0% | |
| TTCTGTGTGTGAATGTCTGA+TGG | - | tig0020424:62678-62697 | Msa1381260:intron | 40.0% | |
| AGAAAGATGTGACTGGAAGA+AGG | - | tig0020424:62706-62725 | Msa1381260:intron | 40.0% | |
| ACTGGAAGAAGGAACTGTAA+GGG | - | tig0020424:62717-62736 | Msa1381260:intron | 40.0% | |
| AAGGAACTGTAAGGGAAACA+TGG | - | tig0020424:62725-62744 | Msa1381260:intron | 40.0% | |
| AGGAACTGTAAGGGAAACAT+GGG | - | tig0020424:62726-62745 | Msa1381260:intron | 40.0% | |
| !! | ATACTTCGGATGTTCTAGAG+AGG | - | tig0020424:62984-63003 | Msa1381260:intron | 40.0% |
| GTCTACTTACAAATCAGGGT+TGG | + | tig0020424:63062-63081 | None:intergenic | 40.0% | |
| GTAGCTAAATTGGTGAGTTG+TGG | - | tig0020424:63208-63227 | Msa1381260:intron | 40.0% | |
| !!! | CATTATTTTAGGACTGCCAG+TGG | + | tig0020424:63234-63253 | None:intergenic | 40.0% |
| CTATACTCAGTTCACTTCTC+CGG | + | tig0020424:63568-63587 | None:intergenic | 40.0% | |
| GAAGTGAACTGAGTATAGTC+AGG | - | tig0020424:63570-63589 | Msa1381260:intron | 40.0% | |
| AACTCCCATGTTTCATGAAC+AGG | + | tig0020424:63655-63674 | None:intergenic | 40.0% | |
| AACTCCCATGTTTCATGAAC+AGG | + | tig0020424:63655-63674 | None:intergenic | 40.0% | |
| CCCTGGAATAGTGACTATAT+AGG | + | tig0020424:63809-63828 | None:intergenic | 40.0% | |
| CAAGGACTTGAACCAAAACA+AGG | - | tig0020424:63866-63885 | Msa1381260:CDS | 40.0% | |
| !!! | GTTGCTTTTGGTCCTTGTTT+TGG | + | tig0020424:63881-63900 | None:intergenic | 40.0% |
| !! | TCCTTTTAGGGATTCAAACC+GGG | - | tig0020424:63904-63923 | Msa1381260:intron | 40.0% |
| AAACCGGGTAGAATGTTGTA+GGG | - | tig0020424:63919-63938 | Msa1381260:intron | 40.0% | |
| AATCCCTACAACATTCTACC+CGG | + | tig0020424:63925-63944 | None:intergenic | 40.0% | |
| GTAGGGATTAAAGCCAAAAC+TGG | - | tig0020424:63936-63955 | Msa1381260:intron | 40.0% | |
| ! | CCAGTAATATGCACCAGTTT+TGG | + | tig0020424:63952-63971 | None:intergenic | 40.0% |
| CCAAAACTGGTGCATATTAC+TGG | - | tig0020424:63949-63968 | Msa1381260:intron | 40.0% | |
| TCCACTCCTAAATGCTTGAA+TGG | - | tig0020424:64049-64068 | Msa1381260:intron | 40.0% | |
| ACCATTCAAGCATTTAGGAG+TGG | + | tig0020424:64053-64072 | None:intergenic | 40.0% | |
| CCGTTACCATTCAAGCATTT+AGG | + | tig0020424:64058-64077 | None:intergenic | 40.0% | |
| AGCTCACCATAATTGTACTC+AGG | - | tig0020424:64458-64477 | Msa1381260:intron | 40.0% | |
| ACAAGCTGAAGGATCAGAAA+TGG | - | tig0020424:64557-64576 | Msa1381260:intron | 40.0% | |
| CAAGCTGAAGGATCAGAAAT+GGG | - | tig0020424:64558-64577 | Msa1381260:intron | 40.0% | |
| !!! | TGGTCTGCTGGTTTGTTTTA+TGG | - | tig0020424:64604-64623 | Msa1381260:intron | 40.0% |
| CCTCAAATACTTCTCTGTAC+CGG | - | tig0020424:64663-64682 | Msa1381260:intron | 40.0% | |
| GAGCTGGAATAAAGACAAAC+AGG | + | tig0020424:64726-64745 | None:intergenic | 40.0% | |
| GTTTGTCTTTATTCCAGCTC+TGG | - | tig0020424:64726-64745 | Msa1381260:intron | 40.0% | |
| ATATTCAGATGGGTGATTGC+AGG | - | tig0020424:64861-64880 | Msa1381260:intron | 40.0% | |
| GTTCATGTCAGCAACATTTG+TGG | - | tig0020424:64893-64912 | Msa1381260:intron | 40.0% | |
| CATTTGTGGCACTTAACCTT+CGG | - | tig0020424:64907-64926 | Msa1381260:intron | 40.0% | |
| ATTTGTGGCACTTAACCTTC+GGG | - | tig0020424:64908-64927 | Msa1381260:intron | 40.0% | |
| GTATCCGTTTAAGAGGAAAC+TGG | - | tig0020424:65032-65051 | Msa1381260:CDS | 40.0% | |
| GAAGGAAAGATGATGCAAGG+AGG | - | tig0020424:61586-61605 | Msa1381260:three_prime_UTR | 45.0% | |
| GTTCGTACCAGTGAACTTGA+CGG | + | tig0020424:61779-61798 | None:intergenic | 45.0% | |
| CTCTCCCAAACAGTCTTACA+AGG | - | tig0020424:62409-62428 | Msa1381260:intron | 45.0% | |
| GAGATGACATCAAAGGGACT+TGG | - | tig0020424:62487-62506 | Msa1381260:intron | 45.0% | |
| GACTGGAAGAAGGAACTGTA+AGG | - | tig0020424:62716-62735 | Msa1381260:intron | 45.0% | |
| TCATCAGAAGAACCAGATGC+AGG | + | tig0020424:62899-62918 | None:intergenic | 45.0% | |
| TTCTTCTGATGAACCTCAGC+AGG | - | tig0020424:62907-62926 | Msa1381260:intron | 45.0% | |
| TCTTCTGATGAACCTCAGCA+GGG | - | tig0020424:62908-62927 | Msa1381260:intron | 45.0% | |
| ! | ACCCGGTTTGAATCCCTAAA+AGG | + | tig0020424:63908-63927 | None:intergenic | 45.0% |
| CAAACCGGGTAGAATGTTGT+AGG | - | tig0020424:63918-63937 | Msa1381260:intron | 45.0% | |
| ! | GGCCTAATTTTTACTCCCTC+CGG | - | tig0020424:64225-64244 | Msa1381260:intron | 45.0% |
| GACCGGAGGGAGTAAAAATT+AGG | + | tig0020424:64230-64249 | None:intergenic | 45.0% | |
| TACTCAGGTATGGACCATTC+TGG | - | tig0020424:64473-64492 | Msa1381260:intron | 45.0% | |
| AGAGTGGTGCAAATCCAGAA+TGG | + | tig0020424:64490-64509 | None:intergenic | 45.0% | |
| !! | CCGGTACAGAGAAGTATTTG+AGG | + | tig0020424:64666-64685 | None:intergenic | 45.0% |
| CAAATACTTCTCTGTACCGG+CGG | - | tig0020424:64666-64685 | Msa1381260:intron | 45.0% | |
| ! | AAATACTTCTCTGTACCGGC+GGG | - | tig0020424:64667-64686 | Msa1381260:intron | 45.0% |
| AATAGTTGAACAAGTCCCGC+CGG | + | tig0020424:64685-64704 | None:intergenic | 45.0% | |
| GTGTTTGTCCATTGTCCCAT+TGG | - | tig0020424:64836-64855 | Msa1381260:CDS | 45.0% | |
| ATATCATGTCGGCAGGTGAA+AGG | - | tig0020424:64934-64953 | Msa1381260:intron | 45.0% | |
| AGGTGGTTCTTCATTGTTGC+TGG | - | tig0020424:64954-64973 | Msa1381260:intron | 45.0% | |
| !! | TCTGTTGCAGTTGGCTTTAG+CGG | - | tig0020424:64983-65002 | Msa1381260:intron | 45.0% |
| CTTAAACGGATACCGTGAAG+AGG | + | tig0020424:65025-65044 | None:intergenic | 45.0% | |
| CTTCACGGTATCCGTTTAAG+AGG | - | tig0020424:65025-65044 | Msa1381260:CDS | 45.0% | |
| GGAAAGATGATGCAAGGAGG+AGG | - | tig0020424:61589-61608 | Msa1381260:three_prime_UTR | 50.0% | |
| CTACTTGCGGAATCCGACAA+TGG | + | tig0020424:61866-61885 | None:intergenic | 50.0% | |
| ATTTCCTCCATCGCAAGCTC+AGG | - | tig0020424:61945-61964 | Msa1381260:CDS | 50.0% | |
| TTTCCTCCATCGCAAGCTCA+GGG | - | tig0020424:61946-61965 | Msa1381260:CDS | 50.0% | |
| CAAGCTCAGGGGAAGATTAC+CGG | - | tig0020424:61958-61977 | Msa1381260:intron | 50.0% | |
| GGAAGATTACCGGTGGTTCT+AGG | - | tig0020424:61968-61987 | Msa1381260:intron | 50.0% | |
| ATACCATCTGCATCTCGAGG+TGG | + | tig0020424:61994-62013 | None:intergenic | 50.0% | |
| AATTGGTGAGTTGTGGCCAC+TGG | - | tig0020424:63215-63234 | Msa1381260:intron | 50.0% | |
| CCAGCTCACCGCCAAATAAA+GGG | + | tig0020424:63330-63349 | None:intergenic | 50.0% | |
| ! | CCTTTATTTGGCGGTGAGCT+GGG | - | tig0020424:63328-63347 | Msa1381260:intron | 50.0% |
| ! | CTTTATTTGGCGGTGAGCTG+GGG | - | tig0020424:63329-63348 | Msa1381260:intron | 50.0% |
| ! | GTCTTTTCTTGCTTGGCTGC+TGG | - | tig0020424:64104-64123 | Msa1381260:intron | 50.0% |
| !! | AATCTGGTGACTTGGTCTGC+TGG | - | tig0020424:64592-64611 | Msa1381260:intron | 50.0% |
| GAGAAGCAACTTACCAGAGC+TGG | + | tig0020424:64742-64761 | None:intergenic | 50.0% | |
| CCTTCGGGCACATATCATGT+CGG | - | tig0020424:64923-64942 | Msa1381260:intron | 50.0% | |
| CCAGTGAACTTGACGGTGAC+CGG | + | tig0020424:61772-61791 | None:intergenic | 55.0% | |
| TTCCTCCATCGCAAGCTCAG+GGG | - | tig0020424:61947-61966 | Msa1381260:CDS | 55.0% | |
| ATCTTCCCCTGAGCTTGCGA+TGG | + | tig0020424:61955-61974 | None:intergenic | 55.0% | |
| TCTGATGAACCTCAGCAGGG+TGG | - | tig0020424:62911-62930 | Msa1381260:intron | 55.0% | |
| ATGAACCTCAGCAGGGTGGT+TGG | - | tig0020424:62915-62934 | Msa1381260:intron | 55.0% | |
| ! | CCCTTTATTTGGCGGTGAGC+TGG | - | tig0020424:63327-63346 | Msa1381260:intron | 55.0% |
| CCCAGCTCACCGCCAAATAA+AGG | + | tig0020424:63331-63350 | None:intergenic | 55.0% | |
| CAGATGGGTGATTGCAGGTG+TGG | - | tig0020424:64866-64885 | Msa1381260:intron | 55.0% | |
| CCGACATGATATGTGCCCGA+AGG | + | tig0020424:64926-64945 | None:intergenic | 55.0% | |
| TCATGTCGGCAGGTGAAAGG+TGG | - | tig0020424:64937-64956 | Msa1381260:intron | 55.0% | |
| !! | GACCGGTGGTGGATCTGGAA+CGG | + | tig0020424:61755-61774 | None:intergenic | 60.0% |
| AACTTGACGGTGACCGGTGG+TGG | + | tig0020424:61766-61785 | None:intergenic | 60.0% | |
| GTGAACTTGACGGTGACCGG+TGG | + | tig0020424:61769-61788 | None:intergenic | 60.0% | |
| CCGGTCACCGTCAAGTTCAC+TGG | - | tig0020424:61769-61788 | Msa1381260:CDS | 60.0% | |
| TTCCCCTGAGCTTGCGATGG+AGG | + | tig0020424:61952-61971 | None:intergenic | 60.0% | |
| GCTCAGGGGAAGATTACCGG+TGG | - | tig0020424:61961-61980 | Msa1381260:intron | 60.0% | |
| TCGAGGTGGCCTAGAACCAC+CGG | + | tig0020424:61980-61999 | None:intergenic | 60.0% | |
| AGGCCACCTCGAGATGCAGA+TGG | - | tig0020424:61988-62007 | Msa1381260:intron | 60.0% | |
| !! | CTCAGCAGGGTGGTTGGCTT+CGG | - | tig0020424:62921-62940 | Msa1381260:intron | 60.0% |
| TGGGTGATTGCAGGTGTGGC+AGG | - | tig0020424:64870-64889 | Msa1381260:intron | 60.0% | |
| GGGTGATTGCAGGTGTGGCA+GGG | - | tig0020424:64871-64890 | Msa1381260:intron | 60.0% | |
| CGGGCACATATCATGTCGGC+AGG | - | tig0020424:64927-64946 | Msa1381260:intron | 60.0% | |
| GGCCGTTCCAGATCCACCAC+CGG | - | tig0020424:61750-61769 | Msa1381260:exon | 65.0% | |
| !! | ACGGTGACCGGTGGTGGATC+TGG | + | tig0020424:61760-61779 | None:intergenic | 65.0% |
| CGAAGCCAACCACCCTGCTG+AGG | + | tig0020424:62923-62942 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0020424 | gene | 61464 | 65340 | 61464 | ID=Msa1381260;Name=Msa1381260 |
| tig0020424 | mRNA | 61464 | 65340 | 61464 | ID=Msa1381260-mRNA-1;Parent=Msa1381260;Name=Msa1381260-mRNA-1;_AED=0.03;_eAED=0.03;_QI=131|1|1|1|1|1|6|297|282 |
| tig0020424 | exon | 61464 | 61967 | 61464 | ID=Msa1381260-mRNA-1:exon:7506;Parent=Msa1381260-mRNA-1 |
| tig0020424 | exon | 62057 | 62324 | 62057 | ID=Msa1381260-mRNA-1:exon:7505;Parent=Msa1381260-mRNA-1 |
| tig0020424 | exon | 63733 | 63922 | 63733 | ID=Msa1381260-mRNA-1:exon:7504;Parent=Msa1381260-mRNA-1 |
| tig0020424 | exon | 64795 | 64875 | 64795 | ID=Msa1381260-mRNA-1:exon:7503;Parent=Msa1381260-mRNA-1 |
| tig0020424 | exon | 65014 | 65053 | 65014 | ID=Msa1381260-mRNA-1:exon:7502;Parent=Msa1381260-mRNA-1 |
| tig0020424 | exon | 65147 | 65340 | 65147 | ID=Msa1381260-mRNA-1:exon:7501;Parent=Msa1381260-mRNA-1 |
| tig0020424 | five_prime_UTR | 65210 | 65340 | 65210 | ID=Msa1381260-mRNA-1:five_prime_utr;Parent=Msa1381260-mRNA-1 |
| tig0020424 | CDS | 65147 | 65209 | 65147 | ID=Msa1381260-mRNA-1:cds;Parent=Msa1381260-mRNA-1 |
| tig0020424 | CDS | 65014 | 65053 | 65014 | ID=Msa1381260-mRNA-1:cds;Parent=Msa1381260-mRNA-1 |
| tig0020424 | CDS | 64795 | 64875 | 64795 | ID=Msa1381260-mRNA-1:cds;Parent=Msa1381260-mRNA-1 |
| tig0020424 | CDS | 63733 | 63922 | 63733 | ID=Msa1381260-mRNA-1:cds;Parent=Msa1381260-mRNA-1 |
| tig0020424 | CDS | 62057 | 62324 | 62057 | ID=Msa1381260-mRNA-1:cds;Parent=Msa1381260-mRNA-1 |
| tig0020424 | CDS | 61761 | 61967 | 61761 | ID=Msa1381260-mRNA-1:cds;Parent=Msa1381260-mRNA-1 |
| tig0020424 | three_prime_UTR | 61464 | 61760 | 61464 | ID=Msa1381260-mRNA-1:three_prime_utr;Parent=Msa1381260-mRNA-1 |
| Gene Sequence |
| Protein sequence |
