AlfalfaGEDB | Msa1389900

M. sativa cultivar zhongmu-4 / Msa1389900

KEGG: -
GO: GO:0003674 GO:0005102 GO:0005179 GO:0005488 GO:0005515 GO:0005575 GO:0005576 GO:0005911 GO:0007154 GO:0007165 GO:0007267 GO:0008150 GO:0009506 GO:0009966 GO:0009987 GO:0010469 GO:0010646 GO:0019722 GO:0019932 GO:0023051 GO:0023052 GO:0030054 GO:0030545 GO:0035556 GO:0048018 GO:0048046 GO:0048583 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0065007 GO:0065009 GO:0098772
PFAM: PF05498.14

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1389900	XP_003629616.1	95.798	119	4	1	1	118	1	119	1.12e-76	232

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1389900	sp\|O23262\|RLF32_ARATH	46.087	115	47	5	10	118	12	117	1.04e-24	93.6

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1389900	B7FMN1	95.798	119	4	1	1	118	1	119	5.35e-77	232

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0017930	Msa1389900	0.810583	1.072360e-50	-8.615850e-47
Msa0077340	Msa1389900	0.836447	9.310122e-57	-8.615850e-47
Msa0077560	Msa1389900	0.805250	1.461860e-49	-8.615850e-47
Msa0093850	Msa1389900	0.833672	4.662475e-56	-8.615850e-47
Msa0105650	Msa1389900	0.801642	8.175599e-49	-8.615850e-47
Msa0106620	Msa1389900	0.802894	4.516455e-49	-8.615850e-47
Msa0106710	Msa1389900	0.802771	4.790222e-49	-8.615850e-47
Msa0125360	Msa1389900	0.814005	1.919754e-51	-8.615850e-47
Msa0140770	Msa1389900	-0.804373	2.228398e-49	-8.615850e-47
Msa0142430	Msa1389900	0.805313	1.418128e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1389900	MtrunA17_Chr8g0378021	95.690	116	4	1	1	115	1	116	9.80e-79	227
Msa1389900	MtrunA17_Chr4g0067331	37.500	120	53	5	14	115	10	125	3.55e-14	63.9
Msa1389900	MtrunA17_Chr7g0269131	35.294	119	62	4	10	117	4	118	1.45e-11	57.0

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1389900	AT4G14010.1	46.087	115	47	5	10	118	12	117	1.05e-25	93.6
Msa1389900	AT1G02900.1	38.400	125	63	4	1	116	1	120	4.00e-15	66.6
Msa1389900	AT4G15800.1	46.341	82	37	3	37	115	38	115	3.39e-13	61.6

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Find 20 sgRNAs with CRISPR-Local

Find 22 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAGCTTATAGTAAATCTGCA+GGG	0.695265	tig0021306:-10273	Msa1389900:CDS
AGAGATAAACCAGTTTGTAA+TGG	0.535103	tig0021306:-10310	Msa1389900:CDS
CAAAGGAGATACATTTCTGA+AGG	0.595659	tig0021306:-10343	Msa1389900:CDS
CATCATGCAAGCATATGCAA+TGG	0.634173	tig0021306:-10436	Msa1389900:CDS
CCAGTTTGTAATGGTGGTGC+AGG	0.525366	tig0021306:-10301	Msa1389900:CDS
CCTCTATTATAAGGATTTGA+AGG	0.425611	tig0021306:+10238	None:intergenic
CCTGCACCACCATTACAAAC+TGG	0.451169	tig0021306:+10301	None:intergenic
CCTTCAAATCCTTATAATAG+AGG	0.483889	tig0021306:-10238	Msa1389900:CDS
CTATTATAAGGATTTGAAGG+TGG	0.614457	tig0021306:+10241	None:intergenic
GAAGAGCATGAAGTAGAAGA+AGG	0.591507	tig0021306:+10504	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TCAAGAAGATGAACAATTGA+TGG	-	tig0021306:10341-10360	Msa1389900:CDS	30.0%
AGAGATAAACCAGTTTGTAA+TGG	-	tig0021306:10426-10445	Msa1389900:CDS	30.0%
AAGCTTATAGTAAATCTGCA+GGG	-	tig0021306:10463-10482	Msa1389900:CDS	30.0%
CTATTATAAGGATTTGAAGG+TGG	+	tig0021306:10498-10517	None:intergenic	30.0%
CCTCTATTATAAGGATTTGA+AGG	+	tig0021306:10501-10520	None:intergenic	30.0%
CCTTCAAATCCTTATAATAG+AGG	-	tig0021306:10498-10517	Msa1389900:CDS	30.0%
TTCTTGATTGCATTCAGCTA+TGG	+	tig0021306:10328-10347	None:intergenic	35.0%
CAAAGGAGATACATTTCTGA+AGG	-	tig0021306:10393-10412	Msa1389900:CDS	35.0%
GATAAACCAGTTTGTAATGG+TGG	-	tig0021306:10429-10448	Msa1389900:CDS	35.0%
GAAGCTTATAGTAAATCTGC+AGG	-	tig0021306:10462-10481	Msa1389900:CDS	35.0%

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Chromosome	Type	Strat	End	Strand	Name
tig0021306	gene	10201	10557	10201	ID=Msa1389900;Name=Msa1389900
tig0021306	mRNA	10201	10557	10201	ID=Msa1389900-mRNA-1;Parent=Msa1389900;Name=Msa1389900-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|118
tig0021306	exon	10201	10557	10201	ID=Msa1389900-mRNA-1:exon:11919;Parent=Msa1389900-mRNA-1
tig0021306	CDS	10201	10557	10201	ID=Msa1389900-mRNA-1:cds;Parent=Msa1389900-mRNA-1

Gene Sequence	>Msa1389900 ATGGACTCAAAATCTAGCATTAAACTCCTGACCTTCTTCTACTTCATGCTCTTCAGCTTCATGAATTTAAGCAGCACTGTAATATCATTGAGTAGTACTCATCATGCAAGCATATGCAATGGTTCCATAGCTGAATGCAATCAAGAAGATGAACAATTGATGGAGTCAGAAATAAGCAGAAGGTTTTTGGAGCAAAGGAGATACATTTCTGAAGGAGCTCTTAAAAGAGATAAACCAGTTTGTAATGGTGGTGCAGGTGGTGAAGCTTATAGTAAATCTGCAGGGTGTATTCCTCCACCTTCAAATCCTTATAATAGAGGATGTTCTAAGTATTATCGTTGTAGGTCTGATTCTTGA
Protein sequence	>Msa1389900 MDSKSSIKLLTFFYFMLFSFMNLSSTVISLSSTHHASICNGSIAECNQEDEQLMESEISRRFLEQRRYISEGALKRDKPVCNGGAGGEAYSKSAGCIPPPSNPYNRGCSKYYRCRSDS*