AlfalfaGEDB | Msa1035060

M. sativa cultivar zhongmu-4 / Msa1035060

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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TFs/TRs:

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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0136650	Msa1035060	0.809137	2.195505e-50	-8.615850e-47
Msa0222560	Msa1035060	0.803537	3.324589e-49	-8.615850e-47
Msa0298500	Msa1035060	0.803600	3.226076e-49	-8.615850e-47
Msa0301820	Msa1035060	0.813114	3.014860e-51	-8.615850e-47
Msa0336390	Msa1035060	0.805474	1.312042e-49	-8.615850e-47
Msa0370490	Msa1035060	0.805875	1.080779e-49	-8.615850e-47
Msa0380620	Msa1035060	0.806775	6.981772e-50	-8.615850e-47
Msa0417970	Msa1035060	0.817333	3.481334e-52	-8.615850e-47
Msa0430260	Msa1035060	0.815424	9.310773e-52	-8.615850e-47
Msa0435570	Msa1035060	0.803933	2.751949e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Find 233 sgRNAs with CRISPR-Local

Find 318 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATCAGTGGCTCCTCAAA+CGG	0.484536	7_1:+70798463	None:intergenic
AAAGAGACCAAACCCCACCT+TGG	0.627049	7_1:-70799204	Msa1035060:three_prime_UTR
AAAGTTGGACTTGCTTGGAT+TGG	0.431355	7_1:-70796907	Msa1035060:three_prime_UTR
AAATGCAGTATCTTTATGTT+AGG	0.287072	7_1:-70799131	Msa1035060:three_prime_UTR
AACAGAAAATCTTCTGGAGG+AGG	0.502805	7_1:+70799228	None:intergenic
AACCTCCTGAAGAAATTGAG+TGG	0.658154	7_1:+70796960	None:intergenic
AACTCTTCATCTAGTTCGTC+AGG	0.348361	7_1:+70797269	None:intergenic
AACTGTCACTTGCACCATGG+TGG	0.724351	7_1:-70797935	Msa1035060:three_prime_UTR
AAGAAATTGAGTGGCACAGA+AGG	0.506210	7_1:+70796969	None:intergenic
AAGAGGTAAAGGAAAATTGT+TGG	0.485200	7_1:+70797377	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TATTGCAAAAAGGCAAAGTA+GGG	-	chr7_1:70796758-70796777	Msa1035060:three_prime_UTR	30.0%
AAAAAATATTGGGGTGTGTT+TGG	-	chr7_1:70797183-70797202	Msa1035060:three_prime_UTR	30.0%
TGTTCTTAGAGAGTGAAAAT+CGG	-	chr7_1:70797418-70797437	Msa1035060:three_prime_UTR	30.0%
TGCAATTAATGCATATCTAG+TGG	+	chr7_1:70797547-70797566	None:intergenic	30.0%
TCTTTCAACAGAAAATCTTC+TGG	+	chr7_1:70797823-70797842	None:intergenic	30.0%
ATGCCGATGAAATCAAATAA+TGG	-	chr7_1:70798930-70798949	Msa1035060:three_prime_UTR	30.0%
TGCCGATGAAATCAAATAAT+GGG	-	chr7_1:70798931-70798950	Msa1035060:three_prime_UTR	30.0%
GGACAAAGAGATTCAAAAAT+CGG	-	chr7_1:70799143-70799162	Msa1035060:three_prime_UTR	30.0%
AAGAGGTAAAGGAAAATTGT+TGG	+	chr7_1:70799668-70799687	None:intergenic	30.0%
AAAAATCCACAAAATCTGGT+GGG	+	chr7_1:70800214-70800233	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_1	gene	70796690	70800374	70796690	ID=Msa1035060;Name=Msa1035060
chr7_1	mRNA	70796690	70800374	70796690	ID=Msa1035060-mRNA-1;Parent=Msa1035060;Name=Msa1035060-mRNA-1;_AED=0.10;_eAED=0.13;_QI=0\|0\|0.33\|1\|0\|0\|3\|2579\|92
chr7_1	exon	70796690	70799377	70796690	ID=Msa1035060-mRNA-1:exon:17033;Parent=Msa1035060-mRNA-1
chr7_1	exon	70799609	70799637	70799609	ID=Msa1035060-mRNA-1:exon:17032;Parent=Msa1035060-mRNA-1
chr7_1	exon	70800234	70800374	70800234	ID=Msa1035060-mRNA-1:exon:17031;Parent=Msa1035060-mRNA-1
chr7_1	CDS	70800234	70800374	70800234	ID=Msa1035060-mRNA-1:cds;Parent=Msa1035060-mRNA-1
chr7_1	CDS	70799609	70799637	70799609	ID=Msa1035060-mRNA-1:cds;Parent=Msa1035060-mRNA-1
chr7_1	CDS	70799269	70799377	70799269	ID=Msa1035060-mRNA-1:cds;Parent=Msa1035060-mRNA-1
chr7_1	three_prime_UTR	70796690	70799268	70796690	ID=Msa1035060-mRNA-1:three_prime_utr;Parent=Msa1035060-mRNA-1

Gene Sequence	>Msa1035060 ATGAAGTGGGGTCCAGAGCCATTCCTTCATCCACCACCCTGTACAGCAACAGAGGTCCAGTCCAACACTATTGCAAAAAGGCAAAGTAGGGAGCTTCTTTGTATATTTTCTACAGATTCATCAGATCCTATCAAAGGAAAAAGAGTGAAAATCGGATCTGAAGGTTTCAAGCTCCTTGGAACAGTTCATTTTTTAATTCAAAAACACATTTTCAAGCTCCTACCACTAGTGAAGAAAAAAAAATCAATATTTGAAATTGTTGCTTCTGTGATTCTTTGA
Protein sequence	>Msa1035060 MKWGPEPFLHPPPCTATEVQSNTIAKRQSRELLCIFSTDSSDPIKGKRVKIGSEGFKLLGTVHFLIQKHIFKLLPLVKKKKSIFEIVASVIL*