AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1035060

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 233 sgRNAs with CRISPR-Local

Find 318 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGTTTATGTGAAGGCTATTT+TGG 0.149556 7_1:-70798572 Msa1035060:three_prime_UTR
TGAAAAGCATGTTGTTATTA+TGG 0.199124 7_1:-70798320 Msa1035060:three_prime_UTR
CTGTGCCACTCAATTTCTTC+AGG 0.239203 7_1:-70796965 Msa1035060:three_prime_UTR
TCCAACTGGGGTGAAGAAAA+TGG 0.246387 7_1:-70797801 Msa1035060:three_prime_UTR
TCGAGCTGGCTGACTGTTAA+TGG 0.283050 7_1:+70797680 None:intergenic
AAATGCAGTATCTTTATGTT+AGG 0.287072 7_1:-70799131 Msa1035060:three_prime_UTR
CTTCTAGTTCTTCATCCAAC+TGG 0.290568 7_1:-70797815 Msa1035060:three_prime_UTR
CTCCTAAGCTTTGGTATTTG+AGG 0.293908 7_1:-70798651 Msa1035060:three_prime_UTR
CCTAGCAGTTCCTCTTTGTT+AGG 0.294279 7_1:+70798418 None:intergenic
ACAAACTGTTGTCGGGGATT+TGG 0.302220 7_1:-70797168 Msa1035060:three_prime_UTR
AGAAGGTGGTTATCATGTTT+TGG 0.311177 7_1:-70798239 Msa1035060:three_prime_UTR
TTGGAGTTTGGTACTATAGA+TGG 0.323138 7_1:-70797349 Msa1035060:three_prime_UTR
ATGCCGATGAAATCAAATAA+TGG 0.326327 7_1:-70798112 Msa1035060:three_prime_UTR
GGGAGCTGATGCTGGCTGTT+TGG 0.327899 7_1:-70798780 Msa1035060:three_prime_UTR
TCTTTCAACAGAAAATCTTC+TGG 0.345233 7_1:+70799222 None:intergenic
AACTCTTCATCTAGTTCGTC+AGG 0.348361 7_1:+70797269 None:intergenic
TGCGGCGCCAGAGGACTATC+AGG 0.355118 7_1:+70798844 None:intergenic
GTGGGGATATTGAATGCTTC+GGG 0.361234 7_1:-70798139 Msa1035060:three_prime_UTR
CTGGACCTCTGTTGCTGTAC+AGG 0.364179 7_1:+70800315 None:intergenic
CTGATGCTCTTGCAAATATT+AGG 0.364946 7_1:-70798690 Msa1035060:three_prime_UTR
ATTGTTGGTAAGATAAGTTC+AGG 0.373990 7_1:+70797392 None:intergenic
TTTGAATCTCTTTGTCCTCC+AGG 0.374663 7_1:+70797905 None:intergenic
CAAGTTGTGGCTCTTCTCAC+TGG 0.375373 7_1:-70797032 Msa1035060:three_prime_UTR
TCCACAGCTGTTTCGCCGTT+GGG 0.377277 7_1:+70798185 None:intergenic
GCTTACTGTGTAGCAAAGTA+TGG 0.377309 7_1:-70798073 Msa1035060:three_prime_UTR
TGAATCAGAACTGTTGTGAT+AGG 0.382320 7_1:+70797443 None:intergenic
TCCTAAGCTTTGGTATTTGA+GGG 0.385923 7_1:-70798650 Msa1035060:three_prime_UTR
GACTGCAGTCTTTGCTGAGC+TGG 0.390838 7_1:-70797130 Msa1035060:three_prime_UTR
GAAGGATCGGATTCAGGCTT+CGG 0.396181 7_1:-70798962 Msa1035060:three_prime_UTR
GCTGATGCTGGCTGTTTGGA+TGG 0.398155 7_1:-70798776 Msa1035060:three_prime_UTR
CACCTTGGTGGTAAGGTCTC+TGG 0.400603 7_1:-70799189 Msa1035060:three_prime_UTR
GAAGTCGAGTATTGGAGTTT+TGG 0.405068 7_1:-70798164 Msa1035060:three_prime_UTR
CCGTGCACTGTCATTACAAT+TGG 0.408435 7_1:-70797968 Msa1035060:three_prime_UTR
AGTGGGGATATTGAATGCTT+CGG 0.413329 7_1:-70798140 Msa1035060:three_prime_UTR
TCGGATGCGGCGACGGTTAG+TGG 0.413525 7_1:-70798715 Msa1035060:three_prime_UTR
GTCTGATAAGGGAAGATTCC+CGG 0.415295 7_1:-70798596 Msa1035060:three_prime_UTR
GAGAAATTCAACTGGCTGTA+AGG 0.416142 7_1:-70797778 Msa1035060:three_prime_UTR
TTCCACAGCTGTTTCGCCGT+TGG 0.421819 7_1:+70798184 None:intergenic
GACTAATCCTGAATGGAATC+AGG 0.424124 7_1:-70798998 Msa1035060:three_prime_UTR
TTCTAGTTCTTCATCCAACT+GGG 0.424420 7_1:-70797814 Msa1035060:three_prime_UTR
CATATGAGGGTCTGTCTAGA+AGG 0.427742 7_1:-70798256 Msa1035060:three_prime_UTR
TGCCGATGAAATCAAATAAT+GGG 0.427885 7_1:-70798111 Msa1035060:three_prime_UTR
CTACCTGCGAAAGATGTTAC+TGG 0.428150 7_1:-70799090 Msa1035060:three_prime_UTR
TCCATGTGAGGTGGGTGCCT+TGG 0.428924 7_1:+70797323 None:intergenic
ACAAACCTGTGAACACTAGA+TGG 0.430517 7_1:-70798351 Msa1035060:three_prime_UTR
AAAGTTGGACTTGCTTGGAT+TGG 0.431355 7_1:-70796907 Msa1035060:three_prime_UTR
AGAAGAGCCACAACTTGAAA+TGG 0.431378 7_1:+70797038 None:intergenic
GAATGAGGATTTGATGTTTG+TGG 0.433783 7_1:-70798494 Msa1035060:three_prime_UTR
AGGAAGAGTGATAAGGTGAG+AGG 0.436722 7_1:-70798802 Msa1035060:three_prime_UTR
TGTTATTCCCTTACAGATGA+TGG 0.437429 7_1:-70798389 Msa1035060:three_prime_UTR
TTGCATGCTTTGAGGAAAGT+TGG 0.438928 7_1:-70796922 Msa1035060:three_prime_UTR
CTTACCACCAAGGTGGGGTT+TGG 0.439462 7_1:+70799197 None:intergenic
TGAGGAAAGTTGGACTTGCT+TGG 0.439604 7_1:-70796912 Msa1035060:three_prime_UTR
AATGCAGTATCTTTATGTTA+GGG 0.439908 7_1:-70799130 Msa1035060:three_prime_UTR
GGACTTGCAACCGTCTGATA+AGG 0.440825 7_1:-70798608 Msa1035060:three_prime_UTR
CATTTGCTCAACAAGGTCAT+AGG 0.445253 7_1:+70799149 None:intergenic
CTATCAGGAGGAACCCTCTT+CGG 0.447291 7_1:+70798859 None:intergenic
GGTTTGACCAAATCTGCAAT+TGG 0.447777 7_1:-70797472 Msa1035060:three_prime_UTR
GGAGGTAGTGGAATATATGC+TGG 0.448097 7_1:-70797588 Msa1035060:three_prime_UTR
CCAAGCTTGACTTCAACATA+AGG 0.450353 7_1:+70799057 None:intergenic
CTCCCATTATTTGATTTCAT+CGG 0.451057 7_1:+70798109 None:intergenic
TTGCAAGCAGGATTCATATG+AGG 0.451536 7_1:-70798270 Msa1035060:three_prime_UTR
AGTCCAACACTATTGCAAAA+AGG 0.454483 7_1:-70800294 Msa1035060:CDS
TGTGACTCCATTTCAAGTTG+TGG 0.455642 7_1:-70797045 Msa1035060:three_prime_UTR
TGCTGAGCCACCACTGAGAA+AGG 0.458401 7_1:-70797609 Msa1035060:three_prime_UTR
TGTATCTATCTCCTAAGCTT+TGG 0.469644 7_1:-70798660 Msa1035060:three_prime_UTR
CCAACTGGGGTGAAGAAAAT+GGG 0.470245 7_1:-70797800 Msa1035060:three_prime_UTR
GTAGGATACAAACTGTTGTC+GGG 0.474674 7_1:-70797175 Msa1035060:three_prime_UTR
GGTGGATGAAGGAATGGCTC+TGG 0.477478 7_1:+70800340 None:intergenic
TCTCCGGTCCATCATCTGTA+AGG 0.477605 7_1:+70798381 None:intergenic
GGAGGATAGGAAGAGTGATA+AGG 0.478220 7_1:-70798809 Msa1035060:three_prime_UTR
CAGGTTTGTGATCGAGTCTC+CGG 0.480206 7_1:+70798365 None:intergenic
AAGCATGTTGTTATTATGGA+AGG 0.483057 7_1:-70798316 Msa1035060:three_prime_UTR
TGCCACTCAATTTCTTCAGG+AGG 0.483882 7_1:-70796962 Msa1035060:three_prime_UTR
GGATGAATGTAATGCATCTT+GGG 0.484486 7_1:+70797701 None:intergenic
AAAATCAGTGGCTCCTCAAA+CGG 0.484536 7_1:+70798463 None:intergenic
CAGCTGTGGAAGTCGAGTAT+TGG 0.484621 7_1:-70798172 Msa1035060:three_prime_UTR
TCTGTTGCTGTACAGGGTGG+TGG 0.485062 7_1:+70800322 None:intergenic
AAGAGGTAAAGGAAAATTGT+TGG 0.485200 7_1:+70797377 None:intergenic
GAAAATGGGAGAAATTCAAC+TGG 0.487642 7_1:-70797786 Msa1035060:three_prime_UTR
GGAAGAGTGATAAGGTGAGA+GGG 0.488372 7_1:-70798801 Msa1035060:three_prime_UTR
GGTGAGAGGGGAGCTGATGC+TGG 0.489453 7_1:-70798788 Msa1035060:three_prime_UTR
CAAACCCCACCTTGGTGGTA+AGG 0.491282 7_1:-70799196 Msa1035060:three_prime_UTR
GCATCCGAGTGCCACGCCTC+AGG 0.494760 7_1:+70798730 None:intergenic
GACTTGCAACCGTCTGATAA+GGG 0.495169 7_1:-70798607 Msa1035060:three_prime_UTR
TGGATGAATGTAATGCATCT+TGG 0.496196 7_1:+70797700 None:intergenic
TGTTCTTAGAGAGTGAAAAT+CGG 0.496726 7_1:-70799624 Msa1035060:intron
GTCGGGGATTTGGCGACTCA+AGG 0.497341 7_1:-70797158 Msa1035060:three_prime_UTR
ATCTTTCGCAGGTAGCTCCT+TGG 0.498641 7_1:+70799098 None:intergenic
TAGCAAAGTATGGACAGAAA+TGG 0.499639 7_1:-70798063 Msa1035060:three_prime_UTR
GGCGCCGCAGTGGTATAGAT+TGG 0.501455 7_1:-70798830 Msa1035060:three_prime_UTR
AACAGAAAATCTTCTGGAGG+AGG 0.502805 7_1:+70799228 None:intergenic
AGAAGAAGACTAATCCTGAA+TGG 0.504293 7_1:-70799005 Msa1035060:three_prime_UTR
AAGAAATTGAGTGGCACAGA+AGG 0.506210 7_1:+70796969 None:intergenic
AGCAAAGTATGGACAGAAAT+GGG 0.506383 7_1:-70798062 Msa1035060:three_prime_UTR
TGAGGCGTGGCACTCGGATG+CGG 0.507184 7_1:-70798728 Msa1035060:three_prime_UTR
TATGGAAGGGGACAAGAAGA+AGG 0.509014 7_1:-70798302 Msa1035060:three_prime_UTR
ATAGCCTTCACATAAACCTC+CGG 0.509665 7_1:+70798577 None:intergenic
GAAGAGTGATAAGGTGAGAG+GGG 0.511445 7_1:-70798800 Msa1035060:three_prime_UTR
CAAGCTTGACTTCAACATAA+GGG 0.511908 7_1:+70799058 None:intergenic
CTCAGCACGGCTAAGTCTCA+TGG 0.512975 7_1:+70797625 None:intergenic
GTTTCCTGAGGCGTGGCACT+CGG 0.515073 7_1:-70798734 Msa1035060:three_prime_UTR
GCATGTTGTTATTATGGAAG+GGG 0.516659 7_1:-70798314 Msa1035060:three_prime_UTR
ACCCTCAAATACCAAAGCTT+AGG 0.516986 7_1:+70798649 None:intergenic
GGTTCCTCCTGATAGTCCTC+TGG 0.518825 7_1:-70798851 Msa1035060:three_prime_UTR
TAATGCATCTTGGGCAGCAA+TGG 0.519377 7_1:+70797710 None:intergenic
GGTGGAATGAGCAGTATACT+TGG 0.519885 7_1:-70798003 Msa1035060:three_prime_UTR
CGGTGCAAAGCTATCGATGA+TGG 0.520044 7_1:+70798027 None:intergenic
CTGATGCTGGCTGTTTGGAT+GGG 0.522554 7_1:-70798775 Msa1035060:three_prime_UTR
AGAACTGATTGCATGCTTTG+AGG 0.524185 7_1:-70796930 Msa1035060:three_prime_UTR
TGTGGCTGCAGAACCGTTTG+AGG 0.525708 7_1:-70798476 Msa1035060:three_prime_UTR
TTGAACCATCTAGTGTTCAC+AGG 0.525843 7_1:+70798346 None:intergenic
ATGAAATCAAATAATGGGAG+GGG 0.526239 7_1:-70798106 Msa1035060:three_prime_UTR
CCTTATGTTGAAGTCAAGCT+TGG 0.526765 7_1:-70799057 Msa1035060:three_prime_UTR
CTGTACAGGGTGGTGGATGA+AGG 0.527039 7_1:+70800329 None:intergenic
TTGAGTGGATTAATTGCTGT+TGG 0.528890 7_1:-70797500 Msa1035060:three_prime_UTR
GGAAGCTTGTGACGAAACCT+TGG 0.530590 7_1:+70796990 None:intergenic
GCCAAGGCACCCACCTCACA+TGG 0.530781 7_1:-70797324 Msa1035060:three_prime_UTR
GATTCAGGCTTCGGTTCTTG+AGG 0.530948 7_1:-70798953 Msa1035060:three_prime_UTR
GGTTAATGTGATCGAGGCAC+AGG 0.532299 7_1:-70798629 Msa1035060:three_prime_UTR
TTCCCTTACAGATGATGGAC+CGG 0.532408 7_1:-70798384 Msa1035060:three_prime_UTR
AGCATGCAATCAGTTCTTGC+AGG 0.532832 7_1:+70796936 None:intergenic
TCTTTATGTTAGGGTTGTGA+AGG 0.534597 7_1:-70799121 Msa1035060:three_prime_UTR
GAATCAGAACTGTTGTGATA+GGG 0.535162 7_1:+70797444 None:intergenic
ATCTAGTTCGTCAGGGTGTG+CGG 0.535646 7_1:+70797277 None:intergenic
TGGACCTCTGTTGCTGTACA+GGG 0.536495 7_1:+70800316 None:intergenic
CACCATGGTGGTGATAAGCC+TGG 0.536704 7_1:-70797923 Msa1035060:three_prime_UTR
AGGAAATCAAGTTTGCAAGC+AGG 0.537088 7_1:-70798282 Msa1035060:three_prime_UTR
ACTACCTCCTTTCTCAGTGG+TGG 0.538932 7_1:+70797602 None:intergenic
CAGGGTGGTGGATGAAGGAA+TGG 0.540782 7_1:+70800334 None:intergenic
GGTAGGATACAAACTGTTGT+CGG 0.541500 7_1:-70797176 Msa1035060:three_prime_UTR
ACCACTGAGAAAGGAGGTAG+TGG 0.541617 7_1:-70797600 Msa1035060:three_prime_UTR
AGCATGTTGTTATTATGGAA+GGG 0.541928 7_1:-70798315 Msa1035060:three_prime_UTR
GGACTAGAATCTCTCAGAGC+AGG 0.546735 7_1:-70798534 Msa1035060:three_prime_UTR
GATGCCTCAGACTGTCGAGC+TGG 0.550117 7_1:+70797666 None:intergenic
TCTCAATGAGATTCCGAAGA+GGG 0.552069 7_1:-70798872 Msa1035060:three_prime_UTR
AGAGTGAAAATCGGATCTGA+AGG 0.552134 7_1:-70799615 Msa1035060:CDS
AGTGGTATAGATTGGAGGAT+AGG 0.552452 7_1:-70798822 Msa1035060:three_prime_UTR
TAGCCTTCACATAAACCTCC+GGG 0.554227 7_1:+70798578 None:intergenic
TGCAAGCAGGATTCATATGA+GGG 0.556261 7_1:-70798269 Msa1035060:three_prime_UTR
CGCATCCTCACGATGTCAGA+AGG 0.560574 7_1:+70797224 None:intergenic
AGACGTGTGTCCATGTGAGG+TGG 0.561408 7_1:+70797314 None:intergenic
CTGAGAGATTCTAGTCCTCA+AGG 0.563761 7_1:+70798540 None:intergenic
GAGACCAAACCCCACCTTGG+TGG 0.564488 7_1:-70799201 Msa1035060:three_prime_UTR
GTGGCACTCGGATGCGGCGA+CGG 0.568143 7_1:-70798722 Msa1035060:three_prime_UTR
GATTAATTGCTGTTGGAAAG+TGG 0.569868 7_1:-70797493 Msa1035060:three_prime_UTR
CAGTCTCGAGTGTGGAAAGA+CGG 0.571907 7_1:+70797864 None:intergenic
CAGGGTGTGCGGAATCAGCA+TGG 0.574507 7_1:+70797288 None:intergenic
GACAACAGTTTGTATCCTAC+CGG 0.574843 7_1:+70797178 None:intergenic
TGTTAGGGTTGTGAAGGCCA+AGG 0.575221 7_1:-70799115 Msa1035060:three_prime_UTR
ATGTCAGAAGGTCTTGTGGT+TGG 0.576119 7_1:+70797236 None:intergenic
ATAGTCCTCTGGCGCCGCAG+TGG 0.576174 7_1:-70798840 Msa1035060:three_prime_UTR
ATGAAGAACTAGAAGCGGAT+AGG 0.578613 7_1:+70797823 None:intergenic
GGATTTCACACGTATGAAGT+GGG 0.579769 7_1:-70800365 None:intergenic
TTCAACAGAAAATCTTCTGG+AGG 0.580397 7_1:+70799225 None:intergenic
CTATACCACTGCGGCGCCAG+AGG 0.580494 7_1:+70798835 None:intergenic
CCTAACAAAGAGGAACTGCT+AGG 0.581474 7_1:-70798418 Msa1035060:three_prime_UTR
TTCTTCGCATACTCCACATG+TGG 0.584507 7_1:+70797555 None:intergenic
AGAGACCTTACCACCAAGGT+GGG 0.585249 7_1:+70799191 None:intergenic
GGGAATCTTCCCTTATCAGA+CGG 0.587236 7_1:+70798598 None:intergenic
TATCAATCCGATGTGGAATG+AGG 0.587518 7_1:-70798509 Msa1035060:three_prime_UTR
CACGATGTCAGAAGGTCTTG+TGG 0.588138 7_1:+70797232 None:intergenic
TTGTTGGTAAGATAAGTTCA+GGG 0.591225 7_1:+70797393 None:intergenic
AGGATTTCACACGTATGAAG+TGG 0.592149 7_1:-70800366 None:intergenic
GCCGCAGTGGTATAGATTGG+AGG 0.592270 7_1:-70798827 Msa1035060:three_prime_UTR
GATTCATCAGATCCTATCAA+AGG 0.594820 7_1:-70800238 Msa1035060:CDS
GCCCAACGGCGAAACAGCTG+TGG 0.595415 7_1:-70798186 Msa1035060:three_prime_UTR
GTCAAGCTTGGTAATTACAA+AGG 0.597001 7_1:-70799045 Msa1035060:three_prime_UTR
TGAAATCAAATAATGGGAGG+GGG 0.602820 7_1:-70798105 Msa1035060:three_prime_UTR
ATTCCCGGAGGTTTATGTGA+AGG 0.604425 7_1:-70798581 Msa1035060:three_prime_UTR
TCCACTACCTCCTTTCTCAG+TGG 0.604548 7_1:+70797599 None:intergenic
CTTCCAGTAACATCTTTCGC+AGG 0.611302 7_1:+70799087 None:intergenic
AGCTGATGAAGCGTTTCCTG+AGG 0.615613 7_1:-70798746 Msa1035060:three_prime_UTR
CAGTAGTGATCTTCGCCCAA+CGG 0.615629 7_1:-70798200 Msa1035060:three_prime_UTR
AGGGTGTGCGGAATCAGCAT+GGG 0.615690 7_1:+70797289 None:intergenic
CCAATTGTAATGACAGTGCA+CGG 0.615694 7_1:+70797968 None:intergenic
TCAGCCAGCTCGACAGTCTG+AGG 0.617012 7_1:-70797670 Msa1035060:three_prime_UTR
ATGAAGCGTTTCCTGAGGCG+TGG 0.618045 7_1:-70798741 Msa1035060:three_prime_UTR
TTCTCAGTGGTGGCTCAGCA+CGG 0.618075 7_1:+70797612 None:intergenic
GACTCGATCAGTCTCGAGTG+TGG 0.619232 7_1:+70797856 None:intergenic
CTCCGGTCCATCATCTGTAA+GGG 0.619971 7_1:+70798382 None:intergenic
TCGATAGCTTTGCACCGAGG+TGG 0.623002 7_1:-70798021 Msa1035060:three_prime_UTR
GACGTGTGTCCATGTGAGGT+GGG 0.624040 7_1:+70797315 None:intergenic
AAAGAGACCAAACCCCACCT+TGG 0.627049 7_1:-70799204 Msa1035060:three_prime_UTR
GAGTTTGGTACTATAGATGG+AGG 0.627109 7_1:-70797346 Msa1035060:three_prime_UTR
GTGGAATGAGCAGTATACTT+GGG 0.627653 7_1:-70798002 Msa1035060:three_prime_UTR
GTGGAATATATGCTGGATGT+CGG 0.627998 7_1:-70797581 Msa1035060:three_prime_UTR
CTAACAAAGAGGAACTGCTA+GGG 0.630417 7_1:-70798417 Msa1035060:three_prime_UTR
TCTTGCAAATATTAGGTCGA+AGG 0.630876 7_1:-70798683 Msa1035060:three_prime_UTR
GGTACTATAGATGGAGGCCA+AGG 0.630984 7_1:-70797340 Msa1035060:three_prime_UTR
CTTTGCTACACAGTAAGCAT+CGG 0.631955 7_1:+70798078 None:intergenic
CGATGAAATCAAATAATGGG+AGG 0.632153 7_1:-70798108 Msa1035060:three_prime_UTR
GATCGTCTGAGAAGTATCGC+CGG 0.633165 7_1:-70797197 Msa1035060:three_prime_UTR
GATACTGCATTTGCTCAACA+AGG 0.633581 7_1:+70799142 None:intergenic
TTTGAAACAACAAGATGCAG+AGG 0.633933 7_1:-70799251 Msa1035060:exon
CTCCAGGCTTATCACCACCA+TGG 0.635088 7_1:+70797921 None:intergenic
ATCAAATCCTCATTCCACAT+CGG 0.635499 7_1:+70798502 None:intergenic
ACTCTTCATCTAGTTCGTCA+GGG 0.644466 7_1:+70797270 None:intergenic
GATGAAATCAAATAATGGGA+GGG 0.644856 7_1:-70798107 Msa1035060:three_prime_UTR
GAATGAGCAGTATACTTGGG+AGG 0.645094 7_1:-70797999 Msa1035060:three_prime_UTR
TCCTCCACACTCAAAATCAG+TGG 0.646052 7_1:+70798451 None:intergenic
CAGAGACCTTACCACCAAGG+TGG 0.649836 7_1:+70799190 None:intergenic
TAGGATACAAACTGTTGTCG+GGG 0.649861 7_1:-70797174 Msa1035060:three_prime_UTR
TTTGAGGGTTAATGTGATCG+AGG 0.650146 7_1:-70798635 Msa1035060:three_prime_UTR
ACCACCCTGTACAGCAACAG+AGG 0.650238 7_1:-70800320 Msa1035060:CDS
ATGAGGGTCTGTCTAGAAGG+TGG 0.652057 7_1:-70798253 Msa1035060:three_prime_UTR
AACCTCCTGAAGAAATTGAG+TGG 0.658154 7_1:+70796960 None:intergenic
TAGGGTTGCGCCTAACAAAG+AGG 0.658831 7_1:-70798428 Msa1035060:three_prime_UTR
CAAGACCTTCTGACATCGTG+AGG 0.659186 7_1:-70797229 Msa1035060:three_prime_UTR
TGGATGTCGGTTCCCACATG+TGG 0.659218 7_1:-70797568 Msa1035060:three_prime_UTR
CTTCTTCTCGAAATGCCTCG+TGG 0.659513 7_1:+70799020 None:intergenic
GTTGGATGAAGAACTAGAAG+CGG 0.659701 7_1:+70797818 None:intergenic
TTTATGTGTTGAGACATCCA+AGG 0.671355 7_1:-70797007 Msa1035060:three_prime_UTR
CTCCAGAGACCTTACCACCA+AGG 0.672025 7_1:+70799187 None:intergenic
TCTAGTTCTTCATCCAACTG+GGG 0.674320 7_1:-70797813 Msa1035060:three_prime_UTR
GCAGGAGTATCAATCCGATG+TGG 0.681926 7_1:-70798516 Msa1035060:three_prime_UTR
GATAACTGTCACTTGCACCA+TGG 0.683890 7_1:-70797938 Msa1035060:three_prime_UTR
ATCTCAATGAGATTCCGAAG+AGG 0.685604 7_1:-70798873 Msa1035060:three_prime_UTR
ACCTCTGTTGCTGTACAGGG+TGG 0.687752 7_1:+70800319 None:intergenic
GAGACCTTACCACCAAGGTG+GGG 0.689512 7_1:+70799192 None:intergenic
GAGAGACGTGTGTCCATGTG+AGG 0.692622 7_1:+70797311 None:intergenic
TCTTCGCATACTCCACATGT+GGG 0.694693 7_1:+70797556 None:intergenic
GTCTGAGAAGTATCGCCGGT+AGG 0.699160 7_1:-70797193 Msa1035060:three_prime_UTR
GGCGCCAGAGGACTATCAGG+AGG 0.702158 7_1:+70798847 None:intergenic
TGAGCCACCACTGAGAAAGG+AGG 0.712947 7_1:-70797606 Msa1035060:three_prime_UTR
GATTTCACACGTATGAAGTG+GGG 0.713862 7_1:-70800364 None:intergenic
GTATACTGCTCATTCCACCT+CGG 0.723662 7_1:+70798007 None:intergenic
AACTGTCACTTGCACCATGG+TGG 0.724351 7_1:-70797935 Msa1035060:three_prime_UTR
TCATCGATAGCTTTGCACCG+AGG 0.746528 7_1:-70798024 Msa1035060:three_prime_UTR
CATGGTGGTGATAAGCCTGG+AGG 0.753318 7_1:-70797920 Msa1035060:three_prime_UTR
TCCTCCAATCTATACCACTG+CGG 0.756616 7_1:+70798826 None:intergenic
TGATAAGGGAAGATTCCCGG+AGG 0.760486 7_1:-70798593 Msa1035060:three_prime_UTR
GTAATTACAAAGGAACCACG+AGG 0.808607 7_1:-70799035 Msa1035060:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTAATTAATTAATTTATTA+AGG - chr7_1:70797473-70797492 Msa1035060:three_prime_UTR 0.0%
!!! TTATTTAAGTACATTTTTTT+TGG - chr7_1:70797068-70797087 Msa1035060:three_prime_UTR 10.0%
!!! TATTTAAGTACATTTTTTTT+GGG - chr7_1:70797069-70797088 Msa1035060:three_prime_UTR 10.0%
!!! TTAAAATTTGTAATTTTGTA+GGG - chr7_1:70800287-70800306 Msa1035060:CDS 10.0%
!! TAAAAATAAAAGTAGAAACT+AGG + chr7_1:70797051-70797070 None:intergenic 15.0%
!! AAAAAGTAAATCAAAGTTTA+AGG - chr7_1:70797244-70797263 Msa1035060:three_prime_UTR 15.0%
!!! TATTTATATTTTCGAACTTA+TGG - chr7_1:70800255-70800274 Msa1035060:CDS 15.0%
!!! CAAAATTACAAATTTTAACA+AGG + chr7_1:70800285-70800304 None:intergenic 15.0%
!!! GTTAAAATTTGTAATTTTGT+AGG - chr7_1:70800286-70800305 Msa1035060:CDS 15.0%
!!! AGCTTTGAAGAAAAAAATAT+TGG - chr7_1:70797172-70797191 Msa1035060:three_prime_UTR 20.0%
!!! GCTTTGAAGAAAAAAATATT+GGG - chr7_1:70797173-70797192 Msa1035060:three_prime_UTR 20.0%
!!! CTTTGAAGAAAAAAATATTG+GGG - chr7_1:70797174-70797193 Msa1035060:three_prime_UTR 20.0%
!!! AAGTTTTTTTCCGAATATTA+AGG - chr7_1:70797609-70797628 Msa1035060:three_prime_UTR 20.0%
!!! TAGTTTACTTTTCCTTTGAT+AGG + chr7_1:70796819-70796838 None:intergenic 25.0%
!! GCTTTTCATTTTCATGATTT+GGG - chr7_1:70797010-70797029 Msa1035060:three_prime_UTR 25.0%
! ACTAGAAAAAGAATGTTTGA+GGG + chr7_1:70797332-70797351 None:intergenic 25.0%
! AACTAGAAAAAGAATGTTTG+AGG + chr7_1:70797333-70797352 None:intergenic 25.0%
! ATACACAAACTAAGAAGATA+AGG + chr7_1:70797585-70797604 None:intergenic 25.0%
! AATCGAGTAACCTTAATATT+CGG + chr7_1:70797622-70797641 None:intergenic 25.0%
! TTAAAAAATGAACTGTTCCA+AGG + chr7_1:70797693-70797712 None:intergenic 25.0%
!!! GATTTTTTTTTCTTCACTAG+TGG + chr7_1:70797742-70797761 None:intergenic 25.0%
! AAATGCAGTATCTTTATGTT+AGG - chr7_1:70797911-70797930 Msa1035060:three_prime_UTR 25.0%
! AATGCAGTATCTTTATGTTA+GGG - chr7_1:70797912-70797931 Msa1035060:three_prime_UTR 25.0%
!! TTTGTGAAGGATGATTTTAT+CGG - chr7_1:70798132-70798151 Msa1035060:three_prime_UTR 25.0%
!! TGAAAAGCATGTTGTTATTA+TGG - chr7_1:70798722-70798741 Msa1035060:three_prime_UTR 25.0%
! AACTAAAAATCCACAAAATC+TGG + chr7_1:70800218-70800237 None:intergenic 25.0%
TATTGCAAAAAGGCAAAGTA+GGG - chr7_1:70796758-70796777 Msa1035060:three_prime_UTR 30.0%
!! AAATGGGTTTGTTCTGAAAT+GGG + chr7_1:70796919-70796938 None:intergenic 30.0%
!! AAAATGGGTTTGTTCTGAAA+TGG + chr7_1:70796920-70796939 None:intergenic 30.0%
!! TAAAATGTGAAGAAGTACCT+TGG + chr7_1:70796945-70796964 None:intergenic 30.0%
! CGCTTTTCATTTTCATGATT+TGG - chr7_1:70797009-70797028 Msa1035060:three_prime_UTR 30.0%
AAAAAATATTGGGGTGTGTT+TGG - chr7_1:70797183-70797202 Msa1035060:three_prime_UTR 30.0%
TGTTCTTAGAGAGTGAAAAT+CGG - chr7_1:70797418-70797437 Msa1035060:three_prime_UTR 30.0%
! TTTCAAGTAAAGTAAGCTCT+TGG - chr7_1:70797450-70797469 Msa1035060:three_prime_UTR 30.0%
TGCAATTAATGCATATCTAG+TGG + chr7_1:70797547-70797566 None:intergenic 30.0%
! ACTGTGTTTTCCTCTTTTTT+AGG - chr7_1:70797665-70797684 Msa1035060:three_prime_UTR 30.0%
!!! TTTTTTTCTTCACTAGTGGT+AGG + chr7_1:70797738-70797757 None:intergenic 30.0%
TCTTTCAACAGAAAATCTTC+TGG + chr7_1:70797823-70797842 None:intergenic 30.0%
!!! TTTTTGCTTTTTCGAAGGAT+CGG - chr7_1:70798067-70798086 Msa1035060:three_prime_UTR 30.0%
! TGAGGTTTTTGTGAAAGATA+AGG - chr7_1:70798107-70798126 Msa1035060:three_prime_UTR 30.0%
! GAAAGATAAGGATTTTGTGA+AGG - chr7_1:70798119-70798138 Msa1035060:three_prime_UTR 30.0%
!! GTTTATGTGAAGGCTATTTT+GGG - chr7_1:70798471-70798490 Msa1035060:three_prime_UTR 30.0%
! AAGCATGTTGTTATTATGGA+AGG - chr7_1:70798726-70798745 Msa1035060:three_prime_UTR 30.0%
! AGCATGTTGTTATTATGGAA+GGG - chr7_1:70798727-70798746 Msa1035060:three_prime_UTR 30.0%
ATGCCGATGAAATCAAATAA+TGG - chr7_1:70798930-70798949 Msa1035060:three_prime_UTR 30.0%
TGCCGATGAAATCAAATAAT+GGG - chr7_1:70798931-70798950 Msa1035060:three_prime_UTR 30.0%
! CTCCCATTATTTGATTTCAT+CGG + chr7_1:70798936-70798955 None:intergenic 30.0%
! GATGAAATCAAATAATGGGA+GGG - chr7_1:70798935-70798954 Msa1035060:three_prime_UTR 30.0%
! ATGAAATCAAATAATGGGAG+GGG - chr7_1:70798936-70798955 Msa1035060:three_prime_UTR 30.0%
GGACAAAGAGATTCAAAAAT+CGG - chr7_1:70799143-70799162 Msa1035060:three_prime_UTR 30.0%
!!! AGCCAATTTTTTCAGAATCA+TGG - chr7_1:70799514-70799533 Msa1035060:intron 30.0%
!!! GCCAATTTTTTCAGAATCAT+GGG - chr7_1:70799515-70799534 Msa1035060:intron 30.0%
!!! CCAATTTTTTCAGAATCATG+GGG - chr7_1:70799516-70799535 Msa1035060:intron 30.0%
!!! CAATTTTTTCAGAATCATGG+GGG - chr7_1:70799517-70799536 Msa1035060:intron 30.0%
! TTGTTGGTAAGATAAGTTCA+GGG + chr7_1:70799652-70799671 None:intergenic 30.0%
! ATTGTTGGTAAGATAAGTTC+AGG + chr7_1:70799653-70799672 None:intergenic 30.0%
AAGAGGTAAAGGAAAATTGT+TGG + chr7_1:70799668-70799687 None:intergenic 30.0%
! TTCCTTTACCTCTTTTTGAT+TGG - chr7_1:70799674-70799693 Msa1035060:intron 30.0%
AAAAATCCACAAAATCTGGT+GGG + chr7_1:70800214-70800233 None:intergenic 30.0%
TAAAAATCCACAAAATCTGG+TGG + chr7_1:70800215-70800234 None:intergenic 30.0%
!! TTTTTGCAATAGTGTTGGAC+TGG + chr7_1:70796749-70796768 None:intergenic 35.0%
AGTCCAACACTATTGCAAAA+AGG - chr7_1:70796748-70796767 Msa1035060:three_prime_UTR 35.0%
! TTGCCTTTTTGCAATAGTGT+TGG + chr7_1:70796754-70796773 None:intergenic 35.0%
CTATTGCAAAAAGGCAAAGT+AGG - chr7_1:70796757-70796776 Msa1035060:three_prime_UTR 35.0%
GATTCATCAGATCCTATCAA+AGG - chr7_1:70796804-70796823 Msa1035060:three_prime_UTR 35.0%
AGAGGATTGAGAAGAAAAAG+GGG + chr7_1:70796862-70796881 None:intergenic 35.0%
GAGAGGATTGAGAAGAAAAA+GGG + chr7_1:70796863-70796882 None:intergenic 35.0%
AGAAGAAGAAGAAGTAGCAA+TGG + chr7_1:70796885-70796904 None:intergenic 35.0%
!! AGAAGTACCTTGGAGAAAAT+GGG + chr7_1:70796935-70796954 None:intergenic 35.0%
!! AAGAAGTACCTTGGAGAAAA+TGG + chr7_1:70796936-70796955 None:intergenic 35.0%
! AATGCAGAAAGCATGAAACT+TGG - chr7_1:70797276-70797295 Msa1035060:three_prime_UTR 35.0%
CTCTCATATTATCGAGAATG+TGG + chr7_1:70797510-70797529 None:intergenic 35.0%
! TTTGAAACAACAAGATGCAG+AGG - chr7_1:70797791-70797810 Msa1035060:three_prime_UTR 35.0%
TTCAACAGAAAATCTTCTGG+AGG + chr7_1:70797820-70797839 None:intergenic 35.0%
TCTTTATGTTAGGGTTGTGA+AGG - chr7_1:70797921-70797940 Msa1035060:three_prime_UTR 35.0%
CAAGCTTGACTTCAACATAA+GGG + chr7_1:70797987-70798006 None:intergenic 35.0%
! GTCAAGCTTGGTAATTACAA+AGG - chr7_1:70797997-70798016 Msa1035060:three_prime_UTR 35.0%
AGAAGAAGACTAATCCTGAA+TGG - chr7_1:70798037-70798056 Msa1035060:three_prime_UTR 35.0%
!!! TCAGGTTTTTGCTTTTTCGA+AGG - chr7_1:70798062-70798081 Msa1035060:three_prime_UTR 35.0%
! ATGATTTTATCGGTCGTGTT+TGG - chr7_1:70798142-70798161 Msa1035060:three_prime_UTR 35.0%
CTGATGCTCTTGCAAATATT+AGG - chr7_1:70798352-70798371 Msa1035060:three_prime_UTR 35.0%
TCTTGCAAATATTAGGTCGA+AGG - chr7_1:70798359-70798378 Msa1035060:three_prime_UTR 35.0%
TGTATCTATCTCCTAAGCTT+TGG - chr7_1:70798382-70798401 Msa1035060:three_prime_UTR 35.0%
! TCCTAAGCTTTGGTATTTGA+GGG - chr7_1:70798392-70798411 Msa1035060:three_prime_UTR 35.0%
! GGTTTATGTGAAGGCTATTT+TGG - chr7_1:70798470-70798489 Msa1035060:three_prime_UTR 35.0%
ATCAAATCCTCATTCCACAT+CGG + chr7_1:70798543-70798562 None:intergenic 35.0%
GAATGAGGATTTGATGTTTG+TGG - chr7_1:70798548-70798567 Msa1035060:three_prime_UTR 35.0%
TGTTATTCCCTTACAGATGA+TGG - chr7_1:70798653-70798672 Msa1035060:three_prime_UTR 35.0%
! GCATGTTGTTATTATGGAAG+GGG - chr7_1:70798728-70798747 Msa1035060:three_prime_UTR 35.0%
! AGAAGGTGGTTATCATGTTT+TGG - chr7_1:70798803-70798822 Msa1035060:three_prime_UTR 35.0%
!!! AGTATTGGAGTTTTGGAAGT+GGG - chr7_1:70798885-70798904 Msa1035060:three_prime_UTR 35.0%
! CGATGAAATCAAATAATGGG+AGG - chr7_1:70798934-70798953 Msa1035060:three_prime_UTR 35.0%
! TGAAATCAAATAATGGGAGG+GGG - chr7_1:70798937-70798956 Msa1035060:three_prime_UTR 35.0%
TAGCAAAGTATGGACAGAAA+TGG - chr7_1:70798979-70798998 Msa1035060:three_prime_UTR 35.0%
AGCAAAGTATGGACAGAAAT+GGG - chr7_1:70798980-70798999 Msa1035060:three_prime_UTR 35.0%
!! TTCTAGTTCTTCATCCAACT+GGG - chr7_1:70799228-70799247 Msa1035060:three_prime_UTR 35.0%
GAAAATGGGAGAAATTCAAC+TGG - chr7_1:70799256-70799275 Msa1035060:exon 35.0%
GGATGAATGTAATGCATCTT+GGG + chr7_1:70799344-70799363 None:intergenic 35.0%
TGGATGAATGTAATGCATCT+TGG + chr7_1:70799345-70799364 None:intergenic 35.0%
! CCCCATGATTCTGAAAAAAT+TGG + chr7_1:70799519-70799538 None:intergenic 35.0%
!! TTGAGTGGATTAATTGCTGT+TGG - chr7_1:70799542-70799561 Msa1035060:intron 35.0%
! GATTAATTGCTGTTGGAAAG+TGG - chr7_1:70799549-70799568 Msa1035060:intron 35.0%
! GGTTTTTCCAATTGCAGATT+TGG + chr7_1:70799580-70799599 None:intergenic 35.0%
GAATCAGAACTGTTGTGATA+GGG + chr7_1:70799601-70799620 None:intergenic 35.0%
TGAATCAGAACTGTTGTGAT+AGG + chr7_1:70799602-70799621 None:intergenic 35.0%
CTCCAATCAAAAAGAGGTAA+AGG + chr7_1:70799679-70799698 None:intergenic 35.0%
!! ACCTCTTTTTGATTGGAGTT+TGG - chr7_1:70799681-70799700 Msa1035060:intron 35.0%
ACCAAACTCCAATCAAAAAG+AGG + chr7_1:70799685-70799704 None:intergenic 35.0%
TTGGAGTTTGGTACTATAGA+TGG - chr7_1:70799693-70799712 Msa1035060:intron 35.0%
TTTATGTGTTGAGACATCCA+AGG - chr7_1:70800035-70800054 Msa1035060:intron 35.0%
AATGTGCAGAAAAACACAAG+TGG - chr7_1:70800158-70800177 Msa1035060:intron 35.0%
! AAAAACACAAGTGGAGCTTT+TGG - chr7_1:70800167-70800186 Msa1035060:intron 35.0%
! AGAAGAAAAAGGGGTGTAGA+AGG + chr7_1:70796853-70796872 None:intergenic 40.0%
GGAGAGGATTGAGAAGAAAA+AGG + chr7_1:70796864-70796883 None:intergenic 40.0%
AAGAAGAAGTAGCAATGGAG+AGG + chr7_1:70796880-70796899 None:intergenic 40.0%
!! GGTTTGTTCTGAAATGGGAA+TGG + chr7_1:70796914-70796933 None:intergenic 40.0%
! GAACAAACCCATTTTCTCCA+AGG - chr7_1:70796925-70796944 Msa1035060:three_prime_UTR 40.0%
AGAGTGAAAATCGGATCTGA+AGG - chr7_1:70797427-70797446 Msa1035060:three_prime_UTR 40.0%
!! CTCGATTTGCTACACTGTAA+CGG - chr7_1:70797635-70797654 Msa1035060:three_prime_UTR 40.0%
!!! TTCCTCTTTTTTAGGCTCCT+TGG - chr7_1:70797673-70797692 Msa1035060:three_prime_UTR 40.0%
TTCCAAGGAGCCTAAAAAAG+AGG + chr7_1:70797678-70797697 None:intergenic 40.0%
! AACAGAAAATCTTCTGGAGG+AGG + chr7_1:70797817-70797836 None:intergenic 40.0%
CATTTGCTCAACAAGGTCAT+AGG + chr7_1:70797896-70797915 None:intergenic 40.0%
GATACTGCATTTGCTCAACA+AGG + chr7_1:70797903-70797922 None:intergenic 40.0%
CCAAGCTTGACTTCAACATA+AGG + chr7_1:70797988-70798007 None:intergenic 40.0%
CCTTATGTTGAAGTCAAGCT+TGG - chr7_1:70797985-70798004 Msa1035060:three_prime_UTR 40.0%
GTAATTACAAAGGAACCACG+AGG - chr7_1:70798007-70798026 Msa1035060:three_prime_UTR 40.0%
GACTAATCCTGAATGGAATC+AGG - chr7_1:70798044-70798063 Msa1035060:three_prime_UTR 40.0%
GCAAAAACCTGATTCCATTC+AGG + chr7_1:70798054-70798073 None:intergenic 40.0%
!! TTTTTCGAAGGATCGGATTC+AGG - chr7_1:70798074-70798093 Msa1035060:three_prime_UTR 40.0%
ATCTCAATGAGATTCCGAAG+AGG - chr7_1:70798169-70798188 Msa1035060:three_prime_UTR 40.0%
TCTCAATGAGATTCCGAAGA+GGG - chr7_1:70798170-70798189 Msa1035060:three_prime_UTR 40.0%
AGTGGTATAGATTGGAGGAT+AGG - chr7_1:70798220-70798239 Msa1035060:three_prime_UTR 40.0%
! CTCCTAAGCTTTGGTATTTG+AGG - chr7_1:70798391-70798410 Msa1035060:three_prime_UTR 40.0%
ACCCTCAAATACCAAAGCTT+AGG + chr7_1:70798396-70798415 None:intergenic 40.0%
TTTGAGGGTTAATGTGATCG+AGG - chr7_1:70798407-70798426 Msa1035060:three_prime_UTR 40.0%
ATAGCCTTCACATAAACCTC+CGG + chr7_1:70798468-70798487 None:intergenic 40.0%
!! TTTTGGGAAATCAGACCTTG+AGG - chr7_1:70798487-70798506 Msa1035060:three_prime_UTR 40.0%
TATCAATCCGATGTGGAATG+AGG - chr7_1:70798533-70798552 Msa1035060:three_prime_UTR 40.0%
AAAATCAGTGGCTCCTCAAA+CGG + chr7_1:70798582-70798601 None:intergenic 40.0%
!! TGATTTTGAGTGTGGAGGAT+AGG - chr7_1:70798595-70798614 Msa1035060:three_prime_UTR 40.0%
!! GATTTTGAGTGTGGAGGATA+GGG - chr7_1:70798596-70798615 Msa1035060:three_prime_UTR 40.0%
CTAACAAAGAGGAACTGCTA+GGG - chr7_1:70798625-70798644 Msa1035060:three_prime_UTR 40.0%
ACAAACCTGTGAACACTAGA+TGG - chr7_1:70798691-70798710 Msa1035060:three_prime_UTR 40.0%
TTGAACCATCTAGTGTTCAC+AGG + chr7_1:70798699-70798718 None:intergenic 40.0%
AGGAAATCAAGTTTGCAAGC+AGG - chr7_1:70798760-70798779 Msa1035060:three_prime_UTR 40.0%
TTGCAAGCAGGATTCATATG+AGG - chr7_1:70798772-70798791 Msa1035060:three_prime_UTR 40.0%
TGCAAGCAGGATTCATATGA+GGG - chr7_1:70798773-70798792 Msa1035060:three_prime_UTR 40.0%
!!! GAAGTCGAGTATTGGAGTTT+TGG - chr7_1:70798878-70798897 Msa1035060:three_prime_UTR 40.0%
!!! GAGTATTGGAGTTTTGGAAG+TGG - chr7_1:70798884-70798903 Msa1035060:three_prime_UTR 40.0%
!!! GTATTGGAGTTTTGGAAGTG+GGG - chr7_1:70798886-70798905 Msa1035060:three_prime_UTR 40.0%
AGTGGGGATATTGAATGCTT+CGG - chr7_1:70798902-70798921 Msa1035060:three_prime_UTR 40.0%
CTTTGCTACACAGTAAGCAT+CGG + chr7_1:70798967-70798986 None:intergenic 40.0%
GCTTACTGTGTAGCAAAGTA+TGG - chr7_1:70798969-70798988 Msa1035060:three_prime_UTR 40.0%
GTGGAATGAGCAGTATACTT+GGG - chr7_1:70799040-70799059 Msa1035060:three_prime_UTR 40.0%
CCAATTGTAATGACAGTGCA+CGG + chr7_1:70799077-70799096 None:intergenic 40.0%
TTTGAATCTCTTTGTCCTCC+AGG + chr7_1:70799140-70799159 None:intergenic 40.0%
ATGAAGAACTAGAAGCGGAT+AGG + chr7_1:70799222-70799241 None:intergenic 40.0%
GTTGGATGAAGAACTAGAAG+CGG + chr7_1:70799227-70799246 None:intergenic 40.0%
!! CTTCTAGTTCTTCATCCAAC+TGG - chr7_1:70799227-70799246 Msa1035060:three_prime_UTR 40.0%
!! TCTAGTTCTTCATCCAACTG+GGG - chr7_1:70799229-70799248 Msa1035060:three_prime_UTR 40.0%
GAGAAATTCAACTGGCTGTA+AGG - chr7_1:70799264-70799283 Msa1035060:exon 40.0%
GTGGAATATATGCTGGATGT+CGG - chr7_1:70799461-70799480 Msa1035060:intron 40.0%
GGTTTGACCAAATCTGCAAT+TGG - chr7_1:70799570-70799589 Msa1035060:intron 40.0%
GAGTTTGGTACTATAGATGG+AGG - chr7_1:70799696-70799715 Msa1035060:intron 40.0%
! ACTCTTCATCTAGTTCGTCA+GGG + chr7_1:70799775-70799794 None:intergenic 40.0%
! AACTCTTCATCTAGTTCGTC+AGG + chr7_1:70799776-70799795 None:intergenic 40.0%
GACAACAGTTTGTATCCTAC+CGG + chr7_1:70799867-70799886 None:intergenic 40.0%
GGTAGGATACAAACTGTTGT+CGG - chr7_1:70799866-70799885 Msa1035060:intron 40.0%
GTAGGATACAAACTGTTGTC+GGG - chr7_1:70799867-70799886 Msa1035060:intron 40.0%
TAGGATACAAACTGTTGTCG+GGG - chr7_1:70799868-70799887 Msa1035060:intron 40.0%
! GAATAGCACAAAAAGTGCAG+TGG + chr7_1:70799951-70799970 None:intergenic 40.0%
!! TGTGACTCCATTTCAAGTTG+TGG - chr7_1:70799997-70800016 Msa1035060:intron 40.0%
AGAAGAGCCACAACTTGAAA+TGG + chr7_1:70800007-70800026 None:intergenic 40.0%
AAGAAATTGAGTGGCACAGA+AGG + chr7_1:70800076-70800095 None:intergenic 40.0%
AACCTCCTGAAGAAATTGAG+TGG + chr7_1:70800085-70800104 None:intergenic 40.0%
AGAACTGATTGCATGCTTTG+AGG - chr7_1:70800112-70800131 Msa1035060:intron 40.0%
!! TTGCATGCTTTGAGGAAAGT+TGG - chr7_1:70800120-70800139 Msa1035060:intron 40.0%
! AAAGTTGGACTTGCTTGGAT+TGG - chr7_1:70800135-70800154 Msa1035060:intron 40.0%
! TATTCACCCACCAGATTTTG+TGG - chr7_1:70800205-70800224 Msa1035060:intron 40.0%
AACGACATGCTGCATTCTGT+CGG - chr7_1:70797300-70797319 Msa1035060:three_prime_UTR 45.0%
CTACCTGCGAAAGATGTTAC+TGG - chr7_1:70797952-70797971 Msa1035060:three_prime_UTR 45.0%
CTTCCAGTAACATCTTTCGC+AGG + chr7_1:70797958-70797977 None:intergenic 45.0%
TCCTCCAATCTATACCACTG+CGG + chr7_1:70798219-70798238 None:intergenic 45.0%
GGAGGATAGGAAGAGTGATA+AGG - chr7_1:70798233-70798252 Msa1035060:three_prime_UTR 45.0%
AGGAAGAGTGATAAGGTGAG+AGG - chr7_1:70798240-70798259 Msa1035060:three_prime_UTR 45.0%
GGAAGAGTGATAAGGTGAGA+GGG - chr7_1:70798241-70798260 Msa1035060:three_prime_UTR 45.0%
GAAGAGTGATAAGGTGAGAG+GGG - chr7_1:70798242-70798261 Msa1035060:three_prime_UTR 45.0%
GACTTGCAACCGTCTGATAA+GGG - chr7_1:70798435-70798454 Msa1035060:three_prime_UTR 45.0%
GGGAATCTTCCCTTATCAGA+CGG + chr7_1:70798447-70798466 None:intergenic 45.0%
GTCTGATAAGGGAAGATTCC+CGG - chr7_1:70798446-70798465 Msa1035060:three_prime_UTR 45.0%
ATTCCCGGAGGTTTATGTGA+AGG - chr7_1:70798461-70798480 Msa1035060:three_prime_UTR 45.0%
TAGCCTTCACATAAACCTCC+GGG + chr7_1:70798467-70798486 None:intergenic 45.0%
CTGAGAGATTCTAGTCCTCA+AGG + chr7_1:70798505-70798524 None:intergenic 45.0%
TCCTCCACACTCAAAATCAG+TGG + chr7_1:70798594-70798613 None:intergenic 45.0%
CCTAGCAGTTCCTCTTTGTT+AGG + chr7_1:70798627-70798646 None:intergenic 45.0%
CCTAACAAAGAGGAACTGCT+AGG - chr7_1:70798624-70798643 Msa1035060:three_prime_UTR 45.0%
!! TTCCCTTACAGATGATGGAC+CGG - chr7_1:70798658-70798677 Msa1035060:three_prime_UTR 45.0%
TATGGAAGGGGACAAGAAGA+AGG - chr7_1:70798740-70798759 Msa1035060:three_prime_UTR 45.0%
CATATGAGGGTCTGTCTAGA+AGG - chr7_1:70798786-70798805 Msa1035060:three_prime_UTR 45.0%
GTGGGGATATTGAATGCTTC+GGG - chr7_1:70798903-70798922 Msa1035060:three_prime_UTR 45.0%
GTATACTGCTCATTCCACCT+CGG + chr7_1:70799038-70799057 None:intergenic 45.0%
GGTGGAATGAGCAGTATACT+TGG - chr7_1:70799039-70799058 Msa1035060:three_prime_UTR 45.0%
GAATGAGCAGTATACTTGGG+AGG - chr7_1:70799043-70799062 Msa1035060:three_prime_UTR 45.0%
CCGTGCACTGTCATTACAAT+TGG - chr7_1:70799074-70799093 Msa1035060:three_prime_UTR 45.0%
! GATAACTGTCACTTGCACCA+TGG - chr7_1:70799104-70799123 Msa1035060:three_prime_UTR 45.0%
TCCAACTGGGGTGAAGAAAA+TGG - chr7_1:70799241-70799260 Msa1035060:three_prime_UTR 45.0%
CCAACTGGGGTGAAGAAAAT+GGG - chr7_1:70799242-70799261 Msa1035060:three_prime_UTR 45.0%
TAATGCATCTTGGGCAGCAA+TGG + chr7_1:70799335-70799354 None:intergenic 45.0%
!! GGAGGTAGTGGAATATATGC+TGG - chr7_1:70799454-70799473 Msa1035060:intron 45.0%
TCTTCGCATACTCCACATGT+GGG + chr7_1:70799489-70799508 None:intergenic 45.0%
TTCTTCGCATACTCCACATG+TGG + chr7_1:70799490-70799509 None:intergenic 45.0%
!!! AGAATCATGGGGGTTTTGAG+TGG - chr7_1:70799527-70799546 Msa1035060:intron 45.0%
! ATGTCAGAAGGTCTTGTGGT+TGG + chr7_1:70799809-70799828 None:intergenic 45.0%
ACAAACTGTTGTCGGGGATT+TGG - chr7_1:70799874-70799893 Msa1035060:intron 45.0%
! ACAAAAAGTGCAGTGGCTCT+TGG + chr7_1:70799944-70799963 None:intergenic 45.0%
! CTGTGCCACTCAATTTCTTC+AGG - chr7_1:70800077-70800096 Msa1035060:intron 45.0%
TGCCACTCAATTTCTTCAGG+AGG - chr7_1:70800080-70800099 Msa1035060:intron 45.0%
AGCATGCAATCAGTTCTTGC+AGG + chr7_1:70800109-70800128 None:intergenic 45.0%
! TGAGGAAAGTTGGACTTGCT+TGG - chr7_1:70800130-70800149 Msa1035060:intron 45.0%
TGGACCTCTGTTGCTGTACA+GGG + chr7_1:70796729-70796748 None:intergenic 50.0%
AAAGAGACCAAACCCCACCT+TGG - chr7_1:70797838-70797857 Msa1035060:three_prime_UTR 50.0%
AGAGACCTTACCACCAAGGT+GGG + chr7_1:70797854-70797873 None:intergenic 50.0%
TGTTAGGGTTGTGAAGGCCA+AGG - chr7_1:70797927-70797946 Msa1035060:three_prime_UTR 50.0%
ATCTTTCGCAGGTAGCTCCT+TGG + chr7_1:70797947-70797966 None:intergenic 50.0%
CTTCTTCTCGAAATGCCTCG+TGG + chr7_1:70798025-70798044 None:intergenic 50.0%
GAAGGATCGGATTCAGGCTT+CGG - chr7_1:70798080-70798099 Msa1035060:three_prime_UTR 50.0%
GATTCAGGCTTCGGTTCTTG+AGG - chr7_1:70798089-70798108 Msa1035060:three_prime_UTR 50.0%
CTATCAGGAGGAACCCTCTT+CGG + chr7_1:70798186-70798205 None:intergenic 50.0%
! CTGATGCTGGCTGTTTGGAT+GGG - chr7_1:70798267-70798286 Msa1035060:three_prime_UTR 50.0%
! AGCTGATGAAGCGTTTCCTG+AGG - chr7_1:70798296-70798315 Msa1035060:three_prime_UTR 50.0%
GGTTAATGTGATCGAGGCAC+AGG - chr7_1:70798413-70798432 Msa1035060:three_prime_UTR 50.0%
GGACTTGCAACCGTCTGATA+AGG - chr7_1:70798434-70798453 Msa1035060:three_prime_UTR 50.0%
TGATAAGGGAAGATTCCCGG+AGG - chr7_1:70798449-70798468 Msa1035060:three_prime_UTR 50.0%
GGACTAGAATCTCTCAGAGC+AGG - chr7_1:70798508-70798527 Msa1035060:three_prime_UTR 50.0%
!! GCAGGAGTATCAATCCGATG+TGG - chr7_1:70798526-70798545 Msa1035060:three_prime_UTR 50.0%
!!! GGAGCCACTGATTTTGAGTG+TGG - chr7_1:70798587-70798606 Msa1035060:three_prime_UTR 50.0%
!!! GCCACTGATTTTGAGTGTGG+AGG - chr7_1:70798590-70798609 Msa1035060:three_prime_UTR 50.0%
TAGGGTTGCGCCTAACAAAG+AGG - chr7_1:70798614-70798633 Msa1035060:three_prime_UTR 50.0%
CTCCGGTCCATCATCTGTAA+GGG + chr7_1:70798663-70798682 None:intergenic 50.0%
TCTCCGGTCCATCATCTGTA+AGG + chr7_1:70798664-70798683 None:intergenic 50.0%
CAGGTTTGTGATCGAGTCTC+CGG + chr7_1:70798680-70798699 None:intergenic 50.0%
ATGAGGGTCTGTCTAGAAGG+TGG - chr7_1:70798789-70798808 Msa1035060:three_prime_UTR 50.0%
CAGTAGTGATCTTCGCCCAA+CGG - chr7_1:70798842-70798861 Msa1035060:three_prime_UTR 50.0%
CAGCTGTGGAAGTCGAGTAT+TGG - chr7_1:70798870-70798889 Msa1035060:three_prime_UTR 50.0%
CGGTGCAAAGCTATCGATGA+TGG + chr7_1:70799018-70799037 None:intergenic 50.0%
! TCATCGATAGCTTTGCACCG+AGG - chr7_1:70799018-70799037 Msa1035060:three_prime_UTR 50.0%
! AACTGTCACTTGCACCATGG+TGG - chr7_1:70799107-70799126 Msa1035060:three_prime_UTR 50.0%
CAGTCTCGAGTGTGGAAAGA+CGG + chr7_1:70799181-70799200 None:intergenic 50.0%
! CCCATTTTCTTCACCCCAGT+TGG + chr7_1:70799245-70799264 None:intergenic 50.0%
TCGAGCTGGCTGACTGTTAA+TGG + chr7_1:70799365-70799384 None:intergenic 50.0%
ACTACCTCCTTTCTCAGTGG+TGG + chr7_1:70799443-70799462 None:intergenic 50.0%
ACCACTGAGAAAGGAGGTAG+TGG - chr7_1:70799442-70799461 Msa1035060:intron 50.0%
TCCACTACCTCCTTTCTCAG+TGG + chr7_1:70799446-70799465 None:intergenic 50.0%
GGTACTATAGATGGAGGCCA+AGG - chr7_1:70799702-70799721 Msa1035060:intron 50.0%
! ATCTAGTTCGTCAGGGTGTG+CGG + chr7_1:70799768-70799787 None:intergenic 50.0%
CACGATGTCAGAAGGTCTTG+TGG + chr7_1:70799813-70799832 None:intergenic 50.0%
CAAGACCTTCTGACATCGTG+AGG - chr7_1:70799813-70799832 Msa1035060:intron 50.0%
!! GATCGTCTGAGAAGTATCGC+CGG - chr7_1:70799845-70799864 Msa1035060:intron 50.0%
CAAGTTGTGGCTCTTCTCAC+TGG - chr7_1:70800010-70800029 Msa1035060:intron 50.0%
GGAAGCTTGTGACGAAACCT+TGG + chr7_1:70800055-70800074 None:intergenic 50.0%
GGTGGATGAAGGAATGGCTC+TGG + chr7_1:70796705-70796724 None:intergenic 55.0%
!! CAGGGTGGTGGATGAAGGAA+TGG + chr7_1:70796711-70796730 None:intergenic 55.0%
!! CTGTACAGGGTGGTGGATGA+AGG + chr7_1:70796716-70796735 None:intergenic 55.0%
TCTGTTGCTGTACAGGGTGG+TGG + chr7_1:70796723-70796742 None:intergenic 55.0%
ACCACCCTGTACAGCAACAG+AGG - chr7_1:70796722-70796741 Msa1035060:three_prime_UTR 55.0%
ACCTCTGTTGCTGTACAGGG+TGG + chr7_1:70796726-70796745 None:intergenic 55.0%
CTGGACCTCTGTTGCTGTAC+AGG + chr7_1:70796730-70796749 None:intergenic 55.0%
CTTACCACCAAGGTGGGGTT+TGG + chr7_1:70797848-70797867 None:intergenic 55.0%
! CAAACCCCACCTTGGTGGTA+AGG - chr7_1:70797846-70797865 Msa1035060:three_prime_UTR 55.0%
GAGACCTTACCACCAAGGTG+GGG + chr7_1:70797853-70797872 None:intergenic 55.0%
CAGAGACCTTACCACCAAGG+TGG + chr7_1:70797855-70797874 None:intergenic 55.0%
! CACCTTGGTGGTAAGGTCTC+TGG - chr7_1:70797853-70797872 Msa1035060:three_prime_UTR 55.0%
CTCCAGAGACCTTACCACCA+AGG + chr7_1:70797858-70797877 None:intergenic 55.0%
GGTTCCTCCTGATAGTCCTC+TGG - chr7_1:70798191-70798210 Msa1035060:three_prime_UTR 55.0%
GCCGCAGTGGTATAGATTGG+AGG - chr7_1:70798215-70798234 Msa1035060:three_prime_UTR 55.0%
! GCTGATGCTGGCTGTTTGGA+TGG - chr7_1:70798266-70798285 Msa1035060:three_prime_UTR 55.0%
! ATGAAGCGTTTCCTGAGGCG+TGG - chr7_1:70798301-70798320 Msa1035060:three_prime_UTR 55.0%
TGTGGCTGCAGAACCGTTTG+AGG - chr7_1:70798566-70798585 Msa1035060:three_prime_UTR 55.0%
! TCCACAGCTGTTTCGCCGTT+GGG + chr7_1:70798860-70798879 None:intergenic 55.0%
! TTCCACAGCTGTTTCGCCGT+TGG + chr7_1:70798861-70798880 None:intergenic 55.0%
! TCGATAGCTTTGCACCGAGG+TGG - chr7_1:70799021-70799040 Msa1035060:three_prime_UTR 55.0%
! CACCATGGTGGTGATAAGCC+TGG - chr7_1:70799119-70799138 Msa1035060:three_prime_UTR 55.0%
CTCCAGGCTTATCACCACCA+TGG + chr7_1:70799124-70799143 None:intergenic 55.0%
! CATGGTGGTGATAAGCCTGG+AGG - chr7_1:70799122-70799141 Msa1035060:three_prime_UTR 55.0%
GACTCGATCAGTCTCGAGTG+TGG + chr7_1:70799189-70799208 None:intergenic 55.0%
CTCAGCACGGCTAAGTCTCA+TGG + chr7_1:70799420-70799439 None:intergenic 55.0%
TTCTCAGTGGTGGCTCAGCA+CGG + chr7_1:70799433-70799452 None:intergenic 55.0%
TGCTGAGCCACCACTGAGAA+AGG - chr7_1:70799433-70799452 Msa1035060:intron 55.0%
TGAGCCACCACTGAGAAAGG+AGG - chr7_1:70799436-70799455 Msa1035060:intron 55.0%
!! TGGATGTCGGTTCCCACATG+TGG - chr7_1:70799474-70799493 Msa1035060:intron 55.0%
GACGTGTGTCCATGTGAGGT+GGG + chr7_1:70799730-70799749 None:intergenic 55.0%
AGACGTGTGTCCATGTGAGG+TGG + chr7_1:70799731-70799750 None:intergenic 55.0%
GAGAGACGTGTGTCCATGTG+AGG + chr7_1:70799734-70799753 None:intergenic 55.0%
AGGGTGTGCGGAATCAGCAT+GGG + chr7_1:70799756-70799775 None:intergenic 55.0%
CGCATCCTCACGATGTCAGA+AGG + chr7_1:70799821-70799840 None:intergenic 55.0%
!! GTCTGAGAAGTATCGCCGGT+AGG - chr7_1:70799849-70799868 Msa1035060:intron 55.0%
GACTGCAGTCTTTGCTGAGC+TGG - chr7_1:70799912-70799931 Msa1035060:intron 55.0%
GAGACCAAACCCCACCTTGG+TGG - chr7_1:70797841-70797860 Msa1035060:three_prime_UTR 60.0%
GGCGCCGCAGTGGTATAGAT+TGG - chr7_1:70798212-70798231 Msa1035060:three_prime_UTR 60.0%
! GGGAGCTGATGCTGGCTGTT+TGG - chr7_1:70798262-70798281 Msa1035060:three_prime_UTR 60.0%
GTTTCCTGAGGCGTGGCACT+CGG - chr7_1:70798308-70798327 Msa1035060:three_prime_UTR 60.0%
TCAGCCAGCTCGACAGTCTG+AGG - chr7_1:70799372-70799391 Msa1035060:intron 60.0%
GATGCCTCAGACTGTCGAGC+TGG + chr7_1:70799379-70799398 None:intergenic 60.0%
TCCATGTGAGGTGGGTGCCT+TGG + chr7_1:70799722-70799741 None:intergenic 60.0%
CAGGGTGTGCGGAATCAGCA+TGG + chr7_1:70799757-70799776 None:intergenic 60.0%
GTCGGGGATTTGGCGACTCA+AGG - chr7_1:70799884-70799903 Msa1035060:intron 60.0%
GGCGCCAGAGGACTATCAGG+AGG + chr7_1:70798198-70798217 None:intergenic 65.0%
TGCGGCGCCAGAGGACTATC+AGG + chr7_1:70798201-70798220 None:intergenic 65.0%
ATAGTCCTCTGGCGCCGCAG+TGG - chr7_1:70798202-70798221 Msa1035060:three_prime_UTR 65.0%
CTATACCACTGCGGCGCCAG+AGG + chr7_1:70798210-70798229 None:intergenic 65.0%
GGTGAGAGGGGAGCTGATGC+TGG - chr7_1:70798254-70798273 Msa1035060:three_prime_UTR 65.0%
TGAGGCGTGGCACTCGGATG+CGG - chr7_1:70798314-70798333 Msa1035060:three_prime_UTR 65.0%
TCGGATGCGGCGACGGTTAG+TGG - chr7_1:70798327-70798346 Msa1035060:three_prime_UTR 65.0%
GCCCAACGGCGAAACAGCTG+TGG - chr7_1:70798856-70798875 Msa1035060:three_prime_UTR 65.0%
! GCCAAGGCACCCACCTCACA+TGG - chr7_1:70799718-70799737 Msa1035060:intron 65.0%
GCATCCGAGTGCCACGCCTC+AGG + chr7_1:70798315-70798334 None:intergenic 70.0%
GTGGCACTCGGATGCGGCGA+CGG - chr7_1:70798320-70798339 Msa1035060:three_prime_UTR 70.0%
Chromosome Type Strat End Strand Name
chr7_1 gene 70796690 70800374 70796690 ID=Msa1035060;Name=Msa1035060
chr7_1 mRNA 70796690 70800374 70796690 ID=Msa1035060-mRNA-1;Parent=Msa1035060;Name=Msa1035060-mRNA-1;_AED=0.10;_eAED=0.13;_QI=0|0|0.33|1|0|0|3|2579|92
chr7_1 exon 70796690 70799377 70796690 ID=Msa1035060-mRNA-1:exon:17033;Parent=Msa1035060-mRNA-1
chr7_1 exon 70799609 70799637 70799609 ID=Msa1035060-mRNA-1:exon:17032;Parent=Msa1035060-mRNA-1
chr7_1 exon 70800234 70800374 70800234 ID=Msa1035060-mRNA-1:exon:17031;Parent=Msa1035060-mRNA-1
chr7_1 CDS 70800234 70800374 70800234 ID=Msa1035060-mRNA-1:cds;Parent=Msa1035060-mRNA-1
chr7_1 CDS 70799609 70799637 70799609 ID=Msa1035060-mRNA-1:cds;Parent=Msa1035060-mRNA-1
chr7_1 CDS 70799269 70799377 70799269 ID=Msa1035060-mRNA-1:cds;Parent=Msa1035060-mRNA-1
chr7_1 three_prime_UTR 70796690 70799268 70796690 ID=Msa1035060-mRNA-1:three_prime_utr;Parent=Msa1035060-mRNA-1
Gene Sequence

>Msa1035060

ATGAAGTGGGGTCCAGAGCCATTCCTTCATCCACCACCCTGTACAGCAACAGAGGTCCAGTCCAACACTATTGCAAAAAGGCAAAGTAGGGAGCTTCTTTGTATATTTTCTACAGATTCATCAGATCCTATCAAAGGAAAAAGAGTGAAAATCGGATCTGAAGGTTTCAAGCTCCTTGGAACAGTTCATTTTTTAATTCAAAAACACATTTTCAAGCTCCTACCACTAGTGAAGAAAAAAAAATCAATATTTGAAATTGTTGCTTCTGTGATTCTTTGA
Protein sequence

>Msa1035060

MKWGPEPFLHPPPCTATEVQSNTIAKRQSRELLCIFSTDSSDPIKGKRVKIGSEGFKLLGTVHFLIQKHIFKLLPLVKKKKSIFEIVASVIL*