AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0479420

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0479420 MtrunA17_Chr3g0142731 100.000 307 0 0 1 307 1 307 0.0 649
Msa0479420 MtrunA17_Chr7g0255791 93.811 307 17 1 1 307 1 305 0.0 587
Msa0479420 MtrunA17_Chr2g0292921 94.137 307 16 1 1 307 1 305 0.0 585
Msa0479420 MtrunA17_Chr4g0051631 93.485 307 18 1 1 307 1 305 0.0 582
Msa0479420 MtrunA17_Chr1g0203181 92.834 307 20 1 1 307 1 305 0.0 580
Msa0479420 MtrunA17_Chr8g0386781 92.834 307 20 1 1 307 1 305 0.0 580
Msa0479420 MtrunA17_Chr4g0008401 92.182 307 22 1 1 307 1 305 0.0 579
Msa0479420 MtrunA17_Chr4g0008361 91.857 307 23 1 1 307 1 305 0.0 577
Msa0479420 MtrunA17_Chr4g0007371 91.909 309 21 2 1 307 1 307 0.0 571
Msa0479420 MtrunA17_Chr8g0393021 90.291 309 25 2 1 307 1 306 0.0 564
Msa0479420 MtrunA17_Chr8g0378821 43.974 307 172 0 1 307 1 307 1.30e-90 277
Msa0479420 MtrunA17_Chr6g0461281 43.831 308 172 1 1 307 1 308 1.19e-87 269
Msa0479420 MtrunA17_Chr1g0206881 43.730 311 167 2 1 307 1 307 2.03e-87 269
Msa0479420 MtrunA17_Chr7g0253411 42.020 307 178 0 1 307 1 307 2.73e-87 268
Msa0479420 MtrunA17_Chr3g0140821 43.087 311 169 2 1 307 1 307 5.05e-87 268
Msa0479420 MtrunA17_Chr4g0054511 43.087 311 169 2 1 307 1 307 1.04e-86 267
Msa0479420 MtrunA17_Chr7g0275431 41.158 311 170 6 2 305 3 307 3.54e-82 256
Msa0479420 MtrunA17_Chr2g0300671 40.717 307 177 2 1 307 1 302 1.08e-74 236
Msa0479420 MtrunA17_Chr2g0300491 39.739 307 180 2 1 307 1 302 2.45e-71 228
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0479420 AT1G75780.1 95.114 307 14 1 1 307 1 306 0.0 590
Msa0479420 AT1G20010.1 94.788 307 15 1 1 307 1 306 0.0 587
Msa0479420 AT5G12250.1 93.160 307 19 1 1 307 1 305 0.0 585
Msa0479420 AT5G23860.2 93.160 307 19 1 1 307 1 305 0.0 581
Msa0479420 AT5G23860.1 93.160 307 19 1 1 307 1 305 0.0 581
Msa0479420 AT5G62690.1 93.160 307 19 1 1 307 1 305 0.0 579
Msa0479420 AT5G62700.1 93.160 307 19 1 1 307 1 305 0.0 579
Msa0479420 AT2G29550.1 93.160 307 19 1 1 307 1 305 0.0 576
Msa0479420 AT4G20890.1 92.508 307 21 1 1 307 1 305 0.0 574
Msa0479420 AT5G44340.1 92.182 307 22 1 1 307 1 305 0.0 574
Msa0479420 AT1G64740.1 43.322 307 174 0 1 307 1 307 2.34e-90 276
Msa0479420 AT5G19780.1 43.648 307 173 0 1 307 1 307 7.93e-90 275
Msa0479420 AT5G19770.1 43.648 307 173 0 1 307 1 307 7.93e-90 275
Msa0479420 AT1G50010.1 43.408 311 168 2 1 307 1 307 3.29e-87 268
Msa0479420 AT1G04820.1 43.408 311 168 2 1 307 1 307 3.29e-87 268
Msa0479420 AT4G14960.1 43.087 311 169 2 1 307 1 307 6.52e-87 267
Msa0479420 AT4G14960.2 43.087 311 169 2 1 307 1 307 2.15e-86 266
Msa0479420 AT5G05620.1 40.836 311 171 6 2 305 3 307 1.25e-81 255
Msa0479420 AT3G61650.1 40.836 311 171 6 2 305 3 307 3.50e-81 254

Find 173 sgRNAs with CRISPR-Local

Find 269 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAAGATGAAGAATGAGATTT+AGG 0.135702 3_3:-84434090 None:intergenic
GGGACAGATAGATTTATTTA+TGG 0.176111 3_3:-84433982 None:intergenic
TCGCTTTGTCTTTGAGAAAA+TGG 0.195099 3_3:+84437397 Msa0479420:three_prime_UTR
CCCAGAATTTGGATCCAATT+TGG 0.211203 3_3:-84434158 None:intergenic
ACCAAATTGGATCCAAATTC+TGG 0.227415 3_3:+84434157 Msa0479420:CDS
AATCTGGTGCTGGTAATAAT+TGG 0.230260 3_3:+84434403 Msa0479420:CDS
GCATATCACCTCCCAGAATT+TGG 0.235569 3_3:-84434169 None:intergenic
TATTACACTTCAAATGAAAT+TGG 0.243042 3_3:-84437242 None:intergenic
GATTTAGGGTTTGGTGTGTT+TGG 0.246640 3_3:-84434075 None:intergenic
CTTGGAGGAGGCACGGGTTC+TGG 0.250950 3_3:+84436091 Msa0479420:CDS
ATTTAGGGTTTGGTGTGTTT+GGG 0.257151 3_3:-84434074 None:intergenic
CACATTTGTTGAGTCAGTTC+CGG 0.265997 3_3:-84436629 None:intergenic
CTTCAATTCAGGAGATGTTT+AGG 0.278983 3_3:+84436884 Msa0479420:three_prime_UTR
GAATACATTCATAGCTTTAT+AGG 0.282507 3_3:-84437336 None:intergenic
TGGGAACTCAACTTCAATTC+AGG 0.292593 3_3:+84436873 Msa0479420:three_prime_UTR
ACATGTTGTCTGAGGTTTCC+TGG 0.293676 3_3:+84436479 Msa0479420:CDS
TGTATAGTAATAAAACCATT+AGG 0.296035 3_3:-84437139 None:intergenic
TGTTCCTAGAGCAGTTCTTA+TGG 0.307963 3_3:+84434299 Msa0479420:CDS
GGCCAATGCGGTAACCAAAT+TGG 0.311892 3_3:+84434144 Msa0479420:CDS
GGACGACATCTTCAAATTCT+TGG 0.312961 3_3:-84436842 None:intergenic
ACATTTGTTGAGTCAGTTCC+GGG 0.324818 3_3:-84436628 None:intergenic
GAAGAATGAGATTTAGGGTT+TGG 0.343322 3_3:-84434084 None:intergenic
AAGATGAAGAATGAGATTTA+GGG 0.355346 3_3:-84434089 None:intergenic
GATTTGTTCATCAACCTCTT+TGG 0.362636 3_3:-84436737 None:intergenic
CTATTGCATCCTGGTATTGT+TGG 0.375777 3_3:-84437035 None:intergenic
ATTCTTCATACTTTGTTGAA+TGG 0.376461 3_3:+84436779 Msa0479420:three_prime_UTR
CTCTATTGATATCAAAGATT+AGG 0.378228 3_3:+84436122 Msa0479420:CDS
CCCAGTATACCAATGCAAAA+AGG 0.378377 3_3:-84436947 None:intergenic
GTTTCATTTCATTTGTTTCA+AGG 0.382153 3_3:-84433874 None:intergenic
CACTTTATGACATTTGCTTC+AGG 0.383936 3_3:+84436293 Msa0479420:CDS
ACACTAGACTTCACATTGTT+GGG 0.386553 3_3:-84436805 None:intergenic
CACACTAGACTTCACATTGT+TGG 0.390184 3_3:-84436806 None:intergenic
CTATCGGGGTAATGCCCTAA+TGG 0.391267 3_3:+84437124 Msa0479420:three_prime_UTR
CGTCCTGATAATTTCGTGTT+CGG 0.393752 3_3:+84434378 Msa0479420:CDS
TCTATTGATATCAAAGATTA+GGG 0.396270 3_3:+84436123 Msa0479420:CDS
CTCATGCTTCATTTGAAAGC+TGG 0.396801 3_3:+84437483 Msa0479420:three_prime_UTR
CAAGTTTGCCACTCCCTTGG+AGG 0.398051 3_3:+84436076 Msa0479420:CDS
AAGAATAAAAGAAAAGCTTA+TGG 0.400250 3_3:-84437193 None:intergenic
AGCAGCACACATCATATTCT+TGG 0.402842 3_3:-84436657 None:intergenic
AGAGAGTAACATGAATGATT+TGG 0.405537 3_3:+84437002 Msa0479420:three_prime_UTR
CACTCCCTTGGAGGAGGCAC+GGG 0.410186 3_3:+84436085 Msa0479420:CDS
AATTTCGTGTTCGGACAATC+TGG 0.410356 3_3:+84434387 Msa0479420:CDS
TTTCAAGTTTGCCACTCCCT+TGG 0.411514 3_3:+84436073 Msa0479420:CDS
AGCAGTTTACTGCAATGTTC+CGG 0.413290 3_3:+84436917 Msa0479420:three_prime_UTR
TGTCCGAACACGAAATTATC+AGG 0.413771 3_3:-84434381 None:intergenic
ATGGAAAGAGAGGGAAATGC+GGG 0.413953 3_3:-84433963 None:intergenic
GGTAATAATGGAGGGGATGG+AGG 0.414094 3_3:-84433931 None:intergenic
ACAGATAGTGTAGCATTATA+TGG 0.417861 3_3:-84436220 None:intergenic
GACGACATCTTCAAATTCTT+GGG 0.419923 3_3:-84436841 None:intergenic
AGTCAAGTATCGGCCATGTC+GGG 0.421281 3_3:-84436683 None:intergenic
TCTTGGAGTAAGGGACTTGA+TGG 0.427904 3_3:-84437460 None:intergenic
GTATAGTAATAAAACCATTA+GGG 0.428564 3_3:-84437138 None:intergenic
AGAGAGATCTTGCACGTTCA+AGG 0.432109 3_3:+84434120 Msa0479420:CDS
GTGTATTACAATGAAGCTTC+TGG 0.433261 3_3:+84434267 Msa0479420:CDS
ATCTGGTGCTGGTAATAATT+GGG 0.444114 3_3:+84434404 Msa0479420:CDS
ACAACTGTGTCAGATACCTT+TGG 0.444799 3_3:-84436193 None:intergenic
GGAGGCACGGGTTCTGGCAT+GGG 0.445967 3_3:+84436097 Msa0479420:CDS
AGATTTATTTATGGAAAGAG+AGG 0.446051 3_3:-84433973 None:intergenic
CTGAATGCGTCCTGTCAGAC+AGG 0.447758 3_3:+84437291 Msa0479420:three_prime_UTR
GTCAATCAACTCAGCACCTT+CGG 0.448375 3_3:-84434442 None:intergenic
GAAGCATGAGTCTTGGAGTA+AGG 0.450845 3_3:-84437470 None:intergenic
GGTTAATATGGTAATAATGG+AGG 0.455599 3_3:-84433940 None:intergenic
GTCAATTGAACTCTGATCTC+AGG 0.457782 3_3:+84436501 Msa0479420:CDS
TTTCATTTCATTTGTTTCAA+GGG 0.458775 3_3:-84433873 None:intergenic
TTGGTATACTGGGGAGGGAA+TGG 0.459874 3_3:+84436957 Msa0479420:three_prime_UTR
TTCAAATGAAGCATGAGTCT+TGG 0.462295 3_3:-84437477 None:intergenic
TTCTCAAAGACAAAGCGAAT+AGG 0.466949 3_3:-84437392 None:intergenic
TGAAATGAAATGAAATGAAA+TGG 0.467125 3_3:-84434047 None:intergenic
AGTATCAGATCTGGTCCGTT+TGG 0.467213 3_3:+84434345 Msa0479420:CDS
CCACTCCCTTGGAGGAGGCA+CGG 0.467869 3_3:+84436084 Msa0479420:CDS
ATCCAATTTGGTTACCGCAT+TGG 0.468483 3_3:-84434146 None:intergenic
CCTCCTCAGCTATTGCATCC+TGG 0.470174 3_3:-84437044 None:intergenic
AAAGTAAGCATCATTCTGTC+TGG 0.471664 3_3:-84436154 None:intergenic
CCAAATTGGATCCAAATTCT+GGG 0.472580 3_3:+84434158 Msa0479420:CDS
AGAAGGTGAGGAACATTATG+AGG 0.473711 3_3:+84437083 Msa0479420:three_prime_UTR
GAGTCAGTTCCGGGACAGTA+AGG 0.474292 3_3:-84436619 None:intergenic
AGGTGGAAATGATACTCAAT+TGG 0.476330 3_3:+84434233 Msa0479420:CDS
AGGAGGCACGGGTTCTGGCA+TGG 0.476981 3_3:+84436096 Msa0479420:CDS
TACACTATCTGTCCACCAAC+TGG 0.477941 3_3:+84436231 Msa0479420:CDS
TGATTTCTGCAACTATGAGC+GGG 0.478950 3_3:+84436453 Msa0479420:CDS
ACATTATGAGGAGCAGTAGC+TGG 0.483996 3_3:+84437095 Msa0479420:three_prime_UTR
CTGATACTTTCCATGGTACC+AGG 0.490414 3_3:-84434330 None:intergenic
GAGAATTGTGATTGCTTGCA+AGG 0.495773 3_3:+84434495 Msa0479420:CDS
GTAATAATGGAGGGGATGGA+GGG 0.496457 3_3:-84433930 None:intergenic
TTTGCACCTCTCACTTCTCG+TGG 0.496790 3_3:+84436578 Msa0479420:CDS
TATGGTAATAATGGAGGGGA+TGG 0.497034 3_3:-84433934 None:intergenic
GAACACGGCATTGATCCAAC+TGG 0.497409 3_3:+84434195 Msa0479420:CDS
AGTTGAGTTCCCAATAAAAG+TGG 0.497826 3_3:-84436863 None:intergenic
ATCGAGTGTAAAGCAAAGAT+AGG 0.499869 3_3:-84437436 None:intergenic
GAAGATGATTATGAAGAAGA+AGG 0.502318 3_3:+84437066 Msa0479420:three_prime_UTR
AAAAGTGAAGACGAGGGAAT+GGG 0.507198 3_3:-84436544 None:intergenic
AGTAGCTGGATCAAACTATC+GGG 0.507378 3_3:+84437109 Msa0479420:three_prime_UTR
GTGTCAGATACCTTTGGAGA+TGG 0.509553 3_3:-84436187 None:intergenic
GTGTTCGGACAATCTGGTGC+TGG 0.513250 3_3:+84434393 Msa0479420:CDS
CAGTAGCTGGATCAAACTAT+CGG 0.516295 3_3:+84437108 Msa0479420:three_prime_UTR
TTGCATTGGTATACTGGGGA+GGG 0.517335 3_3:+84436952 Msa0479420:three_prime_UTR
CCGTGCCTCCTCCAAGGGAG+TGG 0.517493 3_3:-84436084 None:intergenic
GAAATAGTGTGCATGCCGTT+TGG 0.520155 3_3:+84437521 Msa0479420:three_prime_UTR
GTTAATATGGTAATAATGGA+GGG 0.522460 3_3:-84433939 None:intergenic
TGATTATCTTCTCAACCAAA+CGG 0.525031 3_3:-84437536 None:intergenic
ATAGAATAACCCTGTCTGAC+AGG 0.525232 3_3:-84437301 None:intergenic
CAGTCAAGTATCGGCCATGT+CGG 0.527949 3_3:-84436684 None:intergenic
TGGGGAGGGAATGGATGAGA+TGG 0.529822 3_3:+84436966 Msa0479420:three_prime_UTR
GTTTGCCACTCCCTTGGAGG+AGG 0.531497 3_3:+84436079 Msa0479420:CDS
ACCATGGAAAGTATCAGATC+TGG 0.532094 3_3:+84434336 Msa0479420:CDS
GGAAAATATGTAAGCGAAGG+TGG 0.533206 3_3:+84434216 Msa0479420:CDS
GAACTCTGATCTCAGGAAGC+TGG 0.535008 3_3:+84436508 Msa0479420:CDS
TGTCAGATACCTTTGGAGAT+GGG 0.536713 3_3:-84436186 None:intergenic
TTTAGGGTTTGGTGTGTTTG+GGG 0.538731 3_3:-84434073 None:intergenic
CAATTCAGGAGATGTTTAGG+AGG 0.541715 3_3:+84436887 Msa0479420:three_prime_UTR
CAGAACCCGTGCCTCCTCCA+AGG 0.541892 3_3:-84436090 None:intergenic
AGATCCATAAGAACTGCTCT+AGG 0.542823 3_3:-84434303 None:intergenic
GGATCTTGAACCTGGTACCA+TGG 0.545394 3_3:+84434320 Msa0479420:CDS
AGAGGTGATACTTACAGCTA+GGG 0.546469 3_3:-84436333 None:intergenic
AATGGATGAGATGGAGTTCA+CGG 0.548252 3_3:+84436975 Msa0479420:three_prime_UTR
AAGCATGAGTCTTGGAGTAA+GGG 0.549329 3_3:-84437469 None:intergenic
TATGGAAAGAGAGGGAAATG+CGG 0.552645 3_3:-84433964 None:intergenic
GTATGTATCCCTTACTGTCC+CGG 0.555378 3_3:+84436610 Msa0479420:CDS
TATCTGTCCCTCTCTTCGAC+TGG 0.555582 3_3:+84433995 Msa0479420:five_prime_UTR
TTGCACCTCTCACTTCTCGT+GGG 0.556219 3_3:+84436579 Msa0479420:CDS
AGAAAATGCAGATGAGTGTA+TGG 0.557071 3_3:+84436255 Msa0479420:CDS
CGGAACTGACTCAACAAATG+TGG 0.558969 3_3:+84436630 Msa0479420:CDS
TTGCAGATGCAGTCAAGTAT+CGG 0.563760 3_3:-84436693 None:intergenic
GTTCTTATGGATCTTGAACC+TGG 0.565674 3_3:+84434312 Msa0479420:CDS
GACATCTTCAAATTCTTGGG+TGG 0.565762 3_3:-84436838 None:intergenic
ACATCTTCAAATTCTTGGGT+GGG 0.570008 3_3:-84436837 None:intergenic
TTTGAGAAAATGGTTGCACT+TGG 0.570956 3_3:+84437407 Msa0479420:three_prime_UTR
TTTGCATTGGTATACTGGGG+AGG 0.575042 3_3:+84436951 Msa0479420:three_prime_UTR
CCAGGATGCAATAGCTGAGG+AGG 0.575079 3_3:+84437044 Msa0479420:three_prime_UTR
TGATTATGAAGAAGAAGGTG+AGG 0.578671 3_3:+84437071 Msa0479420:three_prime_UTR
ACCAGATCTGATACTTTCCA+TGG 0.579539 3_3:-84434337 None:intergenic
AGAACCCGTGCCTCCTCCAA+GGG 0.582447 3_3:-84436089 None:intergenic
GATTTATTTATGGAAAGAGA+GGG 0.584606 3_3:-84433972 None:intergenic
AGATCAGAGTTCAATTGACC+AGG 0.587313 3_3:-84436497 None:intergenic
GCTGGTAATAATTGGGCGAA+AGG 0.589382 3_3:+84434411 Msa0479420:CDS
ACTGCATCTGCAATGTTCAG+AGG 0.592344 3_3:+84436703 Msa0479420:exon
AATTCAGGAGATGTTTAGGA+GGG 0.594241 3_3:+84436888 Msa0479420:three_prime_UTR
AACAAATGAAATGAAACGAA+CGG 0.594732 3_3:+84433880 Msa0479420:five_prime_UTR
AGCGGTTCCAGTCGAAGAGA+GGG 0.595261 3_3:-84434002 None:intergenic
GCTGTAGTAGATACACAGAT+AGG 0.595672 3_3:-84437171 None:intergenic
TTAATATGGTAATAATGGAG+GGG 0.596912 3_3:-84433938 None:intergenic
CTGATTTCTGCAACTATGAG+CGG 0.598763 3_3:+84436452 Msa0479420:CDS
AGCAGAGTACCAACAATACC+AGG 0.600651 3_3:+84437026 Msa0479420:three_prime_UTR
GCGGGGTTACATGTTGTCTG+AGG 0.600876 3_3:+84436471 Msa0479420:CDS
AGTCAGTTCCGGGACAGTAA+GGG 0.601789 3_3:-84436618 None:intergenic
GAAATGATACTCAATTGGAA+AGG 0.601847 3_3:+84434238 Msa0479420:CDS
GGACGAAAGATCTTACCAAA+CGG 0.603254 3_3:-84434360 None:intergenic
GAGCGGTTCCAGTCGAAGAG+AGG 0.604680 3_3:-84434003 None:intergenic
GTCAAGTATCGGCCATGTCG+GGG 0.606494 3_3:-84436682 None:intergenic
GGAACTGACTCAACAAATGT+GGG 0.606867 3_3:+84436631 Msa0479420:CDS
ACAATGAAGCTTCTGGTGGT+AGG 0.609506 3_3:+84434274 Msa0479420:CDS
TCATAGTTGCAGAAATCAGA+TGG 0.613887 3_3:-84436448 None:intergenic
AACAAAAGAATATGATTGAG+CGG 0.615012 3_3:-84434020 None:intergenic
GTGTGCTGCTGACCCCGACA+TGG 0.618840 3_3:+84436670 Msa0479420:CDS
CACGTTCAAGGTGGCCAATG+CGG 0.629178 3_3:+84434132 Msa0479420:CDS
GCGAAAGGTCATTATACCGA+AGG 0.631227 3_3:+84434426 Msa0479420:CDS
ACTGGAAAATATGTAAGCGA+AGG 0.632683 3_3:+84434213 Msa0479420:CDS
CAAAGACAAAGCGAATAGGT+AGG 0.633490 3_3:-84437388 None:intergenic
TGGAAAGAGAGGGAAATGCG+GGG 0.638492 3_3:-84433962 None:intergenic
AGGAAAGATGAGCACCAAAG+AGG 0.640000 3_3:+84436723 Msa0479420:three_prime_UTR
TGAGACCCACGAGAAGTGAG+AGG 0.646294 3_3:-84436584 None:intergenic
TGAATGCGTCCTGTCAGACA+GGG 0.651862 3_3:+84437292 Msa0479420:three_prime_UTR
ATTGATATCAAAGATTAGGG+AGG 0.653042 3_3:+84436126 Msa0479420:CDS
GATTTCTGCAACTATGAGCG+GGG 0.659247 3_3:+84436454 Msa0479420:CDS
GGAAAGAGAGGGAAATGCGG+GGG 0.664393 3_3:-84433961 None:intergenic
ATACCAGGATGCAATAGCTG+AGG 0.682886 3_3:+84437041 Msa0479420:three_prime_UTR
GAGGTGATACTTACAGCTAG+GGG 0.687744 3_3:-84436332 None:intergenic
GTAGCTGGATCAAACTATCG+GGG 0.708017 3_3:+84437110 Msa0479420:three_prime_UTR
GAGGTGATATGCGATGAACA+CGG 0.708035 3_3:+84434180 Msa0479420:CDS
GAGATCTTGCACGTTCAAGG+TGG 0.713098 3_3:+84434123 Msa0479420:CDS
TATTACAATGAAGCTTCTGG+TGG 0.730410 3_3:+84434270 Msa0479420:CDS
AATTGGATCCAAATTCTGGG+AGG 0.748217 3_3:+84434161 Msa0479420:CDS
GGATGAGATGGAGTTCACGG+AGG 0.764427 3_3:+84436978 Msa0479420:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAATTATTTATAAAAT+AGG + chr3_3:84435061-84435080 Msa0479420:intron 0.0%
!!! ATTTTTATTTTGTTTTGTTT+TGG - chr3_3:84433908-84433927 None:intergenic 10.0%
!!! GAAAAATAATAACTTTTTTT+TGG - chr3_3:84435166-84435185 None:intergenic 10.0%
!!! AGAACTAATTTTTATAAAAA+TGG + chr3_3:84435342-84435361 Msa0479420:intron 10.0%
!!! TTTATAAAAATGGTTTTTTA+TGG + chr3_3:84435352-84435371 Msa0479420:intron 10.0%
!!! TAATAATGATGGTATATTTT+AGG + chr3_3:84434892-84434911 Msa0479420:intron 15.0%
!!! AATAATGATGGTATATTTTA+GGG + chr3_3:84434893-84434912 Msa0479420:intron 15.0%
!!! CATAAAATCTATTTTTTTAG+AGG + chr3_3:84435445-84435464 Msa0479420:intron 15.0%
!! AAAAAAAACAATATATTTCG+TGG - chr3_3:84435718-84435737 None:intergenic 15.0%
!! TGAAATGAAATGAAATGAAA+TGG - chr3_3:84434050-84434069 None:intergenic 20.0%
!!! GATCTAGTAATTCAATTTTT+GGG + chr3_3:84434756-84434775 Msa0479420:intron 20.0%
!! GCAATTATACAAAAAAGTAA+AGG - chr3_3:84435484-84435503 None:intergenic 20.0%
!! TTCTACCAAAAAAAAAATCA+TGG + chr3_3:84435573-84435592 Msa0479420:intron 20.0%
!!! AAATTTCATTCAATTTTGTC+AGG + chr3_3:84436049-84436068 Msa0479420:intron 20.0%
!! TCTATTGATATCAAAGATTA+GGG + chr3_3:84436123-84436142 Msa0479420:CDS 20.0%
!! GTATAGTAATAAAACCATTA+GGG - chr3_3:84437141-84437160 None:intergenic 20.0%
!! TGTATAGTAATAAAACCATT+AGG - chr3_3:84437142-84437161 None:intergenic 20.0%
!! AAGAATAAAAGAAAAGCTTA+TGG - chr3_3:84437196-84437215 None:intergenic 20.0%
!! TATTACACTTCAAATGAAAT+TGG - chr3_3:84437245-84437264 None:intergenic 20.0%
! GTTTCATTTCATTTGTTTCA+AGG - chr3_3:84433877-84433896 None:intergenic 25.0%
! AACAAATGAAATGAAACGAA+CGG + chr3_3:84433880-84433899 Msa0479420:five_prime_UTR 25.0%
!! TTAATATGGTAATAATGGAG+GGG - chr3_3:84433941-84433960 None:intergenic 25.0%
!! GTTAATATGGTAATAATGGA+GGG - chr3_3:84433942-84433961 None:intergenic 25.0%
! GATTTATTTATGGAAAGAGA+GGG - chr3_3:84433975-84433994 None:intergenic 25.0%
! AGATTTATTTATGGAAAGAG+AGG - chr3_3:84433976-84433995 None:intergenic 25.0%
! AACAAAAGAATATGATTGAG+CGG - chr3_3:84434023-84434042 None:intergenic 25.0%
! AAGATGAAGAATGAGATTTA+GGG - chr3_3:84434092-84434111 None:intergenic 25.0%
!! GGATCTAGTAATTCAATTTT+TGG + chr3_3:84434755-84434774 Msa0479420:intron 25.0%
! TCATTCTGAGTACAAAATAT+AGG - chr3_3:84434852-84434871 None:intergenic 25.0%
! CATTATTACACAAAAAGTCA+CGG - chr3_3:84434880-84434899 None:intergenic 25.0%
!! GACTTTTTGTGTAATAATGA+TGG + chr3_3:84434881-84434900 Msa0479420:intron 25.0%
! TTGATATGTCAGATATGATA+CGG + chr3_3:84434917-84434936 Msa0479420:intron 25.0%
! ATGCACTACTATAAAAGATA+AGG - chr3_3:84435036-84435055 None:intergenic 25.0%
! TTAAATAAAACATACCGACA+TGG + chr3_3:84435107-84435126 Msa0479420:intron 25.0%
! GAAAAAAATCTGAATCAAAC+GGG - chr3_3:84435144-84435163 None:intergenic 25.0%
! GGAAAAAAATCTGAATCAAA+CGG - chr3_3:84435145-84435164 None:intergenic 25.0%
!! GCTAATAGCTTTTCATTTTA+AGG - chr3_3:84435270-84435289 None:intergenic 25.0%
!!! AATGGTTTTTTATGGATAGT+AGG + chr3_3:84435360-84435379 Msa0479420:intron 25.0%
! TGCCAAAAGAAAAATAATAC+CGG - chr3_3:84435552-84435571 None:intergenic 25.0%
! AATTCCAATGTTTGTCAAAA+TGG - chr3_3:84435631-84435650 None:intergenic 25.0%
!!! TTTTTAAGAAAGTAGACTGA+AGG + chr3_3:84435814-84435833 Msa0479420:intron 25.0%
!!! TTTTAAGAAAGTAGACTGAA+GGG + chr3_3:84435815-84435834 Msa0479420:intron 25.0%
! TTTGTAATATGTCACAGAAT+TGG + chr3_3:84435932-84435951 Msa0479420:intron 25.0%
! TGATCTTTATGTTAGATTTG+TGG + chr3_3:84435990-84436009 Msa0479420:intron 25.0%
! CTCTATTGATATCAAAGATT+AGG + chr3_3:84436122-84436141 Msa0479420:CDS 25.0%
! ATTCTTCATACTTTGTTGAA+TGG + chr3_3:84436779-84436798 Msa0479420:three_prime_UTR 25.0%
!!! GAATACATTCATAGCTTTAT+AGG - chr3_3:84437339-84437358 None:intergenic 25.0%
! AAGCTGGAAAAAAAAATGTA+TGG + chr3_3:84437499-84437518 Msa0479420:three_prime_UTR 25.0%
! TTGAGAAGATAATCAAAAAG+TGG + chr3_3:84437544-84437563 Msa0479420:three_prime_UTR 25.0%
GGTTAATATGGTAATAATGG+AGG - chr3_3:84433943-84433962 None:intergenic 30.0%
GGGACAGATAGATTTATTTA+TGG - chr3_3:84433985-84434004 None:intergenic 30.0%
GAAGATGAAGAATGAGATTT+AGG - chr3_3:84434093-84434112 None:intergenic 30.0%
GAAATGATACTCAATTGGAA+AGG + chr3_3:84434238-84434257 Msa0479420:CDS 30.0%
CTCAATTGTGATTAATGTCT+TGG + chr3_3:84434543-84434562 Msa0479420:intron 30.0%
CAGAGGTTAATGATACATAA+AGG + chr3_3:84434667-84434686 Msa0479420:intron 30.0%
! GAAACATGATGATGATTGAA+AGG + chr3_3:84434994-84435013 Msa0479420:intron 30.0%
CACTACTATAAAAGATAAGG+TGG - chr3_3:84435033-84435052 None:intergenic 30.0%
GCATTTCTAAGTGTTTGTTT+AGG + chr3_3:84435204-84435223 Msa0479420:intron 30.0%
!! GACCGGTATTATTTTTCTTT+TGG + chr3_3:84435547-84435566 Msa0479420:intron 30.0%
!!! ACGTGCCATGATTTTTTTTT+TGG - chr3_3:84435581-84435600 None:intergenic 30.0%
! TACATTGGTTATTCTACAGA+TGG - chr3_3:84435692-84435711 None:intergenic 30.0%
TATATTTCGTGGATCTACAT+TGG - chr3_3:84435707-84435726 None:intergenic 30.0%
ATTGATATCAAAGATTAGGG+AGG + chr3_3:84436126-84436145 Msa0479420:CDS 30.0%
ACAGATAGTGTAGCATTATA+TGG - chr3_3:84436223-84436242 None:intergenic 30.0%
TCAGTACCTCAATTAATCAA+AGG + chr3_3:84436362-84436381 Msa0479420:intron 30.0%
AGACAACCTTTGATTAATTG+AGG - chr3_3:84436371-84436390 None:intergenic 30.0%
AGAGAGTAACATGAATGATT+TGG + chr3_3:84437002-84437021 Msa0479420:three_prime_UTR 30.0%
GAAGATGATTATGAAGAAGA+AGG + chr3_3:84437066-84437085 Msa0479420:three_prime_UTR 30.0%
TGATTATCTTCTCAACCAAA+CGG - chr3_3:84437539-84437558 None:intergenic 30.0%
GGGGGTTAATATGGTAATAA+TGG - chr3_3:84433946-84433965 None:intergenic 35.0%
!! ATTTAGGGTTTGGTGTGTTT+GGG - chr3_3:84434077-84434096 None:intergenic 35.0%
! GAAGAATGAGATTTAGGGTT+TGG - chr3_3:84434087-84434106 None:intergenic 35.0%
ACCAAATTGGATCCAAATTC+TGG + chr3_3:84434157-84434176 Msa0479420:CDS 35.0%
CCAAATTGGATCCAAATTCT+GGG + chr3_3:84434158-84434177 Msa0479420:CDS 35.0%
! TCGCTTACATATTTTCCAGT+TGG - chr3_3:84434213-84434232 None:intergenic 35.0%
ACTGGAAAATATGTAAGCGA+AGG + chr3_3:84434213-84434232 Msa0479420:CDS 35.0%
AGGTGGAAATGATACTCAAT+TGG + chr3_3:84434233-84434252 Msa0479420:CDS 35.0%
GTGTATTACAATGAAGCTTC+TGG + chr3_3:84434267-84434286 Msa0479420:CDS 35.0%
TATTACAATGAAGCTTCTGG+TGG + chr3_3:84434270-84434289 Msa0479420:CDS 35.0%
!! AATCTGGTGCTGGTAATAAT+TGG + chr3_3:84434403-84434422 Msa0479420:CDS 35.0%
!! ATCTGGTGCTGGTAATAATT+GGG + chr3_3:84434404-84434423 Msa0479420:CDS 35.0%
AATCGTCACGATTTCAATCA+TGG - chr3_3:84434647-84434666 None:intergenic 35.0%
ATAAAATCCTGCTGCAGTAT+AGG + chr3_3:84434690-84434709 Msa0479420:intron 35.0%
ATACCGACATGGAGTATATA+GGG + chr3_3:84435118-84435137 Msa0479420:intron 35.0%
ATTGCTTGTAGTCACTGAAA+TGG + chr3_3:84435499-84435518 Msa0479420:intron 35.0%
TTGCTTGTAGTCACTGAAAT+GGG + chr3_3:84435500-84435519 Msa0479420:intron 35.0%
GAAAAATAATACCGGTCTGT+CGG - chr3_3:84435544-84435563 None:intergenic 35.0%
CCAATGTTTGTCAAAATGGT+TGG - chr3_3:84435627-84435646 None:intergenic 35.0%
!! CCAACCATTTTGACAAACAT+TGG + chr3_3:84435624-84435643 Msa0479420:intron 35.0%
TTCTATTGTTTGCCCAGTTA+GGG - chr3_3:84435881-84435900 None:intergenic 35.0%
ATTCTATTGTTTGCCCAGTT+AGG - chr3_3:84435882-84435901 None:intergenic 35.0%
TAACTGGGCAAACAATAGAA+TGG + chr3_3:84435881-84435900 Msa0479420:intron 35.0%
AACTGGGCAAACAATAGAAT+GGG + chr3_3:84435882-84435901 Msa0479420:intron 35.0%
AAAGTAAGCATCATTCTGTC+TGG - chr3_3:84436157-84436176 None:intergenic 35.0%
AGAAAATGCAGATGAGTGTA+TGG + chr3_3:84436255-84436274 Msa0479420:CDS 35.0%
CACTTTATGACATTTGCTTC+AGG + chr3_3:84436293-84436312 Msa0479420:CDS 35.0%
!! TTGAGGTACTGAAAAAGAAG+AGG - chr3_3:84436354-84436373 None:intergenic 35.0%
CTCATTGTGTAATTGCAGTT+GGG + chr3_3:84436417-84436436 Msa0479420:intron 35.0%
TCATTGTGTAATTGCAGTTG+GGG + chr3_3:84436418-84436437 Msa0479420:intron 35.0%
TCATAGTTGCAGAAATCAGA+TGG - chr3_3:84436451-84436470 None:intergenic 35.0%
CCATAAAAAAGTGAAGACGA+GGG - chr3_3:84436553-84436572 None:intergenic 35.0%
ACCATAAAAAAGTGAAGACG+AGG - chr3_3:84436554-84436573 None:intergenic 35.0%
!!! CGTCTTCACTTTTTTATGGT+TGG + chr3_3:84436554-84436573 Msa0479420:CDS 35.0%
! GATTTGTTCATCAACCTCTT+TGG - chr3_3:84436740-84436759 None:intergenic 35.0%
ACACTAGACTTCACATTGTT+GGG - chr3_3:84436808-84436827 None:intergenic 35.0%
ACATCTTCAAATTCTTGGGT+GGG - chr3_3:84436840-84436859 None:intergenic 35.0%
GACGACATCTTCAAATTCTT+GGG - chr3_3:84436844-84436863 None:intergenic 35.0%
!! AAGATGTCGTCCACTTTTAT+TGG + chr3_3:84436853-84436872 Msa0479420:three_prime_UTR 35.0%
!! AGATGTCGTCCACTTTTATT+GGG + chr3_3:84436854-84436873 Msa0479420:three_prime_UTR 35.0%
AGTTGAGTTCCCAATAAAAG+TGG - chr3_3:84436866-84436885 None:intergenic 35.0%
CTTCAATTCAGGAGATGTTT+AGG + chr3_3:84436884-84436903 Msa0479420:three_prime_UTR 35.0%
AATTCAGGAGATGTTTAGGA+GGG + chr3_3:84436888-84436907 Msa0479420:three_prime_UTR 35.0%
!! CCTTTTTGCATTGGTATACT+GGG + chr3_3:84436947-84436966 Msa0479420:three_prime_UTR 35.0%
!! CTTTTTGCATTGGTATACTG+GGG + chr3_3:84436948-84436967 Msa0479420:three_prime_UTR 35.0%
TGATTATGAAGAAGAAGGTG+AGG + chr3_3:84437071-84437090 Msa0479420:three_prime_UTR 35.0%
TTCTCAAAGACAAAGCGAAT+AGG - chr3_3:84437395-84437414 None:intergenic 35.0%
! TCGCTTTGTCTTTGAGAAAA+TGG + chr3_3:84437397-84437416 Msa0479420:three_prime_UTR 35.0%
TTTGAGAAAATGGTTGCACT+TGG + chr3_3:84437407-84437426 Msa0479420:three_prime_UTR 35.0%
ATCGAGTGTAAAGCAAAGAT+AGG - chr3_3:84437439-84437458 None:intergenic 35.0%
TTCAAATGAAGCATGAGTCT+TGG - chr3_3:84437480-84437499 None:intergenic 35.0%
! TATGGTAATAATGGAGGGGA+TGG - chr3_3:84433937-84433956 None:intergenic 40.0%
TATGGAAAGAGAGGGAAATG+CGG - chr3_3:84433967-84433986 None:intergenic 40.0%
!! TTTAGGGTTTGGTGTGTTTG+GGG - chr3_3:84434076-84434095 None:intergenic 40.0%
!! GATTTAGGGTTTGGTGTGTT+TGG - chr3_3:84434078-84434097 None:intergenic 40.0%
ATCCAATTTGGTTACCGCAT+TGG - chr3_3:84434149-84434168 None:intergenic 40.0%
CCCAGAATTTGGATCCAATT+TGG - chr3_3:84434161-84434180 None:intergenic 40.0%
AATTGGATCCAAATTCTGGG+AGG + chr3_3:84434161-84434180 Msa0479420:CDS 40.0%
GGAAAATATGTAAGCGAAGG+TGG + chr3_3:84434216-84434235 Msa0479420:CDS 40.0%
TGTTCCTAGAGCAGTTCTTA+TGG + chr3_3:84434299-84434318 Msa0479420:CDS 40.0%
AGATCCATAAGAACTGCTCT+AGG - chr3_3:84434306-84434325 None:intergenic 40.0%
GTTCTTATGGATCTTGAACC+TGG + chr3_3:84434312-84434331 Msa0479420:CDS 40.0%
!! ACCATGGAAAGTATCAGATC+TGG + chr3_3:84434336-84434355 Msa0479420:CDS 40.0%
ACCAGATCTGATACTTTCCA+TGG - chr3_3:84434340-84434359 None:intergenic 40.0%
GGACGAAAGATCTTACCAAA+CGG - chr3_3:84434363-84434382 None:intergenic 40.0%
CGTCCTGATAATTTCGTGTT+CGG + chr3_3:84434378-84434397 Msa0479420:CDS 40.0%
TGTCCGAACACGAAATTATC+AGG - chr3_3:84434384-84434403 None:intergenic 40.0%
AATTTCGTGTTCGGACAATC+TGG + chr3_3:84434387-84434406 Msa0479420:CDS 40.0%
GAGAATTGTGATTGCTTGCA+AGG + chr3_3:84434495-84434514 Msa0479420:CDS 40.0%
TTGAAATCGTGACGATTCAG+AGG + chr3_3:84434650-84434669 Msa0479420:intron 40.0%
TTCAATTCCTATACTGCAGC+AGG - chr3_3:84434700-84434719 None:intergenic 40.0%
! GTGCACTCTGAAAATTCTAG+AGG + chr3_3:84434734-84434753 Msa0479420:intron 40.0%
TCCTGACTTTCTGTAGATCT+TGG + chr3_3:84434971-84434990 Msa0479420:intron 40.0%
CCTGACTTTCTGTAGATCTT+GGG + chr3_3:84434972-84434991 Msa0479420:intron 40.0%
! ATGATGATTGAAAGGCATGC+AGG + chr3_3:84435002-84435021 Msa0479420:intron 40.0%
CATACCGACATGGAGTATAT+AGG + chr3_3:84435117-84435136 Msa0479420:intron 40.0%
GTTACACAGAGCTATGATCA+AGG + chr3_3:84435853-84435872 Msa0479420:intron 40.0%
TATGATCAAGGTTCCCTAAC+TGG + chr3_3:84435865-84435884 Msa0479420:intron 40.0%
ATGATCAAGGTTCCCTAACT+GGG + chr3_3:84435866-84435885 Msa0479420:intron 40.0%
ACTGGGCAAACAATAGAATG+GGG + chr3_3:84435883-84435902 Msa0479420:intron 40.0%
! TGTCAGATACCTTTGGAGAT+GGG - chr3_3:84436189-84436208 None:intergenic 40.0%
ACAACTGTGTCAGATACCTT+TGG - chr3_3:84436196-84436215 None:intergenic 40.0%
! CATCTGCATTTTCTACCAGT+TGG - chr3_3:84436249-84436268 None:intergenic 40.0%
AGAGGTGATACTTACAGCTA+GGG - chr3_3:84436336-84436355 None:intergenic 40.0%
AAGAGGTGATACTTACAGCT+AGG - chr3_3:84436337-84436356 None:intergenic 40.0%
CCAACTGCAATTACACAATG+AGG - chr3_3:84436419-84436438 None:intergenic 40.0%
CCTCATTGTGTAATTGCAGT+TGG + chr3_3:84436416-84436435 Msa0479420:intron 40.0%
CTGATTTCTGCAACTATGAG+CGG + chr3_3:84436452-84436471 Msa0479420:CDS 40.0%
TGATTTCTGCAACTATGAGC+GGG + chr3_3:84436453-84436472 Msa0479420:CDS 40.0%
AGATCAGAGTTCAATTGACC+AGG - chr3_3:84436500-84436519 None:intergenic 40.0%
GTCAATTGAACTCTGATCTC+AGG + chr3_3:84436501-84436520 Msa0479420:CDS 40.0%
AAAAGTGAAGACGAGGGAAT+GGG - chr3_3:84436547-84436566 None:intergenic 40.0%
AAAAAGTGAAGACGAGGGAA+TGG - chr3_3:84436548-84436567 None:intergenic 40.0%
!!! CCCTCGTCTTCACTTTTTTA+TGG + chr3_3:84436550-84436569 Msa0479420:CDS 40.0%
! ACATTTGTTGAGTCAGTTCC+GGG - chr3_3:84436631-84436650 None:intergenic 40.0%
! CACATTTGTTGAGTCAGTTC+CGG - chr3_3:84436632-84436651 None:intergenic 40.0%
! GGAACTGACTCAACAAATGT+GGG + chr3_3:84436631-84436650 Msa0479420:CDS 40.0%
AGCAGCACACATCATATTCT+TGG - chr3_3:84436660-84436679 None:intergenic 40.0%
TTGCAGATGCAGTCAAGTAT+CGG - chr3_3:84436696-84436715 None:intergenic 40.0%
CACACTAGACTTCACATTGT+TGG - chr3_3:84436809-84436828 None:intergenic 40.0%
GACATCTTCAAATTCTTGGG+TGG - chr3_3:84436841-84436860 None:intergenic 40.0%
GGACGACATCTTCAAATTCT+TGG - chr3_3:84436845-84436864 None:intergenic 40.0%
TGGGAACTCAACTTCAATTC+AGG + chr3_3:84436873-84436892 Msa0479420:three_prime_UTR 40.0%
CAATTCAGGAGATGTTTAGG+AGG + chr3_3:84436887-84436906 Msa0479420:three_prime_UTR 40.0%
AGCAGTTTACTGCAATGTTC+CGG + chr3_3:84436917-84436936 Msa0479420:three_prime_UTR 40.0%
!! GCCTTTTTGCATTGGTATAC+TGG + chr3_3:84436946-84436965 Msa0479420:three_prime_UTR 40.0%
CCCAGTATACCAATGCAAAA+AGG - chr3_3:84436950-84436969 None:intergenic 40.0%
AATGGATGAGATGGAGTTCA+CGG + chr3_3:84436975-84436994 Msa0479420:three_prime_UTR 40.0%
CTATTGCATCCTGGTATTGT+TGG - chr3_3:84437038-84437057 None:intergenic 40.0%
AGAAGGTGAGGAACATTATG+AGG + chr3_3:84437083-84437102 Msa0479420:three_prime_UTR 40.0%
CAGTAGCTGGATCAAACTAT+CGG + chr3_3:84437108-84437127 Msa0479420:three_prime_UTR 40.0%
AGTAGCTGGATCAAACTATC+GGG + chr3_3:84437109-84437128 Msa0479420:three_prime_UTR 40.0%
GCTGTAGTAGATACACAGAT+AGG - chr3_3:84437174-84437193 None:intergenic 40.0%
ATAGAATAACCCTGTCTGAC+AGG - chr3_3:84437304-84437323 None:intergenic 40.0%
CAAAGACAAAGCGAATAGGT+AGG - chr3_3:84437391-84437410 None:intergenic 40.0%
AAGCATGAGTCTTGGAGTAA+GGG - chr3_3:84437472-84437491 None:intergenic 40.0%
CTCATGCTTCATTTGAAAGC+TGG + chr3_3:84437483-84437502 Msa0479420:three_prime_UTR 40.0%
! GTAATAATGGAGGGGATGGA+GGG - chr3_3:84433933-84433952 None:intergenic 45.0%
ATGGAAAGAGAGGGAAATGC+GGG - chr3_3:84433966-84433985 None:intergenic 45.0%
AGAGAGATCTTGCACGTTCA+AGG + chr3_3:84434120-84434139 Msa0479420:CDS 45.0%
GCATATCACCTCCCAGAATT+TGG - chr3_3:84434172-84434191 None:intergenic 45.0%
GAGGTGATATGCGATGAACA+CGG + chr3_3:84434180-84434199 Msa0479420:CDS 45.0%
ACAATGAAGCTTCTGGTGGT+AGG + chr3_3:84434274-84434293 Msa0479420:CDS 45.0%
CTGATACTTTCCATGGTACC+AGG - chr3_3:84434333-84434352 None:intergenic 45.0%
AGTATCAGATCTGGTCCGTT+TGG + chr3_3:84434345-84434364 Msa0479420:CDS 45.0%
GCTGGTAATAATTGGGCGAA+AGG + chr3_3:84434411-84434430 Msa0479420:CDS 45.0%
GCGAAAGGTCATTATACCGA+AGG + chr3_3:84434426-84434445 Msa0479420:CDS 45.0%
GTCAATCAACTCAGCACCTT+CGG - chr3_3:84434445-84434464 None:intergenic 45.0%
CCCAAGATCTACAGAAAGTC+AGG - chr3_3:84434975-84434994 None:intergenic 45.0%
! ATGATTGAAAGGCATGCAGG+AGG + chr3_3:84435005-84435024 Msa0479420:intron 45.0%
! TGATTGAAAGGCATGCAGGA+GGG + chr3_3:84435006-84435025 Msa0479420:intron 45.0%
CTGTCGGTGGTTGTAATCAT+AGG - chr3_3:84435528-84435547 None:intergenic 45.0%
AAATAATACCGGTCTGTCGG+TGG - chr3_3:84435541-84435560 None:intergenic 45.0%
!! TTTCAAGTTTGCCACTCCCT+TGG + chr3_3:84436073-84436092 Msa0479420:CDS 45.0%
! CTCTGTTTTCCCATCTCCAA+AGG + chr3_3:84436177-84436196 Msa0479420:CDS 45.0%
! GTGTCAGATACCTTTGGAGA+TGG - chr3_3:84436190-84436209 None:intergenic 45.0%
TACACTATCTGTCCACCAAC+TGG + chr3_3:84436231-84436250 Msa0479420:CDS 45.0%
! CTGCATTTTCTACCAGTTGG+TGG - chr3_3:84436246-84436265 None:intergenic 45.0%
GAGGTGATACTTACAGCTAG+GGG - chr3_3:84436335-84436354 None:intergenic 45.0%
GATTTCTGCAACTATGAGCG+GGG + chr3_3:84436454-84436473 Msa0479420:CDS 45.0%
! ACATGTTGTCTGAGGTTTCC+TGG + chr3_3:84436479-84436498 Msa0479420:CDS 45.0%
GTATGTATCCCTTACTGTCC+CGG + chr3_3:84436610-84436629 Msa0479420:CDS 45.0%
! CGGAACTGACTCAACAAATG+TGG + chr3_3:84436630-84436649 Msa0479420:CDS 45.0%
ACTGCATCTGCAATGTTCAG+AGG + chr3_3:84436703-84436722 Msa0479420:exon 45.0%
AGGAAAGATGAGCACCAAAG+AGG + chr3_3:84436723-84436742 Msa0479420:three_prime_UTR 45.0%
AATGCAAAAAGGCTTTGCGC+CGG - chr3_3:84436939-84436958 None:intergenic 45.0%
! TTTGCATTGGTATACTGGGG+AGG + chr3_3:84436951-84436970 Msa0479420:three_prime_UTR 45.0%
! TTGCATTGGTATACTGGGGA+GGG + chr3_3:84436952-84436971 Msa0479420:three_prime_UTR 45.0%
! AGCAGAGTACCAACAATACC+AGG + chr3_3:84437026-84437045 Msa0479420:three_prime_UTR 45.0%
ATACCAGGATGCAATAGCTG+AGG + chr3_3:84437041-84437060 Msa0479420:three_prime_UTR 45.0%
ACATTATGAGGAGCAGTAGC+TGG + chr3_3:84437095-84437114 Msa0479420:three_prime_UTR 45.0%
GTAGCTGGATCAAACTATCG+GGG + chr3_3:84437110-84437129 Msa0479420:three_prime_UTR 45.0%
TCTTGGAGTAAGGGACTTGA+TGG - chr3_3:84437463-84437482 None:intergenic 45.0%
GAAGCATGAGTCTTGGAGTA+AGG - chr3_3:84437473-84437492 None:intergenic 45.0%
GAAATAGTGTGCATGCCGTT+TGG + chr3_3:84437521-84437540 Msa0479420:three_prime_UTR 45.0%
! GGTAATAATGGAGGGGATGG+AGG - chr3_3:84433934-84433953 None:intergenic 50.0%
GGGAAATGCGGGGGTTAATA+TGG - chr3_3:84433955-84433974 None:intergenic 50.0%
TGGAAAGAGAGGGAAATGCG+GGG - chr3_3:84433965-84433984 None:intergenic 50.0%
TATCTGTCCCTCTCTTCGAC+TGG + chr3_3:84433995-84434014 Msa0479420:five_prime_UTR 50.0%
GAGATCTTGCACGTTCAAGG+TGG + chr3_3:84434123-84434142 Msa0479420:CDS 50.0%
GGCCAATGCGGTAACCAAAT+TGG + chr3_3:84434144-84434163 Msa0479420:CDS 50.0%
!! GAACACGGCATTGATCCAAC+TGG + chr3_3:84434195-84434214 Msa0479420:CDS 50.0%
GGATCTTGAACCTGGTACCA+TGG + chr3_3:84434320-84434339 Msa0479420:CDS 50.0%
GGGCCCTATATACTCCATGT+CGG - chr3_3:84435124-84435143 None:intergenic 50.0%
GATTACAACCACCGACAGAC+CGG + chr3_3:84435530-84435549 Msa0479420:intron 50.0%
GAACTCTGATCTCAGGAAGC+TGG + chr3_3:84436508-84436527 Msa0479420:CDS 50.0%
TTTGCACCTCTCACTTCTCG+TGG + chr3_3:84436578-84436597 Msa0479420:CDS 50.0%
TTGCACCTCTCACTTCTCGT+GGG + chr3_3:84436579-84436598 Msa0479420:CDS 50.0%
AGTCAGTTCCGGGACAGTAA+GGG - chr3_3:84436621-84436640 None:intergenic 50.0%
!! AGTCAAGTATCGGCCATGTC+GGG - chr3_3:84436686-84436705 None:intergenic 50.0%
!! CAGTCAAGTATCGGCCATGT+CGG - chr3_3:84436687-84436706 None:intergenic 50.0%
! GGCGCAAAGCCTTTTTGCAT+TGG + chr3_3:84436938-84436957 Msa0479420:three_prime_UTR 50.0%
TTGGTATACTGGGGAGGGAA+TGG + chr3_3:84436957-84436976 Msa0479420:three_prime_UTR 50.0%
CTATCGGGGTAATGCCCTAA+TGG + chr3_3:84437124-84437143 Msa0479420:three_prime_UTR 50.0%
TGAATGCGTCCTGTCAGACA+GGG + chr3_3:84437292-84437311 Msa0479420:three_prime_UTR 50.0%
GGAAAGAGAGGGAAATGCGG+GGG - chr3_3:84433964-84433983 None:intergenic 55.0%
AGCGGTTCCAGTCGAAGAGA+GGG - chr3_3:84434005-84434024 None:intergenic 55.0%
CACGTTCAAGGTGGCCAATG+CGG + chr3_3:84434132-84434151 Msa0479420:CDS 55.0%
GTGTTCGGACAATCTGGTGC+TGG + chr3_3:84434393-84434412 Msa0479420:CDS 55.0%
CAAGTTTGCCACTCCCTTGG+AGG + chr3_3:84436076-84436095 Msa0479420:CDS 55.0%
GCGGGGTTACATGTTGTCTG+AGG + chr3_3:84436471-84436490 Msa0479420:CDS 55.0%
TGAGACCCACGAGAAGTGAG+AGG - chr3_3:84436587-84436606 None:intergenic 55.0%
GAGTCAGTTCCGGGACAGTA+AGG - chr3_3:84436622-84436641 None:intergenic 55.0%
!! GTCAAGTATCGGCCATGTCG+GGG - chr3_3:84436685-84436704 None:intergenic 55.0%
TGGGGAGGGAATGGATGAGA+TGG + chr3_3:84436966-84436985 Msa0479420:three_prime_UTR 55.0%
GGATGAGATGGAGTTCACGG+AGG + chr3_3:84436978-84436997 Msa0479420:three_prime_UTR 55.0%
CCTCCTCAGCTATTGCATCC+TGG - chr3_3:84437047-84437066 None:intergenic 55.0%
CCAGGATGCAATAGCTGAGG+AGG + chr3_3:84437044-84437063 Msa0479420:three_prime_UTR 55.0%
CTGAATGCGTCCTGTCAGAC+AGG + chr3_3:84437291-84437310 Msa0479420:three_prime_UTR 55.0%
GAGCGGTTCCAGTCGAAGAG+AGG - chr3_3:84434006-84434025 None:intergenic 60.0%
GTTTGCCACTCCCTTGGAGG+AGG + chr3_3:84436079-84436098 Msa0479420:CDS 60.0%
AGAACCCGTGCCTCCTCCAA+GGG - chr3_3:84436092-84436111 None:intergenic 60.0%
CCACTCCCTTGGAGGAGGCA+CGG + chr3_3:84436084-84436103 Msa0479420:CDS 65.0%
! CACTCCCTTGGAGGAGGCAC+GGG + chr3_3:84436085-84436104 Msa0479420:CDS 65.0%
CAGAACCCGTGCCTCCTCCA+AGG - chr3_3:84436093-84436112 None:intergenic 65.0%
! CTTGGAGGAGGCACGGGTTC+TGG + chr3_3:84436091-84436110 Msa0479420:CDS 65.0%
! AGGAGGCACGGGTTCTGGCA+TGG + chr3_3:84436096-84436115 Msa0479420:CDS 65.0%
! GGAGGCACGGGTTCTGGCAT+GGG + chr3_3:84436097-84436116 Msa0479420:CDS 65.0%
! GTGTGCTGCTGACCCCGACA+TGG + chr3_3:84436670-84436689 Msa0479420:CDS 65.0%
CCGTGCCTCCTCCAAGGGAG+TGG - chr3_3:84436087-84436106 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 84433874 84437582 84433874 ID=Msa0479420;Name=Msa0479420
chr3_3 mRNA 84433874 84437582 84433874 ID=Msa0479420-mRNA-1;Parent=Msa0479420;Name=Msa0479420-mRNA-1;_AED=0.03;_eAED=0.03;_QI=243|1|1|1|1|1|3|879|312
chr3_3 exon 84433874 84434516 84433874 ID=Msa0479420-mRNA-1:exon:23947;Parent=Msa0479420-mRNA-1
chr3_3 exon 84436071 84436340 84436071 ID=Msa0479420-mRNA-1:exon:23948;Parent=Msa0479420-mRNA-1
chr3_3 exon 84436435 84437582 84436435 ID=Msa0479420-mRNA-1:exon:23949;Parent=Msa0479420-mRNA-1
chr3_3 five_prime_UTR 84433874 84434116 84433874 ID=Msa0479420-mRNA-1:five_prime_utr;Parent=Msa0479420-mRNA-1
chr3_3 CDS 84434117 84434516 84434117 ID=Msa0479420-mRNA-1:cds;Parent=Msa0479420-mRNA-1
chr3_3 CDS 84436071 84436340 84436071 ID=Msa0479420-mRNA-1:cds;Parent=Msa0479420-mRNA-1
chr3_3 CDS 84436435 84436703 84436435 ID=Msa0479420-mRNA-1:cds;Parent=Msa0479420-mRNA-1
chr3_3 three_prime_UTR 84436704 84437582 84436704 ID=Msa0479420-mRNA-1:three_prime_utr;Parent=Msa0479420-mRNA-1
Gene Sequence

>Msa0479420

ATGAGAGAGATCTTGCACGTTCAAGGTGGCCAATGCGGTAACCAAATTGGATCCAAATTCTGGGAGGTGATATGCGATGAACACGGCATTGATCCAACTGGAAAATATGTAAGCGAAGGTGGAAATGATACTCAATTGGAAAGGATCAATGTGTATTACAATGAAGCTTCTGGTGGTAGGTATGTTCCTAGAGCAGTTCTTATGGATCTTGAACCTGGTACCATGGAAAGTATCAGATCTGGTCCGTTTGGTAAGATCTTTCGTCCTGATAATTTCGTGTTCGGACAATCTGGTGCTGGTAATAATTGGGCGAAAGGTCATTATACCGAAGGTGCTGAGTTGATTGACTCTGTTCTTGATGTTGTTCGTAAAGAAGCAGAGAATTGTGATTGCTTGCAAGGTTTTCAAGTTTGCCACTCCCTTGGAGGAGGCACGGGTTCTGGCATGGGAACTCTATTGATATCAAAGATTAGGGAGGAATATCCAGACAGAATGATGCTTACTTTCTCTGTTTTCCCATCTCCAAAGGTATCTGACACAGTTGTTGAGCCATATAATGCTACACTATCTGTCCACCAACTGGTAGAAAATGCAGATGAGTGTATGGTTCTTGACAATGAAGCACTTTATGACATTTGCTTCAGGACATTAAAACTCAGCACCCCTAGCTTTGGGGATCTGAACCATCTGATTTCTGCAACTATGAGCGGGGTTACATGTTGTCTGAGGTTTCCTGGTCAATTGAACTCTGATCTCAGGAAGCTGGCTGTCAATCTGATCCCATTCCCTCGTCTTCACTTTTTTATGGTTGGATTTGCACCTCTCACTTCTCGTGGGTCTCAGCAGTATGTATCCCTTACTGTCCCGGAACTGACTCAACAAATGTGGGACGCCAAGAATATGATGTGTGCTGCTGACCCCGACATGGCCGATACTTGA
Protein sequence

>Msa0479420

MREILHVQGGQCGNQIGSKFWEVICDEHGIDPTGKYVSEGGNDTQLERINVYYNEASGGRYVPRAVLMDLEPGTMESIRSGPFGKIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLSTPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYVSLTVPELTQQMWDAKNMMCAADPDMADT*