AlfalfaGEDB | Msa0372130

M. sativa cultivar zhongmu-4 / Msa0372130

KEGG: -
GO: -
PFAM: PF14685.9

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0372130	XP_024635291.1	93.355	1505	90	3	1	1495	1	1505	0.0	2788

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0372130	A0A396IUH2	93.355	1505	90	3	1	1495	1	1505	0.0	2788

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0372130	Msa0438490	0.847632	1.022915e-59	-8.615850e-47
Msa0372130	Msa0468390	0.808711	2.708450e-50	-8.615850e-47
Msa0372130	Msa0502510	0.813172	2.927969e-51	-8.615850e-47
Msa0372130	Msa0512260	0.810731	9.962086e-51	-8.615850e-47
Msa0372130	Msa0545920	0.814123	1.808544e-51	-8.615850e-47
Msa0372130	Msa0567610	0.807943	3.947725e-50	-8.615850e-47
Msa0372130	Msa0569530	0.802191	6.307975e-49	-8.615850e-47
Msa0372130	Msa0601720	0.812332	4.471968e-51	-8.615850e-47
Msa0372130	Msa0641990	0.809144	2.187854e-50	-8.615850e-47
Msa0372130	Msa0681050	0.815769	7.801649e-52	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0372130	MtrunA17_Chr3g0120671	93.355	1505	90	3	1	1495	1	1505	0.0	2788

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0372130	AT2G04235.2	37.288	413	245	8	1083	1489	819	1223	2.23e-65	244
Msa0372130	AT2G04235.2	44.697	264	115	10	4	239	6	266	1.20e-40	165
Msa0372130	AT2G04235.1	37.379	412	244	8	1084	1489	846	1249	4.22e-65	243
Msa0372130	AT2G04235.1	41.379	290	113	12	4	239	6	292	1.67e-36	151
Msa0372130	AT2G04235.3	36.111	324	193	8	1084	1401	820	1135	4.63e-43	172
Msa0372130	AT2G04235.3	44.697	264	115	10	4	239	6	266	1.46e-40	164
Msa0372130	AT2G04235.4	44.697	264	115	10	4	239	6	266	1.52e-40	164
Msa0372130	AT2G04235.4	34.409	279	170	7	1084	1357	820	1090	7.16e-34	142

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Find 373 sgRNAs with CRISPR-Local

Find 995 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGGTTTGGCATGCGTAG+TGG	0.611520	3_1:+70460816	None:intergenic
AAAAGTTTGGAGATCAGAAG+TGG	0.515942	3_1:-70458886	Msa0372130:CDS
AAAATCTGTTCCTGGTTATT+TGG	0.105484	3_1:-70455816	Msa0372130:CDS
AAACCAGATTGCTTTAAGGG+AGG	0.646270	3_1:+70461282	None:intergenic
AAAGATAATGTCTTACAAGT+TGG	0.499063	3_1:-70455792	Msa0372130:CDS
AAAGCTACACAATCGCCAAA+TGG	0.537527	3_1:-70463404	Msa0372130:CDS
AAAGTACAACAGCTGAGTTA+TGG	0.449648	3_1:-70457797	Msa0372130:CDS
AAAGTTTGGAGATCAGAAGT+GGG	0.533647	3_1:-70458885	Msa0372130:CDS
AAATATTTAGATTGGCACGC+TGG	0.557553	3_1:-70458580	Msa0372130:intron
AAATCTATTACAAGGACTCC+TGG	0.548446	3_1:+70459921	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GGAAGAAAAAGCTATGATTA+TGG	-	chr3_1:70451273-70451292	Msa0372130:intron	30.0%
AATTATCCCTTCAACTTGAA+AGG	+	chr3_1:70451594-70451613	None:intergenic	30.0%
ACCAACAATATTGTATGAGA+TGG	-	chr3_1:70451632-70451651	Msa0372130:CDS	30.0%
TCCATCTCATACAATATTGT+TGG	+	chr3_1:70451636-70451655	None:intergenic	30.0%
TAGATGTAGATTCTCTAGTA+AGG	-	chr3_1:70451844-70451863	Msa0372130:intron	30.0%
ACTATCTGCAACTAACTAAA+AGG	+	chr3_1:70452095-70452114	None:intergenic	30.0%
ACATGATAAGAAGTCTAATG+AGG	-	chr3_1:70452153-70452172	Msa0372130:intron	30.0%
TATCAAATTGTAGTTGTGCA+TGG	-	chr3_1:70452306-70452325	Msa0372130:intron	30.0%
CTCAATTGTTTACAAGCTAA+CGG	+	chr3_1:70452424-70452443	None:intergenic	30.0%
TTATCACCTTTATCCATCTT+TGG	+	chr3_1:70452475-70452494	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_1	gene	70450473	70464325	70450473	ID=Msa0372130;Name=Msa0372130
chr3_1	mRNA	70450473	70464325	70450473	ID=Msa0372130-mRNA-1;Parent=Msa0372130;Name=Msa0372130-mRNA-1;_AED=0.00;_eAED=0.00;_QI=78\|1\|0.94\|1\|0.93\|0.94\|17\|268\|1495
chr3_1	exon	70450473	70450936	70450473	ID=Msa0372130-mRNA-1:exon:15328;Parent=Msa0372130-mRNA-1
chr3_1	exon	70451621	70451708	70451621	ID=Msa0372130-mRNA-1:exon:15327;Parent=Msa0372130-mRNA-1
chr3_1	exon	70452914	70453019	70452914	ID=Msa0372130-mRNA-1:exon:15326;Parent=Msa0372130-mRNA-1
chr3_1	exon	70455241	70455342	70455241	ID=Msa0372130-mRNA-1:exon:15325;Parent=Msa0372130-mRNA-1
chr3_1	exon	70455432	70455501	70455432	ID=Msa0372130-mRNA-1:exon:15324;Parent=Msa0372130-mRNA-1
chr3_1	exon	70455608	70455687	70455608	ID=Msa0372130-mRNA-1:exon:15323;Parent=Msa0372130-mRNA-1
chr3_1	exon	70455775	70455966	70455775	ID=Msa0372130-mRNA-1:exon:15322;Parent=Msa0372130-mRNA-1
chr3_1	exon	70457685	70457822	70457685	ID=Msa0372130-mRNA-1:exon:15321;Parent=Msa0372130-mRNA-1
chr3_1	exon	70457898	70457985	70457898	ID=Msa0372130-mRNA-1:exon:15320;Parent=Msa0372130-mRNA-1
chr3_1	exon	70458084	70458124	70458084	ID=Msa0372130-mRNA-1:exon:15319;Parent=Msa0372130-mRNA-1
chr3_1	exon	70458512	70458592	70458512	ID=Msa0372130-mRNA-1:exon:15318;Parent=Msa0372130-mRNA-1
chr3_1	exon	70458711	70458782	70458711	ID=Msa0372130-mRNA-1:exon:15317;Parent=Msa0372130-mRNA-1
chr3_1	exon	70458871	70459965	70458871	ID=Msa0372130-mRNA-1:exon:15316;Parent=Msa0372130-mRNA-1
chr3_1	exon	70460579	70461622	70460579	ID=Msa0372130-mRNA-1:exon:15315;Parent=Msa0372130-mRNA-1
chr3_1	exon	70462183	70462407	70462183	ID=Msa0372130-mRNA-1:exon:15314;Parent=Msa0372130-mRNA-1
chr3_1	exon	70463298	70463836	70463298	ID=Msa0372130-mRNA-1:exon:15313;Parent=Msa0372130-mRNA-1
chr3_1	exon	70463917	70464325	70463917	ID=Msa0372130-mRNA-1:exon:15312;Parent=Msa0372130-mRNA-1
chr3_1	five_prime_UTR	70464248	70464325	70464248	ID=Msa0372130-mRNA-1:five_prime_utr;Parent=Msa0372130-mRNA-1
chr3_1	CDS	70463917	70464247	70463917	ID=Msa0372130-mRNA-1:cds;Parent=Msa0372130-mRNA-1
chr3_1	CDS	70463298	70463836	70463298	ID=Msa0372130-mRNA-1:cds;Parent=Msa0372130-mRNA-1
chr3_1	CDS	70462183	70462407	70462183	ID=Msa0372130-mRNA-1:cds;Parent=Msa0372130-mRNA-1
chr3_1	CDS	70460579	70461622	70460579	ID=Msa0372130-mRNA-1:cds;Parent=Msa0372130-mRNA-1
chr3_1	CDS	70458871	70459965	70458871	ID=Msa0372130-mRNA-1:cds;Parent=Msa0372130-mRNA-1
chr3_1	CDS	70458711	70458782	70458711	ID=Msa0372130-mRNA-1:cds;Parent=Msa0372130-mRNA-1
chr3_1	CDS	70458512	70458592	70458512	ID=Msa0372130-mRNA-1:cds;Parent=Msa0372130-mRNA-1
chr3_1	CDS	70458084	70458124	70458084	ID=Msa0372130-mRNA-1:cds;Parent=Msa0372130-mRNA-1
chr3_1	CDS	70457898	70457985	70457898	ID=Msa0372130-mRNA-1:cds;Parent=Msa0372130-mRNA-1
chr3_1	CDS	70457685	70457822	70457685	ID=Msa0372130-mRNA-1:cds;Parent=Msa0372130-mRNA-1
chr3_1	CDS	70455775	70455966	70455775	ID=Msa0372130-mRNA-1:cds;Parent=Msa0372130-mRNA-1
chr3_1	CDS	70455608	70455687	70455608	ID=Msa0372130-mRNA-1:cds;Parent=Msa0372130-mRNA-1
chr3_1	CDS	70455432	70455501	70455432	ID=Msa0372130-mRNA-1:cds;Parent=Msa0372130-mRNA-1
chr3_1	CDS	70455241	70455342	70455241	ID=Msa0372130-mRNA-1:cds;Parent=Msa0372130-mRNA-1
chr3_1	CDS	70452914	70453019	70452914	ID=Msa0372130-mRNA-1:cds;Parent=Msa0372130-mRNA-1
chr3_1	CDS	70451621	70451708	70451621	ID=Msa0372130-mRNA-1:cds;Parent=Msa0372130-mRNA-1
chr3_1	CDS	70450741	70450936	70450741	ID=Msa0372130-mRNA-1:cds;Parent=Msa0372130-mRNA-1
chr3_1	three_prime_UTR	70450473	70450740	70450473	ID=Msa0372130-mRNA-1:three_prime_utr;Parent=Msa0372130-mRNA-1

Gene Sequence

>Msa0372130

ATGAAATCACCTCCGTCCAAGTCCAACAACACCGAAACCGAAGAAGAAACCATCGCATTCAACAGAAAAAGAGCACGCCGCGTAAGCTTCGCCGATAACGAAATCACCTCCGTCCACATCTTCCGTCCCGACGACGACCACTCCTCCTCCTCCTCCGACATCCCCGCAGATACCCTAGGTCTCTTCCGTGACGACGACGAAGAATTAGAACCGCGCCAAAACCCTACCGATGACGCTGCTGAAGTTGTAGATCATCGGAACTCCTTCCTGCAACCGATTGGTTCTCCTTCACCCGGTGGAAGTAGCAATAACGCTGATGACGACAGTGATGATGACGAATTTCGTGGTCCGGTGTCCACGGATTTCATTAAACCGGAACGGTTATCAGATTCCGGTGTCTCCGACGACATTACTATGGACTCGACTGCATTTTCAATGCATTACCGGAGTTTTGCCCGTTCGGATTCAGGGGATCTTAAAACTCCAACGAGGTTTGACGCGACGGTGACTATTGCCGGTCAAAGCAGTGCCACACCGGGGAGTTTGATGGATTTTACTGACGGTGATAAGAAAACGCCTCAGTCGCCTGTGGTTGCGAGTGCTAGCGGGGATTCAGATGATATGAGTATTGAAGGGGAACAAGGAAGAAAAAGCTATGATTATGGAAGACTCTCTCCTAAGTTGGTTGCAATTTTGGCACAGGGAAGTAAGGAGTTGGATGGTGTTTCGCGGTTAGGTTCAAAAGCTACACAATCGCCAAATGGAAATGATATGGAGGTTTTACCTGATTTGGCATGTTCCGCGAACTCGCCTATTCGTCGAATCACCCTTGATAGTGCAATTGCTTCTGCTTCTGAGTCTTCAACCAAGAACACTAAGGAGTTTGTTAATGATGCAACTCCGTTAGCTTGTAAACAATTGAGCTCTGCTAAGGCTAATAGAAGAACCCCGCCAAAGATGGATAAAGGTGATAAGTTAGCCACACATTCACCAATTGCAGATCATGTGGAGGTTTTACCCAACTTGGAATGTTCAGTTAACTCTCCTGTTCATCAAATCACCCCAGTTGCTTCTGCTTCTAAGTCTTCAACTAAGAACAGGGAGCTTGTTAATGATCCAACTCCATTAGCTTTTAAACAATTGGACTCTTCTAAGGCTAATAGAGGAACCCCGCCAAAGCTGGATGAAGGTGATAAGTTAGATTTGGCTGCTAAGTATGAACTGGGTTTCTGCGAAGTCCCCATAAAAGAGAGTAATTCTAAAGACAGGGGACAAGTGACTGACTCTAATCATAAGTCCGATCAAGTTACTGGAAACCATCCAGTACATGAGTTTACACCATTGTCACTTTCTGCAAATAAAGTAGTATTTATGGGTTCTTCTGATTCATTCAGATGTACTGGAAATATAACTCCTCCCTTAAAGCAATCTGGTTTGCTTGTGCCTGAGGTACATGTCGAAAATAGTGCAACTTTGTTGTCCATACGTAAAAGCATTTCAAAGTTGAAAACTCTTAAGACTACCCCAAACACATCTACTCTCAAAGAAGAAACTGACAAATTGAAACTTAGTTTTTCAAAATACTCCCCAGGGACTTCTTTCTTTAGTGAAAGAGATTTTGAAAACAAGCAAGTTGGAACTGTTACTGCTCCTTTGGTGGAAGAGCCATTTAGTTTAACTCTCGAGAATAACATGAGTCGAAGTTTTATCAACACCAACAATCGTGTAGTTGATTCTTTGATTTCGGCCAATGTTTCCTACAATGATAAAAATATTGAGCCTGTGATTGGTGCTTCTTCCTTGCTTAAGACTCATATAACAAGAGTGGCAGATTTTGACCTGGCAGATGGCACAGAGGAAAAAAATGATGAAGTTCTAACCACTACGCATGCCAAACCTTTTGCTTCCCGTGTAAAATCATTTGACCATACTTTATCGCCATCTGTAGAATGTCAAAGTAATTGCCATGTTGAGTTGAAGCAAACGGATATGCAGAATGAATCTTTTAATGGTGGTTTAGGACAAGCCATTGAATACGACAAACCGACAGCAGCTAAAAAATTGGATTTATCTGGTGATGCAAACAGTGAACAGCTTAACTCACCTTTTGAGGATGCACAGGTCAGCAAACTGACTAAGAGCACATTGAAGGGAAAACCGGCCAGGAGTCCTTGTAATAGATTTCTAGATCTAAGCAGTCCTATCCAAGAAGTAACAACTGTGTTTCCCTCCCTGCAAGAGCCTCCTAGTGATATCCGAGACTTGTCTCACAGGATTAATTCTGATGGACACGGTGTTGATCTTGATAACAATGGCCATCCGGCACTCCAAGTAGCTCAGAGCCCTCTTACCGAAACTGGTATCAAGGTTTCTTCTGGGAAGAAAATGAAAGGCGTTGATCTTGATAACAACTTTCATCCAGCACTACAAGTAGCTCAGAGCCCTCTTACCAAAACTGGTATCGAGGTTTCGTCTGGGAAGAAAAGGAAAGGTGTCGAGTTTTTAAGTGATATCCAAGACTTGTCTCACAGGATTAATTCTGATGGGCGTGGTGTTGATCTTGATAAAAACTGCCATCCGACACTCCAAGTAGCACAGAGCCCTCTTACCAAAACTGGTATCGAGGCTTCTTCTGGGAAGAAATGGGAAAGTGTCGATCTTGATAACAACTGCCATCCGACACTCCAAGTAGCTCGGAGCCCTCTTACGAAAAGTGGTATCGAGGTTTCGTCTGGGAAGAAAAGGAAAGGTGTTGAGTTACCAAGTGATTTCCGAGACTTGTCTCACAGGATTAATTCTGATGGGCATGGTGTTGATCTTGATAACAACTGCCATCCGGCACTCCAAGTAGCTCAGAGCCCTCTTACCAAAAATGGTTTCGAGGTTTCTTCTGAGAAGAAAATGAAGGGTGTCGAATTATTAAGTGATTTCCAAGGCTTGTCTCACAGGAGTAATTCCGATGGCCATGTTGTTGATCTTGATAACAACTGCCATCCAGCACTCCAAATAGCTCAGAGCCCTCTTACCAAAACTGGTATCGAGATTTCTTCTGGGAAGAAAGGGAAAGGTGTCGAGTTATTAAGTGCTGGAGACAATATACAGAAGACAGGGAGGATTGACAGAAGCCCAGAGAAAAGTGGGGATGGAGATCTACAGTTTGTTTTGGAGCAAACTTGTTCTATGGGAAGTGAAAGAGAAAAGTTTGGAGATCAGAAGTGGGATGATTTGGATCATGTTATAAAAACATTCTCAACCAGCACAAAACAATTGCTTTCTCCATCATTTGATAAGCTGAATTTGAGATTGATTGGCACGCTGGAAGATATTTTGGGTCATCTGCAGAAAGTTAAGAAATGGGATATTCTTTCTTCTGAAATTCATTCTCAGAAGAAATTAACGGATCCTCTAAATATTCGCAGACGCAAAAGAATTGTGGAAATGAAAATGTTGCTTTTTAATATAGCATATGAGAAGTCTAAGCTACAATTAATGAATGCTAAGCGTGAGAGATTACTGAAAAAAGTACAACAGCTGAGTTATGGGCTTCAAGAGACCCAGGTGATGAAATGTTCTGCTAAGAGTAGACCGGTTGACATTCAAGCTGATGGTAGTCACATCAATACAAGATTTTTTAATTCCCAAGGAGAATCTCAGGTTTCTTGCAAAAAAGTGATTGAAATGAGGCAAGAGCTTGAAAGTTTGGATCAGAAAGCAAAACCTTTAAGTGAATTTTTTTATAGTTACTGCAAGATGGAAGGGGATCAAAGCTATACCAACGTCATAAAATCTGTTCCTGGTTATTTGGAAAAGATAATGTCTTACAAGTTGGTATTACAAAATTTGAAGTTGTGGGATATTGAAGATTTTGAGCGCAAGGATGACCATCACATGATTATTCTCAACTATTGCGGATATATCATCCAAAGGTTCACAGTAAATGCTGGTCTATCAAGCATTATAGTATCAAATTGCTTGAATGATGCGAATATTGGAAAGACTTATCCGAATATGGATGCTTTCTCTGCATTTGCGTTTGCCTTAAATCCACATACCACTAGCAAACGCACAGGTCGAATCAGTATGGCACAAGAAACACAGATAACAGGTTCACTTCTAAGTAATTTGCTAGATGTGGTTCAGGAGGTTCAGTTAGCTCGGGTAGAGATTAGAAATTTGGTCCAGGCTAAGTTCAATTCTCATTCAGTTCATCAACTTGATTTGCAGCTATCATTCATTGACTTCTGTGGTGGGATGAAGGTGCAAGTGATTCTTGATATGACATGCTTAAAATGCGGGGCCTATCCTGCAGAGGTTCTTCCATCTCAAATATATGATCCTGCTGCTAGTGGGGAACAAAAGGCTCTTCCTTCGTCGCTTGTAGATGAAATAAGAACTGCAGCTGAGAGTGTGAGCGTGGGGTATTCAAGAATTATTAGGCTTTGTAGGCGCATTTCCCAGGCAGTTCAGGGTTGCTCTAAAGGCAGATGA

Protein sequence

>Msa0372130

MKSPPSKSNNTETEEETIAFNRKRARRVSFADNEITSVHIFRPDDDHSSSSSDIPADTLGLFRDDDEELEPRQNPTDDAAEVVDHRNSFLQPIGSPSPGGSSNNADDDSDDDEFRGPVSTDFIKPERLSDSGVSDDITMDSTAFSMHYRSFARSDSGDLKTPTRFDATVTIAGQSSATPGSLMDFTDGDKKTPQSPVVASASGDSDDMSIEGEQGRKSYDYGRLSPKLVAILAQGSKELDGVSRLGSKATQSPNGNDMEVLPDLACSANSPIRRITLDSAIASASESSTKNTKEFVNDATPLACKQLSSAKANRRTPPKMDKGDKLATHSPIADHVEVLPNLECSVNSPVHQITPVASASKSSTKNRELVNDPTPLAFKQLDSSKANRGTPPKLDEGDKLDLAAKYELGFCEVPIKESNSKDRGQVTDSNHKSDQVTGNHPVHEFTPLSLSANKVVFMGSSDSFRCTGNITPPLKQSGLLVPEVHVENSATLLSIRKSISKLKTLKTTPNTSTLKEETDKLKLSFSKYSPGTSFFSERDFENKQVGTVTAPLVEEPFSLTLENNMSRSFINTNNRVVDSLISANVSYNDKNIEPVIGASSLLKTHITRVADFDLADGTEEKNDEVLTTTHAKPFASRVKSFDHTLSPSVECQSNCHVELKQTDMQNESFNGGLGQAIEYDKPTAAKKLDLSGDANSEQLNSPFEDAQVSKLTKSTLKGKPARSPCNRFLDLSSPIQEVTTVFPSLQEPPSDIRDLSHRINSDGHGVDLDNNGHPALQVAQSPLTETGIKVSSGKKMKGVDLDNNFHPALQVAQSPLTKTGIEVSSGKKRKGVEFLSDIQDLSHRINSDGRGVDLDKNCHPTLQVAQSPLTKTGIEASSGKKWESVDLDNNCHPTLQVARSPLTKSGIEVSSGKKRKGVELPSDFRDLSHRINSDGHGVDLDNNCHPALQVAQSPLTKNGFEVSSEKKMKGVELLSDFQGLSHRSNSDGHVVDLDNNCHPALQIAQSPLTKTGIEISSGKKGKGVELLSAGDNIQKTGRIDRSPEKSGDGDLQFVLEQTCSMGSEREKFGDQKWDDLDHVIKTFSTSTKQLLSPSFDKLNLRLIGTLEDILGHLQKVKKWDILSSEIHSQKKLTDPLNIRRRKRIVEMKMLLFNIAYEKSKLQLMNAKRERLLKKVQQLSYGLQETQVMKCSAKSRPVDIQADGSHINTRFFNSQGESQVSCKKVIEMRQELESLDQKAKPLSEFFYSYCKMEGDQSYTNVIKSVPGYLEKIMSYKLVLQNLKLWDIEDFERKDDHHMIILNYCGYIIQRFTVNAGLSSIIVSNCLNDANIGKTYPNMDAFSAFAFALNPHTTSKRTGRISMAQETQITGSLLSNLLDVVQEVQLARVEIRNLVQAKFNSHSVHQLDLQLSFIDFCGGMKVQVILDMTCLKCGAYPAEVLPSQIYDPAASGEQKALPSSLVDEIRTAAESVSVGYSRIIRLCRRISQAVQGCSKGR*