AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1436620


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1436620 MtrunA17_Chr5g0409741 98.540 548 6 1 1 548 1 546 0.0 1090
Msa1436620 MtrunA17_Chr8g0369321 59.506 405 141 6 147 548 1 385 1.87e-158 457
Msa1436620 MtrunA17_Chr8g0369331 56.322 87 37 1 46 131 15 101 5.30e-31 116
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 141 sgRNAs with CRISPR-Local

Find 338 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGAAGCTCTCCGGTGGTTTC+TGG 0.133359 tig0027985:-10301 Msa1436620:CDS
AGAGAAAATAAGAAAGAAAA+AGG 0.179522 tig0027985:+14557 None:intergenic
TGCTGAAAACTTTGAAATTA+TGG 0.208999 tig0027985:+11479 None:intergenic
GGAATTGTTGTGTTGCTATT+TGG 0.217379 tig0027985:-10382 Msa1436620:CDS
CCTTCTAGATTTGAAACTTT+TGG 0.246591 tig0027985:-14315 Msa1436620:CDS
GCTACTGCTGCTGGTTGTTT+TGG 0.254307 tig0027985:-11126 Msa1436620:CDS
GCCATAGCTGCACCAATTCT+TGG 0.258567 tig0027985:-11420 Msa1436620:CDS
AGAGCGATATTATGAGTCTT+TGG 0.272001 tig0027985:-11047 Msa1436620:CDS
TCGCTTCTGTCTTCAGGGTT+TGG 0.279277 tig0027985:-10664 Msa1436620:CDS
TTTAATTTAAGTTGAGGATT+TGG 0.281047 tig0027985:-10007 Msa1436620:three_prime_UTR
TTCAAATATCCTCATGCTAT+TGG 0.284045 tig0027985:-10907 Msa1436620:CDS
GGATATTTGAAGATGGAAAA+AGG 0.290219 tig0027985:+10919 None:intergenic
GCTGCAACTGTGATGAGTTT+TGG 0.299283 tig0027985:+11366 None:intergenic
GTGGTTTAATTTGGCTTGTT+GGG 0.311746 tig0027985:-11008 Msa1436620:CDS
AAGAAGGTGCTTTCTCTATA+TGG 0.325715 tig0027985:-10513 Msa1436620:CDS
CCAAAAGTTTCAAATCTAGA+AGG 0.341466 tig0027985:+14315 None:intergenic
TGCTTTCTTGAGAGTTGTTC+CGG 0.346386 tig0027985:+11194 None:intergenic
ACGGACACAGTCACTGGAAA+TGG 0.347797 tig0027985:-10633 Msa1436620:CDS
GCTGGTGGTGCTGTTGCTGC+AGG 0.363219 tig0027985:-10346 Msa1436620:CDS
CATCGAGTTCGTGTATCATA+TGG 0.363899 tig0027985:+11076 None:intergenic
GCCATTCAGAGCACATCAAC+AGG 0.364880 tig0027985:-10589 Msa1436620:CDS
AGTGGTTTAATTTGGCTTGT+TGG 0.375868 tig0027985:-11009 Msa1436620:CDS
AGCTGCATTGGCGACTGTGC+TGG 0.377357 tig0027985:+11254 None:intergenic
CAGTTGGGCCAGGACGGATT+AGG 0.378121 tig0027985:-10441 Msa1436620:CDS
TCAGGGTTTGGATTCTATTA+CGG 0.378827 tig0027985:-10652 Msa1436620:CDS
TCAACGGTTACCTCTTTCAT+TGG 0.381125 tig0027985:+14525 None:intergenic
GAGCGATATTATGAGTCTTT+GGG 0.383579 tig0027985:-11046 Msa1436620:CDS
ACATCAATTGCTTGGGCTAC+AGG 0.393116 tig0027985:-11447 Msa1436620:CDS
TTGTTGGACAGCTTTGCATT+AGG 0.398635 tig0027985:-10816 Msa1436620:CDS
GAGCTGCAGGTTTGTGTGTC+GGG 0.405501 tig0027985:-10477 Msa1436620:CDS
AACGAGTGGGAAAAGGAAAT+AGG 0.408665 tig0027985:+10765 None:intergenic
AGAGCTAGAGAAGCTTATAA+TGG 0.410545 tig0027985:-14360 Msa1436620:CDS
CGGACACAGTCACTGGAAAT+GGG 0.411485 tig0027985:-10632 Msa1436620:CDS
TCACTTCATGCTACTGCTGC+TGG 0.412960 tig0027985:-11135 Msa1436620:CDS
AGGACAGTGGTAAGAGAAGA+AGG 0.414441 tig0027985:+14606 None:intergenic
CTTTCTCTATATGGTATGCT+TGG 0.415039 tig0027985:-10504 Msa1436620:CDS
GGGTTCACAGTTGGTTCAGT+TGG 0.419215 tig0027985:-10457 Msa1436620:CDS
CTCATCACAGTTGCAGCAAC+AGG 0.423526 tig0027985:-11360 Msa1436620:CDS
CAACGGTTACCTCTTTCATT+GGG 0.429318 tig0027985:+14526 None:intergenic
CTTGAGAGTTGTTCCGGTGA+AGG 0.430405 tig0027985:+11200 None:intergenic
ACAGCTCTGTTGTGTAAGTC+AGG 0.431402 tig0027985:+14393 None:intergenic
CTACTGTTTCACTTCAAGAA+TGG 0.440649 tig0027985:-14200 Msa1436620:CDS
TGGAATGGACATCAATTGCT+TGG 0.448789 tig0027985:-11455 Msa1436620:CDS
CTCATGATCCGCGCCTTCAC+CGG 0.455419 tig0027985:-11213 Msa1436620:CDS
GGTGTTAGATTGTGCTCCAT+CGG 0.459276 tig0027985:-10539 Msa1436620:CDS
CGGTGAAGATGCAGATCGTT+GGG 0.462336 tig0027985:-10696 Msa1436620:CDS
GGTTCACAGTTGGTTCAGTT+GGG 0.464283 tig0027985:-10456 Msa1436620:CDS
GTGTTAGATTGTGCTCCATC+GGG 0.470775 tig0027985:-10538 Msa1436620:CDS
TTTCTTCATCCCAATGAAAG+AGG 0.476943 tig0027985:-14535 Msa1436620:exon
AAGGAAAGGAAGCCAAGAAT+TGG 0.479551 tig0027985:+11408 None:intergenic
TATAATGGTTATGAAGAAGT+TGG 0.482116 tig0027985:-14345 Msa1436620:CDS
TGGCACTCACTGCTCTCAAA+AGG 0.482913 tig0027985:-14163 Msa1436620:CDS
GGAATGGACATCAATTGCTT+GGG 0.484450 tig0027985:-11454 Msa1436620:CDS
AAAACTAATGAATGGATTGA+GGG 0.487114 tig0027985:-10213 Msa1436620:three_prime_UTR
ATCTTAACCACGCGCAGTAA+AGG 0.487567 tig0027985:+10724 None:intergenic
ATAATGAGAGGAAAGACAAC+AGG 0.494062 tig0027985:+14243 None:intergenic
TCTATTACGGACACAGTCAC+TGG 0.495368 tig0027985:-10639 Msa1436620:CDS
GCCAAGAATTGGTGCAGCTA+TGG 0.496623 tig0027985:+11419 None:intergenic
GCTATGATGCCAGCGATGTA+GGG 0.504428 tig0027985:+11279 None:intergenic
ACAATGAAACGAGTGGGAAA+AGG 0.511644 tig0027985:+10758 None:intergenic
TGCTATGATGCCAGCGATGT+AGG 0.512118 tig0027985:+11278 None:intergenic
TGAATGGATTGAGGGATGAA+TGG 0.513135 tig0027985:-10205 Msa1436620:three_prime_UTR
ACAGTTGGTTCAGTTGGGCC+AGG 0.514316 tig0027985:-10451 Msa1436620:CDS
GACACCACCTTCAGCTTCAA+CGG 0.516913 tig0027985:+14509 None:intergenic
AGTAGCATGAAGTGAGAGGC+GGG 0.517268 tig0027985:+11143 None:intergenic
CCCTGTTGATGTGCTCTGAA+TGG 0.519342 tig0027985:+10588 None:intergenic
ATGCTGCGTGTGAGCTGCAT+TGG 0.519683 tig0027985:+11242 None:intergenic
TGTGCTCCATCGGGAAAAGA+AGG 0.520552 tig0027985:-10529 Msa1436620:CDS
GAGGAAAGAAAATAAAAGAG+AGG 0.520821 tig0027985:+14628 None:intergenic
TAGTGTAGTGAGAGTGAGTA+GGG 0.523593 tig0027985:+14706 None:intergenic
ATCTTCATTCCCTACATCGC+TGG 0.524652 tig0027985:-11288 Msa1436620:CDS
TCACTGGAAATGGGGACACT+TGG 0.526145 tig0027985:-10623 Msa1436620:CDS
GGACGGATTAGGACTTCGTT+CGG 0.527260 tig0027985:-10430 Msa1436620:CDS
TTGTGTGTCGGGTTCACAGT+TGG 0.527867 tig0027985:-10466 Msa1436620:CDS
GTAGTGAGAGTGAGTAGGGT+GGG 0.528498 tig0027985:+14710 None:intergenic
CTGGTGGTGCTGTTGCTGCA+GGG 0.528747 tig0027985:-10345 Msa1436620:CDS
AGAGCTGCAGGTTTGTGTGT+CGG 0.529302 tig0027985:-10478 Msa1436620:CDS
CACGGTCATGGTCATGGTCA+AGG 0.531366 tig0027985:-14468 Msa1436620:CDS
GAAGCTGAAGGTGGTGTCCT+TGG 0.531829 tig0027985:-14504 Msa1436620:CDS
TCGGTGAAGATGCAGATCGT+TGG 0.534098 tig0027985:-10697 Msa1436620:CDS
AAATATCCTCATGCTATTGG+AGG 0.534903 tig0027985:-10904 Msa1436620:CDS
TGCCGTCGAGGTGGAAGGAA+AGG 0.538718 tig0027985:+11394 None:intergenic
AGGAAAGAAAATAAAAGAGA+GGG 0.539601 tig0027985:+14629 None:intergenic
GAAGGTGGTGTCCTTGGCCA+TGG 0.540959 tig0027985:-14498 Msa1436620:CDS
GCTGGATTCTTCAAAGTCAC+AGG 0.541392 tig0027985:-11312 Msa1436620:CDS
CGTGTCCATGTCCATGGCCA+AGG 0.543635 tig0027985:+14487 None:intergenic
CGGTGAAGGCGCGGATCATG+AGG 0.544790 tig0027985:+11214 None:intergenic
CGATAATGAGAGAAGCTCTC+CGG 0.546258 tig0027985:-10311 Msa1436620:CDS
TTCCTTTCCTTCCACCTCGA+CGG 0.548596 tig0027985:-11396 Msa1436620:CDS
TGCAGGTATAACAAACTCAC+TGG 0.550122 tig0027985:-11507 Msa1436620:intron
AACGAAGTCCTAATCCGTCC+TGG 0.555456 tig0027985:+10433 None:intergenic
CCTTGCATCATTCACAACAA+TGG 0.558736 tig0027985:-10866 Msa1436620:CDS
TTTGGAAACATCAGTGATGC+TGG 0.565468 tig0027985:-10364 Msa1436620:CDS
GGTGTCCTTGGCCATGGACA+TGG 0.565826 tig0027985:-14492 Msa1436620:CDS
TGTAGTGAGAGTGAGTAGGG+TGG 0.566435 tig0027985:+14709 None:intergenic
GTGACTTTGAAGAATCCAGC+CGG 0.572168 tig0027985:+11315 None:intergenic
GAATGGAACAAAACTCATCC+TGG 0.572504 tig0027985:-14183 Msa1436620:CDS
GCAGCTTCAGAAGTTGCTAA+AGG 0.575778 tig0027985:-14438 Msa1436620:CDS
AGCATGAGGATATTTGAAGA+TGG 0.576279 tig0027985:+10912 None:intergenic
GCATAAAGAAAATGTGTTGG+TGG 0.577106 tig0027985:-9903 Msa1436620:three_prime_UTR
GCTACAACCTTTACTGCGCG+TGG 0.579631 tig0027985:-10731 Msa1436620:CDS
GAAATTGCCGTCGAGGTGGA+AGG 0.582982 tig0027985:+11389 None:intergenic
TATGCTTGGATGAGAGCTGC+AGG 0.590623 tig0027985:-10490 Msa1436620:CDS
CTAGTGTAGTGAGAGTGAGT+AGG 0.590844 tig0027985:+14705 None:intergenic
TTGGTTCAGTTGGGCCAGGA+CGG 0.593555 tig0027985:-10447 Msa1436620:CDS
CAGCAGTAGCATGAAGTGAG+AGG 0.596792 tig0027985:+11139 None:intergenic
CATGGACACGGTCATGGTCA+TGG 0.596886 tig0027985:-14474 Msa1436620:CDS
GCAGCTCACACGCAGCATCT+CGG 0.598823 tig0027985:-11237 Msa1436620:CDS
GAGGTAACCGTTGAAGCTGA+AGG 0.598999 tig0027985:-14516 Msa1436620:CDS
CTTGGCCATGGACATGGACA+CGG 0.602060 tig0027985:-14486 Msa1436620:CDS
ACAGTTGCAGCAACAGGTGT+AGG 0.603510 tig0027985:-11354 Msa1436620:CDS
CATGACCGTGTCCATGTCCA+TGG 0.605139 tig0027985:+14481 None:intergenic
GAGTAATGGTGAGAGGACAG+TGG 0.613645 tig0027985:+14593 None:intergenic
TGACTTTGAAGAATCCAGCC+GGG 0.614345 tig0027985:+11316 None:intergenic
CAGTAGCATGAAGTGAGAGG+CGG 0.616592 tig0027985:+11142 None:intergenic
CATTCTTGAAGTGAAACAGT+AGG 0.619087 tig0027985:+14201 None:intergenic
TAGTGAGAGTGAGTAGGGTG+GGG 0.619947 tig0027985:+14711 None:intergenic
TGAAGCTGACTGATAATGAG+AGG 0.621573 tig0027985:+14231 None:intergenic
TATGCATAAAGAAAATGTGT+TGG 0.624754 tig0027985:-9906 Msa1436620:three_prime_UTR
CATGGACATGGACACGGTCA+TGG 0.624917 tig0027985:-14480 Msa1436620:CDS
GAGTTGTTCCGGTGAAGGCG+CGG 0.634731 tig0027985:+11205 None:intergenic
CAGAACAAAAGCAAATGCAA+TGG 0.636950 tig0027985:+10793 None:intergenic
CGAAAATGAGATCGAATCAG+TGG 0.639897 tig0027985:+10954 None:intergenic
TCAGAATGAGTAATGGTGAG+AGG 0.646029 tig0027985:+14586 None:intergenic
GCAGTGACAATGAAACGAGT+GGG 0.647158 tig0027985:+10752 None:intergenic
GAGGGATGAATGGTGGTGCA+TGG 0.650033 tig0027985:-10195 Msa1436620:three_prime_UTR
GAATCTAAACCAGAAACCAC+CGG 0.650603 tig0027985:+10292 None:intergenic
TTGGGAAATTGCCGTCGAGG+TGG 0.658482 tig0027985:+11385 None:intergenic
GGACACAGTCACTGGAAATG+GGG 0.658492 tig0027985:-10631 Msa1436620:CDS
ACAGTGGTAAGAGAAGAAGG+AGG 0.659884 tig0027985:+14609 None:intergenic
TAATGAGAGAAGCTCTCCGG+TGG 0.661539 tig0027985:-10308 Msa1436620:CDS
AGCAGTGACAATGAAACGAG+TGG 0.669827 tig0027985:+10751 None:intergenic
TCTTGAAGTGAAACAGTAGG+TGG 0.671080 tig0027985:+14204 None:intergenic
CCATTCAGAGCACATCAACA+GGG 0.673190 tig0027985:-10588 Msa1436620:CDS
ATGGATTGAGGGATGAATGG+TGG 0.673864 tig0027985:-10202 Msa1436620:three_prime_UTR
GCAAGACCTCCAATAGCATG+AGG 0.680349 tig0027985:+10898 None:intergenic
CCATTGTTGTGAATGATGCA+AGG 0.682905 tig0027985:+10866 None:intergenic
GTAACCGTTGAAGCTGAAGG+TGG 0.694916 tig0027985:-14513 Msa1436620:CDS
GCGCGTGGTTAAGATGAACT+CGG 0.697491 tig0027985:-10716 Msa1436620:CDS
GGTCATGGTCATGGTCAAGG+TGG 0.721186 tig0027985:-14465 Msa1436620:CDS
GGAAACATCAGTGATGCTGG+TGG 0.756197 tig0027985:-10361 Msa1436620:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTAAAATAATAATTTTTA+TGG + tig0027985:11003-11022 None:intergenic 0.0%
!!! AAATTATTATTTTAATAAAA+TGG - tig0027985:11006-11025 Msa1436620:CDS 0.0%
!! AATATAAAAAACATAACTTA+GGG + tig0027985:10496-10515 None:intergenic 10.0%
!! AAATATAAAAAACATAACTT+AGG + tig0027985:10497-10516 None:intergenic 10.0%
!! AAAATATAAACTTACAAATA+GGG + tig0027985:10559-10578 None:intergenic 10.0%
!! AAAAATATAAACTTACAAAT+AGG + tig0027985:10560-10579 None:intergenic 10.0%
!!! TTTAATAAAAGTATCTATTA+AGG - tig0027985:10746-10765 Msa1436620:CDS 10.0%
!! ATTAAATAAATAATATTGGT+GGG + tig0027985:10949-10968 None:intergenic 10.0%
!! TATTAAATAAATAATATTGG+TGG + tig0027985:10950-10969 None:intergenic 10.0%
!! GTCTATTAAATAAATAATAT+TGG + tig0027985:10953-10972 None:intergenic 10.0%
!! AAAAGGAAAAAAAAAATTAA+GGG + tig0027985:11087-11106 None:intergenic 10.0%
!! AAAAAGGAAAAAAAAAATTA+AGG + tig0027985:11088-11107 None:intergenic 10.0%
!! AAAATTAATTATGTAAAAAG+TGG - tig0027985:12317-12336 Msa1436620:intron 10.0%
!!! TTTTAATAATAGTACCTAAT+AGG - tig0027985:10875-10894 Msa1436620:CDS 15.0%
!!! ATTTTTGTTGTATATATCAA+TGG + tig0027985:11416-11435 None:intergenic 15.0%
!! CAAAATTCTGAATATTTATA+AGG + tig0027985:11630-11649 None:intergenic 15.0%
!!! TGTTGATTCAAAATTTTATA+AGG + tig0027985:11690-11709 None:intergenic 15.0%
!!! AAAGTGTGATTTTATTTTAT+AGG - tig0027985:11818-11837 Msa1436620:intron 15.0%
!!! AAGTGTGATTTTATTTTATA+GGG - tig0027985:11819-11838 Msa1436620:intron 15.0%
!! TGAGGATAATATTAATATTA+GGG + tig0027985:11893-11912 None:intergenic 15.0%
!! TTGAGGATAATATTAATATT+AGG + tig0027985:11894-11913 None:intergenic 15.0%
!! AATATTAATATTATCCTCAA+CGG - tig0027985:11894-11913 Msa1436620:intron 15.0%
!! TGTAATTAAATATTTACACT+AGG - tig0027985:11992-12011 Msa1436620:intron 15.0%
!!! TATGTAAATATTTTTACACT+AGG - tig0027985:12289-12308 Msa1436620:intron 15.0%
!! TGCTATGTAAAAAAAAAAAA+AGG - tig0027985:12360-12379 Msa1436620:intron 15.0%
!! GCTATGTAAAAAAAAAAAAA+GGG - tig0027985:12361-12380 Msa1436620:intron 15.0%
!!! GTAAATTTGAAATTAATTGT+CGG - tig0027985:12408-12427 Msa1436620:intron 15.0%
!!! TTTTTAAACAATTATTGTCT+AGG - tig0027985:12520-12539 Msa1436620:intron 15.0%
!!! TTTTAAACAATTATTGTCTA+GGG - tig0027985:12521-12540 Msa1436620:intron 15.0%
!! TCAAGTACAATAATATAAAA+TGG - tig0027985:12561-12580 Msa1436620:intron 15.0%
!! AAATCAAATAAAAATTCCAA+AGG + tig0027985:12605-12624 None:intergenic 15.0%
!!! TTTCTTTTTAATTTAAGTTG+AGG - tig0027985:14593-14612 Msa1436620:five_prime_UTR 15.0%
!! AGAAAATAAGAAAGAAAAAG+GGG + tig0027985:10050-10069 None:intergenic 20.0%
!! GAGAAAATAAGAAAGAAAAA+GGG + tig0027985:10051-10070 None:intergenic 20.0%
!! AGAGAAAATAAGAAAGAAAA+AGG + tig0027985:10052-10071 None:intergenic 20.0%
!!! TCAATTAGATATTTTGTTAG+AGG + tig0027985:10924-10943 None:intergenic 20.0%
!!! ACAAAAATGACCTTATTTTA+TGG + tig0027985:11204-11223 None:intergenic 20.0%
!!! AAGTGTGATTTTATTTTGTA+GGG + tig0027985:11661-11680 None:intergenic 20.0%
!!! AAAGTGTGATTTTATTTTGT+AGG + tig0027985:11662-11681 None:intergenic 20.0%
!!! GTTGATGGAAAAATTTTATA+GGG + tig0027985:11721-11740 None:intergenic 20.0%
!!! TGTTGATGGAAAAATTTTAT+AGG + tig0027985:11722-11741 None:intergenic 20.0%
!!! AAAATTTCCATCAACATTTT+TGG - tig0027985:11758-11777 Msa1436620:intron 20.0%
!! ACAAAACTGTGAATATTTAT+AGG - tig0027985:11849-11868 Msa1436620:intron 20.0%
!! CAAAACTGTGAATATTTATA+GGG - tig0027985:11850-11869 Msa1436620:intron 20.0%
!! ATATTTATTGGAGATCTTTA+AGG + tig0027985:12230-12249 None:intergenic 20.0%
!! AATATTTACGTAAATTGCTT+TGG - tig0027985:12848-12867 Msa1436620:intron 20.0%
!! ATATTTACGTAAATTGCTTT+GGG - tig0027985:12849-12868 Msa1436620:intron 20.0%
!! AACTATTAAACGATATGAAA+CGG - tig0027985:12872-12891 Msa1436620:intron 20.0%
!! TCATGACAAAATATAAATGT+AGG + tig0027985:12912-12931 None:intergenic 20.0%
!! AAGAAGAAAAAACTAATGAA+TGG - tig0027985:14385-14404 Msa1436620:CDS 20.0%
!!! TTGTATGATTGATTTTAGTT+AGG - tig0027985:14514-14533 Msa1436620:CDS 20.0%
!!! TTTAATTTAAGTTGAGGATT+TGG - tig0027985:14599-14618 Msa1436620:five_prime_UTR 20.0%
! TGTTTAGGAAAAACAACAAA+AGG + tig0027985:9938-9957 None:intergenic 25.0%
! AGGAAAGAAAATAAAAGAGA+GGG + tig0027985:9980-9999 None:intergenic 25.0%
! AAAATAAGAAAGAAAAAGGG+GGG + tig0027985:10048-10067 None:intergenic 25.0%
! GAAAATAAGAAAGAAAAAGG+GGG + tig0027985:10049-10068 None:intergenic 25.0%
! TATAATGGTTATGAAGAAGT+TGG - tig0027985:10261-10280 Msa1436620:exon 25.0%
! TCTTATTAGTGTATTGTCAT+TGG + tig0027985:10783-10802 None:intergenic 25.0%
!!! ATTTTAATAAAATGGTGACG+TGG - tig0027985:11014-11033 Msa1436620:CDS 25.0%
! ATTAAGACCTCATTCTTAAA+TGG + tig0027985:11042-11061 None:intergenic 25.0%
!!! TTTTTTTCCTTTTTCCACAA+TGG - tig0027985:11094-11113 Msa1436620:CDS 25.0%
!! AGTCTTGAACATTTAAGATT+TGG + tig0027985:11136-11155 None:intergenic 25.0%
!! TATAGTTTGCAATCATGAAA+AGG - tig0027985:11261-11280 Msa1436620:CDS 25.0%
!!! TGAAAGTGGTTTTTGAAAAA+AGG + tig0027985:11344-11363 None:intergenic 25.0%
!!! TAATAAATAGGGTTGATGTT+CGG + tig0027985:11375-11394 None:intergenic 25.0%
!! GTATATATCAATGGTTGATA+TGG + tig0027985:11407-11426 None:intergenic 25.0%
!!! CTCTCTCTTGTTTTATATTT+TGG + tig0027985:11454-11473 None:intergenic 25.0%
!! AAATTTTCAAAAGATGACAC+AGG + tig0027985:11564-11583 None:intergenic 25.0%
! AGACACTAGTATTAATATCA+AGG - tig0027985:11586-11605 Msa1436620:intron 25.0%
! GACACTAGTATTAATATCAA+GGG - tig0027985:11587-11606 Msa1436620:intron 25.0%
! TCAAGGGTTAATTAAGTAAA+TGG - tig0027985:11603-11622 Msa1436620:intron 25.0%
!!! GTTGATGGAAATTTTTTACA+GGG + tig0027985:11753-11772 None:intergenic 25.0%
!!! TGTTGATGGAAATTTTTTAC+AGG + tig0027985:11754-11773 None:intergenic 25.0%
!! CATTTTCCTTAACCATTTTA+GGG + tig0027985:11785-11804 None:intergenic 25.0%
!! ACATTTTCCTTAACCATTTT+AGG + tig0027985:11786-11805 None:intergenic 25.0%
! TAAAATACTATAGTCTCAAG+TGG + tig0027985:11947-11966 None:intergenic 25.0%
! ACATGCATTTAATCAAATCA+TGG - tig0027985:12173-12192 Msa1436620:intron 25.0%
! CATGCATTTAATCAAATCAT+GGG - tig0027985:12174-12193 Msa1436620:intron 25.0%
! AGATCTCCAATAAATATGAT+TGG - tig0027985:12233-12252 Msa1436620:intron 25.0%
! ATAGGTCCAATCATATTTAT+TGG + tig0027985:12242-12261 None:intergenic 25.0%
! CATAAAAGTTTCTTACACAT+AGG + tig0027985:12260-12279 None:intergenic 25.0%
!! CTATGTGTAAGAAACTTTTA+TGG - tig0027985:12258-12277 Msa1436620:intron 25.0%
!!! GTAAATATTTTTACACTAGG+TGG - tig0027985:12292-12311 Msa1436620:intron 25.0%
!!! AGTGGTGTATACTTTTTTTA+AGG - tig0027985:12335-12354 Msa1436620:intron 25.0%
! ATATTTCCAAAAGAAACCTT+TGG - tig0027985:12586-12605 Msa1436620:intron 25.0%
!! AAAATTCCAAAGGTTTCTTT+TGG + tig0027985:12595-12614 None:intergenic 25.0%
! GATCAAATCATAATTCTTCT+TGG + tig0027985:12631-12650 None:intergenic 25.0%
!!! TTGATCAATCAATGTTTTGA+AGG - tig0027985:12645-12664 Msa1436620:intron 25.0%
!!! TGATCAATCAATGTTTTGAA+GGG - tig0027985:12646-12665 Msa1436620:intron 25.0%
!! ATTTTGTCATGATGTAACAT+TGG - tig0027985:12920-12939 Msa1436620:intron 25.0%
! ATTAGCACATATGTAAACTT+TGG + tig0027985:13065-13084 None:intergenic 25.0%
!!! TGCTGAAAACTTTGAAATTA+TGG + tig0027985:13130-13149 None:intergenic 25.0%
!! AATTTCAAAGTTTTCAGCAT+TGG - tig0027985:13131-13150 Msa1436620:intron 25.0%
! GATATTTGAAGATGGAAAAA+GGG + tig0027985:13689-13708 None:intergenic 25.0%
!!! AAAAACTAATGAATGGATTG+AGG - tig0027985:14392-14411 Msa1436620:CDS 25.0%
!!! AAAACTAATGAATGGATTGA+GGG - tig0027985:14393-14412 Msa1436620:CDS 25.0%
! TATGCATAAAGAAAATGTGT+TGG - tig0027985:14700-14719 Msa1436620:five_prime_UTR 25.0%
!!! GTTGTGTTTGTGTTTTGTTT+AGG + tig0027985:9953-9972 None:intergenic 30.0%
GAGGAAAGAAAATAAAAGAG+AGG + tig0027985:9981-10000 None:intergenic 30.0%
CCAAAAGTTTCAAATCTAGA+AGG + tig0027985:10294-10313 None:intergenic 30.0%
!! CCTTCTAGATTTGAAACTTT+TGG - tig0027985:10291-10310 Msa1436620:CDS 30.0%
!! CTAGATTTGAAACTTTTGGT+TGG - tig0027985:10295-10314 Msa1436620:CDS 30.0%
CATAACTTAGGGAAAAAATG+TGG + tig0027985:10485-10504 None:intergenic 30.0%
ACAGTGATAGTTTCCTAAAA+AGG - tig0027985:10678-10697 Msa1436620:CDS 30.0%
! CCATTTAAAGAGTCCTTTTT+AGG + tig0027985:10694-10713 None:intergenic 30.0%
CCTAAAAAGGACTCTTTAAA+TGG - tig0027985:10691-10710 Msa1436620:CDS 30.0%
TAAAAGTGATGTGTCAATGT+GGG + tig0027985:10849-10868 None:intergenic 30.0%
TTAAAAGTGATGTGTCAATG+TGG + tig0027985:10850-10869 None:intergenic 30.0%
TCTAATAGTTACTTCCATTG+TGG + tig0027985:11111-11130 None:intergenic 30.0%
! TATTTTATGGAACCCTATGT+TGG + tig0027985:11191-11210 None:intergenic 30.0%
ACATAGGGTTCCATAAAATA+AGG - tig0027985:11191-11210 Msa1436620:CDS 30.0%
TTCATGATTGCAAACTATAG+TGG + tig0027985:11260-11279 None:intergenic 30.0%
TCAACCCTATTTATTAACCT+TGG - tig0027985:11379-11398 Msa1436620:CDS 30.0%
GGTACCAAGGTTAATAAATA+GGG + tig0027985:11386-11405 None:intergenic 30.0%
TGGTACCAAGGTTAATAAAT+AGG + tig0027985:11387-11406 None:intergenic 30.0%
!!! AACATTTTTGGTCCCTAAAA+TGG - tig0027985:11770-11789 Msa1436620:intron 30.0%
AATTAAAGACTTAACCGTTG+AGG + tig0027985:11911-11930 None:intergenic 30.0%
TAAAAACAGCTTCATCTTGT+CGG + tig0027985:12484-12503 None:intergenic 30.0%
GCATATTAACGACCTTTAAA+TGG + tig0027985:12766-12785 None:intergenic 30.0%
! ATTTTGTGCTGTGAAAAACA+CGG - tig0027985:12791-12810 Msa1436620:intron 30.0%
ATTAAACGATATGAAACGGA+TGG - tig0027985:12876-12895 Msa1436620:intron 30.0%
AAAAGTAGATCTTACTGTGT+TGG - tig0027985:12987-13006 Msa1436620:intron 30.0%
TTACATATGTGCTAATGTAC+TGG - tig0027985:13069-13088 Msa1436620:intron 30.0%
! CGATTTTCAGTGGTTTAATT+TGG - tig0027985:13589-13608 Msa1436620:intron 30.0%
GGATATTTGAAGATGGAAAA+AGG + tig0027985:13690-13709 None:intergenic 30.0%
TTCAAATATCCTCATGCTAT+TGG - tig0027985:13699-13718 Msa1436620:intron 30.0%
CATGCAACAGTAGAAAAAAA+GGG - tig0027985:14481-14500 Msa1436620:CDS 30.0%
ATGCAACAGTAGAAAAAAAG+GGG - tig0027985:14482-14501 Msa1436620:CDS 30.0%
TTTCTTCATCCCAATGAAAG+AGG - tig0027985:10071-10090 Msa1436620:three_prime_UTR 35.0%
AGAGCTAGAGAAGCTTATAA+TGG - tig0027985:10246-10265 Msa1436620:three_prime_UTR 35.0%
ATAATGAGAGGAAAGACAAC+AGG + tig0027985:10366-10385 None:intergenic 35.0%
CATTCTTGAAGTGAAACAGT+AGG + tig0027985:10408-10427 None:intergenic 35.0%
CTACTGTTTCACTTCAAGAA+TGG - tig0027985:10406-10425 Msa1436620:CDS 35.0%
TGTGCTAGTGAATTTAGTCA+TGG + tig0027985:10534-10553 None:intergenic 35.0%
!!! GGTTTTTTTGCTAGAGAACT+TGG + tig0027985:10644-10663 None:intergenic 35.0%
AAATAAGTGATGTGTCACGT+GGG + tig0027985:10719-10738 None:intergenic 35.0%
TAAATAAGTGATGTGTCACG+TGG + tig0027985:10720-10739 None:intergenic 35.0%
!! ACTAATAAGAGCATCCACAA+TGG - tig0027985:10793-10812 Msa1436620:CDS 35.0%
! TTTTGTTAGAGGATCTCCAT+TGG + tig0027985:10913-10932 None:intergenic 35.0%
TAAGGGTCTTAAAAGATGCA+AGG + tig0027985:11070-11089 None:intergenic 35.0%
GTTACTTCCATTGTGGAAAA+AGG + tig0027985:11104-11123 None:intergenic 35.0%
! GCAAACTATAGTGGAACAAA+CGG + tig0027985:11251-11270 None:intergenic 35.0%
GGTTTGTAACAAAGCCATAA+AGG + tig0027985:11292-11311 None:intergenic 35.0%
ACCAACTTTACTCTTACTCA+AGG - tig0027985:11309-11328 Msa1436620:CDS 35.0%
CCAACTTTACTCTTACTCAA+GGG - tig0027985:11310-11329 Msa1436620:CDS 35.0%
CAAACATTTGTATACTCCCT+AGG + tig0027985:11523-11542 None:intergenic 35.0%
! GGGAGTATACAAATGTTTGT+CGG - tig0027985:11524-11543 Msa1436620:intron 35.0%
ACAGGGACTAAAAATGTTGA+TGG + tig0027985:11736-11755 None:intergenic 35.0%
TTAGGGACCAAAAATGTTGA+TGG + tig0027985:11768-11787 None:intergenic 35.0%
TTTGGTCCCTAAAATGGTTA+AGG - tig0027985:11776-11795 Msa1436620:intron 35.0%
ATGGTTAAGGAAAATGTCAC+AGG - tig0027985:11789-11808 Msa1436620:intron 35.0%
TGGTTAAGGAAAATGTCACA+GGG - tig0027985:11790-11809 Msa1436620:intron 35.0%
GAAAACAAGCATATTGCACA+TGG + tig0027985:12714-12733 None:intergenic 35.0%
CACCTCAGATATCCATTTAA+AGG - tig0027985:12751-12770 Msa1436620:intron 35.0%
GACCTTTAAATGGATATCTG+AGG + tig0027985:12756-12775 None:intergenic 35.0%
! TTTTGTGCTGTGAAAAACAC+GGG - tig0027985:12792-12811 Msa1436620:intron 35.0%
!! CAAAGTTTTCAGCATTGGAA+TGG - tig0027985:13136-13155 Msa1436620:intron 35.0%
! GCACAGTTTTTCATTAGACA+AGG - tig0027985:13432-13451 Msa1436620:intron 35.0%
AGAGCGATATTATGAGTCTT+TGG - tig0027985:13559-13578 Msa1436620:intron 35.0%
GAGCGATATTATGAGTCTTT+GGG - tig0027985:13560-13579 Msa1436620:intron 35.0%
!! AGTGGTTTAATTTGGCTTGT+TGG - tig0027985:13597-13616 Msa1436620:intron 35.0%
!! GTGGTTTAATTTGGCTTGTT+GGG - tig0027985:13598-13617 Msa1436620:intron 35.0%
AGCATGAGGATATTTGAAGA+TGG + tig0027985:13697-13716 None:intergenic 35.0%
AAATATCCTCATGCTATTGG+AGG - tig0027985:13702-13721 Msa1436620:intron 35.0%
!! CACAACAATGGCTATTTTCA+CGG - tig0027985:13752-13771 Msa1436620:intron 35.0%
!! ACAACAATGGCTATTTTCAC+GGG - tig0027985:13753-13772 Msa1436620:intron 35.0%
CAGAACAAAAGCAAATGCAA+TGG + tig0027985:13816-13835 None:intergenic 35.0%
!! CATTGCATTTGCTTTTGTTC+TGG - tig0027985:13814-13833 Msa1436620:intron 35.0%
TCAGGGTTTGGATTCTATTA+CGG - tig0027985:13954-13973 Msa1436620:intron 35.0%
!! AAGAAGGTGCTTTCTCTATA+TGG - tig0027985:14093-14112 Msa1436620:intron 35.0%
CTTTCTCTATATGGTATGCT+TGG - tig0027985:14102-14121 Msa1436620:intron 35.0%
! GGAATTGTTGTGTTGCTATT+TGG - tig0027985:14224-14243 Msa1436620:CDS 35.0%
GCATGCAACAGTAGAAAAAA+AGG - tig0027985:14480-14499 Msa1436620:CDS 35.0%
TGCAACAGTAGAAAAAAAGG+GGG - tig0027985:14483-14502 Msa1436620:CDS 35.0%
GCATAAAGAAAATGTGTTGG+TGG - tig0027985:14703-14722 Msa1436620:five_prime_UTR 35.0%
TAGTGTAGTGAGAGTGAGTA+GGG + tig0027985:9903-9922 None:intergenic 40.0%
TCAGAATGAGTAATGGTGAG+AGG + tig0027985:10023-10042 None:intergenic 40.0%
CAACGGTTACCTCTTTCATT+GGG + tig0027985:10083-10102 None:intergenic 40.0%
TCAACGGTTACCTCTTTCAT+TGG + tig0027985:10084-10103 None:intergenic 40.0%
! TGAAGCTGACTGATAATGAG+AGG + tig0027985:10378-10397 None:intergenic 40.0%
TCTTGAAGTGAAACAGTAGG+TGG + tig0027985:10405-10424 None:intergenic 40.0%
GAATGGAACAAAACTCATCC+TGG - tig0027985:10423-10442 Msa1436620:CDS 40.0%
! TCACTGTGAATGCTCTAAGT+GGG + tig0027985:10665-10684 None:intergenic 40.0%
! ATCACTGTGAATGCTCTAAG+TGG + tig0027985:10666-10685 None:intergenic 40.0%
AATAAGTGATGTGTCACGTG+GGG + tig0027985:10718-10737 None:intergenic 40.0%
AAAGATGAGAGTCTCCATTG+TGG + tig0027985:10810-10829 None:intergenic 40.0%
CGTGGATCCATTTAAGAATG+AGG - tig0027985:11032-11051 Msa1436620:CDS 40.0%
TTCAAGACTCTCCCAAGATA+AGG - tig0027985:11147-11166 Msa1436620:CDS 40.0%
ACACCATACCTCCTTATCTT+GGG + tig0027985:11161-11180 None:intergenic 40.0%
TGGTGTGACAAATCCAACAT+AGG - tig0027985:11175-11194 Msa1436620:CDS 40.0%
GGTGTGACAAATCCAACATA+GGG - tig0027985:11176-11195 Msa1436620:CDS 40.0%
! ATGAAAAGGCGTGTCCTTTA+TGG - tig0027985:11275-11294 Msa1436620:CDS 40.0%
CCCTTGAGTAAGAGTAAAGT+TGG + tig0027985:11313-11332 None:intergenic 40.0%
!! AAATAGGGTTGATGTTCGGT+GGG + tig0027985:11371-11390 None:intergenic 40.0%
!! TAAATAGGGTTGATGTTCGG+TGG + tig0027985:11372-11391 None:intergenic 40.0%
! CAATGGTTGATATGGTACCA+AGG + tig0027985:11399-11418 None:intergenic 40.0%
ACATTTGTATACTCCCTAGG+AGG + tig0027985:11520-11539 None:intergenic 40.0%
AAAGATGACACAGGAGTTTC+AGG + tig0027985:11555-11574 None:intergenic 40.0%
CAAGCATATTGCACATGGAA+AGG + tig0027985:12709-12728 None:intergenic 40.0%
! AATGTACTGGTGAATTGTGC+AGG - tig0027985:13082-13101 Msa1436620:intron 40.0%
TGCAGGTATAACAAACTCAC+TGG - tig0027985:13099-13118 Msa1436620:intron 40.0%
TGGAATGGACATCAATTGCT+TGG - tig0027985:13151-13170 Msa1436620:intron 40.0%
GGAATGGACATCAATTGCTT+GGG - tig0027985:13152-13171 Msa1436620:intron 40.0%
AAGGAAAGGAAGCCAAGAAT+TGG + tig0027985:13201-13220 None:intergenic 40.0%
! CTGCAACTGTGATGAGTTTT+GGG + tig0027985:13242-13261 None:intergenic 40.0%
TGCTTTCTTGAGAGTTGTTC+CGG + tig0027985:13415-13434 None:intergenic 40.0%
CATCGAGTTCGTGTATCATA+TGG + tig0027985:13533-13552 None:intergenic 40.0%
!! TGGGTTGTTTCGATTTTCAG+TGG - tig0027985:13579-13598 Msa1436620:intron 40.0%
CGAAAATGAGATCGAATCAG+TGG + tig0027985:13655-13674 None:intergenic 40.0%
! ATTCGATCTCATTTTCGTCG+AGG - tig0027985:13658-13677 Msa1436620:intron 40.0%
CCATTGTTGTGAATGATGCA+AGG + tig0027985:13743-13762 None:intergenic 40.0%
CCTTGCATCATTCACAACAA+TGG - tig0027985:13740-13759 Msa1436620:intron 40.0%
! GGTGGTGTGATTTTCATTGT+TGG - tig0027985:13774-13793 Msa1436620:intron 40.0%
TTGTTGGACAGCTTTGCATT+AGG - tig0027985:13790-13809 Msa1436620:intron 40.0%
AACGAGTGGGAAAAGGAAAT+AGG + tig0027985:13844-13863 None:intergenic 40.0%
ACAATGAAACGAGTGGGAAA+AGG + tig0027985:13851-13870 None:intergenic 40.0%
! TTTTTCTCGCTTCTGTCTTC+AGG - tig0027985:13936-13955 Msa1436620:intron 40.0%
! TTTTCTCGCTTCTGTCTTCA+GGG - tig0027985:13937-13956 Msa1436620:intron 40.0%
!! GATTTTGCACGCTTTTGGAA+GGG - tig0027985:14040-14059 Msa1436620:intron 40.0%
TTTGGAAACATCAGTGATGC+TGG - tig0027985:14242-14261 Msa1436620:CDS 40.0%
GAATCTAAACCAGAAACCAC+CGG + tig0027985:14317-14336 None:intergenic 40.0%
!! TGAATGGATTGAGGGATGAA+TGG - tig0027985:14401-14420 Msa1436620:CDS 40.0%
GCAACAGTAGAAAAAAAGGG+GGG - tig0027985:14484-14503 Msa1436620:CDS 40.0%
CAACAGTAGAAAAAAAGGGG+GGG - tig0027985:14485-14504 Msa1436620:CDS 40.0%
CTAGTGTAGTGAGAGTGAGT+AGG + tig0027985:9904-9923 None:intergenic 45.0%
ACAGTGGTAAGAGAAGAAGG+AGG + tig0027985:10000-10019 None:intergenic 45.0%
AGGACAGTGGTAAGAGAAGA+AGG + tig0027985:10003-10022 None:intergenic 45.0%
GCAGCTTCAGAAGTTGCTAA+AGG - tig0027985:10168-10187 Msa1436620:three_prime_UTR 45.0%
ACAGCTCTGTTGTGTAAGTC+AGG + tig0027985:10216-10235 None:intergenic 45.0%
GGAGTGGTTGAGTACCTATT+AGG + tig0027985:10892-10911 None:intergenic 45.0%
TAGGTACTCAACCACTCCAA+TGG - tig0027985:10894-10913 Msa1436620:CDS 45.0%
TTAGAGGATCTCCATTGGAG+TGG + tig0027985:10908-10927 None:intergenic 45.0%
AAGACTCTCCCAAGATAAGG+AGG - tig0027985:11150-11169 Msa1436620:CDS 45.0%
TCTCCCAAGATAAGGAGGTA+TGG - tig0027985:11155-11174 Msa1436620:CDS 45.0%
CACACCATACCTCCTTATCT+TGG + tig0027985:11162-11181 None:intergenic 45.0%
! GTTCGGTGGGTAAATGAAAG+TGG + tig0027985:11358-11377 None:intergenic 45.0%
TGATCTATGCTCACCTCCTA+GGG - tig0027985:11504-11523 Msa1436620:CDS 45.0%
CGGCACTATACATTGTCGTT+AGG + tig0027985:12464-12483 None:intergenic 45.0%
ACATCAATTGCTTGGGCTAC+AGG - tig0027985:13159-13178 Msa1436620:intron 45.0%
! GCTGCAACTGTGATGAGTTT+TGG + tig0027985:13243-13262 None:intergenic 45.0%
! AGGAGTTTTCTTCTGTCTCC+CGG - tig0027985:13272-13291 Msa1436620:intron 45.0%
! TGACTTTGAAGAATCCAGCC+GGG + tig0027985:13293-13312 None:intergenic 45.0%
! GTGACTTTGAAGAATCCAGC+CGG + tig0027985:13294-13313 None:intergenic 45.0%
GCTGGATTCTTCAAAGTCAC+AGG - tig0027985:13294-13313 Msa1436620:intron 45.0%
ATCTTCATTCCCTACATCGC+TGG - tig0027985:13318-13337 Msa1436620:intron 45.0%
!! ACAATGGCTATTTTCACGGG+TGG - tig0027985:13756-13775 Msa1436620:intron 45.0%
GCAGTGACAATGAAACGAGT+GGG + tig0027985:13857-13876 None:intergenic 45.0%
AGCAGTGACAATGAAACGAG+TGG + tig0027985:13858-13877 None:intergenic 45.0%
ATCTTAACCACGCGCAGTAA+AGG + tig0027985:13885-13904 None:intergenic 45.0%
TCTATTACGGACACAGTCAC+TGG - tig0027985:13967-13986 Msa1436620:intron 45.0%
CCATTCAGAGCACATCAACA+GGG - tig0027985:14018-14037 Msa1436620:intron 45.0%
! ACAGGGATTTTGCACGCTTT+TGG - tig0027985:14035-14054 Msa1436620:intron 45.0%
! GGATTTTGCACGCTTTTGGA+AGG - tig0027985:14039-14058 Msa1436620:intron 45.0%
GGTGTTAGATTGTGCTCCAT+CGG - tig0027985:14067-14086 Msa1436620:intron 45.0%
GTGTTAGATTGTGCTCCATC+GGG - tig0027985:14068-14087 Msa1436620:intron 45.0%
!! AAAGCACCTTCTTTTCCCGA+TGG + tig0027985:14086-14105 None:intergenic 45.0%
! GGTTCACAGTTGGTTCAGTT+GGG - tig0027985:14150-14169 Msa1436620:intron 45.0%
! GCTTTTTGCACTGCTATTGC+TGG - tig0027985:14203-14222 Msa1436620:CDS 45.0%
CGATAATGAGAGAAGCTCTC+CGG - tig0027985:14295-14314 Msa1436620:CDS 45.0%
! ATGGATTGAGGGATGAATGG+TGG - tig0027985:14404-14423 Msa1436620:CDS 45.0%
!! ACAAAAATTAAATTTAATAT+TGG - tig0027985:11428-11447 Msa1436620:CDS 5.0%
!!! ATTAATCTTTTTTTTTATTT+TGG + tig0027985:12129-12148 None:intergenic 5.0%
GTAGTGAGAGTGAGTAGGGT+GGG + tig0027985:9899-9918 None:intergenic 50.0%
TGTAGTGAGAGTGAGTAGGG+TGG + tig0027985:9900-9919 None:intergenic 50.0%
GAGTAATGGTGAGAGGACAG+TGG + tig0027985:10016-10035 None:intergenic 50.0%
!! GGGGGTGTCAGAATGAGTAA+TGG + tig0027985:10030-10049 None:intergenic 50.0%
GAGGTAACCGTTGAAGCTGA+AGG - tig0027985:10090-10109 Msa1436620:three_prime_UTR 50.0%
GTAACCGTTGAAGCTGAAGG+TGG - tig0027985:10093-10112 Msa1436620:three_prime_UTR 50.0%
GACACCACCTTCAGCTTCAA+CGG + tig0027985:10100-10119 None:intergenic 50.0%
!! TTTTGAGAGCAGTGAGTGCC+AGG + tig0027985:10444-10463 None:intergenic 50.0%
TGGCACTCACTGCTCTCAAA+AGG - tig0027985:10443-10462 Msa1436620:CDS 50.0%
GTGATCTATGCTCACCTCCT+AGG - tig0027985:11503-11522 Msa1436620:CDS 50.0%
TGTCGGCAGTTAGCACATCT+TGG - tig0027985:12425-12444 Msa1436620:intron 50.0%
GCCATAGCTGCACCAATTCT+TGG - tig0027985:13186-13205 Msa1436620:intron 50.0%
GCCAAGAATTGGTGCAGCTA+TGG + tig0027985:13190-13209 None:intergenic 50.0%
TTCCTTTCCTTCCACCTCGA+CGG - tig0027985:13210-13229 Msa1436620:intron 50.0%
!!! GTTTTGGGAAATTGCCGTCG+AGG + tig0027985:13227-13246 None:intergenic 50.0%
CTCATCACAGTTGCAGCAAC+AGG - tig0027985:13246-13265 Msa1436620:intron 50.0%
ACAGTTGCAGCAACAGGTGT+AGG - tig0027985:13252-13271 Msa1436620:intron 50.0%
GCTATGATGCCAGCGATGTA+GGG + tig0027985:13330-13349 None:intergenic 50.0%
TGCTATGATGCCAGCGATGT+AGG + tig0027985:13331-13350 None:intergenic 50.0%
CTTGAGAGTTGTTCCGGTGA+AGG + tig0027985:13409-13428 None:intergenic 50.0%
AGTAGCATGAAGTGAGAGGC+GGG + tig0027985:13466-13485 None:intergenic 50.0%
CAGTAGCATGAAGTGAGAGG+CGG + tig0027985:13467-13486 None:intergenic 50.0%
CAGCAGTAGCATGAAGTGAG+AGG + tig0027985:13470-13489 None:intergenic 50.0%
TCACTTCATGCTACTGCTGC+TGG - tig0027985:13471-13490 Msa1436620:intron 50.0%
!! GCTACTGCTGCTGGTTGTTT+TGG - tig0027985:13480-13499 Msa1436620:intron 50.0%
!!! ACTGCTGCTGGTTGTTTTGG+TGG - tig0027985:13483-13502 Msa1436620:intron 50.0%
GCAAGACCTCCAATAGCATG+AGG + tig0027985:13711-13730 None:intergenic 50.0%
GCGCGTGGTTAAGATGAACT+CGG - tig0027985:13890-13909 Msa1436620:intron 50.0%
TCGGTGAAGATGCAGATCGT+TGG - tig0027985:13909-13928 Msa1436620:intron 50.0%
CGGTGAAGATGCAGATCGTT+GGG - tig0027985:13910-13929 Msa1436620:intron 50.0%
TCGCTTCTGTCTTCAGGGTT+TGG - tig0027985:13942-13961 Msa1436620:intron 50.0%
ACGGACACAGTCACTGGAAA+TGG - tig0027985:13973-13992 Msa1436620:intron 50.0%
CGGACACAGTCACTGGAAAT+GGG - tig0027985:13974-13993 Msa1436620:intron 50.0%
GGACACAGTCACTGGAAATG+GGG - tig0027985:13975-13994 Msa1436620:intron 50.0%
TCACTGGAAATGGGGACACT+TGG - tig0027985:13983-14002 Msa1436620:intron 50.0%
GCCATTCAGAGCACATCAAC+AGG - tig0027985:14017-14036 Msa1436620:intron 50.0%
! CCCTGTTGATGTGCTCTGAA+TGG + tig0027985:14021-14040 None:intergenic 50.0%
!! GCACGCTTTTGGAAGGGTTT+TGG - tig0027985:14046-14065 Msa1436620:intron 50.0%
TGTGCTCCATCGGGAAAAGA+AGG - tig0027985:14077-14096 Msa1436620:intron 50.0%
TATGCTTGGATGAGAGCTGC+AGG - tig0027985:14116-14135 Msa1436620:intron 50.0%
AGAGCTGCAGGTTTGTGTGT+CGG - tig0027985:14128-14147 Msa1436620:intron 50.0%
TTGTGTGTCGGGTTCACAGT+TGG - tig0027985:14140-14159 Msa1436620:intron 50.0%
! GGGTTCACAGTTGGTTCAGT+TGG - tig0027985:14149-14168 Msa1436620:intron 50.0%
AACGAAGTCCTAATCCGTCC+TGG + tig0027985:14176-14195 None:intergenic 50.0%
!! GGACGGATTAGGACTTCGTT+CGG - tig0027985:14176-14195 Msa1436620:CDS 50.0%
GGAAACATCAGTGATGCTGG+TGG - tig0027985:14245-14264 Msa1436620:CDS 50.0%
TAATGAGAGAAGCTCTCCGG+TGG - tig0027985:14298-14317 Msa1436620:CDS 50.0%
GAAGCTGAAGGTGGTGTCCT+TGG - tig0027985:10102-10121 Msa1436620:three_prime_UTR 55.0%
CTTGGCCATGGACATGGACA+CGG - tig0027985:10120-10139 Msa1436620:three_prime_UTR 55.0%
CATGACCGTGTCCATGTCCA+TGG + tig0027985:10128-10147 None:intergenic 55.0%
CATGGACATGGACACGGTCA+TGG - tig0027985:10126-10145 Msa1436620:three_prime_UTR 55.0%
CATGGACACGGTCATGGTCA+TGG - tig0027985:10132-10151 Msa1436620:three_prime_UTR 55.0%
CACGGTCATGGTCATGGTCA+AGG - tig0027985:10138-10157 Msa1436620:three_prime_UTR 55.0%
GGTCATGGTCATGGTCAAGG+TGG - tig0027985:10141-10160 Msa1436620:three_prime_UTR 55.0%
GAAATTGCCGTCGAGGTGGA+AGG + tig0027985:13220-13239 None:intergenic 55.0%
TTGGGAAATTGCCGTCGAGG+TGG + tig0027985:13224-13243 None:intergenic 55.0%
! GTTTTCTTCTGTCTCCCGGC+TGG - tig0027985:13276-13295 Msa1436620:intron 55.0%
ATGCTGCGTGTGAGCTGCAT+TGG + tig0027985:13367-13386 None:intergenic 55.0%
GCTACAACCTTTACTGCGCG+TGG - tig0027985:13875-13894 Msa1436620:intron 55.0%
GAGCTGCAGGTTTGTGTGTC+GGG - tig0027985:14129-14148 Msa1436620:intron 55.0%
! ACAGTTGGTTCAGTTGGGCC+AGG - tig0027985:14155-14174 Msa1436620:CDS 55.0%
TTGGTTCAGTTGGGCCAGGA+CGG - tig0027985:14159-14178 Msa1436620:CDS 55.0%
AGAAGCTCTCCGGTGGTTTC+TGG - tig0027985:14305-14324 Msa1436620:CDS 55.0%
! GAGGGATGAATGGTGGTGCA+TGG - tig0027985:14411-14430 Msa1436620:CDS 55.0%
GAAGGTGGTGTCCTTGGCCA+TGG - tig0027985:10108-10127 Msa1436620:three_prime_UTR 60.0%
GGTGTCCTTGGCCATGGACA+TGG - tig0027985:10114-10133 Msa1436620:three_prime_UTR 60.0%
CGTGTCCATGTCCATGGCCA+AGG + tig0027985:10122-10141 None:intergenic 60.0%
TGCCGTCGAGGTGGAAGGAA+AGG + tig0027985:13215-13234 None:intergenic 60.0%
! AGCTGCATTGGCGACTGTGC+TGG + tig0027985:13355-13374 None:intergenic 60.0%
GCAGCTCACACGCAGCATCT+CGG - tig0027985:13369-13388 Msa1436620:intron 60.0%
CTCATGATCCGCGCCTTCAC+CGG - tig0027985:13393-13412 Msa1436620:intron 60.0%
GAGTTGTTCCGGTGAAGGCG+CGG + tig0027985:13404-13423 None:intergenic 60.0%
! CAGTTGGGCCAGGACGGATT+AGG - tig0027985:14165-14184 Msa1436620:CDS 60.0%
!! CTGGTGGTGCTGTTGCTGCA+GGG - tig0027985:14261-14280 Msa1436620:CDS 60.0%
! CGGTGAAGGCGCGGATCATG+AGG + tig0027985:13395-13414 None:intergenic 65.0%
!! GCTGGTGGTGCTGTTGCTGC+AGG - tig0027985:14260-14279 Msa1436620:CDS 65.0%
Chromosome Type Strat End Strand Name
tig0027985 gene 9896 14732 9896 ID=Msa1436620;Name=Msa1436620
tig0027985 mRNA 9896 14732 9896 ID=Msa1436620-mRNA-1;Parent=Msa1436620;Name=Msa1436620-mRNA-1;_AED=0.00;_eAED=0.00;_QI=188|1|1|1|1|1|2|374|548
tig0027985 exon 9896 11524 9896 ID=Msa1436620-mRNA-1:exon:10309;Parent=Msa1436620-mRNA-1
tig0027985 exon 14153 14732 14153 ID=Msa1436620-mRNA-1:exon:10308;Parent=Msa1436620-mRNA-1
tig0027985 five_prime_UTR 14545 14732 14545 ID=Msa1436620-mRNA-1:five_prime_utr;Parent=Msa1436620-mRNA-1
tig0027985 CDS 14153 14544 14153 ID=Msa1436620-mRNA-1:cds;Parent=Msa1436620-mRNA-1
tig0027985 CDS 10270 11524 10270 ID=Msa1436620-mRNA-1:cds;Parent=Msa1436620-mRNA-1
tig0027985 three_prime_UTR 9896 10269 9896 ID=Msa1436620-mRNA-1:three_prime_utr;Parent=Msa1436620-mRNA-1
Gene Sequence

>Msa1436620

ATGAAAGAGGTAACCGTTGAAGCTGAAGGTGGTGTCCTTGGCCATGGACATGGACACGGTCATGGTCATGGTCAAGGTGGTGTAGCAGCTTCAGAAGTTGCTAAAGGTAACAACAACAATACTACTAGACCTGACTTACACAACAGAGCTGTGAAAATTTTGAGAGCTAGAGAAGCTTATAATGGTTATGAAGAAGTTGGTGAAAAACCTTCTAGATTTGAAACTTTTGGTTGGTATCTTTATGAGTTTTGCTTCTACTTTGTTCAAACTGTACTTGTTCCTGTTGTCTTTCCTCTCATTATCAGTCAGCTTCAAAGTCCACCTACTGTTTCACTTCAAGAATGGAACAAAACTCATCCTGGCACTCACTGCTCTCAAAAGGAATTTCATTTGTATAACAAACTCACTGGACACACCATAATTTCAAAGTTTTCAGCATTGGAATGGACATCAATTGCTTGGGCTACAGGTCTAGCCATAGCTGCACCAATTCTTGGCTTCCTTTCCTTCCACCTCGACGGCAATTTCCCAAAACTCATCACAGTTGCAGCAACAGGTGTAGGAGTTTTCTTCTGTCTCCCGGCTGGATTCTTCAAAGTCACAGGCATCTTCATTCCCTACATCGCTGGCATCATAGCAGCCAGCACAGTCGCCAATGCAGCTCACACGCAGCATCTCGGCCTCATGATCCGCGCCTTCACCGGAACAACTCTCAAGAAAGCACAGTTTTTCATTAGACAAGGTGTTTCATCCCGCCTCTCACTTCATGCTACTGCTGCTGGTTGTTTTGGTGGTGCTTTGATTTCAGCTTTCACTTACCATATGATACACGAACTCGATGAAAATAAGAGCGATATTATGAGTCTTTGGGTTGTTTCGATTTTCAGTGGTTTAATTTGGCTTGTTGGGATCTTGCATTTAGCTACAGCTACAAGTAGAACCACTGATTCGATCTCATTTTCGTCGAGGCTACACCCTTTTTCCATCTTCAAATATCCTCATGCTATTGGAGGTCTTGCTAGTGTTTTCCTTGCATCATTCACAACAATGGCTATTTTCACGGGTGGTGTGATTTTCATTGTTGGACAGCTTTGCATTAGGCCATTGCATTTGCTTTTGTTCTGGTTAACCTATTTCCTTTTCCCACTCGTTTCATTGTCACTGCTACAACCTTTACTGCGCGTGGTTAAGATGAACTCGGTGAAGATGCAGATCGTTGGGTTCTTTTTCTCGCTTCTGTCTTCAGGGTTTGGATTCTATTACGGACACAGTCACTGGAAATGGGGACACTTGGTTCTTTTCGCTGCCATTCAGAGCACATCAACAGGGATTTTGCACGCTTTTGGAAGGGTTTTGGTGTTAGATTGTGCTCCATCGGGAAAAGAAGGTGCTTTCTCTATATGGTATGCTTGGATGAGAGCTGCAGGTTTGTGTGTCGGGTTCACAGTTGGTTCAGTTGGGCCAGGACGGATTAGGACTTCGTTCGGAGTTGCTTTTTGCACTGCTATTGCTGGAATTGTTGTGTTGCTATTTGGAAACATCAGTGATGCTGGTGGTGCTGTTGCTGCAGGGAATGTAAGTGACGATAATGAGAGAAGCTCTCCGGTGGTTTCTGGTTTAGATTCGAAAGAAGCTGCTCGAGTTTGA

Protein sequence

>Msa1436620

MKEVTVEAEGGVLGHGHGHGHGHGQGGVAASEVAKGNNNNTTRPDLHNRAVKILRAREAYNGYEEVGEKPSRFETFGWYLYEFCFYFVQTVLVPVVFPLIISQLQSPPTVSLQEWNKTHPGTHCSQKEFHLYNKLTGHTIISKFSALEWTSIAWATGLAIAAPILGFLSFHLDGNFPKLITVAATGVGVFFCLPAGFFKVTGIFIPYIAGIIAASTVANAAHTQHLGLMIRAFTGTTLKKAQFFIRQGVSSRLSLHATAAGCFGGALISAFTYHMIHELDENKSDIMSLWVVSIFSGLIWLVGILHLATATSRTTDSISFSSRLHPFSIFKYPHAIGGLASVFLASFTTMAIFTGGVIFIVGQLCIRPLHLLLFWLTYFLFPLVSLSLLQPLLRVVKMNSVKMQIVGFFFSLLSSGFGFYYGHSHWKWGHLVLFAAIQSTSTGILHAFGRVLVLDCAPSGKEGAFSIWYAWMRAAGLCVGFTVGSVGPGRIRTSFGVAFCTAIAGIVVLLFGNISDAGGAVAAGNVSDDNERSSPVVSGLDSKEAARV*