AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1201780


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1201780 MtrunA17_Chr8g0371981 96.793 343 10 1 1 343 1 342 0.0 668
Msa1201780 MtrunA17_Chr5g0405401 49.288 351 98 17 1 339 1 283 5.28e-75 233
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1201780 AT5G66230.1 48.451 355 140 12 1 338 1 329 9.69e-81 249
Msa1201780 AT5G66230.2 47.887 355 142 12 1 338 217 545 1.71e-76 245
Msa1201780 AT3G51230.1 47.291 203 94 7 1 202 1 191 2.84e-43 148

Find 93 sgRNAs with CRISPR-Local

Find 236 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCTTAATTGACAAGATTCT+TGG 0.223838 8_1:+55055943 Msa1201780:three_prime_UTR
GGGATTTGAGGGGTGTTTGC+AGG 0.223932 8_1:-55055007 None:intergenic
AAACGAATATGCTTTCCTTT+TGG 0.268585 8_1:-55055744 None:intergenic
GAGGGGTGTTTGCAGGAGTT+GGG 0.290208 8_1:-55055000 None:intergenic
AATTTCTAAAATGCAACTTT+TGG 0.321476 8_1:+55056049 Msa1201780:three_prime_UTR
TGAGGGGTGTTTGCAGGAGT+TGG 0.326042 8_1:-55055001 None:intergenic
ATGATAGCAATTCTAAATAA+TGG 0.343856 8_1:+55055996 Msa1201780:three_prime_UTR
CTTCTTCAACCTTCTGCAAA+AGG 0.349617 8_1:-55054901 None:intergenic
TCCTAGCACTAGCTCCATTC+AGG 0.359727 8_1:-55055873 None:intergenic
AGGTGTGAATGAAGGAAATA+TGG 0.365223 8_1:+55055593 Msa1201780:CDS
GTGAAGAAGACTCCTGGTTC+TGG 0.367751 8_1:+55054848 Msa1201780:CDS
AAGATGATGGTGATTCAATT+TGG 0.378688 8_1:+55055400 Msa1201780:CDS
AATATGGTTCCAAAGTTTGC+TGG 0.398542 8_1:+55055609 Msa1201780:CDS
GAGCATTCAACGACATGTTA+TGG 0.405241 8_1:-55055896 None:intergenic
TTCAAAATCAAGACAAAGAA+AGG 0.413338 8_1:+55054700 Msa1201780:CDS
TTCTGGTGAAGCTTTGTTGA+GGG 0.417455 8_1:+55054865 Msa1201780:CDS
TGTGAACGTTGGGGATTTGA+GGG 0.420100 8_1:-55055018 None:intergenic
AATGAAAGAAACAATATCAT+TGG 0.420968 8_1:-55055918 None:intergenic
GTATGTTTCCCAGCAAACTT+TGG 0.422670 8_1:-55055618 None:intergenic
GGCATAATCATAAGGTAGAT+TGG 0.423121 8_1:+55056017 Msa1201780:three_prime_UTR
AAAGGGGCAAGCACAACAAC+AGG 0.423276 8_1:+55054718 Msa1201780:CDS
TTGTGAACGTTGGGGATTTG+AGG 0.426725 8_1:-55055019 None:intergenic
AGATATAATCATAAACTTGC+TGG 0.427259 8_1:-55055973 None:intergenic
GCCAACGATGGGAGAATCAT+TGG 0.432716 8_1:-55054765 None:intergenic
TTCAGGGAAGATCGAAGATT+CGG 0.443167 8_1:+55054667 Msa1201780:intron
AAGAATTACTCACTTGAAGA+TGG 0.444866 8_1:-55054407 None:intergenic
AGGGGTGTTTGCAGGAGTTG+GGG 0.457618 8_1:-55054999 None:intergenic
GTCGAGTATTGCAAAGCAAA+GGG 0.459032 8_1:+55054817 Msa1201780:CDS
GTGGCAATGTTGTGAACGTT+GGG 0.459261 8_1:-55055028 None:intergenic
TTCTTCAACCTTCTGCAAAA+GGG 0.469104 8_1:-55054900 None:intergenic
TGAGGAGGATGATTACTATG+AGG 0.469908 8_1:+55055494 Msa1201780:CDS
TGAGGTAGAAGAAGATGAGG+AGG 0.471514 8_1:+55055479 Msa1201780:CDS
TAAATAATGGCATAATCATA+AGG 0.474806 8_1:+55056009 Msa1201780:three_prime_UTR
AGCTGAGGTAGAAGAAGATG+AGG 0.475342 8_1:+55055476 Msa1201780:CDS
TCAAGAACAACTCATTCCTC+AGG 0.485642 8_1:+55055084 Msa1201780:CDS
AACGTTCACAACATTGCCAC+TGG 0.487856 8_1:+55055031 Msa1201780:CDS
CTTTCAATCACTTTCAACAA+TGG 0.487904 8_1:+55054307 Msa1201780:exon
GAGTTAACAAATTGAAGAAA+AGG 0.490460 8_1:-55054959 None:intergenic
AAGGGGTTGCCAACTCCAAA+AGG 0.491437 8_1:+55055729 Msa1201780:CDS
CCCATCGTTGGCCTTGCGAA+TGG 0.492124 8_1:+55054776 Msa1201780:CDS
GAAGAAGAAGAGTATGCTGA+TGG 0.492765 8_1:+55055528 Msa1201780:CDS
TTGCAAAGCAAAGGGGAAGC+CGG 0.496543 8_1:+55054825 Msa1201780:CDS
TGTTCTTGAACAACAGAAGA+AGG 0.497351 8_1:-55055070 None:intergenic
TGAAGATGAGATTGTGGAAG+AGG 0.502605 8_1:+55055662 Msa1201780:CDS
GAGGAGGATGATTACTATGA+GGG 0.504175 8_1:+55055495 Msa1201780:CDS
ACTCTTCTTGCGGTGGATGA+AGG 0.505990 8_1:-55054335 None:intergenic
GAAGAAGAGTATGCTGATGG+AGG 0.507800 8_1:+55055531 Msa1201780:CDS
TCAAAATCAAGACAAAGAAA+GGG 0.511275 8_1:+55054701 Msa1201780:CDS
TGCAAAGCAAAGGGGAAGCC+GGG 0.515030 8_1:+55054826 Msa1201780:CDS
ATATGGTTCCAAAGTTTGCT+GGG 0.515746 8_1:+55055610 Msa1201780:CDS
GTTGGGGCAAGAAGTTGCAT+TGG 0.524680 8_1:-55054983 None:intergenic
GTTCTGGTGAAGCTTTGTTG+AGG 0.538552 8_1:+55054864 Msa1201780:CDS
AGATGGGATGTTGTTGACGT+TGG 0.543299 8_1:-55054390 None:intergenic
GCCATTCGCAAGGCCAACGA+TGG 0.543905 8_1:-55054777 None:intergenic
AGCCGGGTGAAGAAGACTCC+TGG 0.545405 8_1:+55054842 Msa1201780:CDS
CTACTTGATGAACTGTGTGA+GGG 0.549352 8_1:+55055558 Msa1201780:CDS
AAGAAGAGTATGCTGATGGA+GGG 0.550657 8_1:+55055532 Msa1201780:CDS
GTTACAGAAGACTCTAAGAT+GGG 0.553091 8_1:+55055369 Msa1201780:CDS
TTTCGATCTCGCCATTCGCA+AGG 0.554106 8_1:-55054787 None:intergenic
GCTACTTGATGAACTGTGTG+AGG 0.555463 8_1:+55055557 Msa1201780:CDS
TCCAATGATTCTCCCATCGT+TGG 0.556712 8_1:+55054764 Msa1201780:CDS
GGTTACAGAAGACTCTAAGA+TGG 0.557417 8_1:+55055368 Msa1201780:CDS
AACAAAGCTTCACCAGAACC+AGG 0.562051 8_1:-55054860 None:intergenic
AGCAACATAGGTGTGAATGA+AGG 0.563852 8_1:+55055585 Msa1201780:CDS
ACCTGAATGGAGCTAGTGCT+AGG 0.564294 8_1:+55055872 Msa1201780:three_prime_UTR
TCTTGTGACTCTTCTTGCGG+TGG 0.565083 8_1:-55054342 None:intergenic
AGAATTACTCACTTGAAGAT+GGG 0.571889 8_1:-55054406 None:intergenic
TGATCTTGTGACTCTTCTTG+CGG 0.576495 8_1:-55054345 None:intergenic
AGATTTCTCTGACAAATCTG+AGG 0.585613 8_1:+55055347 Msa1201780:CDS
TGTCGAGTATTGCAAAGCAA+AGG 0.586942 8_1:+55054816 Msa1201780:CDS
GTGAACGTTGGGGATTTGAG+GGG 0.588053 8_1:-55055017 None:intergenic
CCATTCGCAAGGCCAACGAT+GGG 0.588894 8_1:-55054776 None:intergenic
TGAGATTTCTAAACTGACAA+TGG 0.589958 8_1:+55054928 Msa1201780:CDS
TCTGGTGAAGCTTTGTTGAG+GGG 0.592227 8_1:+55054866 Msa1201780:CDS
TGAATCACCATCATCTTCTG+TGG 0.596610 8_1:-55055394 None:intergenic
GTTGACGTTGGAAGCAGTCA+AGG 0.599884 8_1:-55054378 None:intergenic
AACCAGGAGTCTTCTTCACC+CGG 0.600868 8_1:-55054844 None:intergenic
ATGGGGTCCACAGAAGATGA+TGG 0.602409 8_1:+55055387 Msa1201780:CDS
TAGTGATGAAGATGAGATTG+TGG 0.608219 8_1:+55055656 Msa1201780:CDS
GGCAAGCACAACAACAGGAT+CGG 0.611365 8_1:+55054723 Msa1201780:CDS
TGTGAGGGTTTGAGCAACAT+AGG 0.619396 8_1:+55055573 Msa1201780:CDS
TCAGAGAAATCTAACAGCAG+TGG 0.624435 8_1:-55055336 None:intergenic
TGCTTTGCAATACTCGACAG+AGG 0.633641 8_1:-55054812 None:intergenic
CAAAATCAAGACAAAGAAAG+GGG 0.636675 8_1:+55054702 Msa1201780:CDS
AGATGATGAGGAAATAGCTG+AGG 0.641873 8_1:+55055461 Msa1201780:CDS
AGTGGCAATGTTGTGAACGT+TGG 0.649070 8_1:-55055029 None:intergenic
TGATGATGATGAAGATGATG+AGG 0.651668 8_1:+55055449 Msa1201780:CDS
TCGAGTATTGCAAAGCAAAG+GGG 0.695579 8_1:+55054818 Msa1201780:CDS
TTACAGAAGACTCTAAGATG+GGG 0.707522 8_1:+55055370 Msa1201780:CDS
TGGCAATGTTGTGAACGTTG+GGG 0.707529 8_1:-55055027 None:intergenic
TGAAAACTCAGTGAAACCAG+TGG 0.711880 8_1:-55055047 None:intergenic
GACGTTGGAAGCAGTCAAGG+TGG 0.736556 8_1:-55054375 None:intergenic
AGGAACATGACTCTGATGAG+TGG 0.740210 8_1:-55056081 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTCTAAAATCGATTTTTTT+TGG - chr8_1:55054434-55054453 None:intergenic 15.0%
!!! AAAAATCGATTTTAGAAAAT+AGG + chr8_1:55054436-55054455 Msa1201780:intron 15.0%
!!! TCTTTATAAAAATTCGATTT+TGG + chr8_1:55054521-55054540 Msa1201780:intron 15.0%
!!! TTTTGATCATTTTTTTTCAT+GGG + chr8_1:55054612-55054631 Msa1201780:intron 15.0%
!!! TTTCTAAAATCGATTTTTTT+TGG - chr8_1:55054434-55054453 None:intergenic 15.0%
!!! AAAAATCGATTTTAGAAAAT+AGG + chr8_1:55054436-55054455 Msa1201780:intron 15.0%
!!! TCTTTATAAAAATTCGATTT+TGG + chr8_1:55054521-55054540 Msa1201780:intron 15.0%
!!! TTTTGATCATTTTTTTTCAT+GGG + chr8_1:55054612-55054631 Msa1201780:intron 15.0%
!!! TTGATAATTTTCAAGTTTGA+TGG + chr8_1:55054461-55054480 Msa1201780:intron 20.0%
!!! AAAAATTCGATTTTGGAAAA+TGG + chr8_1:55054528-55054547 Msa1201780:intron 20.0%
!!! AAAATTCGATTTTGGAAAAT+GGG + chr8_1:55054529-55054548 Msa1201780:intron 20.0%
!!! CTTTATCAAAGATTTGATTT+TGG + chr8_1:55054582-55054601 Msa1201780:intron 20.0%
!!! AAAGATTTGATTTTGGAAAT+TGG + chr8_1:55054589-55054608 Msa1201780:intron 20.0%
!!! GTTTTGATCATTTTTTTTCA+TGG + chr8_1:55054611-55054630 Msa1201780:intron 20.0%
!! ATGTAACACATAAAATACAA+TGG - chr8_1:55055131-55055150 None:intergenic 20.0%
!! AATGAAAGAAACAATATCAT+TGG - chr8_1:55055921-55055940 None:intergenic 20.0%
!! ATGATAGCAATTCTAAATAA+TGG + chr8_1:55055996-55056015 Msa1201780:three_prime_UTR 20.0%
!! TAAATAATGGCATAATCATA+AGG + chr8_1:55056009-55056028 Msa1201780:three_prime_UTR 20.0%
!!! AATTTCTAAAATGCAACTTT+TGG + chr8_1:55056049-55056068 Msa1201780:three_prime_UTR 20.0%
!!! TTGATAATTTTCAAGTTTGA+TGG + chr8_1:55054461-55054480 Msa1201780:intron 20.0%
!!! AAAAATTCGATTTTGGAAAA+TGG + chr8_1:55054528-55054547 Msa1201780:intron 20.0%
!!! AAAATTCGATTTTGGAAAAT+GGG + chr8_1:55054529-55054548 Msa1201780:intron 20.0%
!!! CTTTATCAAAGATTTGATTT+TGG + chr8_1:55054582-55054601 Msa1201780:intron 20.0%
!!! AAAGATTTGATTTTGGAAAT+TGG + chr8_1:55054589-55054608 Msa1201780:intron 20.0%
!!! GTTTTGATCATTTTTTTTCA+TGG + chr8_1:55054611-55054630 Msa1201780:intron 20.0%
!! ATGTAACACATAAAATACAA+TGG - chr8_1:55055131-55055150 None:intergenic 20.0%
!! AATGAAAGAAACAATATCAT+TGG - chr8_1:55055921-55055940 None:intergenic 20.0%
!! ATGATAGCAATTCTAAATAA+TGG + chr8_1:55055996-55056015 Msa1201780:three_prime_UTR 20.0%
!! TAAATAATGGCATAATCATA+AGG + chr8_1:55056009-55056028 Msa1201780:three_prime_UTR 20.0%
!!! AATTTCTAAAATGCAACTTT+TGG + chr8_1:55056049-55056068 Msa1201780:three_prime_UTR 20.0%
! TTCAAAATCAAGACAAAGAA+AGG + chr8_1:55054700-55054719 Msa1201780:CDS 25.0%
! TCAAAATCAAGACAAAGAAA+GGG + chr8_1:55054701-55054720 Msa1201780:CDS 25.0%
! GAGTTAACAAATTGAAGAAA+AGG - chr8_1:55054962-55054981 None:intergenic 25.0%
!!! TTGTTTTTGCTTAGTTTTGT+TGG + chr8_1:55055806-55055825 Msa1201780:three_prime_UTR 25.0%
!!! TTTGTTTCTTTTTACCTGAA+TGG + chr8_1:55055859-55055878 Msa1201780:three_prime_UTR 25.0%
! AGATATAATCATAAACTTGC+TGG - chr8_1:55055976-55055995 None:intergenic 25.0%
! TTCAAAATCAAGACAAAGAA+AGG + chr8_1:55054700-55054719 Msa1201780:CDS 25.0%
! TCAAAATCAAGACAAAGAAA+GGG + chr8_1:55054701-55054720 Msa1201780:CDS 25.0%
! GAGTTAACAAATTGAAGAAA+AGG - chr8_1:55054962-55054981 None:intergenic 25.0%
!!! TTGTTTTTGCTTAGTTTTGT+TGG + chr8_1:55055806-55055825 Msa1201780:three_prime_UTR 25.0%
!!! TTTGTTTCTTTTTACCTGAA+TGG + chr8_1:55055859-55055878 Msa1201780:three_prime_UTR 25.0%
! AGATATAATCATAAACTTGC+TGG - chr8_1:55055976-55055995 None:intergenic 25.0%
CTTTCAATCACTTTCAACAA+TGG + chr8_1:55054307-55054326 Msa1201780:exon 30.0%
AGAATTACTCACTTGAAGAT+GGG - chr8_1:55054409-55054428 None:intergenic 30.0%
AAGAATTACTCACTTGAAGA+TGG - chr8_1:55054410-55054429 None:intergenic 30.0%
! TCTCATGATTTTCTTGATTC+AGG + chr8_1:55054650-55054669 Msa1201780:intron 30.0%
! CTCATGATTTTCTTGATTCA+GGG + chr8_1:55054651-55054670 Msa1201780:intron 30.0%
CAAAATCAAGACAAAGAAAG+GGG + chr8_1:55054702-55054721 Msa1201780:CDS 30.0%
TGAGATTTCTAAACTGACAA+TGG + chr8_1:55054928-55054947 Msa1201780:CDS 30.0%
!! TTGATTTGATTTTTGCTGTC+AGG + chr8_1:55055269-55055288 Msa1201780:intron 30.0%
! AAGATGATGGTGATTCAATT+TGG + chr8_1:55055400-55055419 Msa1201780:CDS 30.0%
!! TCTGAGATTTTGCATTTGAA+GGG + chr8_1:55055711-55055730 Msa1201780:CDS 30.0%
! AAACGAATATGCTTTCCTTT+TGG - chr8_1:55055747-55055766 None:intergenic 30.0%
!! AAAGCATATTCGTTTTTCTG+AGG + chr8_1:55055752-55055771 Msa1201780:CDS 30.0%
AAGAAACAAAAGCCAAAAAG+TGG - chr8_1:55055849-55055868 None:intergenic 30.0%
TGCTTAATTGACAAGATTCT+TGG + chr8_1:55055943-55055962 Msa1201780:three_prime_UTR 30.0%
CTTTCAATCACTTTCAACAA+TGG + chr8_1:55054307-55054326 Msa1201780:exon 30.0%
AGAATTACTCACTTGAAGAT+GGG - chr8_1:55054409-55054428 None:intergenic 30.0%
AAGAATTACTCACTTGAAGA+TGG - chr8_1:55054410-55054429 None:intergenic 30.0%
! TCTCATGATTTTCTTGATTC+AGG + chr8_1:55054650-55054669 Msa1201780:intron 30.0%
! CTCATGATTTTCTTGATTCA+GGG + chr8_1:55054651-55054670 Msa1201780:intron 30.0%
CAAAATCAAGACAAAGAAAG+GGG + chr8_1:55054702-55054721 Msa1201780:CDS 30.0%
TGAGATTTCTAAACTGACAA+TGG + chr8_1:55054928-55054947 Msa1201780:CDS 30.0%
!! TTGATTTGATTTTTGCTGTC+AGG + chr8_1:55055269-55055288 Msa1201780:intron 30.0%
! AAGATGATGGTGATTCAATT+TGG + chr8_1:55055400-55055419 Msa1201780:CDS 30.0%
!! TCTGAGATTTTGCATTTGAA+GGG + chr8_1:55055711-55055730 Msa1201780:CDS 30.0%
! AAACGAATATGCTTTCCTTT+TGG - chr8_1:55055747-55055766 None:intergenic 30.0%
!! AAAGCATATTCGTTTTTCTG+AGG + chr8_1:55055752-55055771 Msa1201780:CDS 30.0%
AAGAAACAAAAGCCAAAAAG+TGG - chr8_1:55055849-55055868 None:intergenic 30.0%
TGCTTAATTGACAAGATTCT+TGG + chr8_1:55055943-55055962 Msa1201780:three_prime_UTR 30.0%
TTCTTCAACCTTCTGCAAAA+GGG - chr8_1:55054903-55054922 None:intergenic 35.0%
TGTTCTTGAACAACAGAAGA+AGG - chr8_1:55055073-55055092 None:intergenic 35.0%
AGATTTCTCTGACAAATCTG+AGG + chr8_1:55055347-55055366 Msa1201780:CDS 35.0%
!! GTTACAGAAGACTCTAAGAT+GGG + chr8_1:55055369-55055388 Msa1201780:CDS 35.0%
!! TTACAGAAGACTCTAAGATG+GGG + chr8_1:55055370-55055389 Msa1201780:CDS 35.0%
! TGATGATGATGAAGATGATG+AGG + chr8_1:55055449-55055468 Msa1201780:CDS 35.0%
AGGTGTGAATGAAGGAAATA+TGG + chr8_1:55055593-55055612 Msa1201780:CDS 35.0%
AATATGGTTCCAAAGTTTGC+TGG + chr8_1:55055609-55055628 Msa1201780:CDS 35.0%
! ATATGGTTCCAAAGTTTGCT+GGG + chr8_1:55055610-55055629 Msa1201780:CDS 35.0%
TAGTGATGAAGATGAGATTG+TGG + chr8_1:55055656-55055675 Msa1201780:CDS 35.0%
!!! CTCTGAGATTTTGCATTTGA+AGG + chr8_1:55055710-55055729 Msa1201780:CDS 35.0%
! CTGAGATTTTGCATTTGAAG+GGG + chr8_1:55055712-55055731 Msa1201780:CDS 35.0%
!!! ATATGCTTTCCTTTTGGAGT+TGG - chr8_1:55055741-55055760 None:intergenic 35.0%
!! TCTCTTTTGACACCACTTTT+TGG + chr8_1:55055834-55055853 Msa1201780:three_prime_UTR 35.0%
GGCATAATCATAAGGTAGAT+TGG + chr8_1:55056017-55056036 Msa1201780:three_prime_UTR 35.0%
TTCTTCAACCTTCTGCAAAA+GGG - chr8_1:55054903-55054922 None:intergenic 35.0%
TGTTCTTGAACAACAGAAGA+AGG - chr8_1:55055073-55055092 None:intergenic 35.0%
AGATTTCTCTGACAAATCTG+AGG + chr8_1:55055347-55055366 Msa1201780:CDS 35.0%
!! GTTACAGAAGACTCTAAGAT+GGG + chr8_1:55055369-55055388 Msa1201780:CDS 35.0%
!! TTACAGAAGACTCTAAGATG+GGG + chr8_1:55055370-55055389 Msa1201780:CDS 35.0%
! TGATGATGATGAAGATGATG+AGG + chr8_1:55055449-55055468 Msa1201780:CDS 35.0%
AGGTGTGAATGAAGGAAATA+TGG + chr8_1:55055593-55055612 Msa1201780:CDS 35.0%
AATATGGTTCCAAAGTTTGC+TGG + chr8_1:55055609-55055628 Msa1201780:CDS 35.0%
! ATATGGTTCCAAAGTTTGCT+GGG + chr8_1:55055610-55055629 Msa1201780:CDS 35.0%
TAGTGATGAAGATGAGATTG+TGG + chr8_1:55055656-55055675 Msa1201780:CDS 35.0%
!!! CTCTGAGATTTTGCATTTGA+AGG + chr8_1:55055710-55055729 Msa1201780:CDS 35.0%
! CTGAGATTTTGCATTTGAAG+GGG + chr8_1:55055712-55055731 Msa1201780:CDS 35.0%
!!! ATATGCTTTCCTTTTGGAGT+TGG - chr8_1:55055741-55055760 None:intergenic 35.0%
!! TCTCTTTTGACACCACTTTT+TGG + chr8_1:55055834-55055853 Msa1201780:three_prime_UTR 35.0%
GGCATAATCATAAGGTAGAT+TGG + chr8_1:55056017-55056036 Msa1201780:three_prime_UTR 35.0%
TGATCTTGTGACTCTTCTTG+CGG - chr8_1:55054348-55054367 None:intergenic 40.0%
TTCAGGGAAGATCGAAGATT+CGG + chr8_1:55054667-55054686 Msa1201780:intron 40.0%
! TGTCGAGTATTGCAAAGCAA+AGG + chr8_1:55054816-55054835 Msa1201780:CDS 40.0%
! GTCGAGTATTGCAAAGCAAA+GGG + chr8_1:55054817-55054836 Msa1201780:CDS 40.0%
! TCGAGTATTGCAAAGCAAAG+GGG + chr8_1:55054818-55054837 Msa1201780:CDS 40.0%
!! TTCTGGTGAAGCTTTGTTGA+GGG + chr8_1:55054865-55054884 Msa1201780:CDS 40.0%
CTTCTTCAACCTTCTGCAAA+AGG - chr8_1:55054904-55054923 None:intergenic 40.0%
TGAAAACTCAGTGAAACCAG+TGG - chr8_1:55055050-55055069 None:intergenic 40.0%
TCAAGAACAACTCATTCCTC+AGG + chr8_1:55055084-55055103 Msa1201780:CDS 40.0%
TCAGAGAAATCTAACAGCAG+TGG - chr8_1:55055339-55055358 None:intergenic 40.0%
! GGTTACAGAAGACTCTAAGA+TGG + chr8_1:55055368-55055387 Msa1201780:CDS 40.0%
TGAATCACCATCATCTTCTG+TGG - chr8_1:55055397-55055416 None:intergenic 40.0%
AGATGATGAGGAAATAGCTG+AGG + chr8_1:55055461-55055480 Msa1201780:CDS 40.0%
TGAGGAGGATGATTACTATG+AGG + chr8_1:55055494-55055513 Msa1201780:CDS 40.0%
GAGGAGGATGATTACTATGA+GGG + chr8_1:55055495-55055514 Msa1201780:CDS 40.0%
! GAAGAAGAAGAGTATGCTGA+TGG + chr8_1:55055528-55055547 Msa1201780:CDS 40.0%
! AAGAAGAGTATGCTGATGGA+GGG + chr8_1:55055532-55055551 Msa1201780:CDS 40.0%
CTACTTGATGAACTGTGTGA+GGG + chr8_1:55055558-55055577 Msa1201780:CDS 40.0%
AGCAACATAGGTGTGAATGA+AGG + chr8_1:55055585-55055604 Msa1201780:CDS 40.0%
GTATGTTTCCCAGCAAACTT+TGG - chr8_1:55055621-55055640 None:intergenic 40.0%
TGAAGATGAGATTGTGGAAG+AGG + chr8_1:55055662-55055681 Msa1201780:CDS 40.0%
!! GCATATTCGTTTTTCTGAGG+AGG + chr8_1:55055755-55055774 Msa1201780:CDS 40.0%
GAGCATTCAACGACATGTTA+TGG - chr8_1:55055899-55055918 None:intergenic 40.0%
TGATCTTGTGACTCTTCTTG+CGG - chr8_1:55054348-55054367 None:intergenic 40.0%
TTCAGGGAAGATCGAAGATT+CGG + chr8_1:55054667-55054686 Msa1201780:intron 40.0%
! TGTCGAGTATTGCAAAGCAA+AGG + chr8_1:55054816-55054835 Msa1201780:CDS 40.0%
! GTCGAGTATTGCAAAGCAAA+GGG + chr8_1:55054817-55054836 Msa1201780:CDS 40.0%
! TCGAGTATTGCAAAGCAAAG+GGG + chr8_1:55054818-55054837 Msa1201780:CDS 40.0%
!! TTCTGGTGAAGCTTTGTTGA+GGG + chr8_1:55054865-55054884 Msa1201780:CDS 40.0%
CTTCTTCAACCTTCTGCAAA+AGG - chr8_1:55054904-55054923 None:intergenic 40.0%
TGAAAACTCAGTGAAACCAG+TGG - chr8_1:55055050-55055069 None:intergenic 40.0%
TCAAGAACAACTCATTCCTC+AGG + chr8_1:55055084-55055103 Msa1201780:CDS 40.0%
TCAGAGAAATCTAACAGCAG+TGG - chr8_1:55055339-55055358 None:intergenic 40.0%
! GGTTACAGAAGACTCTAAGA+TGG + chr8_1:55055368-55055387 Msa1201780:CDS 40.0%
TGAATCACCATCATCTTCTG+TGG - chr8_1:55055397-55055416 None:intergenic 40.0%
AGATGATGAGGAAATAGCTG+AGG + chr8_1:55055461-55055480 Msa1201780:CDS 40.0%
TGAGGAGGATGATTACTATG+AGG + chr8_1:55055494-55055513 Msa1201780:CDS 40.0%
GAGGAGGATGATTACTATGA+GGG + chr8_1:55055495-55055514 Msa1201780:CDS 40.0%
! GAAGAAGAAGAGTATGCTGA+TGG + chr8_1:55055528-55055547 Msa1201780:CDS 40.0%
! AAGAAGAGTATGCTGATGGA+GGG + chr8_1:55055532-55055551 Msa1201780:CDS 40.0%
CTACTTGATGAACTGTGTGA+GGG + chr8_1:55055558-55055577 Msa1201780:CDS 40.0%
AGCAACATAGGTGTGAATGA+AGG + chr8_1:55055585-55055604 Msa1201780:CDS 40.0%
GTATGTTTCCCAGCAAACTT+TGG - chr8_1:55055621-55055640 None:intergenic 40.0%
TGAAGATGAGATTGTGGAAG+AGG + chr8_1:55055662-55055681 Msa1201780:CDS 40.0%
!! GCATATTCGTTTTTCTGAGG+AGG + chr8_1:55055755-55055774 Msa1201780:CDS 40.0%
GAGCATTCAACGACATGTTA+TGG - chr8_1:55055899-55055918 None:intergenic 40.0%
AGATGGGATGTTGTTGACGT+TGG - chr8_1:55054393-55054412 None:intergenic 45.0%
TCCAATGATTCTCCCATCGT+TGG + chr8_1:55054764-55054783 Msa1201780:CDS 45.0%
TGCTTTGCAATACTCGACAG+AGG - chr8_1:55054815-55054834 None:intergenic 45.0%
AACAAAGCTTCACCAGAACC+AGG - chr8_1:55054863-55054882 None:intergenic 45.0%
!! GTTCTGGTGAAGCTTTGTTG+AGG + chr8_1:55054864-55054883 Msa1201780:CDS 45.0%
!! TCTGGTGAAGCTTTGTTGAG+GGG + chr8_1:55054866-55054885 Msa1201780:CDS 45.0%
! AGTGAAGACCCTTTTGCAGA+AGG + chr8_1:55054892-55054911 Msa1201780:CDS 45.0%
TGTGAACGTTGGGGATTTGA+GGG - chr8_1:55055021-55055040 None:intergenic 45.0%
TTGTGAACGTTGGGGATTTG+AGG - chr8_1:55055022-55055041 None:intergenic 45.0%
TGGCAATGTTGTGAACGTTG+GGG - chr8_1:55055030-55055049 None:intergenic 45.0%
GTGGCAATGTTGTGAACGTT+GGG - chr8_1:55055031-55055050 None:intergenic 45.0%
AGTGGCAATGTTGTGAACGT+TGG - chr8_1:55055032-55055051 None:intergenic 45.0%
AACGTTCACAACATTGCCAC+TGG + chr8_1:55055031-55055050 Msa1201780:CDS 45.0%
AGAAGACTGTGACAAACCTG+AGG - chr8_1:55055103-55055122 None:intergenic 45.0%
AGCTGAGGTAGAAGAAGATG+AGG + chr8_1:55055476-55055495 Msa1201780:CDS 45.0%
TGAGGTAGAAGAAGATGAGG+AGG + chr8_1:55055479-55055498 Msa1201780:CDS 45.0%
! GAAGAAGAGTATGCTGATGG+AGG + chr8_1:55055531-55055550 Msa1201780:CDS 45.0%
GCTACTTGATGAACTGTGTG+AGG + chr8_1:55055557-55055576 Msa1201780:CDS 45.0%
TGTGAGGGTTTGAGCAACAT+AGG + chr8_1:55055573-55055592 Msa1201780:CDS 45.0%
AGATGGGATGTTGTTGACGT+TGG - chr8_1:55054393-55054412 None:intergenic 45.0%
TCCAATGATTCTCCCATCGT+TGG + chr8_1:55054764-55054783 Msa1201780:CDS 45.0%
TGCTTTGCAATACTCGACAG+AGG - chr8_1:55054815-55054834 None:intergenic 45.0%
AACAAAGCTTCACCAGAACC+AGG - chr8_1:55054863-55054882 None:intergenic 45.0%
!! GTTCTGGTGAAGCTTTGTTG+AGG + chr8_1:55054864-55054883 Msa1201780:CDS 45.0%
!! TCTGGTGAAGCTTTGTTGAG+GGG + chr8_1:55054866-55054885 Msa1201780:CDS 45.0%
! AGTGAAGACCCTTTTGCAGA+AGG + chr8_1:55054892-55054911 Msa1201780:CDS 45.0%
TGTGAACGTTGGGGATTTGA+GGG - chr8_1:55055021-55055040 None:intergenic 45.0%
TTGTGAACGTTGGGGATTTG+AGG - chr8_1:55055022-55055041 None:intergenic 45.0%
TGGCAATGTTGTGAACGTTG+GGG - chr8_1:55055030-55055049 None:intergenic 45.0%
GTGGCAATGTTGTGAACGTT+GGG - chr8_1:55055031-55055050 None:intergenic 45.0%
AGTGGCAATGTTGTGAACGT+TGG - chr8_1:55055032-55055051 None:intergenic 45.0%
AACGTTCACAACATTGCCAC+TGG + chr8_1:55055031-55055050 Msa1201780:CDS 45.0%
AGAAGACTGTGACAAACCTG+AGG - chr8_1:55055103-55055122 None:intergenic 45.0%
AGCTGAGGTAGAAGAAGATG+AGG + chr8_1:55055476-55055495 Msa1201780:CDS 45.0%
TGAGGTAGAAGAAGATGAGG+AGG + chr8_1:55055479-55055498 Msa1201780:CDS 45.0%
! GAAGAAGAGTATGCTGATGG+AGG + chr8_1:55055531-55055550 Msa1201780:CDS 45.0%
GCTACTTGATGAACTGTGTG+AGG + chr8_1:55055557-55055576 Msa1201780:CDS 45.0%
TGTGAGGGTTTGAGCAACAT+AGG + chr8_1:55055573-55055592 Msa1201780:CDS 45.0%
ACTCTTCTTGCGGTGGATGA+AGG - chr8_1:55054338-55054357 None:intergenic 50.0%
TCTTGTGACTCTTCTTGCGG+TGG - chr8_1:55054345-55054364 None:intergenic 50.0%
GTTGACGTTGGAAGCAGTCA+AGG - chr8_1:55054381-55054400 None:intergenic 50.0%
AAAGGGGCAAGCACAACAAC+AGG + chr8_1:55054718-55054737 Msa1201780:CDS 50.0%
GGCAAGCACAACAACAGGAT+CGG + chr8_1:55054723-55054742 Msa1201780:CDS 50.0%
GCCAACGATGGGAGAATCAT+TGG - chr8_1:55054768-55054787 None:intergenic 50.0%
TTTCGATCTCGCCATTCGCA+AGG - chr8_1:55054790-55054809 None:intergenic 50.0%
TTGCAAAGCAAAGGGGAAGC+CGG + chr8_1:55054825-55054844 Msa1201780:CDS 50.0%
AACCAGGAGTCTTCTTCACC+CGG - chr8_1:55054847-55054866 None:intergenic 50.0%
GTGAAGAAGACTCCTGGTTC+TGG + chr8_1:55054848-55054867 Msa1201780:CDS 50.0%
GTTGGGGCAAGAAGTTGCAT+TGG - chr8_1:55054986-55055005 None:intergenic 50.0%
GTGAACGTTGGGGATTTGAG+GGG - chr8_1:55055020-55055039 None:intergenic 50.0%
ATGGGGTCCACAGAAGATGA+TGG + chr8_1:55055387-55055406 Msa1201780:CDS 50.0%
AAGGGGTTGCCAACTCCAAA+AGG + chr8_1:55055729-55055748 Msa1201780:CDS 50.0%
ACCTGAATGGAGCTAGTGCT+AGG + chr8_1:55055872-55055891 Msa1201780:three_prime_UTR 50.0%
TCCTAGCACTAGCTCCATTC+AGG - chr8_1:55055876-55055895 None:intergenic 50.0%
ACTCTTCTTGCGGTGGATGA+AGG - chr8_1:55054338-55054357 None:intergenic 50.0%
TCTTGTGACTCTTCTTGCGG+TGG - chr8_1:55054345-55054364 None:intergenic 50.0%
GTTGACGTTGGAAGCAGTCA+AGG - chr8_1:55054381-55054400 None:intergenic 50.0%
AAAGGGGCAAGCACAACAAC+AGG + chr8_1:55054718-55054737 Msa1201780:CDS 50.0%
GGCAAGCACAACAACAGGAT+CGG + chr8_1:55054723-55054742 Msa1201780:CDS 50.0%
GCCAACGATGGGAGAATCAT+TGG - chr8_1:55054768-55054787 None:intergenic 50.0%
TTTCGATCTCGCCATTCGCA+AGG - chr8_1:55054790-55054809 None:intergenic 50.0%
TTGCAAAGCAAAGGGGAAGC+CGG + chr8_1:55054825-55054844 Msa1201780:CDS 50.0%
AACCAGGAGTCTTCTTCACC+CGG - chr8_1:55054847-55054866 None:intergenic 50.0%
GTGAAGAAGACTCCTGGTTC+TGG + chr8_1:55054848-55054867 Msa1201780:CDS 50.0%
GTTGGGGCAAGAAGTTGCAT+TGG - chr8_1:55054986-55055005 None:intergenic 50.0%
GTGAACGTTGGGGATTTGAG+GGG - chr8_1:55055020-55055039 None:intergenic 50.0%
ATGGGGTCCACAGAAGATGA+TGG + chr8_1:55055387-55055406 Msa1201780:CDS 50.0%
AAGGGGTTGCCAACTCCAAA+AGG + chr8_1:55055729-55055748 Msa1201780:CDS 50.0%
ACCTGAATGGAGCTAGTGCT+AGG + chr8_1:55055872-55055891 Msa1201780:three_prime_UTR 50.0%
TCCTAGCACTAGCTCCATTC+AGG - chr8_1:55055876-55055895 None:intergenic 50.0%
GACGTTGGAAGCAGTCAAGG+TGG - chr8_1:55054378-55054397 None:intergenic 55.0%
CCATTCGCAAGGCCAACGAT+GGG - chr8_1:55054779-55054798 None:intergenic 55.0%
TGCAAAGCAAAGGGGAAGCC+GGG + chr8_1:55054826-55054845 Msa1201780:CDS 55.0%
!! AGGGGTGTTTGCAGGAGTTG+GGG - chr8_1:55055002-55055021 None:intergenic 55.0%
!! GAGGGGTGTTTGCAGGAGTT+GGG - chr8_1:55055003-55055022 None:intergenic 55.0%
!! TGAGGGGTGTTTGCAGGAGT+TGG - chr8_1:55055004-55055023 None:intergenic 55.0%
!! GGGATTTGAGGGGTGTTTGC+AGG - chr8_1:55055010-55055029 None:intergenic 55.0%
GACGTTGGAAGCAGTCAAGG+TGG - chr8_1:55054378-55054397 None:intergenic 55.0%
CCATTCGCAAGGCCAACGAT+GGG - chr8_1:55054779-55054798 None:intergenic 55.0%
TGCAAAGCAAAGGGGAAGCC+GGG + chr8_1:55054826-55054845 Msa1201780:CDS 55.0%
!! AGGGGTGTTTGCAGGAGTTG+GGG - chr8_1:55055002-55055021 None:intergenic 55.0%
!! GAGGGGTGTTTGCAGGAGTT+GGG - chr8_1:55055003-55055022 None:intergenic 55.0%
!! TGAGGGGTGTTTGCAGGAGT+TGG - chr8_1:55055004-55055023 None:intergenic 55.0%
!! GGGATTTGAGGGGTGTTTGC+AGG - chr8_1:55055010-55055029 None:intergenic 55.0%
!! CCCATCGTTGGCCTTGCGAA+TGG + chr8_1:55054776-55054795 Msa1201780:CDS 60.0%
GCCATTCGCAAGGCCAACGA+TGG - chr8_1:55054780-55054799 None:intergenic 60.0%
AGCCGGGTGAAGAAGACTCC+TGG + chr8_1:55054842-55054861 Msa1201780:CDS 60.0%
!! CCCATCGTTGGCCTTGCGAA+TGG + chr8_1:55054776-55054795 Msa1201780:CDS 60.0%
GCCATTCGCAAGGCCAACGA+TGG - chr8_1:55054780-55054799 None:intergenic 60.0%
AGCCGGGTGAAGAAGACTCC+TGG + chr8_1:55054842-55054861 Msa1201780:CDS 60.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 55054230 55056091 55054230 ID=Msa1201780;Name=Msa1201780
chr8_1 mRNA 55054230 55056091 55054230 ID=Msa1201780-mRNA-1;Parent=Msa1201780;Name=Msa1201780-mRNA-1;_AED=0.01;_eAED=0.01;_QI=96|1|1|1|1|1|3|294|343
chr8_1 exon 55054230 55054416 55054230 ID=Msa1201780-mRNA-1:exon:17776;Parent=Msa1201780-mRNA-1
chr8_1 exon 55054672 55055105 55054672 ID=Msa1201780-mRNA-1:exon:17777;Parent=Msa1201780-mRNA-1
chr8_1 exon 55055291 55056091 55055291 ID=Msa1201780-mRNA-1:exon:17778;Parent=Msa1201780-mRNA-1
chr8_1 five_prime_UTR 55054230 55054325 55054230 ID=Msa1201780-mRNA-1:five_prime_utr;Parent=Msa1201780-mRNA-1
chr8_1 CDS 55054326 55054416 55054326 ID=Msa1201780-mRNA-1:cds;Parent=Msa1201780-mRNA-1
chr8_1 CDS 55054672 55055105 55054672 ID=Msa1201780-mRNA-1:cds;Parent=Msa1201780-mRNA-1
chr8_1 CDS 55055291 55055797 55055291 ID=Msa1201780-mRNA-1:cds;Parent=Msa1201780-mRNA-1
chr8_1 three_prime_UTR 55055798 55056091 55055798 ID=Msa1201780-mRNA-1:three_prime_utr;Parent=Msa1201780-mRNA-1
Gene Sequence

>Msa1201780

ATGGAGACTCCTTCATCCACCGCAAGAAGAGTCACAAGATCACAAACAACCACCTTGACTGCTTCCAACGTCAACAACATCCCATCTTCAAGGAAGATCGAAGATTCGGAAAAGAATGCTTCAAAATCAAGACAAAGAAAGGGGCAAGCACAACAACAGGATCGGTGTGCACTGATCGACATATCCAATGATTCTCCCATCGTTGGCCTTGCGAATGGCGAGATCGAAACACCTCTGTCGAGTATTGCAAAGCAAAGGGGAAGCCGGGTGAAGAAGACTCCTGGTTCTGGTGAAGCTTTGTTGAGGGGTCAAGTGAAGACCCTTTTGCAGAAGGTTGAAGAAGAAGCTGAGATTTCTAAACTGACAATGGATGTTCGTCCTTTTCTTCAATTTGTTAACTCTCCAATGCAACTTCTTGCCCCAACTCCTGCAAACACCCCTCAAATCCCCAACGTTCACAACATTGCCACTGGTTTCACTGAGTTTTCACCTTCTTCTGTTGTTCAAGAACAACTCATTCCTCAGGTGCTGATTCAAGAGAATGTTGAATCTGAAAAGAATGTGCTAAGTCCACTGCTGTTAGATTTCTCTGACAAATCTGAGGTTACAGAAGACTCTAAGATGGGGTCCACAGAAGATGATGGTGATTCAATTTGGTCAATTCAAGTCAATGCAAGCACACATGATGATGATGAAGATGATGAGGAAATAGCTGAGGTAGAAGAAGATGAGGAGGATGATTACTATGAGGGTGTTGAAGAAGAAGAAGAAGAGTATGCTGATGGAGGGTTGCTACTTGATGAACTGTGTGAGGGTTTGAGCAACATAGGTGTGAATGAAGGAAATATGGTTCCAAAGTTTGCTGGGAAACATACAAGATTTTTGTATGATAGTGATGAAGATGAGATTGTGGAAGAGGTTGTTGAAGAATCTGCTGATTCTAACTCTGAGATTTTGCATTTGAAGGGGTTGCCAACTCCAAAAGGAAAGCATATTCGTTTTTCTGAGGAGGAAGAAAAATCTGATCTGTGA

Protein sequence

>Msa1201780

METPSSTARRVTRSQTTTLTASNVNNIPSSRKIEDSEKNASKSRQRKGQAQQQDRCALIDISNDSPIVGLANGEIETPLSSIAKQRGSRVKKTPGSGEALLRGQVKTLLQKVEEEAEISKLTMDVRPFLQFVNSPMQLLAPTPANTPQIPNVHNIATGFTEFSPSSVVQEQLIPQVLIQENVESEKNVLSPLLLDFSDKSEVTEDSKMGSTEDDGDSIWSIQVNASTHDDDEDDEEIAEVEEDEEDDYYEGVEEEEEEYADGGLLLDELCEGLSNIGVNEGNMVPKFAGKHTRFLYDSDEDEIVEEVVEESADSNSEILHLKGLPTPKGKHIRFSEEEEKSDL*