AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0840520


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0840520 MtrunA17_Chr5g0409741 98.540 548 6 1 1 548 1 546 0.0 1090
Msa0840520 MtrunA17_Chr8g0369321 59.506 405 141 6 147 548 1 385 1.87e-158 457
Msa0840520 MtrunA17_Chr8g0369331 56.322 87 37 1 46 131 15 101 5.30e-31 116
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 141 sgRNAs with CRISPR-Local

Find 338 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGAAGCTCTCCGGTGGTTTC+TGG 0.133359 5_4:-16257839 Msa0840520:CDS
AGAGAAAATAAGAAAGAAAA+AGG 0.179522 5_4:+16262095 None:intergenic
TGCTGAAAACTTTGAAATTA+TGG 0.208999 5_4:+16259017 None:intergenic
GGAATTGTTGTGTTGCTATT+TGG 0.217379 5_4:-16257920 Msa0840520:CDS
CCTTCTAGATTTGAAACTTT+TGG 0.246591 5_4:-16261853 Msa0840520:CDS
GCTACTGCTGCTGGTTGTTT+TGG 0.254307 5_4:-16258664 Msa0840520:CDS
GCCATAGCTGCACCAATTCT+TGG 0.258567 5_4:-16258958 Msa0840520:CDS
AGAGCGATATTATGAGTCTT+TGG 0.272001 5_4:-16258585 Msa0840520:CDS
TCGCTTCTGTCTTCAGGGTT+TGG 0.279277 5_4:-16258202 Msa0840520:CDS
TTTAATTTAAGTTGAGGATT+TGG 0.281047 5_4:-16257545 Msa0840520:three_prime_UTR
TTCAAATATCCTCATGCTAT+TGG 0.284045 5_4:-16258445 Msa0840520:CDS
GGATATTTGAAGATGGAAAA+AGG 0.290219 5_4:+16258457 None:intergenic
GCTGCAACTGTGATGAGTTT+TGG 0.299283 5_4:+16258904 None:intergenic
GTGGTTTAATTTGGCTTGTT+GGG 0.311746 5_4:-16258546 Msa0840520:CDS
AAGAAGGTGCTTTCTCTATA+TGG 0.325715 5_4:-16258051 Msa0840520:CDS
CCAAAAGTTTCAAATCTAGA+AGG 0.341466 5_4:+16261853 None:intergenic
TGCTTTCTTGAGAGTTGTTC+CGG 0.346386 5_4:+16258732 None:intergenic
ACGGACACAGTCACTGGAAA+TGG 0.347797 5_4:-16258171 Msa0840520:CDS
GCTGGTGGTGCTGTTGCTGC+AGG 0.363219 5_4:-16257884 Msa0840520:CDS
CATCGAGTTCGTGTATCATA+TGG 0.363899 5_4:+16258614 None:intergenic
GCCATTCAGAGCACATCAAC+AGG 0.364880 5_4:-16258127 Msa0840520:CDS
AGTGGTTTAATTTGGCTTGT+TGG 0.375868 5_4:-16258547 Msa0840520:CDS
AGCTGCATTGGCGACTGTGC+TGG 0.377357 5_4:+16258792 None:intergenic
CAGTTGGGCCAGGACGGATT+AGG 0.378121 5_4:-16257979 Msa0840520:CDS
TCAGGGTTTGGATTCTATTA+CGG 0.378827 5_4:-16258190 Msa0840520:CDS
TCAACGGTTACCTCTTTCAT+TGG 0.381125 5_4:+16262063 None:intergenic
GAGCGATATTATGAGTCTTT+GGG 0.383579 5_4:-16258584 Msa0840520:CDS
ACATCAATTGCTTGGGCTAC+AGG 0.393116 5_4:-16258985 Msa0840520:CDS
TTGTTGGACAGCTTTGCATT+AGG 0.398635 5_4:-16258354 Msa0840520:CDS
GAGCTGCAGGTTTGTGTGTC+GGG 0.405501 5_4:-16258015 Msa0840520:CDS
AACGAGTGGGAAAAGGAAAT+AGG 0.408665 5_4:+16258303 None:intergenic
AGAGCTAGAGAAGCTTATAA+TGG 0.410545 5_4:-16261898 Msa0840520:CDS
CGGACACAGTCACTGGAAAT+GGG 0.411485 5_4:-16258170 Msa0840520:CDS
TCACTTCATGCTACTGCTGC+TGG 0.412960 5_4:-16258673 Msa0840520:CDS
AGGACAGTGGTAAGAGAAGA+AGG 0.414441 5_4:+16262144 None:intergenic
CTTTCTCTATATGGTATGCT+TGG 0.415039 5_4:-16258042 Msa0840520:CDS
GGGTTCACAGTTGGTTCAGT+TGG 0.419215 5_4:-16257995 Msa0840520:CDS
CTCATCACAGTTGCAGCAAC+AGG 0.423526 5_4:-16258898 Msa0840520:CDS
CAACGGTTACCTCTTTCATT+GGG 0.429318 5_4:+16262064 None:intergenic
CTTGAGAGTTGTTCCGGTGA+AGG 0.430405 5_4:+16258738 None:intergenic
ACAGCTCTGTTGTGTAAGTC+AGG 0.431402 5_4:+16261931 None:intergenic
CTACTGTTTCACTTCAAGAA+TGG 0.440649 5_4:-16261738 Msa0840520:CDS
TGGAATGGACATCAATTGCT+TGG 0.448789 5_4:-16258993 Msa0840520:CDS
CTCATGATCCGCGCCTTCAC+CGG 0.455419 5_4:-16258751 Msa0840520:CDS
GGTGTTAGATTGTGCTCCAT+CGG 0.459276 5_4:-16258077 Msa0840520:CDS
CGGTGAAGATGCAGATCGTT+GGG 0.462336 5_4:-16258234 Msa0840520:CDS
GGTTCACAGTTGGTTCAGTT+GGG 0.464283 5_4:-16257994 Msa0840520:CDS
GTGTTAGATTGTGCTCCATC+GGG 0.470775 5_4:-16258076 Msa0840520:CDS
TTTCTTCATCCCAATGAAAG+AGG 0.476943 5_4:-16262073 Msa0840520:exon
AAGGAAAGGAAGCCAAGAAT+TGG 0.479551 5_4:+16258946 None:intergenic
TATAATGGTTATGAAGAAGT+TGG 0.482116 5_4:-16261883 Msa0840520:CDS
TGGCACTCACTGCTCTCAAA+AGG 0.482913 5_4:-16261701 Msa0840520:CDS
GGAATGGACATCAATTGCTT+GGG 0.484450 5_4:-16258992 Msa0840520:CDS
AAAACTAATGAATGGATTGA+GGG 0.487114 5_4:-16257751 Msa0840520:three_prime_UTR
ATCTTAACCACGCGCAGTAA+AGG 0.487567 5_4:+16258262 None:intergenic
ATAATGAGAGGAAAGACAAC+AGG 0.494062 5_4:+16261781 None:intergenic
TCTATTACGGACACAGTCAC+TGG 0.495368 5_4:-16258177 Msa0840520:CDS
GCCAAGAATTGGTGCAGCTA+TGG 0.496623 5_4:+16258957 None:intergenic
GCTATGATGCCAGCGATGTA+GGG 0.504428 5_4:+16258817 None:intergenic
ACAATGAAACGAGTGGGAAA+AGG 0.511644 5_4:+16258296 None:intergenic
TGCTATGATGCCAGCGATGT+AGG 0.512118 5_4:+16258816 None:intergenic
TGAATGGATTGAGGGATGAA+TGG 0.513135 5_4:-16257743 Msa0840520:three_prime_UTR
ACAGTTGGTTCAGTTGGGCC+AGG 0.514316 5_4:-16257989 Msa0840520:CDS
GACACCACCTTCAGCTTCAA+CGG 0.516913 5_4:+16262047 None:intergenic
AGTAGCATGAAGTGAGAGGC+GGG 0.517268 5_4:+16258681 None:intergenic
CCCTGTTGATGTGCTCTGAA+TGG 0.519342 5_4:+16258126 None:intergenic
ATGCTGCGTGTGAGCTGCAT+TGG 0.519683 5_4:+16258780 None:intergenic
TGTGCTCCATCGGGAAAAGA+AGG 0.520552 5_4:-16258067 Msa0840520:CDS
GAGGAAAGAAAATAAAAGAG+AGG 0.520821 5_4:+16262166 None:intergenic
TAGTGTAGTGAGAGTGAGTA+GGG 0.523593 5_4:+16262244 None:intergenic
ATCTTCATTCCCTACATCGC+TGG 0.524652 5_4:-16258826 Msa0840520:CDS
TCACTGGAAATGGGGACACT+TGG 0.526145 5_4:-16258161 Msa0840520:CDS
GGACGGATTAGGACTTCGTT+CGG 0.527260 5_4:-16257968 Msa0840520:CDS
TTGTGTGTCGGGTTCACAGT+TGG 0.527867 5_4:-16258004 Msa0840520:CDS
GTAGTGAGAGTGAGTAGGGT+GGG 0.528498 5_4:+16262248 None:intergenic
CTGGTGGTGCTGTTGCTGCA+GGG 0.528747 5_4:-16257883 Msa0840520:CDS
AGAGCTGCAGGTTTGTGTGT+CGG 0.529302 5_4:-16258016 Msa0840520:CDS
CACGGTCATGGTCATGGTCA+AGG 0.531366 5_4:-16262006 Msa0840520:CDS
GAAGCTGAAGGTGGTGTCCT+TGG 0.531829 5_4:-16262042 Msa0840520:CDS
TCGGTGAAGATGCAGATCGT+TGG 0.534098 5_4:-16258235 Msa0840520:CDS
AAATATCCTCATGCTATTGG+AGG 0.534903 5_4:-16258442 Msa0840520:CDS
TGCCGTCGAGGTGGAAGGAA+AGG 0.538718 5_4:+16258932 None:intergenic
AGGAAAGAAAATAAAAGAGA+GGG 0.539601 5_4:+16262167 None:intergenic
GAAGGTGGTGTCCTTGGCCA+TGG 0.540959 5_4:-16262036 Msa0840520:CDS
GCTGGATTCTTCAAAGTCAC+AGG 0.541392 5_4:-16258850 Msa0840520:CDS
CGTGTCCATGTCCATGGCCA+AGG 0.543635 5_4:+16262025 None:intergenic
CGGTGAAGGCGCGGATCATG+AGG 0.544790 5_4:+16258752 None:intergenic
CGATAATGAGAGAAGCTCTC+CGG 0.546258 5_4:-16257849 Msa0840520:CDS
TTCCTTTCCTTCCACCTCGA+CGG 0.548596 5_4:-16258934 Msa0840520:CDS
TGCAGGTATAACAAACTCAC+TGG 0.550122 5_4:-16259045 Msa0840520:intron
AACGAAGTCCTAATCCGTCC+TGG 0.555456 5_4:+16257971 None:intergenic
CCTTGCATCATTCACAACAA+TGG 0.558736 5_4:-16258404 Msa0840520:CDS
TTTGGAAACATCAGTGATGC+TGG 0.565468 5_4:-16257902 Msa0840520:CDS
GGTGTCCTTGGCCATGGACA+TGG 0.565826 5_4:-16262030 Msa0840520:CDS
TGTAGTGAGAGTGAGTAGGG+TGG 0.566435 5_4:+16262247 None:intergenic
GTGACTTTGAAGAATCCAGC+CGG 0.572168 5_4:+16258853 None:intergenic
GAATGGAACAAAACTCATCC+TGG 0.572504 5_4:-16261721 Msa0840520:CDS
GCAGCTTCAGAAGTTGCTAA+AGG 0.575778 5_4:-16261976 Msa0840520:CDS
AGCATGAGGATATTTGAAGA+TGG 0.576279 5_4:+16258450 None:intergenic
GCATAAAGAAAATGTGTTGG+TGG 0.577106 5_4:-16257441 Msa0840520:three_prime_UTR
GCTACAACCTTTACTGCGCG+TGG 0.579631 5_4:-16258269 Msa0840520:CDS
GAAATTGCCGTCGAGGTGGA+AGG 0.582982 5_4:+16258927 None:intergenic
TATGCTTGGATGAGAGCTGC+AGG 0.590623 5_4:-16258028 Msa0840520:CDS
CTAGTGTAGTGAGAGTGAGT+AGG 0.590844 5_4:+16262243 None:intergenic
TTGGTTCAGTTGGGCCAGGA+CGG 0.593555 5_4:-16257985 Msa0840520:CDS
CAGCAGTAGCATGAAGTGAG+AGG 0.596792 5_4:+16258677 None:intergenic
CATGGACACGGTCATGGTCA+TGG 0.596886 5_4:-16262012 Msa0840520:CDS
GCAGCTCACACGCAGCATCT+CGG 0.598823 5_4:-16258775 Msa0840520:CDS
GAGGTAACCGTTGAAGCTGA+AGG 0.598999 5_4:-16262054 Msa0840520:CDS
CTTGGCCATGGACATGGACA+CGG 0.602060 5_4:-16262024 Msa0840520:CDS
ACAGTTGCAGCAACAGGTGT+AGG 0.603510 5_4:-16258892 Msa0840520:CDS
CATGACCGTGTCCATGTCCA+TGG 0.605139 5_4:+16262019 None:intergenic
GAGTAATGGTGAGAGGACAG+TGG 0.613645 5_4:+16262131 None:intergenic
TGACTTTGAAGAATCCAGCC+GGG 0.614345 5_4:+16258854 None:intergenic
CAGTAGCATGAAGTGAGAGG+CGG 0.616592 5_4:+16258680 None:intergenic
CATTCTTGAAGTGAAACAGT+AGG 0.619087 5_4:+16261739 None:intergenic
TAGTGAGAGTGAGTAGGGTG+GGG 0.619947 5_4:+16262249 None:intergenic
TGAAGCTGACTGATAATGAG+AGG 0.621573 5_4:+16261769 None:intergenic
TATGCATAAAGAAAATGTGT+TGG 0.624754 5_4:-16257444 Msa0840520:three_prime_UTR
CATGGACATGGACACGGTCA+TGG 0.624917 5_4:-16262018 Msa0840520:CDS
GAGTTGTTCCGGTGAAGGCG+CGG 0.634731 5_4:+16258743 None:intergenic
CAGAACAAAAGCAAATGCAA+TGG 0.636950 5_4:+16258331 None:intergenic
CGAAAATGAGATCGAATCAG+TGG 0.639897 5_4:+16258492 None:intergenic
TCAGAATGAGTAATGGTGAG+AGG 0.646029 5_4:+16262124 None:intergenic
GCAGTGACAATGAAACGAGT+GGG 0.647158 5_4:+16258290 None:intergenic
GAGGGATGAATGGTGGTGCA+TGG 0.650033 5_4:-16257733 Msa0840520:three_prime_UTR
GAATCTAAACCAGAAACCAC+CGG 0.650603 5_4:+16257830 None:intergenic
TTGGGAAATTGCCGTCGAGG+TGG 0.658482 5_4:+16258923 None:intergenic
GGACACAGTCACTGGAAATG+GGG 0.658492 5_4:-16258169 Msa0840520:CDS
ACAGTGGTAAGAGAAGAAGG+AGG 0.659884 5_4:+16262147 None:intergenic
TAATGAGAGAAGCTCTCCGG+TGG 0.661539 5_4:-16257846 Msa0840520:CDS
AGCAGTGACAATGAAACGAG+TGG 0.669827 5_4:+16258289 None:intergenic
TCTTGAAGTGAAACAGTAGG+TGG 0.671080 5_4:+16261742 None:intergenic
CCATTCAGAGCACATCAACA+GGG 0.673190 5_4:-16258126 Msa0840520:CDS
ATGGATTGAGGGATGAATGG+TGG 0.673864 5_4:-16257740 Msa0840520:three_prime_UTR
GCAAGACCTCCAATAGCATG+AGG 0.680349 5_4:+16258436 None:intergenic
CCATTGTTGTGAATGATGCA+AGG 0.682905 5_4:+16258404 None:intergenic
GTAACCGTTGAAGCTGAAGG+TGG 0.694916 5_4:-16262051 Msa0840520:CDS
GCGCGTGGTTAAGATGAACT+CGG 0.697491 5_4:-16258254 Msa0840520:CDS
GGTCATGGTCATGGTCAAGG+TGG 0.721186 5_4:-16262003 Msa0840520:CDS
GGAAACATCAGTGATGCTGG+TGG 0.756197 5_4:-16257899 Msa0840520:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTAAAATAATAATTTTTA+TGG + chr5_4:16258541-16258560 None:intergenic 0.0%
!!! AAATTATTATTTTAATAAAA+TGG - chr5_4:16258544-16258563 Msa0840520:CDS 0.0%
!! AATATAAAAAACATAACTTA+GGG + chr5_4:16258034-16258053 None:intergenic 10.0%
!! AAATATAAAAAACATAACTT+AGG + chr5_4:16258035-16258054 None:intergenic 10.0%
!! AAAATATAAACTTACAAATA+GGG + chr5_4:16258097-16258116 None:intergenic 10.0%
!! AAAAATATAAACTTACAAAT+AGG + chr5_4:16258098-16258117 None:intergenic 10.0%
!!! TTTAATAAAAGTATCTATTA+AGG - chr5_4:16258284-16258303 Msa0840520:CDS 10.0%
!! ATTAAATAAATAATATTGGT+GGG + chr5_4:16258487-16258506 None:intergenic 10.0%
!! TATTAAATAAATAATATTGG+TGG + chr5_4:16258488-16258507 None:intergenic 10.0%
!! GTCTATTAAATAAATAATAT+TGG + chr5_4:16258491-16258510 None:intergenic 10.0%
!! AAAAGGAAAAAAAAAATTAA+GGG + chr5_4:16258625-16258644 None:intergenic 10.0%
!! AAAAAGGAAAAAAAAAATTA+AGG + chr5_4:16258626-16258645 None:intergenic 10.0%
!! AAAATTAATTATGTAAAAAG+TGG - chr5_4:16259855-16259874 Msa0840520:intron 10.0%
!!! TTTTAATAATAGTACCTAAT+AGG - chr5_4:16258413-16258432 Msa0840520:CDS 15.0%
!!! ATTTTTGTTGTATATATCAA+TGG + chr5_4:16258954-16258973 None:intergenic 15.0%
!! CAAAATTCTGAATATTTATA+AGG + chr5_4:16259168-16259187 None:intergenic 15.0%
!!! TGTTGATTCAAAATTTTATA+AGG + chr5_4:16259228-16259247 None:intergenic 15.0%
!!! AAAGTGTGATTTTATTTTAT+AGG - chr5_4:16259356-16259375 Msa0840520:intron 15.0%
!!! AAGTGTGATTTTATTTTATA+GGG - chr5_4:16259357-16259376 Msa0840520:intron 15.0%
!! TGAGGATAATATTAATATTA+GGG + chr5_4:16259431-16259450 None:intergenic 15.0%
!! TTGAGGATAATATTAATATT+AGG + chr5_4:16259432-16259451 None:intergenic 15.0%
!! AATATTAATATTATCCTCAA+CGG - chr5_4:16259432-16259451 Msa0840520:intron 15.0%
!! TGTAATTAAATATTTACACT+AGG - chr5_4:16259530-16259549 Msa0840520:intron 15.0%
!!! TATGTAAATATTTTTACACT+AGG - chr5_4:16259827-16259846 Msa0840520:intron 15.0%
!! TGCTATGTAAAAAAAAAAAA+AGG - chr5_4:16259898-16259917 Msa0840520:intron 15.0%
!! GCTATGTAAAAAAAAAAAAA+GGG - chr5_4:16259899-16259918 Msa0840520:intron 15.0%
!!! GTAAATTTGAAATTAATTGT+CGG - chr5_4:16259946-16259965 Msa0840520:intron 15.0%
!!! TTTTTAAACAATTATTGTCT+AGG - chr5_4:16260058-16260077 Msa0840520:intron 15.0%
!!! TTTTAAACAATTATTGTCTA+GGG - chr5_4:16260059-16260078 Msa0840520:intron 15.0%
!! TCAAGTACAATAATATAAAA+TGG - chr5_4:16260099-16260118 Msa0840520:intron 15.0%
!! AAATCAAATAAAAATTCCAA+AGG + chr5_4:16260143-16260162 None:intergenic 15.0%
!!! TTTCTTTTTAATTTAAGTTG+AGG - chr5_4:16262131-16262150 Msa0840520:five_prime_UTR 15.0%
!! AGAAAATAAGAAAGAAAAAG+GGG + chr5_4:16257588-16257607 None:intergenic 20.0%
!! GAGAAAATAAGAAAGAAAAA+GGG + chr5_4:16257589-16257608 None:intergenic 20.0%
!! AGAGAAAATAAGAAAGAAAA+AGG + chr5_4:16257590-16257609 None:intergenic 20.0%
!!! TCAATTAGATATTTTGTTAG+AGG + chr5_4:16258462-16258481 None:intergenic 20.0%
!!! ACAAAAATGACCTTATTTTA+TGG + chr5_4:16258742-16258761 None:intergenic 20.0%
!!! AAGTGTGATTTTATTTTGTA+GGG + chr5_4:16259199-16259218 None:intergenic 20.0%
!!! AAAGTGTGATTTTATTTTGT+AGG + chr5_4:16259200-16259219 None:intergenic 20.0%
!!! GTTGATGGAAAAATTTTATA+GGG + chr5_4:16259259-16259278 None:intergenic 20.0%
!!! TGTTGATGGAAAAATTTTAT+AGG + chr5_4:16259260-16259279 None:intergenic 20.0%
!!! AAAATTTCCATCAACATTTT+TGG - chr5_4:16259296-16259315 Msa0840520:intron 20.0%
!! ACAAAACTGTGAATATTTAT+AGG - chr5_4:16259387-16259406 Msa0840520:intron 20.0%
!! CAAAACTGTGAATATTTATA+GGG - chr5_4:16259388-16259407 Msa0840520:intron 20.0%
!! ATATTTATTGGAGATCTTTA+AGG + chr5_4:16259768-16259787 None:intergenic 20.0%
!! AATATTTACGTAAATTGCTT+TGG - chr5_4:16260386-16260405 Msa0840520:intron 20.0%
!! ATATTTACGTAAATTGCTTT+GGG - chr5_4:16260387-16260406 Msa0840520:intron 20.0%
!! AACTATTAAACGATATGAAA+CGG - chr5_4:16260410-16260429 Msa0840520:intron 20.0%
!! TCATGACAAAATATAAATGT+AGG + chr5_4:16260450-16260469 None:intergenic 20.0%
!! AAGAAGAAAAAACTAATGAA+TGG - chr5_4:16261923-16261942 Msa0840520:CDS 20.0%
!!! TTGTATGATTGATTTTAGTT+AGG - chr5_4:16262052-16262071 Msa0840520:CDS 20.0%
!!! TTTAATTTAAGTTGAGGATT+TGG - chr5_4:16262137-16262156 Msa0840520:five_prime_UTR 20.0%
! TGTTTAGGAAAAACAACAAA+AGG + chr5_4:16257476-16257495 None:intergenic 25.0%
! AGGAAAGAAAATAAAAGAGA+GGG + chr5_4:16257518-16257537 None:intergenic 25.0%
! AAAATAAGAAAGAAAAAGGG+GGG + chr5_4:16257586-16257605 None:intergenic 25.0%
! GAAAATAAGAAAGAAAAAGG+GGG + chr5_4:16257587-16257606 None:intergenic 25.0%
! TATAATGGTTATGAAGAAGT+TGG - chr5_4:16257799-16257818 Msa0840520:exon 25.0%
! TCTTATTAGTGTATTGTCAT+TGG + chr5_4:16258321-16258340 None:intergenic 25.0%
!!! ATTTTAATAAAATGGTGACG+TGG - chr5_4:16258552-16258571 Msa0840520:CDS 25.0%
! ATTAAGACCTCATTCTTAAA+TGG + chr5_4:16258580-16258599 None:intergenic 25.0%
!!! TTTTTTTCCTTTTTCCACAA+TGG - chr5_4:16258632-16258651 Msa0840520:CDS 25.0%
!! AGTCTTGAACATTTAAGATT+TGG + chr5_4:16258674-16258693 None:intergenic 25.0%
!! TATAGTTTGCAATCATGAAA+AGG - chr5_4:16258799-16258818 Msa0840520:CDS 25.0%
!!! TGAAAGTGGTTTTTGAAAAA+AGG + chr5_4:16258882-16258901 None:intergenic 25.0%
!!! TAATAAATAGGGTTGATGTT+CGG + chr5_4:16258913-16258932 None:intergenic 25.0%
!! GTATATATCAATGGTTGATA+TGG + chr5_4:16258945-16258964 None:intergenic 25.0%
!!! CTCTCTCTTGTTTTATATTT+TGG + chr5_4:16258992-16259011 None:intergenic 25.0%
!! AAATTTTCAAAAGATGACAC+AGG + chr5_4:16259102-16259121 None:intergenic 25.0%
! AGACACTAGTATTAATATCA+AGG - chr5_4:16259124-16259143 Msa0840520:intron 25.0%
! GACACTAGTATTAATATCAA+GGG - chr5_4:16259125-16259144 Msa0840520:intron 25.0%
! TCAAGGGTTAATTAAGTAAA+TGG - chr5_4:16259141-16259160 Msa0840520:intron 25.0%
!!! GTTGATGGAAATTTTTTACA+GGG + chr5_4:16259291-16259310 None:intergenic 25.0%
!!! TGTTGATGGAAATTTTTTAC+AGG + chr5_4:16259292-16259311 None:intergenic 25.0%
!! CATTTTCCTTAACCATTTTA+GGG + chr5_4:16259323-16259342 None:intergenic 25.0%
!! ACATTTTCCTTAACCATTTT+AGG + chr5_4:16259324-16259343 None:intergenic 25.0%
! TAAAATACTATAGTCTCAAG+TGG + chr5_4:16259485-16259504 None:intergenic 25.0%
! ACATGCATTTAATCAAATCA+TGG - chr5_4:16259711-16259730 Msa0840520:intron 25.0%
! CATGCATTTAATCAAATCAT+GGG - chr5_4:16259712-16259731 Msa0840520:intron 25.0%
! AGATCTCCAATAAATATGAT+TGG - chr5_4:16259771-16259790 Msa0840520:intron 25.0%
! ATAGGTCCAATCATATTTAT+TGG + chr5_4:16259780-16259799 None:intergenic 25.0%
! CATAAAAGTTTCTTACACAT+AGG + chr5_4:16259798-16259817 None:intergenic 25.0%
!! CTATGTGTAAGAAACTTTTA+TGG - chr5_4:16259796-16259815 Msa0840520:intron 25.0%
!!! GTAAATATTTTTACACTAGG+TGG - chr5_4:16259830-16259849 Msa0840520:intron 25.0%
!!! AGTGGTGTATACTTTTTTTA+AGG - chr5_4:16259873-16259892 Msa0840520:intron 25.0%
! ATATTTCCAAAAGAAACCTT+TGG - chr5_4:16260124-16260143 Msa0840520:intron 25.0%
!! AAAATTCCAAAGGTTTCTTT+TGG + chr5_4:16260133-16260152 None:intergenic 25.0%
! GATCAAATCATAATTCTTCT+TGG + chr5_4:16260169-16260188 None:intergenic 25.0%
!!! TTGATCAATCAATGTTTTGA+AGG - chr5_4:16260183-16260202 Msa0840520:intron 25.0%
!!! TGATCAATCAATGTTTTGAA+GGG - chr5_4:16260184-16260203 Msa0840520:intron 25.0%
!! ATTTTGTCATGATGTAACAT+TGG - chr5_4:16260458-16260477 Msa0840520:intron 25.0%
! ATTAGCACATATGTAAACTT+TGG + chr5_4:16260603-16260622 None:intergenic 25.0%
!!! TGCTGAAAACTTTGAAATTA+TGG + chr5_4:16260668-16260687 None:intergenic 25.0%
!! AATTTCAAAGTTTTCAGCAT+TGG - chr5_4:16260669-16260688 Msa0840520:intron 25.0%
! GATATTTGAAGATGGAAAAA+GGG + chr5_4:16261227-16261246 None:intergenic 25.0%
!!! AAAAACTAATGAATGGATTG+AGG - chr5_4:16261930-16261949 Msa0840520:CDS 25.0%
!!! AAAACTAATGAATGGATTGA+GGG - chr5_4:16261931-16261950 Msa0840520:CDS 25.0%
! TATGCATAAAGAAAATGTGT+TGG - chr5_4:16262238-16262257 Msa0840520:five_prime_UTR 25.0%
!!! GTTGTGTTTGTGTTTTGTTT+AGG + chr5_4:16257491-16257510 None:intergenic 30.0%
GAGGAAAGAAAATAAAAGAG+AGG + chr5_4:16257519-16257538 None:intergenic 30.0%
CCAAAAGTTTCAAATCTAGA+AGG + chr5_4:16257832-16257851 None:intergenic 30.0%
!! CCTTCTAGATTTGAAACTTT+TGG - chr5_4:16257829-16257848 Msa0840520:CDS 30.0%
!! CTAGATTTGAAACTTTTGGT+TGG - chr5_4:16257833-16257852 Msa0840520:CDS 30.0%
CATAACTTAGGGAAAAAATG+TGG + chr5_4:16258023-16258042 None:intergenic 30.0%
ACAGTGATAGTTTCCTAAAA+AGG - chr5_4:16258216-16258235 Msa0840520:CDS 30.0%
! CCATTTAAAGAGTCCTTTTT+AGG + chr5_4:16258232-16258251 None:intergenic 30.0%
CCTAAAAAGGACTCTTTAAA+TGG - chr5_4:16258229-16258248 Msa0840520:CDS 30.0%
TAAAAGTGATGTGTCAATGT+GGG + chr5_4:16258387-16258406 None:intergenic 30.0%
TTAAAAGTGATGTGTCAATG+TGG + chr5_4:16258388-16258407 None:intergenic 30.0%
TCTAATAGTTACTTCCATTG+TGG + chr5_4:16258649-16258668 None:intergenic 30.0%
! TATTTTATGGAACCCTATGT+TGG + chr5_4:16258729-16258748 None:intergenic 30.0%
ACATAGGGTTCCATAAAATA+AGG - chr5_4:16258729-16258748 Msa0840520:CDS 30.0%
TTCATGATTGCAAACTATAG+TGG + chr5_4:16258798-16258817 None:intergenic 30.0%
TCAACCCTATTTATTAACCT+TGG - chr5_4:16258917-16258936 Msa0840520:CDS 30.0%
GGTACCAAGGTTAATAAATA+GGG + chr5_4:16258924-16258943 None:intergenic 30.0%
TGGTACCAAGGTTAATAAAT+AGG + chr5_4:16258925-16258944 None:intergenic 30.0%
!!! AACATTTTTGGTCCCTAAAA+TGG - chr5_4:16259308-16259327 Msa0840520:intron 30.0%
AATTAAAGACTTAACCGTTG+AGG + chr5_4:16259449-16259468 None:intergenic 30.0%
TAAAAACAGCTTCATCTTGT+CGG + chr5_4:16260022-16260041 None:intergenic 30.0%
GCATATTAACGACCTTTAAA+TGG + chr5_4:16260304-16260323 None:intergenic 30.0%
! ATTTTGTGCTGTGAAAAACA+CGG - chr5_4:16260329-16260348 Msa0840520:intron 30.0%
ATTAAACGATATGAAACGGA+TGG - chr5_4:16260414-16260433 Msa0840520:intron 30.0%
AAAAGTAGATCTTACTGTGT+TGG - chr5_4:16260525-16260544 Msa0840520:intron 30.0%
TTACATATGTGCTAATGTAC+TGG - chr5_4:16260607-16260626 Msa0840520:intron 30.0%
! CGATTTTCAGTGGTTTAATT+TGG - chr5_4:16261127-16261146 Msa0840520:intron 30.0%
GGATATTTGAAGATGGAAAA+AGG + chr5_4:16261228-16261247 None:intergenic 30.0%
TTCAAATATCCTCATGCTAT+TGG - chr5_4:16261237-16261256 Msa0840520:intron 30.0%
CATGCAACAGTAGAAAAAAA+GGG - chr5_4:16262019-16262038 Msa0840520:CDS 30.0%
ATGCAACAGTAGAAAAAAAG+GGG - chr5_4:16262020-16262039 Msa0840520:CDS 30.0%
TTTCTTCATCCCAATGAAAG+AGG - chr5_4:16257609-16257628 Msa0840520:three_prime_UTR 35.0%
AGAGCTAGAGAAGCTTATAA+TGG - chr5_4:16257784-16257803 Msa0840520:three_prime_UTR 35.0%
ATAATGAGAGGAAAGACAAC+AGG + chr5_4:16257904-16257923 None:intergenic 35.0%
CATTCTTGAAGTGAAACAGT+AGG + chr5_4:16257946-16257965 None:intergenic 35.0%
CTACTGTTTCACTTCAAGAA+TGG - chr5_4:16257944-16257963 Msa0840520:CDS 35.0%
TGTGCTAGTGAATTTAGTCA+TGG + chr5_4:16258072-16258091 None:intergenic 35.0%
!!! GGTTTTTTTGCTAGAGAACT+TGG + chr5_4:16258182-16258201 None:intergenic 35.0%
AAATAAGTGATGTGTCACGT+GGG + chr5_4:16258257-16258276 None:intergenic 35.0%
TAAATAAGTGATGTGTCACG+TGG + chr5_4:16258258-16258277 None:intergenic 35.0%
!! ACTAATAAGAGCATCCACAA+TGG - chr5_4:16258331-16258350 Msa0840520:CDS 35.0%
! TTTTGTTAGAGGATCTCCAT+TGG + chr5_4:16258451-16258470 None:intergenic 35.0%
TAAGGGTCTTAAAAGATGCA+AGG + chr5_4:16258608-16258627 None:intergenic 35.0%
GTTACTTCCATTGTGGAAAA+AGG + chr5_4:16258642-16258661 None:intergenic 35.0%
! GCAAACTATAGTGGAACAAA+CGG + chr5_4:16258789-16258808 None:intergenic 35.0%
GGTTTGTAACAAAGCCATAA+AGG + chr5_4:16258830-16258849 None:intergenic 35.0%
ACCAACTTTACTCTTACTCA+AGG - chr5_4:16258847-16258866 Msa0840520:CDS 35.0%
CCAACTTTACTCTTACTCAA+GGG - chr5_4:16258848-16258867 Msa0840520:CDS 35.0%
CAAACATTTGTATACTCCCT+AGG + chr5_4:16259061-16259080 None:intergenic 35.0%
! GGGAGTATACAAATGTTTGT+CGG - chr5_4:16259062-16259081 Msa0840520:intron 35.0%
ACAGGGACTAAAAATGTTGA+TGG + chr5_4:16259274-16259293 None:intergenic 35.0%
TTAGGGACCAAAAATGTTGA+TGG + chr5_4:16259306-16259325 None:intergenic 35.0%
TTTGGTCCCTAAAATGGTTA+AGG - chr5_4:16259314-16259333 Msa0840520:intron 35.0%
ATGGTTAAGGAAAATGTCAC+AGG - chr5_4:16259327-16259346 Msa0840520:intron 35.0%
TGGTTAAGGAAAATGTCACA+GGG - chr5_4:16259328-16259347 Msa0840520:intron 35.0%
GAAAACAAGCATATTGCACA+TGG + chr5_4:16260252-16260271 None:intergenic 35.0%
CACCTCAGATATCCATTTAA+AGG - chr5_4:16260289-16260308 Msa0840520:intron 35.0%
GACCTTTAAATGGATATCTG+AGG + chr5_4:16260294-16260313 None:intergenic 35.0%
! TTTTGTGCTGTGAAAAACAC+GGG - chr5_4:16260330-16260349 Msa0840520:intron 35.0%
!! CAAAGTTTTCAGCATTGGAA+TGG - chr5_4:16260674-16260693 Msa0840520:intron 35.0%
! GCACAGTTTTTCATTAGACA+AGG - chr5_4:16260970-16260989 Msa0840520:intron 35.0%
AGAGCGATATTATGAGTCTT+TGG - chr5_4:16261097-16261116 Msa0840520:intron 35.0%
GAGCGATATTATGAGTCTTT+GGG - chr5_4:16261098-16261117 Msa0840520:intron 35.0%
!! AGTGGTTTAATTTGGCTTGT+TGG - chr5_4:16261135-16261154 Msa0840520:intron 35.0%
!! GTGGTTTAATTTGGCTTGTT+GGG - chr5_4:16261136-16261155 Msa0840520:intron 35.0%
AGCATGAGGATATTTGAAGA+TGG + chr5_4:16261235-16261254 None:intergenic 35.0%
AAATATCCTCATGCTATTGG+AGG - chr5_4:16261240-16261259 Msa0840520:intron 35.0%
!! CACAACAATGGCTATTTTCA+CGG - chr5_4:16261290-16261309 Msa0840520:intron 35.0%
!! ACAACAATGGCTATTTTCAC+GGG - chr5_4:16261291-16261310 Msa0840520:intron 35.0%
CAGAACAAAAGCAAATGCAA+TGG + chr5_4:16261354-16261373 None:intergenic 35.0%
!! CATTGCATTTGCTTTTGTTC+TGG - chr5_4:16261352-16261371 Msa0840520:intron 35.0%
TCAGGGTTTGGATTCTATTA+CGG - chr5_4:16261492-16261511 Msa0840520:intron 35.0%
!! AAGAAGGTGCTTTCTCTATA+TGG - chr5_4:16261631-16261650 Msa0840520:intron 35.0%
CTTTCTCTATATGGTATGCT+TGG - chr5_4:16261640-16261659 Msa0840520:intron 35.0%
! GGAATTGTTGTGTTGCTATT+TGG - chr5_4:16261762-16261781 Msa0840520:CDS 35.0%
GCATGCAACAGTAGAAAAAA+AGG - chr5_4:16262018-16262037 Msa0840520:CDS 35.0%
TGCAACAGTAGAAAAAAAGG+GGG - chr5_4:16262021-16262040 Msa0840520:CDS 35.0%
GCATAAAGAAAATGTGTTGG+TGG - chr5_4:16262241-16262260 Msa0840520:five_prime_UTR 35.0%
TAGTGTAGTGAGAGTGAGTA+GGG + chr5_4:16257441-16257460 None:intergenic 40.0%
TCAGAATGAGTAATGGTGAG+AGG + chr5_4:16257561-16257580 None:intergenic 40.0%
CAACGGTTACCTCTTTCATT+GGG + chr5_4:16257621-16257640 None:intergenic 40.0%
TCAACGGTTACCTCTTTCAT+TGG + chr5_4:16257622-16257641 None:intergenic 40.0%
! TGAAGCTGACTGATAATGAG+AGG + chr5_4:16257916-16257935 None:intergenic 40.0%
TCTTGAAGTGAAACAGTAGG+TGG + chr5_4:16257943-16257962 None:intergenic 40.0%
GAATGGAACAAAACTCATCC+TGG - chr5_4:16257961-16257980 Msa0840520:CDS 40.0%
! TCACTGTGAATGCTCTAAGT+GGG + chr5_4:16258203-16258222 None:intergenic 40.0%
! ATCACTGTGAATGCTCTAAG+TGG + chr5_4:16258204-16258223 None:intergenic 40.0%
AATAAGTGATGTGTCACGTG+GGG + chr5_4:16258256-16258275 None:intergenic 40.0%
AAAGATGAGAGTCTCCATTG+TGG + chr5_4:16258348-16258367 None:intergenic 40.0%
CGTGGATCCATTTAAGAATG+AGG - chr5_4:16258570-16258589 Msa0840520:CDS 40.0%
TTCAAGACTCTCCCAAGATA+AGG - chr5_4:16258685-16258704 Msa0840520:CDS 40.0%
ACACCATACCTCCTTATCTT+GGG + chr5_4:16258699-16258718 None:intergenic 40.0%
TGGTGTGACAAATCCAACAT+AGG - chr5_4:16258713-16258732 Msa0840520:CDS 40.0%
GGTGTGACAAATCCAACATA+GGG - chr5_4:16258714-16258733 Msa0840520:CDS 40.0%
! ATGAAAAGGCGTGTCCTTTA+TGG - chr5_4:16258813-16258832 Msa0840520:CDS 40.0%
CCCTTGAGTAAGAGTAAAGT+TGG + chr5_4:16258851-16258870 None:intergenic 40.0%
!! AAATAGGGTTGATGTTCGGT+GGG + chr5_4:16258909-16258928 None:intergenic 40.0%
!! TAAATAGGGTTGATGTTCGG+TGG + chr5_4:16258910-16258929 None:intergenic 40.0%
! CAATGGTTGATATGGTACCA+AGG + chr5_4:16258937-16258956 None:intergenic 40.0%
ACATTTGTATACTCCCTAGG+AGG + chr5_4:16259058-16259077 None:intergenic 40.0%
AAAGATGACACAGGAGTTTC+AGG + chr5_4:16259093-16259112 None:intergenic 40.0%
CAAGCATATTGCACATGGAA+AGG + chr5_4:16260247-16260266 None:intergenic 40.0%
! AATGTACTGGTGAATTGTGC+AGG - chr5_4:16260620-16260639 Msa0840520:intron 40.0%
TGCAGGTATAACAAACTCAC+TGG - chr5_4:16260637-16260656 Msa0840520:intron 40.0%
TGGAATGGACATCAATTGCT+TGG - chr5_4:16260689-16260708 Msa0840520:intron 40.0%
GGAATGGACATCAATTGCTT+GGG - chr5_4:16260690-16260709 Msa0840520:intron 40.0%
AAGGAAAGGAAGCCAAGAAT+TGG + chr5_4:16260739-16260758 None:intergenic 40.0%
! CTGCAACTGTGATGAGTTTT+GGG + chr5_4:16260780-16260799 None:intergenic 40.0%
TGCTTTCTTGAGAGTTGTTC+CGG + chr5_4:16260953-16260972 None:intergenic 40.0%
CATCGAGTTCGTGTATCATA+TGG + chr5_4:16261071-16261090 None:intergenic 40.0%
!! TGGGTTGTTTCGATTTTCAG+TGG - chr5_4:16261117-16261136 Msa0840520:intron 40.0%
CGAAAATGAGATCGAATCAG+TGG + chr5_4:16261193-16261212 None:intergenic 40.0%
! ATTCGATCTCATTTTCGTCG+AGG - chr5_4:16261196-16261215 Msa0840520:intron 40.0%
CCATTGTTGTGAATGATGCA+AGG + chr5_4:16261281-16261300 None:intergenic 40.0%
CCTTGCATCATTCACAACAA+TGG - chr5_4:16261278-16261297 Msa0840520:intron 40.0%
! GGTGGTGTGATTTTCATTGT+TGG - chr5_4:16261312-16261331 Msa0840520:intron 40.0%
TTGTTGGACAGCTTTGCATT+AGG - chr5_4:16261328-16261347 Msa0840520:intron 40.0%
AACGAGTGGGAAAAGGAAAT+AGG + chr5_4:16261382-16261401 None:intergenic 40.0%
ACAATGAAACGAGTGGGAAA+AGG + chr5_4:16261389-16261408 None:intergenic 40.0%
! TTTTTCTCGCTTCTGTCTTC+AGG - chr5_4:16261474-16261493 Msa0840520:intron 40.0%
! TTTTCTCGCTTCTGTCTTCA+GGG - chr5_4:16261475-16261494 Msa0840520:intron 40.0%
!! GATTTTGCACGCTTTTGGAA+GGG - chr5_4:16261578-16261597 Msa0840520:intron 40.0%
TTTGGAAACATCAGTGATGC+TGG - chr5_4:16261780-16261799 Msa0840520:CDS 40.0%
GAATCTAAACCAGAAACCAC+CGG + chr5_4:16261855-16261874 None:intergenic 40.0%
!! TGAATGGATTGAGGGATGAA+TGG - chr5_4:16261939-16261958 Msa0840520:CDS 40.0%
GCAACAGTAGAAAAAAAGGG+GGG - chr5_4:16262022-16262041 Msa0840520:CDS 40.0%
CAACAGTAGAAAAAAAGGGG+GGG - chr5_4:16262023-16262042 Msa0840520:CDS 40.0%
CTAGTGTAGTGAGAGTGAGT+AGG + chr5_4:16257442-16257461 None:intergenic 45.0%
ACAGTGGTAAGAGAAGAAGG+AGG + chr5_4:16257538-16257557 None:intergenic 45.0%
AGGACAGTGGTAAGAGAAGA+AGG + chr5_4:16257541-16257560 None:intergenic 45.0%
GCAGCTTCAGAAGTTGCTAA+AGG - chr5_4:16257706-16257725 Msa0840520:three_prime_UTR 45.0%
ACAGCTCTGTTGTGTAAGTC+AGG + chr5_4:16257754-16257773 None:intergenic 45.0%
GGAGTGGTTGAGTACCTATT+AGG + chr5_4:16258430-16258449 None:intergenic 45.0%
TAGGTACTCAACCACTCCAA+TGG - chr5_4:16258432-16258451 Msa0840520:CDS 45.0%
TTAGAGGATCTCCATTGGAG+TGG + chr5_4:16258446-16258465 None:intergenic 45.0%
AAGACTCTCCCAAGATAAGG+AGG - chr5_4:16258688-16258707 Msa0840520:CDS 45.0%
TCTCCCAAGATAAGGAGGTA+TGG - chr5_4:16258693-16258712 Msa0840520:CDS 45.0%
CACACCATACCTCCTTATCT+TGG + chr5_4:16258700-16258719 None:intergenic 45.0%
! GTTCGGTGGGTAAATGAAAG+TGG + chr5_4:16258896-16258915 None:intergenic 45.0%
TGATCTATGCTCACCTCCTA+GGG - chr5_4:16259042-16259061 Msa0840520:CDS 45.0%
CGGCACTATACATTGTCGTT+AGG + chr5_4:16260002-16260021 None:intergenic 45.0%
ACATCAATTGCTTGGGCTAC+AGG - chr5_4:16260697-16260716 Msa0840520:intron 45.0%
! GCTGCAACTGTGATGAGTTT+TGG + chr5_4:16260781-16260800 None:intergenic 45.0%
! AGGAGTTTTCTTCTGTCTCC+CGG - chr5_4:16260810-16260829 Msa0840520:intron 45.0%
! TGACTTTGAAGAATCCAGCC+GGG + chr5_4:16260831-16260850 None:intergenic 45.0%
! GTGACTTTGAAGAATCCAGC+CGG + chr5_4:16260832-16260851 None:intergenic 45.0%
GCTGGATTCTTCAAAGTCAC+AGG - chr5_4:16260832-16260851 Msa0840520:intron 45.0%
ATCTTCATTCCCTACATCGC+TGG - chr5_4:16260856-16260875 Msa0840520:intron 45.0%
!! ACAATGGCTATTTTCACGGG+TGG - chr5_4:16261294-16261313 Msa0840520:intron 45.0%
GCAGTGACAATGAAACGAGT+GGG + chr5_4:16261395-16261414 None:intergenic 45.0%
AGCAGTGACAATGAAACGAG+TGG + chr5_4:16261396-16261415 None:intergenic 45.0%
ATCTTAACCACGCGCAGTAA+AGG + chr5_4:16261423-16261442 None:intergenic 45.0%
TCTATTACGGACACAGTCAC+TGG - chr5_4:16261505-16261524 Msa0840520:intron 45.0%
CCATTCAGAGCACATCAACA+GGG - chr5_4:16261556-16261575 Msa0840520:intron 45.0%
! ACAGGGATTTTGCACGCTTT+TGG - chr5_4:16261573-16261592 Msa0840520:intron 45.0%
! GGATTTTGCACGCTTTTGGA+AGG - chr5_4:16261577-16261596 Msa0840520:intron 45.0%
GGTGTTAGATTGTGCTCCAT+CGG - chr5_4:16261605-16261624 Msa0840520:intron 45.0%
GTGTTAGATTGTGCTCCATC+GGG - chr5_4:16261606-16261625 Msa0840520:intron 45.0%
!! AAAGCACCTTCTTTTCCCGA+TGG + chr5_4:16261624-16261643 None:intergenic 45.0%
! GGTTCACAGTTGGTTCAGTT+GGG - chr5_4:16261688-16261707 Msa0840520:intron 45.0%
! GCTTTTTGCACTGCTATTGC+TGG - chr5_4:16261741-16261760 Msa0840520:CDS 45.0%
CGATAATGAGAGAAGCTCTC+CGG - chr5_4:16261833-16261852 Msa0840520:CDS 45.0%
! ATGGATTGAGGGATGAATGG+TGG - chr5_4:16261942-16261961 Msa0840520:CDS 45.0%
!! ACAAAAATTAAATTTAATAT+TGG - chr5_4:16258966-16258985 Msa0840520:CDS 5.0%
!!! ATTAATCTTTTTTTTTATTT+TGG + chr5_4:16259667-16259686 None:intergenic 5.0%
GTAGTGAGAGTGAGTAGGGT+GGG + chr5_4:16257437-16257456 None:intergenic 50.0%
TGTAGTGAGAGTGAGTAGGG+TGG + chr5_4:16257438-16257457 None:intergenic 50.0%
GAGTAATGGTGAGAGGACAG+TGG + chr5_4:16257554-16257573 None:intergenic 50.0%
!! GGGGGTGTCAGAATGAGTAA+TGG + chr5_4:16257568-16257587 None:intergenic 50.0%
GAGGTAACCGTTGAAGCTGA+AGG - chr5_4:16257628-16257647 Msa0840520:three_prime_UTR 50.0%
GTAACCGTTGAAGCTGAAGG+TGG - chr5_4:16257631-16257650 Msa0840520:three_prime_UTR 50.0%
GACACCACCTTCAGCTTCAA+CGG + chr5_4:16257638-16257657 None:intergenic 50.0%
!! TTTTGAGAGCAGTGAGTGCC+AGG + chr5_4:16257982-16258001 None:intergenic 50.0%
TGGCACTCACTGCTCTCAAA+AGG - chr5_4:16257981-16258000 Msa0840520:CDS 50.0%
GTGATCTATGCTCACCTCCT+AGG - chr5_4:16259041-16259060 Msa0840520:CDS 50.0%
TGTCGGCAGTTAGCACATCT+TGG - chr5_4:16259963-16259982 Msa0840520:intron 50.0%
GCCATAGCTGCACCAATTCT+TGG - chr5_4:16260724-16260743 Msa0840520:intron 50.0%
GCCAAGAATTGGTGCAGCTA+TGG + chr5_4:16260728-16260747 None:intergenic 50.0%
TTCCTTTCCTTCCACCTCGA+CGG - chr5_4:16260748-16260767 Msa0840520:intron 50.0%
!!! GTTTTGGGAAATTGCCGTCG+AGG + chr5_4:16260765-16260784 None:intergenic 50.0%
CTCATCACAGTTGCAGCAAC+AGG - chr5_4:16260784-16260803 Msa0840520:intron 50.0%
ACAGTTGCAGCAACAGGTGT+AGG - chr5_4:16260790-16260809 Msa0840520:intron 50.0%
GCTATGATGCCAGCGATGTA+GGG + chr5_4:16260868-16260887 None:intergenic 50.0%
TGCTATGATGCCAGCGATGT+AGG + chr5_4:16260869-16260888 None:intergenic 50.0%
CTTGAGAGTTGTTCCGGTGA+AGG + chr5_4:16260947-16260966 None:intergenic 50.0%
AGTAGCATGAAGTGAGAGGC+GGG + chr5_4:16261004-16261023 None:intergenic 50.0%
CAGTAGCATGAAGTGAGAGG+CGG + chr5_4:16261005-16261024 None:intergenic 50.0%
CAGCAGTAGCATGAAGTGAG+AGG + chr5_4:16261008-16261027 None:intergenic 50.0%
TCACTTCATGCTACTGCTGC+TGG - chr5_4:16261009-16261028 Msa0840520:intron 50.0%
!! GCTACTGCTGCTGGTTGTTT+TGG - chr5_4:16261018-16261037 Msa0840520:intron 50.0%
!!! ACTGCTGCTGGTTGTTTTGG+TGG - chr5_4:16261021-16261040 Msa0840520:intron 50.0%
GCAAGACCTCCAATAGCATG+AGG + chr5_4:16261249-16261268 None:intergenic 50.0%
GCGCGTGGTTAAGATGAACT+CGG - chr5_4:16261428-16261447 Msa0840520:intron 50.0%
TCGGTGAAGATGCAGATCGT+TGG - chr5_4:16261447-16261466 Msa0840520:intron 50.0%
CGGTGAAGATGCAGATCGTT+GGG - chr5_4:16261448-16261467 Msa0840520:intron 50.0%
TCGCTTCTGTCTTCAGGGTT+TGG - chr5_4:16261480-16261499 Msa0840520:intron 50.0%
ACGGACACAGTCACTGGAAA+TGG - chr5_4:16261511-16261530 Msa0840520:intron 50.0%
CGGACACAGTCACTGGAAAT+GGG - chr5_4:16261512-16261531 Msa0840520:intron 50.0%
GGACACAGTCACTGGAAATG+GGG - chr5_4:16261513-16261532 Msa0840520:intron 50.0%
TCACTGGAAATGGGGACACT+TGG - chr5_4:16261521-16261540 Msa0840520:intron 50.0%
GCCATTCAGAGCACATCAAC+AGG - chr5_4:16261555-16261574 Msa0840520:intron 50.0%
! CCCTGTTGATGTGCTCTGAA+TGG + chr5_4:16261559-16261578 None:intergenic 50.0%
!! GCACGCTTTTGGAAGGGTTT+TGG - chr5_4:16261584-16261603 Msa0840520:intron 50.0%
TGTGCTCCATCGGGAAAAGA+AGG - chr5_4:16261615-16261634 Msa0840520:intron 50.0%
TATGCTTGGATGAGAGCTGC+AGG - chr5_4:16261654-16261673 Msa0840520:intron 50.0%
AGAGCTGCAGGTTTGTGTGT+CGG - chr5_4:16261666-16261685 Msa0840520:intron 50.0%
TTGTGTGTCGGGTTCACAGT+TGG - chr5_4:16261678-16261697 Msa0840520:intron 50.0%
! GGGTTCACAGTTGGTTCAGT+TGG - chr5_4:16261687-16261706 Msa0840520:intron 50.0%
AACGAAGTCCTAATCCGTCC+TGG + chr5_4:16261714-16261733 None:intergenic 50.0%
!! GGACGGATTAGGACTTCGTT+CGG - chr5_4:16261714-16261733 Msa0840520:CDS 50.0%
GGAAACATCAGTGATGCTGG+TGG - chr5_4:16261783-16261802 Msa0840520:CDS 50.0%
TAATGAGAGAAGCTCTCCGG+TGG - chr5_4:16261836-16261855 Msa0840520:CDS 50.0%
GAAGCTGAAGGTGGTGTCCT+TGG - chr5_4:16257640-16257659 Msa0840520:three_prime_UTR 55.0%
CTTGGCCATGGACATGGACA+CGG - chr5_4:16257658-16257677 Msa0840520:three_prime_UTR 55.0%
CATGACCGTGTCCATGTCCA+TGG + chr5_4:16257666-16257685 None:intergenic 55.0%
CATGGACATGGACACGGTCA+TGG - chr5_4:16257664-16257683 Msa0840520:three_prime_UTR 55.0%
CATGGACACGGTCATGGTCA+TGG - chr5_4:16257670-16257689 Msa0840520:three_prime_UTR 55.0%
CACGGTCATGGTCATGGTCA+AGG - chr5_4:16257676-16257695 Msa0840520:three_prime_UTR 55.0%
GGTCATGGTCATGGTCAAGG+TGG - chr5_4:16257679-16257698 Msa0840520:three_prime_UTR 55.0%
GAAATTGCCGTCGAGGTGGA+AGG + chr5_4:16260758-16260777 None:intergenic 55.0%
TTGGGAAATTGCCGTCGAGG+TGG + chr5_4:16260762-16260781 None:intergenic 55.0%
! GTTTTCTTCTGTCTCCCGGC+TGG - chr5_4:16260814-16260833 Msa0840520:intron 55.0%
ATGCTGCGTGTGAGCTGCAT+TGG + chr5_4:16260905-16260924 None:intergenic 55.0%
GCTACAACCTTTACTGCGCG+TGG - chr5_4:16261413-16261432 Msa0840520:intron 55.0%
GAGCTGCAGGTTTGTGTGTC+GGG - chr5_4:16261667-16261686 Msa0840520:intron 55.0%
! ACAGTTGGTTCAGTTGGGCC+AGG - chr5_4:16261693-16261712 Msa0840520:CDS 55.0%
TTGGTTCAGTTGGGCCAGGA+CGG - chr5_4:16261697-16261716 Msa0840520:CDS 55.0%
AGAAGCTCTCCGGTGGTTTC+TGG - chr5_4:16261843-16261862 Msa0840520:CDS 55.0%
! GAGGGATGAATGGTGGTGCA+TGG - chr5_4:16261949-16261968 Msa0840520:CDS 55.0%
GAAGGTGGTGTCCTTGGCCA+TGG - chr5_4:16257646-16257665 Msa0840520:three_prime_UTR 60.0%
GGTGTCCTTGGCCATGGACA+TGG - chr5_4:16257652-16257671 Msa0840520:three_prime_UTR 60.0%
CGTGTCCATGTCCATGGCCA+AGG + chr5_4:16257660-16257679 None:intergenic 60.0%
TGCCGTCGAGGTGGAAGGAA+AGG + chr5_4:16260753-16260772 None:intergenic 60.0%
! AGCTGCATTGGCGACTGTGC+TGG + chr5_4:16260893-16260912 None:intergenic 60.0%
GCAGCTCACACGCAGCATCT+CGG - chr5_4:16260907-16260926 Msa0840520:intron 60.0%
CTCATGATCCGCGCCTTCAC+CGG - chr5_4:16260931-16260950 Msa0840520:intron 60.0%
GAGTTGTTCCGGTGAAGGCG+CGG + chr5_4:16260942-16260961 None:intergenic 60.0%
! CAGTTGGGCCAGGACGGATT+AGG - chr5_4:16261703-16261722 Msa0840520:CDS 60.0%
!! CTGGTGGTGCTGTTGCTGCA+GGG - chr5_4:16261799-16261818 Msa0840520:CDS 60.0%
! CGGTGAAGGCGCGGATCATG+AGG + chr5_4:16260933-16260952 None:intergenic 65.0%
!! GCTGGTGGTGCTGTTGCTGC+AGG - chr5_4:16261798-16261817 Msa0840520:CDS 65.0%
Chromosome Type Strat End Strand Name
chr5_4 gene 16257434 16262270 16257434 ID=Msa0840520;Name=Msa0840520
chr5_4 mRNA 16257434 16262270 16257434 ID=Msa0840520-mRNA-1;Parent=Msa0840520;Name=Msa0840520-mRNA-1;_AED=0.00;_eAED=0.00;_QI=188|1|1|1|1|1|2|374|548
chr5_4 exon 16257434 16259062 16257434 ID=Msa0840520-mRNA-1:exon:6999;Parent=Msa0840520-mRNA-1
chr5_4 exon 16261691 16262270 16261691 ID=Msa0840520-mRNA-1:exon:6998;Parent=Msa0840520-mRNA-1
chr5_4 five_prime_UTR 16262083 16262270 16262083 ID=Msa0840520-mRNA-1:five_prime_utr;Parent=Msa0840520-mRNA-1
chr5_4 CDS 16261691 16262082 16261691 ID=Msa0840520-mRNA-1:cds;Parent=Msa0840520-mRNA-1
chr5_4 CDS 16257808 16259062 16257808 ID=Msa0840520-mRNA-1:cds;Parent=Msa0840520-mRNA-1
chr5_4 three_prime_UTR 16257434 16257807 16257434 ID=Msa0840520-mRNA-1:three_prime_utr;Parent=Msa0840520-mRNA-1
Gene Sequence

>Msa0840520

ATGAAAGAGGTAACCGTTGAAGCTGAAGGTGGTGTCCTTGGCCATGGACATGGACACGGTCATGGTCATGGTCAAGGTGGTGTAGCAGCTTCAGAAGTTGCTAAAGGTAACAACAACAATACTACTAGACCTGACTTACACAACAGAGCTGTGAAAATTTTGAGAGCTAGAGAAGCTTATAATGGTTATGAAGAAGTTGGTGAAAAACCTTCTAGATTTGAAACTTTTGGTTGGTATCTTTATGAGTTTTGCTTCTACTTTGTTCAAACTGTACTTGTTCCTGTTGTCTTTCCTCTCATTATCAGTCAGCTTCAAAGTCCACCTACTGTTTCACTTCAAGAATGGAACAAAACTCATCCTGGCACTCACTGCTCTCAAAAGGAATTTCATTTGTATAACAAACTCACTGGACACACCATAATTTCAAAGTTTTCAGCATTGGAATGGACATCAATTGCTTGGGCTACAGGTCTAGCCATAGCTGCACCAATTCTTGGCTTCCTTTCCTTCCACCTCGACGGCAATTTCCCAAAACTCATCACAGTTGCAGCAACAGGTGTAGGAGTTTTCTTCTGTCTCCCGGCTGGATTCTTCAAAGTCACAGGCATCTTCATTCCCTACATCGCTGGCATCATAGCAGCCAGCACAGTCGCCAATGCAGCTCACACGCAGCATCTCGGCCTCATGATCCGCGCCTTCACCGGAACAACTCTCAAGAAAGCACAGTTTTTCATTAGACAAGGTGTTTCATCCCGCCTCTCACTTCATGCTACTGCTGCTGGTTGTTTTGGTGGTGCTTTGATTTCAGCTTTCACTTACCATATGATACACGAACTCGATGAAAATAAGAGCGATATTATGAGTCTTTGGGTTGTTTCGATTTTCAGTGGTTTAATTTGGCTTGTTGGGATCTTGCATTTAGCTACAGCTACAAGTAGAACCACTGATTCGATCTCATTTTCGTCGAGGCTACACCCTTTTTCCATCTTCAAATATCCTCATGCTATTGGAGGTCTTGCTAGTGTTTTCCTTGCATCATTCACAACAATGGCTATTTTCACGGGTGGTGTGATTTTCATTGTTGGACAGCTTTGCATTAGGCCATTGCATTTGCTTTTGTTCTGGTTAACCTATTTCCTTTTCCCACTCGTTTCATTGTCACTGCTACAACCTTTACTGCGCGTGGTTAAGATGAACTCGGTGAAGATGCAGATCGTTGGGTTCTTTTTCTCGCTTCTGTCTTCAGGGTTTGGATTCTATTACGGACACAGTCACTGGAAATGGGGACACTTGGTTCTTTTCGCTGCCATTCAGAGCACATCAACAGGGATTTTGCACGCTTTTGGAAGGGTTTTGGTGTTAGATTGTGCTCCATCGGGAAAAGAAGGTGCTTTCTCTATATGGTATGCTTGGATGAGAGCTGCAGGTTTGTGTGTCGGGTTCACAGTTGGTTCAGTTGGGCCAGGACGGATTAGGACTTCGTTCGGAGTTGCTTTTTGCACTGCTATTGCTGGAATTGTTGTGTTGCTATTTGGAAACATCAGTGATGCTGGTGGTGCTGTTGCTGCAGGGAATGTAAGTGACGATAATGAGAGAAGCTCTCCGGTGGTTTCTGGTTTAGATTCGAAAGAAGCTGCTCGAGTTTGA

Protein sequence

>Msa0840520

MKEVTVEAEGGVLGHGHGHGHGHGQGGVAASEVAKGNNNNTTRPDLHNRAVKILRAREAYNGYEEVGEKPSRFETFGWYLYEFCFYFVQTVLVPVVFPLIISQLQSPPTVSLQEWNKTHPGTHCSQKEFHLYNKLTGHTIISKFSALEWTSIAWATGLAIAAPILGFLSFHLDGNFPKLITVAATGVGVFFCLPAGFFKVTGIFIPYIAGIIAASTVANAAHTQHLGLMIRAFTGTTLKKAQFFIRQGVSSRLSLHATAAGCFGGALISAFTYHMIHELDENKSDIMSLWVVSIFSGLIWLVGILHLATATSRTTDSISFSSRLHPFSIFKYPHAIGGLASVFLASFTTMAIFTGGVIFIVGQLCIRPLHLLLFWLTYFLFPLVSLSLLQPLLRVVKMNSVKMQIVGFFFSLLSSGFGFYYGHSHWKWGHLVLFAAIQSTSTGILHAFGRVLVLDCAPSGKEGAFSIWYAWMRAAGLCVGFTVGSVGPGRIRTSFGVAFCTAIAGIVVLLFGNISDAGGAVAAGNVSDDNERSSPVVSGLDSKEAARV*