AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0377050

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0377050 MtrunA17_Chr3g0131931 96.714 426 14 0 1 426 1 426 0.0 864
Msa0377050 MtrunA17_Chr6g0462021 54.567 427 175 4 4 413 5 429 1.82e-166 474
Msa0377050 MtrunA17_Chr7g0251761 53.687 434 179 5 4 424 5 429 8.16e-152 437
Msa0377050 MtrunA17_Chr1g0201631 48.139 403 179 6 21 397 5 403 1.72e-133 390
Msa0377050 MtrunA17_Chr6g0464751 49.383 405 173 8 21 397 5 405 6.27e-130 381
Msa0377050 MtrunA17_Chr7g0255151 51.438 313 138 4 11 315 15 321 1.21e-107 325
Msa0377050 MtrunA17_Chr7g0255161 53.968 252 97 4 79 315 12 259 9.45e-90 276
Msa0377050 MtrunA17_Chr5g0406311 36.264 182 97 6 147 321 164 333 1.61e-21 95.1
Msa0377050 MtrunA17_Chr4g0064931 28.968 252 150 7 86 325 322 556 5.44e-21 95.5
Msa0377050 MtrunA17_Chr7g0273371 28.718 195 112 3 151 318 160 354 8.53e-20 90.9
Msa0377050 MtrunA17_Chr4g0011001 29.963 267 142 10 51 297 27 268 9.15e-20 89.4
Msa0377050 MtrunA17_Chr1g0211241 30.568 229 122 7 87 307 416 615 1.43e-19 91.3
Msa0377050 MtrunA17_Chr1g0199411 28.440 218 115 6 87 292 53 241 1.61e-18 85.1
Msa0377050 MtrunA17_Chr4g0009911 27.650 217 110 6 103 301 76 263 2.65e-17 82.0
Msa0377050 MtrunA17_Chr4g0049351 32.903 155 89 5 151 292 362 514 4.79e-17 83.2
Msa0377050 MtrunA17_Chr1g0211231 29.487 234 110 9 86 307 340 530 1.31e-16 82.0
Msa0377050 MtrunA17_Chr7g0276121 29.245 212 110 10 103 297 83 271 2.55e-14 73.6
Msa0377050 MtrunA17_Chr4g0042821 32.824 131 78 3 152 272 180 310 1.01e-12 70.1
Msa0377050 MtrunA17_Chr3g0144181 28.788 132 82 3 152 272 149 279 6.04e-11 64.3
Msa0377050 MtrunA17_Chr1g0193941 26.866 134 86 4 150 272 155 287 6.96e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0377050 AT3G48760.1 54.206 428 173 6 19 423 26 453 5.49e-163 468
Msa0377050 AT3G26935.1 53.623 414 168 5 4 397 5 414 9.11e-159 455
Msa0377050 AT5G41060.1 55.639 399 153 6 6 386 7 399 2.08e-154 443
Msa0377050 AT5G41060.2 56.684 374 141 5 31 386 14 384 3.02e-148 427
Msa0377050 AT4G24630.1 48.477 394 186 7 21 399 4 395 2.11e-131 384
Msa0377050 AT5G41060.3 56.418 335 125 5 70 386 1 332 1.93e-129 377
Msa0377050 AT5G41060.4 56.418 335 125 5 70 386 1 332 1.93e-129 377
Msa0377050 AT5G50020.3 56.711 298 127 2 21 316 4 301 3.18e-126 372
Msa0377050 AT5G50020.2 56.711 298 127 2 21 316 34 331 8.07e-126 372
Msa0377050 AT5G50020.1 54.698 298 126 3 21 316 4 294 3.19e-118 351
Msa0377050 AT3G56930.1 52.288 306 140 2 16 315 5 310 2.51e-111 336
Msa0377050 AT5G05070.1 52.805 303 129 5 20 315 36 331 1.98e-108 326
Msa0377050 AT2G40990.1 39.474 418 218 9 5 411 12 405 7.02e-96 294
Msa0377050 AT3G56920.1 43.824 340 172 4 21 357 10 333 1.45e-92 283
Msa0377050 AT3G56930.2 47.195 303 118 3 19 315 8 274 1.33e-89 279
Msa0377050 AT3G51390.2 31.048 248 123 6 86 300 73 305 1.65e-20 92.4
Msa0377050 AT3G51390.1 33.684 190 111 4 118 300 129 310 7.58e-20 90.5
Msa0377050 AT3G60800.1 28.358 268 147 8 51 297 27 270 7.99e-19 87.0
Msa0377050 AT3G04970.3 31.973 147 80 2 151 277 73 219 2.61e-18 85.5
Msa0377050 AT2G14255.1 31.818 154 92 4 151 292 363 515 6.51e-18 86.3
Msa0377050 AT4G22750.1 28.346 254 133 10 83 313 54 281 1.09e-17 83.6
Msa0377050 AT4G00840.1 30.634 284 141 14 37 297 5 255 1.09e-17 83.6
Msa0377050 AT5G04270.1 29.651 172 95 3 103 274 66 211 1.64e-17 82.8
Msa0377050 AT3G04970.1 31.973 147 80 2 151 277 160 306 2.16e-17 84.0
Msa0377050 AT3G09320.1 30.275 218 105 7 102 301 66 254 1.88e-16 79.7
Msa0377050 AT5G20350.1 25.581 258 164 8 84 330 315 555 9.75e-16 79.7
Msa0377050 AT4G00840.2 33.735 166 86 7 37 194 5 154 2.75e-15 75.1
Msa0377050 AT3G04970.2 31.690 142 77 2 151 272 160 301 5.73e-15 75.9
Msa0377050 AT1G69420.1 31.298 131 80 2 152 272 164 294 6.97e-14 73.9
Msa0377050 AT1G69420.2 31.298 131 80 2 152 272 164 294 6.97e-14 73.9
Msa0377050 AT4G01730.1 27.820 133 86 2 150 272 157 289 6.82e-12 67.8
Msa0377050 AT3G22180.1 31.061 132 79 5 152 272 173 303 9.70e-12 67.4

Find 111 sgRNAs with CRISPR-Local

Find 260 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATGATTCTGTTGGTTCTTT+TGG 0.104120 3_1:-77446691 None:intergenic
TCACTTCCATCATAATTATC+TGG 0.213227 3_1:-77445337 None:intergenic
TCAATTAGCCCTTTGTTATA+AGG 0.231915 3_1:-77446604 None:intergenic
CTTGGAGGGAGGTTTATATT+TGG 0.257102 3_1:+77443796 Msa0377050:CDS
CGGCTTGTGTTTCATTGTTT+TGG 0.260003 3_1:+77447126 Msa0377050:three_prime_UTR
GGGAACAAAGCAGCAGAAAA+TGG 0.266208 3_1:+77446902 Msa0377050:CDS
CGAAGGATCAACGGTATTTC+CGG 0.276497 3_1:-77443640 None:intergenic
GACAAGTTGCTTCCTTTCTA+AGG 0.282513 3_1:+77446869 Msa0377050:CDS
CAATTAGCCCTTTGTTATAA+GGG 0.322127 3_1:-77446603 None:intergenic
TTCATTGCTGTCTGGTTTGT+TGG 0.334463 3_1:+77446358 Msa0377050:CDS
ATTCTCAGAGCAACAGTATA+AGG 0.338816 3_1:-77447339 None:intergenic
TTGTTATGTTCGGATTTGAT+AGG 0.350269 3_1:+77447097 Msa0377050:three_prime_UTR
GATTATAAAGACGAGGAATA+TGG 0.354047 3_1:+77446778 Msa0377050:CDS
TCCATTGACAATTACTTCCT+TGG 0.361235 3_1:-77445404 None:intergenic
AAAGCACAGAAAACAGCAAC+AGG 0.373823 3_1:-77443865 None:intergenic
AGTGATACATCTGTGGATTT+AGG 0.375920 3_1:+77446817 Msa0377050:CDS
CTTTCTAAGGCAGTCCTTGT+GGG 0.391361 3_1:+77446882 Msa0377050:CDS
TGTTATAAGGGTTGACTTGT+CGG 0.392823 3_1:-77446591 None:intergenic
CATTGTAAACTGGCATCATA+AGG 0.394852 3_1:-77446735 None:intergenic
TGCTCTGAGAATATAATTGC+CGG 0.400359 3_1:+77447350 Msa0377050:three_prime_UTR
ATTGAATATCCAGAGTGATT+AGG 0.410341 3_1:-77443916 None:intergenic
AGCAAAAGGCATGAACATAA+AGG 0.422939 3_1:-77446240 None:intergenic
GGGGCAGAGTTTGTTATGTT+CGG 0.427660 3_1:+77447087 Msa0377050:three_prime_UTR
TCATCAGCCTCATTGTAAAC+TGG 0.432467 3_1:-77446745 None:intergenic
GTAAATATAGATTTCACATC+AGG 0.435683 3_1:-77443820 None:intergenic
ATTATTAGTGCAATGGAAGC+AGG 0.437732 3_1:-77446328 None:intergenic
AAAACAATGCCGACGTCAAA+TGG 0.448013 3_1:-77447375 None:intergenic
CCATGGGTTGGTCAGTGTAT+TGG 0.450019 3_1:+77445535 Msa0377050:CDS
TTGTGCTGATTAGATATGTA+TGG 0.451420 3_1:-77446396 None:intergenic
GGAACAAAGCAGCAGAAAAT+GGG 0.455188 3_1:+77446903 Msa0377050:CDS
CATGAACATAAAGGCAAAGC+AGG 0.455937 3_1:-77446231 None:intergenic
TATACACATTCATTGCTGTC+TGG 0.456264 3_1:+77446350 Msa0377050:CDS
ATTGCTGTCTGGTTTGTTGG+AGG 0.458351 3_1:+77446361 Msa0377050:CDS
GCTACTGAGTTCGCCGGCGC+CGG 0.464541 3_1:-77443618 None:intergenic
GCAGTATGCTTCACACAGAA+AGG 0.468722 3_1:+77446839 Msa0377050:CDS
AAACAAACATGTAGTAGAAC+CGG 0.470642 3_1:-77446198 None:intergenic
TACTGAGCAATGAGAGCAGC+GGG 0.473275 3_1:-77445476 None:intergenic
CTGACCTCAGGAAGAGATCC+TGG 0.475106 3_1:+77445283 Msa0377050:CDS
CACTTCCATCATAATTATCT+GGG 0.480034 3_1:-77445336 None:intergenic
CACGGCGACAGCGCAATTAC+CGG 0.481466 3_1:+77446179 Msa0377050:intron
CAGTATGCTTCACACAGAAA+GGG 0.481949 3_1:+77446840 Msa0377050:CDS
CTTTGTCTAGATGATTCTGT+TGG 0.483481 3_1:-77446700 None:intergenic
CCTTTCTAAGGCAGTCCTTG+TGG 0.491773 3_1:+77446881 Msa0377050:CDS
GGTTGACTTGTCGGTCATAC+CGG 0.492971 3_1:-77446582 None:intergenic
TCCAAGGAAGTAATTGTCAA+TGG 0.493913 3_1:+77445403 Msa0377050:CDS
CCACTCCCAGATAATTATGA+TGG 0.500454 3_1:+77445331 Msa0377050:CDS
GAATTGCGAGGCACTATGCC+AGG 0.501439 3_1:-77445301 None:intergenic
AGCACAGAAAACAGCAACAG+GGG 0.504125 3_1:-77443863 None:intergenic
AAGATGATGAATAGAAATTG+TGG 0.507076 3_1:+77447258 Msa0377050:three_prime_UTR
TGTTATGTTCGGATTTGATA+GGG 0.515498 3_1:+77447098 Msa0377050:three_prime_UTR
ACAAATGCATCCTCCGGCGC+CGG 0.518692 3_1:+77443605 Msa0377050:exon
ACTCAGAGGAGATATCGATC+TGG 0.527358 3_1:+77446287 Msa0377050:CDS
TTTGCTGGGTTTACATCATG+AGG 0.527634 3_1:+77446257 Msa0377050:CDS
AAGCGGATCACCAGTGATAG+TGG 0.528062 3_1:+77446973 Msa0377050:CDS
ATTTCCTTTCCAAGCGCGAT+AGG 0.533436 3_1:-77443673 None:intergenic
CATGATGTAAACCCAGCAAA+AGG 0.534339 3_1:-77446254 None:intergenic
CCACAAGGACTGCCTTAGAA+AGG 0.535328 3_1:-77446881 None:intergenic
TTATTAGTGCAATGGAAGCA+GGG 0.535975 3_1:-77446327 None:intergenic
GATTTGATCATCACTGCCCA+TGG 0.538217 3_1:+77445518 Msa0377050:CDS
TCATCAGAACCTATCGCGCT+TGG 0.540838 3_1:+77443664 Msa0377050:CDS
AAGTCAACCCTTATAACAAA+GGG 0.541030 3_1:+77446596 Msa0377050:CDS
ATTGTAAACTGGCATCATAA+GGG 0.543614 3_1:-77446734 None:intergenic
AAGCACAGAAAACAGCAACA+GGG 0.545403 3_1:-77443864 None:intergenic
TCAAACACAAATGCATCCTC+CGG 0.547234 3_1:+77443599 Msa0377050:exon
TTTCCGGCTACTGAGTTCGC+CGG 0.553399 3_1:-77443624 None:intergenic
AGAACCTATCGCGCTTGGAA+AGG 0.560307 3_1:+77443669 Msa0377050:CDS
GATCATCACTGCCCATGGGT+TGG 0.560369 3_1:+77445523 Msa0377050:CDS
ACTGAGTTCGCCGGCGCCGG+AGG 0.561048 3_1:-77443615 None:intergenic
ATTGCTCTTATACTGACCTC+AGG 0.563603 3_1:+77445271 Msa0377050:CDS
CCATCATAATTATCTGGGAG+TGG 0.563784 3_1:-77445331 None:intergenic
AGGTTCATTACCACTATCAC+TGG 0.565407 3_1:-77446983 None:intergenic
ACCACATTTACCACGATCCA+AGG 0.572679 3_1:+77445387 Msa0377050:CDS
TCGGATTTGATAGGGAAGTA+CGG 0.574055 3_1:+77447106 Msa0377050:three_prime_UTR
ATGCCGACGTCAAATGGTGC+CGG 0.574249 3_1:-77447369 None:intergenic
ACAATTACTTCCTTGGATCG+TGG 0.582722 3_1:-77445397 None:intergenic
TCTGCTGCTTTGTTCCCACA+AGG 0.583203 3_1:-77446896 None:intergenic
CCAATACACTGACCAACCCA+TGG 0.583973 3_1:-77445535 None:intergenic
GCGCCGGCGAACTCAGTAGC+CGG 0.585327 3_1:+77443621 Msa0377050:CDS
TGTGTATATTATTAGTGCAA+TGG 0.589926 3_1:-77446335 None:intergenic
TTACAATGAGGCTGATGAGG+TGG 0.589928 3_1:+77446750 Msa0377050:CDS
ACAGAATCATCTAGACAAAG+AGG 0.591209 3_1:+77446703 Msa0377050:CDS
CAAGTCAACCCTTATAACAA+AGG 0.591481 3_1:+77446595 Msa0377050:CDS
GATCGTGGTAAATGTGGTGG+TGG 0.591714 3_1:-77445382 None:intergenic
ATTTGATCATCACTGCCCAT+GGG 0.600506 3_1:+77445519 Msa0377050:CDS
TCTGATGAGCGAAGGATCAA+CGG 0.601917 3_1:-77443649 None:intergenic
AGTATGCTTCACACAGAAAG+GGG 0.616574 3_1:+77446841 Msa0377050:CDS
AAGTAAATGAACATAATGGA+AGG 0.617930 3_1:-77447289 None:intergenic
TATTAGTGCAATGGAAGCAG+GGG 0.618463 3_1:-77446326 None:intergenic
CGATAGGTTCTGATGAGCGA+AGG 0.621597 3_1:-77443657 None:intergenic
TCCTTGGATCGTGGTAAATG+TGG 0.622600 3_1:-77445388 None:intergenic
GGTTGGTCAGTGTATTGGAC+TGG 0.624376 3_1:+77445540 Msa0377050:CDS
TGATTTAAGTGATACATCTG+TGG 0.629494 3_1:+77446810 Msa0377050:CDS
TCATAATTATCTGGGAGTGG+AGG 0.634751 3_1:-77445328 None:intergenic
AGTTTACAATGAGGCTGATG+AGG 0.639849 3_1:+77446747 Msa0377050:CDS
TATGATGCCAGTTTACAATG+AGG 0.640744 3_1:+77446738 Msa0377050:CDS
ATATCTAATCAGCACAAACC+AGG 0.643061 3_1:+77446402 Msa0377050:CDS
AGCTTCTGATGTTCTTGACG+AGG 0.657463 3_1:+77446930 Msa0377050:CDS
ATGAACATAAAGGCAAAGCA+GGG 0.663108 3_1:-77446230 None:intergenic
TTGGATCGTGGTAAATGTGG+TGG 0.667113 3_1:-77445385 None:intergenic
CAATACACTGACCAACCCAT+GGG 0.670201 3_1:-77445534 None:intergenic
ATACTGAGCAATGAGAGCAG+CGG 0.679203 3_1:-77445477 None:intergenic
AGTGATAGTGGTAATGAACC+TGG 0.679603 3_1:+77446985 Msa0377050:CDS
TATGCCAGGATCTCTTCCTG+AGG 0.701986 3_1:-77445287 None:intergenic
AGTGGAGGATAAGAATTGCG+AGG 0.702045 3_1:-77445313 None:intergenic
CATGAGGATCAAGAACTCAG+AGG 0.703307 3_1:+77446273 Msa0377050:CDS
TTGCCGGCACCATTTGACGT+CGG 0.703566 3_1:+77447366 Msa0377050:three_prime_UTR
GAGCAATGAGAGCAGCGGGG+AGG 0.704186 3_1:-77445472 None:intergenic
CTCAGTATGTGATAACTGTG+TGG 0.713980 3_1:+77445492 Msa0377050:CDS
ACGAAGACGACGAATCAAAG+CGG 0.721141 3_1:+77446956 Msa0377050:CDS
ACTGAGCAATGAGAGCAGCG+GGG 0.779041 3_1:-77445475 None:intergenic
GATAGTGGTAATGAACCTGG+TGG 0.817967 3_1:+77446988 Msa0377050:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTAATCCTTATATAATTA+AGG - chr3_1:77443712-77443731 None:intergenic 10.0%
!! TTAAAATTACAAAGAAAAAT+AGG + chr3_1:77447061-77447080 Msa0377050:three_prime_UTR 10.0%
!! AGTTAAACCTTAATTATATA+AGG + chr3_1:77443702-77443721 Msa0377050:intron 15.0%
!!! TTGTATAAAATTTTTGAAGT+AGG - chr3_1:77444241-77444260 None:intergenic 15.0%
!!! CTTCAAAAATTTTATACAAT+CGG + chr3_1:77444242-77444261 Msa0377050:intron 15.0%
!!! TTTGTAATGAAATATTTTCT+TGG + chr3_1:77445007-77445026 Msa0377050:intron 15.0%
!! ATATTATTCCATTTCTAATT+AGG - chr3_1:77445963-77445982 None:intergenic 15.0%
!!! TTTTTTTTTTAGTTATTCTG+TGG + chr3_1:77447193-77447212 Msa0377050:three_prime_UTR 15.0%
!! AAAAAAGTAAATGAACATAA+TGG - chr3_1:77447296-77447315 None:intergenic 15.0%
!! TGAATAAAAATGACTTACAA+AGG - chr3_1:77443968-77443987 None:intergenic 20.0%
!! AAACTTCTTCTATTCTAAAT+AGG - chr3_1:77444322-77444341 None:intergenic 20.0%
!!! TGTATAGCTAGATATTATTT+TGG + chr3_1:77444375-77444394 Msa0377050:intron 20.0%
!! CTAGATATAAATAAGATTTC+TGG + chr3_1:77444413-77444432 Msa0377050:intron 20.0%
!! AAACTATAAGAGAAACTATT+TGG + chr3_1:77444724-77444743 Msa0377050:intron 20.0%
!! AGATTTAGATATTAATGAGT+TGG + chr3_1:77444749-77444768 Msa0377050:intron 20.0%
!!! TTTTTTTTACCTGATTACTA+TGG - chr3_1:77444926-77444945 None:intergenic 20.0%
!! ATTAAAATGATAGCACAAAT+TGG - chr3_1:77445606-77445625 None:intergenic 20.0%
!!! CATATGAAAATTTTAGATAC+CGG + chr3_1:77446563-77446582 Msa0377050:CDS 20.0%
!!! GAATTTTTCTGAAATTATAG+AGG - chr3_1:77447030-77447049 None:intergenic 20.0%
!! AAATTACAAAGAAAAATAGG+TGG + chr3_1:77447064-77447083 Msa0377050:three_prime_UTR 20.0%
!! AATTACAAAGAAAAATAGGT+GGG + chr3_1:77447065-77447084 Msa0377050:three_prime_UTR 20.0%
!!! TGATATAGTTCTTTTAAAAG+TGG + chr3_1:77447216-77447235 Msa0377050:three_prime_UTR 20.0%
!! ACAAAAACAAAAGAAATGAA+GGG - chr3_1:77447319-77447338 None:intergenic 20.0%
!!! AATGCTACTTTTTCTTTTTC+AGG + chr3_1:77443765-77443784 Msa0377050:intron 25.0%
! GTAAATATAGATTTCACATC+AGG - chr3_1:77443823-77443842 None:intergenic 25.0%
! TTCATAACTTGAATCCATTA+GGG + chr3_1:77444136-77444155 Msa0377050:intron 25.0%
! ATGAGTTAAGAATAACTAAC+AGG - chr3_1:77444198-77444217 None:intergenic 25.0%
! TAGTTATTCTTAACTCATCA+TGG + chr3_1:77444200-77444219 Msa0377050:intron 25.0%
! AGTTATTCTTAACTCATCAT+GGG + chr3_1:77444201-77444220 Msa0377050:intron 25.0%
! AATAGAAGAAGTTTAGCATT+TGG + chr3_1:77444328-77444347 Msa0377050:intron 25.0%
! TTAGCATTTGGACAAATTTA+TGG + chr3_1:77444340-77444359 Msa0377050:intron 25.0%
! TATATCTAGCTAAGTATACT+TGG - chr3_1:77444402-77444421 None:intergenic 25.0%
!! CACTATCTTTTCTACTATAT+AGG - chr3_1:77444589-77444608 None:intergenic 25.0%
! CTATATAGTAGAAAAGATAG+TGG + chr3_1:77444587-77444606 Msa0377050:intron 25.0%
!!! TAGAAAAGATAGTGGAAAAT+AGG + chr3_1:77444595-77444614 Msa0377050:intron 25.0%
!! GTTTCTCTTATAGTTTTCAT+AGG - chr3_1:77444720-77444739 None:intergenic 25.0%
!! TATTGTTGTTGTAAACTCTA+TGG + chr3_1:77444831-77444850 Msa0377050:intron 25.0%
!! TGAAATATTTTCTTGGTGAA+TGG + chr3_1:77445014-77445033 Msa0377050:intron 25.0%
! ATTTACCTCCTAATTAGAAA+TGG + chr3_1:77445952-77445971 Msa0377050:intron 25.0%
! TTATTCCATTTCTAATTAGG+AGG - chr3_1:77445960-77445979 None:intergenic 25.0%
!! TTGTTTCTTTGCATGTATAT+TGG + chr3_1:77446001-77446020 Msa0377050:intron 25.0%
! TGTGTATATTATTAGTGCAA+TGG - chr3_1:77446338-77446357 None:intergenic 25.0%
! ATAGTAAGTAGTCTCATTTA+AGG - chr3_1:77446459-77446478 None:intergenic 25.0%
! ACAAAAGGAACAATCATTAA+CGG - chr3_1:77446528-77446547 None:intergenic 25.0%
!!! CTGAAATTGTTTTTGGATAT+GGG - chr3_1:77446661-77446680 None:intergenic 25.0%
! ATTACAAAGAAAAATAGGTG+GGG + chr3_1:77447066-77447085 Msa0377050:three_prime_UTR 25.0%
!!! TCATTGTTTTGGTCAAAAAA+TGG + chr3_1:77447137-77447156 Msa0377050:three_prime_UTR 25.0%
! AAGATGATGAATAGAAATTG+TGG + chr3_1:77447258-77447277 Msa0377050:three_prime_UTR 25.0%
!! AAGTAAATGAACATAATGGA+AGG - chr3_1:77447292-77447311 None:intergenic 25.0%
! GACAAAAACAAAAGAAATGA+AGG - chr3_1:77447320-77447339 None:intergenic 25.0%
!!! CTTTTTCAGGTGTTTTTTCT+TGG + chr3_1:77443778-77443797 Msa0377050:intron 30.0%
ATTGAATATCCAGAGTGATT+AGG - chr3_1:77443919-77443938 None:intergenic 30.0%
TATTATTGTTGTCGATGTGT+CGG + chr3_1:77444093-77444112 Msa0377050:intron 30.0%
CTTCATAACTTGAATCCATT+AGG + chr3_1:77444135-77444154 Msa0377050:intron 30.0%
! ATACAATCGGTTAGTTGAAA+AGG + chr3_1:77444255-77444274 Msa0377050:intron 30.0%
TGATAACTGATAAGACTAGA+CGG + chr3_1:77444503-77444522 Msa0377050:intron 30.0%
AGTTAGATTACAAGAGATAG+AGG + chr3_1:77444690-77444709 Msa0377050:intron 30.0%
! TAATGAGTTGGATCCAAATA+TGG + chr3_1:77444761-77444780 Msa0377050:intron 30.0%
TACGCATCATAAACCATATT+TGG - chr3_1:77444777-77444796 None:intergenic 30.0%
! TAGCTATATCCAACTTTTAG+AGG + chr3_1:77445073-77445092 Msa0377050:intron 30.0%
! AGCTATATCCAACTTTTAGA+GGG + chr3_1:77445074-77445093 Msa0377050:intron 30.0%
! CATAATTACCCTCTAAAAGT+TGG - chr3_1:77445085-77445104 None:intergenic 30.0%
! TAACGTGTTTAGGATTAAAG+TGG - chr3_1:77445232-77445251 None:intergenic 30.0%
CACTTCCATCATAATTATCT+GGG - chr3_1:77445339-77445358 None:intergenic 30.0%
TCACTTCCATCATAATTATC+TGG - chr3_1:77445340-77445359 None:intergenic 30.0%
! TCCTGAACAAACAATTTTAG+TGG + chr3_1:77445690-77445709 Msa0377050:intron 30.0%
TCCACTAAAATTGTTTGTTC+AGG - chr3_1:77445694-77445713 None:intergenic 30.0%
ATTGACAGCTTAGTCAATAA+GGG - chr3_1:77445911-77445930 None:intergenic 30.0%
AATTGACAGCTTAGTCAATA+AGG - chr3_1:77445912-77445931 None:intergenic 30.0%
GTCAATTTACTGTGATCAAA+TGG + chr3_1:77445925-77445944 Msa0377050:intron 30.0%
CTCTTTGCTTTATATGTACA+CGG + chr3_1:77446161-77446180 Msa0377050:intron 30.0%
AAACAAACATGTAGTAGAAC+CGG - chr3_1:77446201-77446220 None:intergenic 30.0%
!! TTGTGCTGATTAGATATGTA+TGG - chr3_1:77446399-77446418 None:intergenic 30.0%
GTAAGAAAAACGAACTAGAA+AGG - chr3_1:77446503-77446522 None:intergenic 30.0%
AAGTCAACCCTTATAACAAA+GGG + chr3_1:77446596-77446615 Msa0377050:CDS 30.0%
! CAATTAGCCCTTTGTTATAA+GGG - chr3_1:77446606-77446625 None:intergenic 30.0%
! TCAATTAGCCCTTTGTTATA+AGG - chr3_1:77446607-77446626 None:intergenic 30.0%
!!! ATTGTTTTTGGATATGGGAA+TGG - chr3_1:77446656-77446675 None:intergenic 30.0%
!!! CCTGAAATTGTTTTTGGATA+TGG - chr3_1:77446662-77446681 None:intergenic 30.0%
CCATATCCAAAAACAATTTC+AGG + chr3_1:77446659-77446678 Msa0377050:CDS 30.0%
ATTGTAAACTGGCATCATAA+GGG - chr3_1:77446737-77446756 None:intergenic 30.0%
GGAAAAAGATTATAAAGACG+AGG + chr3_1:77446771-77446790 Msa0377050:CDS 30.0%
GATTATAAAGACGAGGAATA+TGG + chr3_1:77446778-77446797 Msa0377050:CDS 30.0%
TGATTTAAGTGATACATCTG+TGG + chr3_1:77446810-77446829 Msa0377050:CDS 30.0%
TTACAAAGAAAAATAGGTGG+GGG + chr3_1:77447067-77447086 Msa0377050:three_prime_UTR 30.0%
TTGTTATGTTCGGATTTGAT+AGG + chr3_1:77447097-77447116 Msa0377050:three_prime_UTR 30.0%
TGTTATGTTCGGATTTGATA+GGG + chr3_1:77447098-77447117 Msa0377050:three_prime_UTR 30.0%
! TTTTGGTCAAAAAATGGCAT+TGG + chr3_1:77447143-77447162 Msa0377050:three_prime_UTR 30.0%
!!! TTTCAGGTGTTTTTTCTTGG+AGG + chr3_1:77443781-77443800 Msa0377050:intron 35.0%
!!! TTCAGGTGTTTTTTCTTGGA+GGG + chr3_1:77443782-77443801 Msa0377050:intron 35.0%
! GATGATTTTCCTAATCACTC+TGG + chr3_1:77443907-77443926 Msa0377050:CDS 35.0%
ATAATTCAATGTGTCAGCGT+CGG - chr3_1:77444057-77444076 None:intergenic 35.0%
! TGGATTCAAGTTATGAAGCA+CGG - chr3_1:77444133-77444152 None:intergenic 35.0%
! TACTTAAAGCACTACCCTAA+TGG - chr3_1:77444153-77444172 None:intergenic 35.0%
! ATTAGGGTAGTGCTTTAAGT+AGG + chr3_1:77444152-77444171 Msa0377050:intron 35.0%
GTTAAGAATAACTAACAGGC+AGG - chr3_1:77444194-77444213 None:intergenic 35.0%
! AGATTTCTGGATATTGCTTG+TGG + chr3_1:77444426-77444445 Msa0377050:intron 35.0%
GATAACTGATAAGACTAGAC+GGG + chr3_1:77444504-77444523 Msa0377050:intron 35.0%
!! AGATAGTGGAAAATAGGCTT+AGG + chr3_1:77444601-77444620 Msa0377050:intron 35.0%
AAAATAGGCTTAGGTGGTTT+GGG + chr3_1:77444610-77444629 Msa0377050:intron 35.0%
AGTAAGAAGAGTAGATCAGA+TGG + chr3_1:77444662-77444681 Msa0377050:intron 35.0%
GGACTACTTGTGTTAAGAAA+TGG + chr3_1:77444852-77444871 Msa0377050:intron 35.0%
TTGTGTTAAGAAATGGAGCT+AGG + chr3_1:77444859-77444878 Msa0377050:intron 35.0%
TGTGTTAAGAAATGGAGCTA+GGG + chr3_1:77444860-77444879 Msa0377050:intron 35.0%
AAAATGAAGCGAAATGTGTC+AGG + chr3_1:77444894-77444913 Msa0377050:intron 35.0%
!! AGGTTTTGACCATAGTAATC+AGG + chr3_1:77444914-77444933 Msa0377050:intron 35.0%
AGTTGAGATAACTTCTTGCA+TGG - chr3_1:77444974-77444993 None:intergenic 35.0%
GCAATACATGTAACGTGTTT+AGG - chr3_1:77445242-77445261 None:intergenic 35.0%
TCCAAGGAAGTAATTGTCAA+TGG + chr3_1:77445403-77445422 Msa0377050:CDS 35.0%
TCCATTGACAATTACTTCCT+TGG - chr3_1:77445407-77445426 None:intergenic 35.0%
AACATTGACCAAGTTGTCAA+AGG + chr3_1:77445713-77445732 Msa0377050:intron 35.0%
ACATTGACCAAGTTGTCAAA+GGG + chr3_1:77445714-77445733 Msa0377050:intron 35.0%
GTTGTTGTCATGTGATTGAA+AGG + chr3_1:77445758-77445777 Msa0377050:intron 35.0%
!!! CTTACCCTGTTTTTTTACAC+AGG - chr3_1:77445812-77445831 None:intergenic 35.0%
CGTGTACATATAAAGCAAAG+AGG - chr3_1:77446163-77446182 None:intergenic 35.0%
ATGAACATAAAGGCAAAGCA+GGG - chr3_1:77446233-77446252 None:intergenic 35.0%
! AGCAAAAGGCATGAACATAA+AGG - chr3_1:77446243-77446262 None:intergenic 35.0%
! TTTATGTTCATGCCTTTTGC+TGG + chr3_1:77446242-77446261 Msa0377050:CDS 35.0%
! TTATGTTCATGCCTTTTGCT+GGG + chr3_1:77446243-77446262 Msa0377050:CDS 35.0%
TTATTAGTGCAATGGAAGCA+GGG - chr3_1:77446330-77446349 None:intergenic 35.0%
ATTATTAGTGCAATGGAAGC+AGG - chr3_1:77446331-77446350 None:intergenic 35.0%
TATACACATTCATTGCTGTC+TGG + chr3_1:77446350-77446369 Msa0377050:CDS 35.0%
ATATCTAATCAGCACAAACC+AGG + chr3_1:77446402-77446421 Msa0377050:CDS 35.0%
AGTTAAGTAGTGTTCAAACC+TGG - chr3_1:77446423-77446442 None:intergenic 35.0%
! GTAGTCTCATTTAAGGTCAA+GGG - chr3_1:77446452-77446471 None:intergenic 35.0%
! AGTAGTCTCATTTAAGGTCA+AGG - chr3_1:77446453-77446472 None:intergenic 35.0%
TAGACTGCACATAGAACAAA+AGG - chr3_1:77446543-77446562 None:intergenic 35.0%
!! TGTTATAAGGGTTGACTTGT+CGG - chr3_1:77446594-77446613 None:intergenic 35.0%
CAAGTCAACCCTTATAACAA+AGG + chr3_1:77446595-77446614 Msa0377050:CDS 35.0%
! CTTGGACCTGAAATTGTTTT+TGG - chr3_1:77446668-77446687 None:intergenic 35.0%
! CAAAAACAATTTCAGGTCCA+AGG + chr3_1:77446666-77446685 Msa0377050:CDS 35.0%
!!! GATGATTCTGTTGGTTCTTT+TGG - chr3_1:77446694-77446713 None:intergenic 35.0%
CTTTGTCTAGATGATTCTGT+TGG - chr3_1:77446703-77446722 None:intergenic 35.0%
ACAGAATCATCTAGACAAAG+AGG + chr3_1:77446703-77446722 Msa0377050:CDS 35.0%
CATTGTAAACTGGCATCATA+AGG - chr3_1:77446738-77446757 None:intergenic 35.0%
TATGATGCCAGTTTACAATG+AGG + chr3_1:77446738-77446757 Msa0377050:CDS 35.0%
AGTGATACATCTGTGGATTT+AGG + chr3_1:77446817-77446836 Msa0377050:CDS 35.0%
TACAAAGAAAAATAGGTGGG+GGG + chr3_1:77447068-77447087 Msa0377050:three_prime_UTR 35.0%
ATTCTCAGAGCAACAGTATA+AGG - chr3_1:77447342-77447361 None:intergenic 35.0%
!! TGCTCTGAGAATATAATTGC+CGG + chr3_1:77447350-77447369 Msa0377050:three_prime_UTR 35.0%
TCAAACACAAATGCATCCTC+CGG + chr3_1:77443599-77443618 Msa0377050:exon 40.0%
CTTGGAGGGAGGTTTATATT+TGG + chr3_1:77443796-77443815 Msa0377050:CDS 40.0%
AAGCACAGAAAACAGCAACA+GGG - chr3_1:77443867-77443886 None:intergenic 40.0%
AAAGCACAGAAAACAGCAAC+AGG - chr3_1:77443868-77443887 None:intergenic 40.0%
ATAACTAACAGGCAGGTCAT+AGG - chr3_1:77444187-77444206 None:intergenic 40.0%
! GGTTAGTTGAAAAGGACTTG+AGG + chr3_1:77444263-77444282 Msa0377050:intron 40.0%
TAGTGGAAAATAGGCTTAGG+TGG + chr3_1:77444604-77444623 Msa0377050:intron 40.0%
GAAAATAGGCTTAGGTGGTT+TGG + chr3_1:77444609-77444628 Msa0377050:intron 40.0%
AAGAAGAGTAGATCAGATGG+AGG + chr3_1:77444665-77444684 Msa0377050:intron 40.0%
CGTAATTTGATCCATGTAGC+CGG + chr3_1:77444793-77444812 Msa0377050:intron 40.0%
ACAACAATATCCCACCAAGT+GGG - chr3_1:77444820-77444839 None:intergenic 40.0%
AACAACAATATCCCACCAAG+TGG - chr3_1:77444821-77444840 None:intergenic 40.0%
AACACGTTACATGTATTGCC+AGG + chr3_1:77445243-77445262 Msa0377050:intron 40.0%
GTATAAGAGCAATCAGAACC+TGG - chr3_1:77445264-77445283 None:intergenic 40.0%
ATTGCTCTTATACTGACCTC+AGG + chr3_1:77445271-77445290 Msa0377050:CDS 40.0%
TCATAATTATCTGGGAGTGG+AGG - chr3_1:77445331-77445350 None:intergenic 40.0%
CCATCATAATTATCTGGGAG+TGG - chr3_1:77445334-77445353 None:intergenic 40.0%
CCACTCCCAGATAATTATGA+TGG + chr3_1:77445331-77445350 Msa0377050:CDS 40.0%
ACAATTACTTCCTTGGATCG+TGG - chr3_1:77445400-77445419 None:intergenic 40.0%
CTCAGTATGTGATAACTGTG+TGG + chr3_1:77445492-77445511 Msa0377050:CDS 40.0%
ATTTGATCATCACTGCCCAT+GGG + chr3_1:77445519-77445538 Msa0377050:CDS 40.0%
CATTGACCAAGTTGTCAAAG+GGG + chr3_1:77445715-77445734 Msa0377050:intron 40.0%
AGCCTCCTGTGTAAAAAAAC+AGG + chr3_1:77445804-77445823 Msa0377050:intron 40.0%
GCCTCCTGTGTAAAAAAACA+GGG + chr3_1:77445805-77445824 Msa0377050:intron 40.0%
!!! ACCCTGTTTTTTTACACAGG+AGG - chr3_1:77445809-77445828 None:intergenic 40.0%
CTGCGTACAATACACCAAAA+TGG + chr3_1:77445833-77445852 Msa0377050:intron 40.0%
TTCCCAAACATCACACTCAT+TGG + chr3_1:77446038-77446057 Msa0377050:intron 40.0%
GACCAATGAGTGTGATGTTT+GGG - chr3_1:77446043-77446062 None:intergenic 40.0%
TGACCAATGAGTGTGATGTT+TGG - chr3_1:77446044-77446063 None:intergenic 40.0%
CATGAACATAAAGGCAAAGC+AGG - chr3_1:77446234-77446253 None:intergenic 40.0%
CATGATGTAAACCCAGCAAA+AGG - chr3_1:77446257-77446276 None:intergenic 40.0%
TTTGCTGGGTTTACATCATG+AGG + chr3_1:77446257-77446276 Msa0377050:CDS 40.0%
TATTAGTGCAATGGAAGCAG+GGG - chr3_1:77446329-77446348 None:intergenic 40.0%
! TTCATTGCTGTCTGGTTTGT+TGG + chr3_1:77446358-77446377 Msa0377050:CDS 40.0%
!!! TGTTGGTTCTTTTGGAACCT+TGG - chr3_1:77446686-77446705 None:intergenic 40.0%
TCATCAGCCTCATTGTAAAC+TGG - chr3_1:77446748-77446767 None:intergenic 40.0%
AGTTTACAATGAGGCTGATG+AGG + chr3_1:77446747-77446766 Msa0377050:CDS 40.0%
CAGTATGCTTCACACAGAAA+GGG + chr3_1:77446840-77446859 Msa0377050:CDS 40.0%
AGTATGCTTCACACAGAAAG+GGG + chr3_1:77446841-77446860 Msa0377050:CDS 40.0%
GACAAGTTGCTTCCTTTCTA+AGG + chr3_1:77446869-77446888 Msa0377050:CDS 40.0%
GGAACAAAGCAGCAGAAAAT+GGG + chr3_1:77446903-77446922 Msa0377050:CDS 40.0%
AGGTTCATTACCACTATCAC+TGG - chr3_1:77446986-77447005 None:intergenic 40.0%
!! AGTGATAGTGGTAATGAACC+TGG + chr3_1:77446985-77447004 Msa0377050:CDS 40.0%
TCGGATTTGATAGGGAAGTA+CGG + chr3_1:77447106-77447125 Msa0377050:three_prime_UTR 40.0%
! CGGCTTGTGTTTCATTGTTT+TGG + chr3_1:77447126-77447145 Msa0377050:three_prime_UTR 40.0%
CGAAGGATCAACGGTATTTC+CGG - chr3_1:77443643-77443662 None:intergenic 45.0%
TCTGATGAGCGAAGGATCAA+CGG - chr3_1:77443652-77443671 None:intergenic 45.0%
ATTTCCTTTCCAAGCGCGAT+AGG - chr3_1:77443676-77443695 None:intergenic 45.0%
!!! AGGTGTTTTTTCTTGGAGGG+AGG + chr3_1:77443785-77443804 Msa0377050:intron 45.0%
AGCACAGAAAACAGCAACAG+GGG - chr3_1:77443866-77443885 None:intergenic 45.0%
AGAGTTGAGAGAGAGAGAGT+TGG + chr3_1:77444556-77444575 Msa0377050:intron 45.0%
CAACAATATCCCACCAAGTG+GGG - chr3_1:77444819-77444838 None:intergenic 45.0%
GTTAAGAAATGGAGCTAGGG+AGG + chr3_1:77444863-77444882 Msa0377050:intron 45.0%
AGTGGAGGATAAGAATTGCG+AGG - chr3_1:77445316-77445335 None:intergenic 45.0%
TTGGATCGTGGTAAATGTGG+TGG - chr3_1:77445388-77445407 None:intergenic 45.0%
ACCACATTTACCACGATCCA+AGG + chr3_1:77445387-77445406 Msa0377050:CDS 45.0%
TCCTTGGATCGTGGTAAATG+TGG - chr3_1:77445391-77445410 None:intergenic 45.0%
ATACTGAGCAATGAGAGCAG+CGG - chr3_1:77445480-77445499 None:intergenic 45.0%
GATTTGATCATCACTGCCCA+TGG + chr3_1:77445518-77445537 Msa0377050:CDS 45.0%
CAATACACTGACCAACCCAT+GGG - chr3_1:77445537-77445556 None:intergenic 45.0%
AAGACTCCCCTTTGACAACT+TGG - chr3_1:77445724-77445743 None:intergenic 45.0%
AAGTTGTCAAAGGGGAGTCT+TGG + chr3_1:77445723-77445742 Msa0377050:intron 45.0%
AAGGTCACAGATTCTAGTCC+TGG + chr3_1:77445777-77445796 Msa0377050:intron 45.0%
AAAATGGTTGAACCTCGTCC+CGG + chr3_1:77445849-77445868 Msa0377050:intron 45.0%
CTTAGTCAATAAGGGAAGCC+CGG - chr3_1:77445903-77445922 None:intergenic 45.0%
CATGAGGATCAAGAACTCAG+AGG + chr3_1:77446273-77446292 Msa0377050:CDS 45.0%
ACTCAGAGGAGATATCGATC+TGG + chr3_1:77446287-77446306 Msa0377050:CDS 45.0%
!! ATTGCTGTCTGGTTTGTTGG+AGG + chr3_1:77446361-77446380 Msa0377050:CDS 45.0%
TTACAATGAGGCTGATGAGG+TGG + chr3_1:77446750-77446769 Msa0377050:CDS 45.0%
GCAGTATGCTTCACACAGAA+AGG + chr3_1:77446839-77446858 Msa0377050:CDS 45.0%
!! CTTTCTAAGGCAGTCCTTGT+GGG + chr3_1:77446882-77446901 Msa0377050:CDS 45.0%
GGGAACAAAGCAGCAGAAAA+TGG + chr3_1:77446902-77446921 Msa0377050:CDS 45.0%
AGCTTCTGATGTTCTTGACG+AGG + chr3_1:77446930-77446949 Msa0377050:CDS 45.0%
ACGAAGACGACGAATCAAAG+CGG + chr3_1:77446956-77446975 Msa0377050:CDS 45.0%
! GATAGTGGTAATGAACCTGG+TGG + chr3_1:77446988-77447007 Msa0377050:CDS 45.0%
!! GTTTTTGTTGAGTTGCCACC+AGG - chr3_1:77447006-77447025 None:intergenic 45.0%
!! GGGGCAGAGTTTGTTATGTT+CGG + chr3_1:77447087-77447106 Msa0377050:three_prime_UTR 45.0%
!! AATATAATAAAAAATAGTAA+TGG + chr3_1:77445978-77445997 Msa0377050:intron 5.0%
! CGATAGGTTCTGATGAGCGA+AGG - chr3_1:77443660-77443679 None:intergenic 50.0%
TCATCAGAACCTATCGCGCT+TGG + chr3_1:77443664-77443683 Msa0377050:CDS 50.0%
AGAACCTATCGCGCTTGGAA+AGG + chr3_1:77443669-77443688 Msa0377050:CDS 50.0%
TATGCCAGGATCTCTTCCTG+AGG - chr3_1:77445290-77445309 None:intergenic 50.0%
GATCGTGGTAAATGTGGTGG+TGG - chr3_1:77445385-77445404 None:intergenic 50.0%
TACTGAGCAATGAGAGCAGC+GGG - chr3_1:77445479-77445498 None:intergenic 50.0%
CCAATACACTGACCAACCCA+TGG - chr3_1:77445538-77445557 None:intergenic 50.0%
!! CCATGGGTTGGTCAGTGTAT+TGG + chr3_1:77445535-77445554 Msa0377050:CDS 50.0%
! GGTTGGTCAGTGTATTGGAC+TGG + chr3_1:77445540-77445559 Msa0377050:CDS 50.0%
! TTACACAGGAGGCTGTTTCC+AGG - chr3_1:77445798-77445817 None:intergenic 50.0%
! GGGACGAGGTTCAACCATTT+TGG - chr3_1:77445850-77445869 None:intergenic 50.0%
CTAAAGCTCCTGCATACGCA+GGG - chr3_1:77445876-77445895 None:intergenic 50.0%
ACTAAAGCTCCTGCATACGC+AGG - chr3_1:77445877-77445896 None:intergenic 50.0%
! ATGCAGGAGCTTTAGTGCAC+CGG + chr3_1:77445881-77445900 Msa0377050:intron 50.0%
!! GGTTGACTTGTCGGTCATAC+CGG - chr3_1:77446585-77446604 None:intergenic 50.0%
CCACAAGGACTGCCTTAGAA+AGG - chr3_1:77446884-77446903 None:intergenic 50.0%
!! CCTTTCTAAGGCAGTCCTTG+TGG + chr3_1:77446881-77446900 Msa0377050:CDS 50.0%
!! TCTGCTGCTTTGTTCCCACA+AGG - chr3_1:77446899-77446918 None:intergenic 50.0%
AAGCGGATCACCAGTGATAG+TGG + chr3_1:77446973-77446992 Msa0377050:CDS 50.0%
TTTCCGGCTACTGAGTTCGC+CGG - chr3_1:77443627-77443646 None:intergenic 55.0%
AATATCCCACCAAGTGGGGC+CGG - chr3_1:77444815-77444834 None:intergenic 55.0%
CTGACCTCAGGAAGAGATCC+TGG + chr3_1:77445283-77445302 Msa0377050:CDS 55.0%
! GAATTGCGAGGCACTATGCC+AGG - chr3_1:77445304-77445323 None:intergenic 55.0%
ACTGAGCAATGAGAGCAGCG+GGG - chr3_1:77445478-77445497 None:intergenic 55.0%
GATCATCACTGCCCATGGGT+TGG + chr3_1:77445523-77445542 Msa0377050:CDS 55.0%
! TGCAGGAGCTTTAGTGCACC+GGG + chr3_1:77445882-77445901 Msa0377050:intron 55.0%
TTGCCGGCACCATTTGACGT+CGG + chr3_1:77447366-77447385 Msa0377050:three_prime_UTR 55.0%
ATGCCGACGTCAAATGGTGC+CGG - chr3_1:77447372-77447391 None:intergenic 55.0%
ACAAATGCATCCTCCGGCGC+CGG + chr3_1:77443605-77443624 Msa0377050:exon 60.0%
CACGGCGACAGCGCAATTAC+CGG + chr3_1:77446179-77446198 Msa0377050:intron 60.0%
TCCATGTAGCCGGCCCCACT+TGG + chr3_1:77444803-77444822 Msa0377050:intron 65.0%
ACCAAGTGGGGCCGGCTACA+TGG - chr3_1:77444807-77444826 None:intergenic 65.0%
ATGTAGCCGGCCCCACTTGG+TGG + chr3_1:77444806-77444825 Msa0377050:intron 65.0%
TGTAGCCGGCCCCACTTGGT+GGG + chr3_1:77444807-77444826 Msa0377050:intron 65.0%
GAGCAATGAGAGCAGCGGGG+AGG - chr3_1:77445475-77445494 None:intergenic 65.0%
CTCCTGCATACGCAGGGTCC+GGG - chr3_1:77445870-77445889 None:intergenic 65.0%
GCTCCTGCATACGCAGGGTC+CGG - chr3_1:77445871-77445890 None:intergenic 65.0%
GCTACTGAGTTCGCCGGCGC+CGG - chr3_1:77443621-77443640 None:intergenic 70.0%
! GCGCCGGCGAACTCAGTAGC+CGG + chr3_1:77443621-77443640 Msa0377050:CDS 70.0%
CATACGCAGGGTCCGGGACG+AGG - chr3_1:77445864-77445883 None:intergenic 70.0%
GTCCCGGACCCTGCGTATGC+AGG + chr3_1:77445865-77445884 Msa0377050:intron 70.0%
! ACTGAGTTCGCCGGCGCCGG+AGG - chr3_1:77443618-77443637 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 77443598 77447396 77443598 ID=Msa0377050;Name=Msa0377050
chr3_1 mRNA 77443598 77447396 77443598 ID=Msa0377050-mRNA-1;Parent=Msa0377050;Name=Msa0377050-mRNA-1;_AED=0.05;_eAED=0.05;_QI=11|1|1|1|1|1|5|361|426
chr3_1 exon 77443598 77443698 77443598 ID=Msa0377050-mRNA-1:exon:18518;Parent=Msa0377050-mRNA-1
chr3_1 exon 77443787 77443969 77443787 ID=Msa0377050-mRNA-1:exon:18519;Parent=Msa0377050-mRNA-1
chr3_1 exon 77445265 77445561 77445265 ID=Msa0377050-mRNA-1:exon:18520;Parent=Msa0377050-mRNA-1
chr3_1 exon 77446190 77446423 77446190 ID=Msa0377050-mRNA-1:exon:18521;Parent=Msa0377050-mRNA-1
chr3_1 exon 77446559 77447396 77446559 ID=Msa0377050-mRNA-1:exon:18522;Parent=Msa0377050-mRNA-1
chr3_1 five_prime_UTR 77443598 77443608 77443598 ID=Msa0377050-mRNA-1:five_prime_utr;Parent=Msa0377050-mRNA-1
chr3_1 CDS 77443609 77443698 77443609 ID=Msa0377050-mRNA-1:cds;Parent=Msa0377050-mRNA-1
chr3_1 CDS 77443787 77443969 77443787 ID=Msa0377050-mRNA-1:cds;Parent=Msa0377050-mRNA-1
chr3_1 CDS 77445265 77445561 77445265 ID=Msa0377050-mRNA-1:cds;Parent=Msa0377050-mRNA-1
chr3_1 CDS 77446190 77446423 77446190 ID=Msa0377050-mRNA-1:cds;Parent=Msa0377050-mRNA-1
chr3_1 CDS 77446559 77447035 77446559 ID=Msa0377050-mRNA-1:cds;Parent=Msa0377050-mRNA-1
chr3_1 three_prime_UTR 77447036 77447396 77447036 ID=Msa0377050-mRNA-1:three_prime_utr;Parent=Msa0377050-mRNA-1
Gene Sequence

>Msa0377050

ATGCATCCTCCGGCGCCGGCGAACTCAGTAGCCGGAAATACCGTTGATCCTTCGCTCATCAGAACCTATCGCGCTTGGAAAGGAAATAACGTGTTTTTTCTTGGAGGGAGGTTTATATTTGGACCTGATGTGAAATCTATATTTACAACGCTCTTTCTTGTGATTGCCCCTGTTGCTGTTTTCTGTGCTTTTGTAGCTAGAAAATTCTTTGATGATTTTCCTAATCACTCTGGATATTCAATTTTGATTCTTGTTATTCTTCTCACAACCTTTGTTCTGATTGCTCTTATACTGACCTCAGGAAGAGATCCTGGCATAGTGCCTCGCAATTCTTATCCTCCACTCCCAGATAATTATGATGGAAGTGACAGTAACAACAGTGAACAAAATCCACCACCACATTTACCACGATCCAAGGAAGTAATTGTCAATGGAATAGCTGTGAGAGTAAAATATTGCGATACTTGCATGCTGTATAGACCTCCCCGCTGCTCTCATTGCTCAGTATGTGATAACTGTGTGGAGCGATTTGATCATCACTGCCCATGGGTTGGTCAGTGTATTGGACTGCGCAATTACCGGTTCTACTACATGTTTGTTTTCTCTGCAACCCTGCTTTGCCTTTATGTTCATGCCTTTTGCTGGGTTTACATCATGAGGATCAAGAACTCAGAGGAGATATCGATCTGGAAAGCAATGATCAAAACCCCTGCTTCCATTGCACTAATAATATACACATTCATTGCTGTCTGGTTTGTTGGAGGACTCACTTGTTTCCATACATATCTAATCAGCACAAACCAGTCTACATATGAAAATTTTAGATACCGGTATGACCGACAAGTCAACCCTTATAACAAAGGGCTAATTGAGAACTTCAAAGAAGTATTCTGCTCTTCCATTCCCATATCCAAAAACAATTTCAGGTCCAAGGTTCCAAAAGAACCAACAGAATCATCTAGACAAAGAGGTGTTGATACCCTTATGATGCCAGTTTACAATGAGGCTGATGAGGTGGAAAAAGATTATAAAGACGAGGAATATGGCAAGAGTAGTGATTTAAGTGATACATCTGTGGATTTAGGCAGTATGCTTCACACAGAAAGGGGACAGAGACAAGTTGCTTCCTTTCTAAGGCAGTCCTTGTGGGAACAAAGCAGCAGAAAATGGGAAACAGCTTCTGATGTTCTTGACGAGGTACACGAAGACGACGAATCAAAGCGGATCACCAGTGATAGTGGTAATGAACCTGGTGGCAACTCAACAAAAACGCCTCTATAA
Protein sequence

>Msa0377050

MHPPAPANSVAGNTVDPSLIRTYRAWKGNNVFFLGGRFIFGPDVKSIFTTLFLVIAPVAVFCAFVARKFFDDFPNHSGYSILILVILLTTFVLIALILTSGRDPGIVPRNSYPPLPDNYDGSDSNNSEQNPPPHLPRSKEVIVNGIAVRVKYCDTCMLYRPPRCSHCSVCDNCVERFDHHCPWVGQCIGLRNYRFYYMFVFSATLLCLYVHAFCWVYIMRIKNSEEISIWKAMIKTPASIALIIYTFIAVWFVGGLTCFHTYLISTNQSTYENFRYRYDRQVNPYNKGLIENFKEVFCSSIPISKNNFRSKVPKEPTESSRQRGVDTLMMPVYNEADEVEKDYKDEEYGKSSDLSDTSVDLGSMLHTERGQRQVASFLRQSLWEQSSRKWETASDVLDEVHEDDESKRITSDSGNEPGGNSTKTPL*