AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0378100

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0378100 MtrunA17_Chr3g0130011 99.441 358 2 0 1 358 1 358 0.0 741
Msa0378100 MtrunA17_Chr3g0130061 86.592 358 48 0 1 358 1 358 0.0 647
Msa0378100 MtrunA17_Chr2g0314271 58.790 347 142 1 12 358 9 354 4.72e-159 449
Msa0378100 MtrunA17_Chr3g0128011 37.429 350 210 6 14 358 72 417 7.86e-71 227
Msa0378100 MtrunA17_Chr5g0448091 36.286 350 215 5 14 358 17 363 2.12e-68 219
Msa0378100 MtrunA17_Chr8g0367441 36.207 348 207 7 20 358 36 377 9.14e-67 215
Msa0378100 MtrunA17_Chr7g0276411 33.913 345 219 4 20 358 21 362 4.40e-66 213
Msa0378100 MtrunA17_Chr8g0367491 33.908 348 221 5 17 358 32 376 1.31e-65 212
Msa0378100 MtrunA17_Chr8g0367451 34.557 327 205 5 20 340 35 358 3.21e-63 206
Msa0378100 MtrunA17_Chr1g0200491 36.267 375 210 11 2 358 9 372 7.47e-63 205
Msa0378100 MtrunA17_Chr7g0276401 33.523 352 228 4 10 358 27 375 1.15e-62 204
Msa0378100 MtrunA17_Chr7g0218211 36.314 369 216 9 2 358 8 369 1.57e-62 204
Msa0378100 MtrunA17_Chr1g0163611 35.457 361 217 9 9 358 15 370 7.44e-62 202
Msa0378100 MtrunA17_Chr8g0367501 33.618 351 216 8 14 355 16 358 2.29e-61 202
Msa0378100 MtrunA17_Chr1g0163601 35.734 361 216 9 9 358 15 370 3.11e-61 201
Msa0378100 MtrunA17_Chr7g0218131 36.658 371 212 11 2 358 9 370 1.02e-60 199
Msa0378100 MtrunA17_Chr7g0218181 36.261 353 203 8 17 358 26 367 3.90e-60 197
Msa0378100 MtrunA17_Chr7g0218271 34.316 373 223 9 2 358 9 375 3.57e-59 195
Msa0378100 MtrunA17_Chr1g0163621 35.556 360 218 8 9 358 29 384 5.27e-59 195
Msa0378100 MtrunA17_Chr2g0307521 35.246 366 219 10 3 358 6 363 1.94e-58 193
Msa0378100 MtrunA17_Chr7g0218261 35.310 371 216 12 2 358 8 368 2.56e-58 193
Msa0378100 MtrunA17_Chr3g0085201 38.567 293 167 6 73 358 71 357 1.17e-57 191
Msa0378100 MtrunA17_Chr7g0218301 37.288 295 170 6 73 358 87 375 3.97e-56 187
Msa0378100 MtrunA17_Chr3g0085211 37.543 293 170 6 73 358 84 370 4.87e-56 187
Msa0378100 MtrunA17_Chr8g0367381 35.647 317 170 8 20 327 36 327 3.04e-55 184
Msa0378100 MtrunA17_Chr4g0022021 33.146 356 225 9 7 355 16 365 9.29e-52 176
Msa0378100 MtrunA17_Chr8g0345851 35.606 264 167 3 95 358 30 290 2.17e-51 172
Msa0378100 MtrunA17_Chr4g0021981 32.022 356 229 9 7 355 16 365 6.44e-48 166
Msa0378100 MtrunA17_Chr6g0482291 41.398 186 99 3 173 358 1 176 9.52e-42 144
Msa0378100 MtrunA17_Chr3g0121301 29.787 329 214 11 32 354 40 357 5.85e-37 136
Msa0378100 MtrunA17_Chr1g0188391 27.976 336 222 10 31 355 32 358 1.17e-35 133
Msa0378100 MtrunA17_Chr7g0219161 29.283 321 209 9 31 343 32 342 2.45e-34 129
Msa0378100 MtrunA17_Chr7g0219141 29.573 328 210 10 31 350 32 346 1.38e-32 124
Msa0378100 MtrunA17_Chr7g0223241 28.024 339 214 11 29 356 29 348 2.65e-32 124
Msa0378100 MtrunA17_Chr5g0432251 27.500 320 218 8 31 343 32 344 5.63e-32 123
Msa0378100 MtrunA17_Chr4g0040621 29.143 350 223 12 12 346 18 357 7.18e-32 123
Msa0378100 MtrunA17_Chr1g0188371 28.213 319 212 9 29 338 30 340 8.56e-32 123
Msa0378100 MtrunA17_Chr7g0223231 28.235 340 212 11 29 356 29 348 1.39e-31 122
Msa0378100 MtrunA17_Chr4g0046531 27.647 340 221 9 29 357 392 717 3.32e-31 124
Msa0378100 MtrunA17_Chr4g0046531 29.721 323 212 9 29 345 30 343 1.01e-30 123
Msa0378100 MtrunA17_Chr4g0014561 30.172 348 221 11 24 357 23 362 3.51e-31 121
Msa0378100 MtrunA17_Chr5g0432301 27.747 364 243 12 2 357 8 359 6.14e-31 120
Msa0378100 MtrunA17_Chr5g0432241 28.125 352 229 12 2 343 8 345 6.21e-31 120
Msa0378100 MtrunA17_Chr4g0046361 28.487 337 223 11 31 357 32 360 7.28e-31 120
Msa0378100 MtrunA17_Chr4g0014681 29.885 348 222 11 24 357 23 362 4.87e-30 118
Msa0378100 MtrunA17_Chr4g0046341 29.118 340 220 10 31 357 32 363 6.93e-28 112
Msa0378100 MtrunA17_Chr8g0367401 46.364 110 58 1 150 259 2 110 1.55e-27 105
Msa0378100 MtrunA17_Chr5g0432211 26.225 347 228 11 2 343 7 330 7.42e-27 108
Msa0378100 MtrunA17_Chr4g0014641 28.319 339 223 10 31 357 32 362 2.18e-26 108
Msa0378100 MtrunA17_Chr5g0432261 28.213 319 189 13 31 343 28 312 1.10e-24 102
Msa0378100 MtrunA17_Chr1g0170941 55.844 77 33 1 181 257 1 76 7.91e-22 88.2
Msa0378100 MtrunA17_Chr4g0014661 27.964 329 219 11 24 343 23 342 2.04e-21 94.0
Msa0378100 MtrunA17_Chr4g0014591 27.660 329 220 11 24 343 23 342 1.63e-18 85.5
Msa0378100 MtrunA17_Chr7g0219171 31.343 134 86 2 227 357 117 247 1.74e-18 84.0
Msa0378100 MtrunA17_Chr8g0367471 55.738 61 26 1 181 241 9 68 9.83e-18 77.8
Msa0378100 MtrunA17_Chr8g0367461 37.500 112 69 1 247 358 2 112 1.34e-16 75.1
Msa0378100 MtrunA17_Chr8g0367421 35.455 110 53 1 150 259 2 93 5.61e-16 73.6
Msa0378100 MtrunA17_Chr8g0367391 35.514 107 62 3 255 358 32 134 6.66e-12 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0378100 AT3G53140.1 57.550 351 145 1 12 358 9 359 4.63e-152 432
Msa0378100 AT5G54160.1 40.719 334 189 6 14 343 18 346 7.21e-76 238
Msa0378100 AT1G33030.1 34.985 343 214 7 23 358 10 350 4.18e-58 192
Msa0378100 AT1G51990.1 34.812 293 184 4 53 340 54 344 1.43e-57 191
Msa0378100 AT1G51990.2 35.154 293 183 4 53 340 54 344 5.82e-57 189
Msa0378100 AT1G77520.1 31.805 349 223 7 22 358 36 381 5.60e-53 179
Msa0378100 AT1G77530.1 34.091 352 211 10 22 358 36 381 4.07e-44 156
Msa0378100 AT1G21100.1 32.778 360 229 9 8 358 18 373 4.26e-41 148
Msa0378100 AT5G53810.1 33.025 324 201 8 29 339 39 359 1.32e-40 147
Msa0378100 AT1G63140.2 31.322 348 226 7 22 358 36 381 4.41e-40 145
Msa0378100 AT1G63140.4 31.322 348 226 7 22 358 56 401 8.52e-40 145
Msa0378100 AT1G21120.1 32.778 360 229 10 8 358 18 373 1.18e-39 144
Msa0378100 AT1G21130.1 32.222 360 231 9 8 358 18 373 1.33e-39 144
Msa0378100 AT1G21120.2 32.778 360 229 10 8 358 66 421 5.65e-39 144
Msa0378100 AT1G21110.1 32.222 360 231 9 8 358 18 373 8.55e-39 142
Msa0378100 AT1G76790.1 31.476 359 229 9 12 358 12 365 2.23e-38 140
Msa0378100 AT5G37170.2 38.660 194 115 4 167 358 43 234 5.25e-38 136
Msa0378100 AT5G37170.3 39.362 188 110 4 173 358 1 186 1.34e-37 134
Msa0378100 AT5G37170.1 38.660 194 115 4 167 358 143 334 6.48e-37 136
Msa0378100 AT1G62900.1 38.220 191 117 1 168 358 16 205 1.38e-34 126
Msa0378100 AT1G33030.3 34.263 251 157 6 23 266 10 259 4.34e-34 127
Msa0378100 AT1G33030.2 34.836 244 151 6 23 259 10 252 4.66e-34 127
Msa0378100 AT4G35160.1 29.752 363 234 10 1 348 15 371 6.46e-34 129
Msa0378100 AT4G35150.1 26.891 357 209 9 1 348 1 314 1.02e-30 119
Msa0378100 AT1G63140.1 32.129 249 156 7 22 259 56 302 1.17e-23 99.8
Msa0378100 AT1G21130.2 31.206 282 180 8 8 278 18 296 2.45e-22 95.9
Msa0378100 AT1G77530.2 32.314 229 140 7 22 238 36 261 2.13e-16 78.6
Msa0378100 AT1G63140.3 30.131 229 147 7 21 238 55 281 3.24e-14 72.8

Find 124 sgRNAs with CRISPR-Local

Find 328 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGAAGCGAGGCTTGCCATTT+TGG 0.196493 3_1:-78803562 Msa0378100:CDS
GTTGATGTTGGTGGCAATTC+TGG 0.233978 3_1:-78802521 Msa0378100:CDS
GAGCTAAGATGCTAATTAAT+TGG 0.280541 3_1:-78799333 Msa0378100:three_prime_UTR
TCCGCCATTGGGACGGACTA+TGG 0.310272 3_1:+78803422 None:intergenic
TGATGATGGGGAAAATAATA+AGG 0.319795 3_1:-78799362 Msa0378100:three_prime_UTR
TAAAACAAACTCATTTCTTC+TGG 0.323627 3_1:+78802626 None:intergenic
AATTCAAGTACAGGCAAATA+AGG 0.328492 3_1:+78799430 None:intergenic
TATTTGTAAAGCCAACAAAT+TGG 0.338396 3_1:-78799082 None:intergenic
AGAAATGTTCGAATTTCAAC+TGG 0.348736 3_1:-78799165 Msa0378100:three_prime_UTR
TGAAAGTACCTGAAGCTATA+TGG 0.371128 3_1:-78803488 Msa0378100:CDS
CCACCTTGCCATATAGCTTC+AGG 0.378883 3_1:+78803480 None:intergenic
TTGATGCCTTTGAGTATGTT+TGG 0.379016 3_1:+78802467 None:intergenic
GCAAGCCTCGCTTCACTTTG+AGG 0.394145 3_1:+78803570 None:intergenic
AACAAATTAGTAAACAATAA+TGG 0.397360 3_1:-78803619 Msa0378100:exon
AGTGGTGTGATAGATGTAAT+TGG 0.399809 3_1:+78803831 None:intergenic
AAAATTGATTCTTTGTGAAC+CGG 0.399849 3_1:-78799620 Msa0378100:CDS
CAGGCAAATAAGGATCAATA+TGG 0.400215 3_1:+78799440 None:intergenic
CCATTGCAACCAACGAAAGT+TGG 0.400413 3_1:-78799198 Msa0378100:three_prime_UTR
TCTTTGTGAACCGGTGTTGC+CGG 0.403316 3_1:-78799611 Msa0378100:CDS
TGGGGATGCTATCTTCATTA+AGG 0.409531 3_1:-78802133 Msa0378100:intron
CATTGTTGGCGGCTGACATA+TGG 0.414881 3_1:-78799558 Msa0378100:CDS
TTCAGCGTCTCCTCCGCCAT+TGG 0.420478 3_1:+78803410 None:intergenic
AAGTTGTTTGAATTCTTCTT+CGG 0.424797 3_1:+78799498 None:intergenic
CATTGCAACCAACGAAAGTT+GGG 0.438041 3_1:-78799197 Msa0378100:three_prime_UTR
TAAAAGAACAAGAGCATTGT+TGG 0.438527 3_1:-78799572 Msa0378100:CDS
TTATTTAAACCTGATGGTGC+TGG 0.448459 3_1:+78803238 None:intergenic
AACGGCCATGCTCGCAGGTA+CGG 0.451973 3_1:+78802734 None:intergenic
TAGTAAACAATAATGGAGAA+TGG 0.453157 3_1:-78803612 Msa0378100:exon
AGTAAACAATAATGGAGAAT+GGG 0.454231 3_1:-78803611 Msa0378100:exon
TCAGCGTCTCCTCCGCCATT+GGG 0.454837 3_1:+78803411 None:intergenic
AATGACAATGTATAGAACTA+AGG 0.459777 3_1:-78799533 Msa0378100:CDS
CACTTGAATCAGTTCCGGCT+GGG 0.462198 3_1:-78802152 Msa0378100:CDS
CCTGCGAGCATGGCCGTTGG+TGG 0.463499 3_1:-78802729 Msa0378100:CDS
AATGTGTGCAAGTTCCAAAA+TGG 0.463723 3_1:+78803548 None:intergenic
AAACAACTTGGCATTTCTGC+TGG 0.463760 3_1:-78799484 Msa0378100:CDS
GAGAATTATGATGGCTTCAA+AGG 0.465146 3_1:-78802557 Msa0378100:CDS
GAATATAGTCATATTATAGT+AGG 0.466952 3_1:-78804056 Msa0378100:five_prime_UTR
TGTGGATGGTGCCAATTTGT+TGG 0.467905 3_1:+78799071 None:intergenic
CCAACTTTCGTTGGTTGCAA+TGG 0.468729 3_1:+78799198 None:intergenic
TTTCATAAATGAGCAGAAGA+AGG 0.468809 3_1:-78799409 Msa0378100:exon
TTACTCTCATCGGTCTGCTC+CGG 0.470793 3_1:+78799592 None:intergenic
TGATGCACTTGAATCAGTTC+CGG 0.476408 3_1:-78802157 Msa0378100:CDS
AGAATTTGAGAGGCAGAGAG+TGG 0.478385 3_1:+78803447 None:intergenic
CCACCAACGGCCATGCTCGC+AGG 0.480027 3_1:+78802729 None:intergenic
GATCTAAGCCCAACTTTCGT+TGG 0.489521 3_1:+78799189 None:intergenic
TGTGGTGCTTTATGTGATGA+TGG 0.490617 3_1:-78799376 Msa0378100:three_prime_UTR
TAGTATAAGTGGTGAGCAAA+CGG 0.493082 3_1:+78803370 None:intergenic
GCATATGCATATTGCACAAA+GGG 0.496481 3_1:-78802650 Msa0378100:CDS
CATTTATGAAATTCAAGTAC+AGG 0.499673 3_1:+78799421 None:intergenic
GAAATGTTGGAGAATTATGA+TGG 0.500624 3_1:-78802566 Msa0378100:CDS
TACAAGGCTCTTCCAGTGGC+CGG 0.508003 3_1:-78799643 Msa0378100:CDS
ACGGCCATGCTCGCAGGTAC+GGG 0.509344 3_1:+78802735 None:intergenic
TCTTCTGCACCTCAATATCC+AGG 0.511364 3_1:-78802422 Msa0378100:intron
GCACTTGAATCAGTTCCGGC+TGG 0.511694 3_1:-78802153 Msa0378100:CDS
GAGAAGAGAGAGAAAGAGAG+TGG 0.514272 3_1:+78804294 None:intergenic
GTGGTGCTTTATGTGATGAT+GGG 0.514769 3_1:-78799375 Msa0378100:three_prime_UTR
GACTAATTACCTGGATATTG+AGG 0.516427 3_1:+78802413 None:intergenic
GGCCTTGCAAAGTTGTTACA+AGG 0.518740 3_1:-78799659 Msa0378100:CDS
AGGTGCAGAAGAGATCATAT+CGG 0.519685 3_1:+78802433 None:intergenic
TTCTCGAACGGTTCCACAGT+TGG 0.522298 3_1:+78802689 None:intergenic
TCCAACATTTCCCTCATGTA+GGG 0.523535 3_1:+78802578 None:intergenic
TCTCCGTGCAGCTTCTCGAA+CGG 0.525123 3_1:+78802677 None:intergenic
GCCCTACATGAGGGAAATGT+TGG 0.530544 3_1:-78802579 Msa0378100:CDS
CTGCGAGCATGGCCGTTGGT+GGG 0.530884 3_1:-78802728 Msa0378100:CDS
TGCAGTGGACAGTGTTAACA+TGG 0.535443 3_1:-78799702 Msa0378100:intron
TCGGTCTGCTCCGGCAACAC+CGG 0.535499 3_1:+78799601 None:intergenic
TGAATATTTATTCACAGTCA+AGG 0.535698 3_1:+78799301 None:intergenic
GGGCAATGACATCCCGGACA+TGG 0.544215 3_1:+78802598 None:intergenic
CAGGTCAGACCATCATCATC+GGG 0.545460 3_1:+78803276 None:intergenic
CGTCTCCTCCGCCATTGGGA+CGG 0.546520 3_1:+78803415 None:intergenic
GCTCTTGTTCCCGATGATGA+TGG 0.547808 3_1:-78803285 Msa0378100:CDS
AGAAAGTTTAAGATATAATG+AGG 0.552535 3_1:+78803864 None:intergenic
AGGACCCGTACCTGCGAGCA+TGG 0.558958 3_1:-78802739 Msa0378100:CDS
ATGACAATGTATAGAACTAA+GGG 0.561414 3_1:-78799532 Msa0378100:CDS
GGTGCAGAAGAGATCATATC+GGG 0.566072 3_1:+78802434 None:intergenic
AGCCTTGTAACAACTTTGCA+AGG 0.570449 3_1:+78799657 None:intergenic
ACAGGTCAGACCATCATCAT+CGG 0.570773 3_1:+78803275 None:intergenic
CATGTAGGGCAATGACATCC+CGG 0.570892 3_1:+78802592 None:intergenic
GCCGTTGGTGGGAGACGCAG+TGG 0.570986 3_1:-78802717 Msa0378100:CDS
ACTTGAATCAGTTCCGGCTG+GGG 0.571520 3_1:-78802151 Msa0378100:CDS
CTCCAACATTTCCCTCATGT+AGG 0.575549 3_1:+78802577 None:intergenic
TCCATAGTCCGTCCCAATGG+CGG 0.577664 3_1:-78803423 Msa0378100:CDS
ACTTGAGCAGCAATGGTGAA+AGG 0.580995 3_1:-78803335 Msa0378100:CDS
GTTGAGGACTTGAGCAGCAA+TGG 0.582872 3_1:-78803342 Msa0378100:CDS
AGCTTTACCGACATCGGTGA+GGG 0.585301 3_1:+78803305 None:intergenic
CTCTCCATAGTCCGTCCCAA+TGG 0.588927 3_1:-78803426 Msa0378100:CDS
AAGTACTCCCTCACCGATGT+CGG 0.589045 3_1:-78803312 Msa0378100:CDS
GAAGAAGAATTCAAACAACT+TGG 0.589425 3_1:-78799496 Msa0378100:CDS
GTGGAGACTCTAGTTGATGT+TGG 0.592031 3_1:-78802533 Msa0378100:CDS
GACAATAAGACATGACGACA+AGG 0.593499 3_1:+78804115 None:intergenic
GTACCTGAAGCTATATGGCA+AGG 0.593518 3_1:-78803483 Msa0378100:CDS
AAGAACAAGAGCATTGTTGG+CGG 0.593672 3_1:-78799569 Msa0378100:CDS
GTTGGTGGGAGACGCAGTGG+AGG 0.598693 3_1:-78802714 Msa0378100:CDS
CAAATAAGGATCAATATGGA+AGG 0.598974 3_1:+78799444 None:intergenic
GGATGTCATTGCCCTACATG+AGG 0.599139 3_1:-78802589 Msa0378100:CDS
AAATATCCAAACATACTCAA+AGG 0.599530 3_1:-78802473 Msa0378100:CDS
ATAGTCCGTCCCAATGGCGG+AGG 0.606262 3_1:-78803420 Msa0378100:CDS
AACAAGAGCTTTACCGACAT+CGG 0.606967 3_1:+78803299 None:intergenic
TCCACTGCGTCTCCCACCAA+CGG 0.608024 3_1:+78802716 None:intergenic
ATGAAGATAGCATCCCCAGC+CGG 0.608469 3_1:+78802138 None:intergenic
TTATGATGGCTTCAAAGGTG+TGG 0.610913 3_1:-78802552 Msa0378100:CDS
ACAATAAGACATGACGACAA+GGG 0.612434 3_1:+78804116 None:intergenic
GACAGATGAAGAATTCAAGA+AGG 0.615326 3_1:-78799680 Msa0378100:CDS
GATGTCATTGCCCTACATGA+GGG 0.616477 3_1:-78802588 Msa0378100:CDS
TTGTTACAAGGCTCTTCCAG+TGG 0.616923 3_1:-78799647 Msa0378100:CDS
TGGTGCTTTATGTGATGATG+GGG 0.620869 3_1:-78799374 Msa0378100:three_prime_UTR
TTGGCTTTACAAATACGCAA+TGG 0.625680 3_1:+78799090 None:intergenic
GACTATGGAGAGAATTTGAG+AGG 0.637733 3_1:+78803437 None:intergenic
AGCATATGCATATTGCACAA+AGG 0.638121 3_1:-78802651 Msa0378100:CDS
GAACCGTTCGAGAAGCTGCA+CGG 0.649830 3_1:-78802680 Msa0378100:CDS
GTACCTGCGAGCATGGCCGT+TGG 0.655083 3_1:-78802732 Msa0378100:CDS
GAGCTTTACCGACATCGGTG+AGG 0.661236 3_1:+78803304 None:intergenic
TGAGCAAACGGAGGATACGT+TGG 0.661794 3_1:+78803382 None:intergenic
GAGACTCTAGTTGATGTTGG+TGG 0.662906 3_1:-78802530 Msa0378100:CDS
GAAGAAGGCTTTGAAGTGTG+TGG 0.663450 3_1:-78799394 Msa0378100:three_prime_UTR
GGAGAATGGGAAAGTTGCTG+TGG 0.664770 3_1:-78803598 Msa0378100:CDS
AGAACAGCATTAAGGGACGT+AGG 0.670135 3_1:+78803516 None:intergenic
CGCAGTGGAGGATCCAACTG+TGG 0.674969 3_1:-78802702 Msa0378100:CDS
CCTGAAGCTATATGGCAAGG+TGG 0.693132 3_1:-78803480 Msa0378100:CDS
TAAAGCCTCAAAGTGAAGCG+AGG 0.698513 3_1:-78803575 Msa0378100:CDS
TATAAGTGGTGAGCAAACGG+AGG 0.715321 3_1:+78803373 None:intergenic
GAAATGTTCGAATTTCAACT+GGG 0.718821 3_1:-78799164 Msa0378100:three_prime_UTR
TATATAGGTATAACACACGT+CGG 0.727621 3_1:-78802183 Msa0378100:intron
ATAGGTATAACACACGTCGG+TGG 0.737739 3_1:-78802180 Msa0378100:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAAAAATTAAAAATTCTCA+AGG - chr3_1:78799547-78799566 Msa0378100:CDS 10.0%
!! ACAGTTATTATAATTATTAT+TGG - chr3_1:78800356-78800375 Msa0378100:intron 10.0%
!! CAGTTATTATAATTATTATT+GGG - chr3_1:78800357-78800376 Msa0378100:intron 10.0%
!!! TTTTTTAAATTAGACTAATT+AGG + chr3_1:78801075-78801094 None:intergenic 10.0%
!!! ATAACCAAAATTTTATTATT+AGG - chr3_1:78801457-78801476 Msa0378100:intron 10.0%
!! AAAATTTACATCATAATTTA+AGG - chr3_1:78802913-78802932 Msa0378100:intron 10.0%
!! AAATTTACATCATAATTTAA+GGG - chr3_1:78802914-78802933 Msa0378100:intron 10.0%
!!! ATAGTTTTATGTTATTAACA+TGG - chr3_1:78799413-78799432 Msa0378100:exon 15.0%
!! AACAAATTAGTAAACAATAA+TGG - chr3_1:78799815-78799834 Msa0378100:intron 15.0%
!! AAGAAGAAAAAAAAGATTAA+TGG - chr3_1:78800315-78800334 Msa0378100:intron 15.0%
!!! CTAATATATTTTTTTAAGGA+TGG + chr3_1:78801131-78801150 None:intergenic 15.0%
!! TCCTTAAAAAAATATATTAG+TGG - chr3_1:78801131-78801150 Msa0378100:intron 15.0%
!!! TCCACTAATATATTTTTTTA+AGG + chr3_1:78801135-78801154 None:intergenic 15.0%
!!! TTCAAATTATTTAACTTTTG+TGG - chr3_1:78801224-78801243 Msa0378100:intron 15.0%
!!! TACTCCTAATAATAAAATTT+TGG + chr3_1:78801464-78801483 None:intergenic 15.0%
!!! TACTTACTTTTTTGTTTTTT+TGG - chr3_1:78801563-78801582 Msa0378100:intron 15.0%
!!! ACTTACTTTTTTGTTTTTTT+GGG - chr3_1:78801564-78801583 Msa0378100:intron 15.0%
!! AATTTACATCATAATTTAAG+GGG - chr3_1:78802915-78802934 Msa0378100:intron 15.0%
!!! TATTTTTTATAAGAAACTAG+CGG + chr3_1:78803116-78803135 None:intergenic 15.0%
!!! TTATAATCTTGCTTATTTTA+CGG - chr3_1:78803504-78803523 Msa0378100:CDS 15.0%
!!! AAAGTATCAAATGATATTTT+TGG + chr3_1:78803556-78803575 None:intergenic 15.0%
!! GAATATAGTCATATTATAGT+AGG - chr3_1:78799378-78799397 Msa0378100:three_prime_UTR 20.0%
!!! AGAAAGTTTAAGATATAATG+AGG + chr3_1:78799573-78799592 None:intergenic 20.0%
!!! TTTTTAATGTAATAGATGAG+TGG + chr3_1:78799624-78799643 None:intergenic 20.0%
!! ATAAGTTTATTTAAACCTGA+TGG + chr3_1:78800205-78800224 None:intergenic 20.0%
!! TATAATAACTGTGTATTTGT+TGG + chr3_1:78800348-78800367 None:intergenic 20.0%
!!! TAATTTTGTGGAAATGAATA+TGG - chr3_1:78800398-78800417 Msa0378100:intron 20.0%
!! TACAAAATCAACTTATAAGT+CGG + chr3_1:78800525-78800544 None:intergenic 20.0%
!!! ACGAACTTGTTATAATATAT+GGG + chr3_1:78800586-78800605 None:intergenic 20.0%
!!! AGGTAATTAGTCTATTTTTT+GGG - chr3_1:78801032-78801051 Msa0378100:intron 20.0%
!!! TATATTTTTTTAAGGATGGT+CGG + chr3_1:78801127-78801146 None:intergenic 20.0%
!! AATTTAATAAAATTAGTCCG+TGG + chr3_1:78801184-78801203 None:intergenic 20.0%
!!! AAAATATTTTGGAGATAAGT+AGG + chr3_1:78801354-78801373 None:intergenic 20.0%
!!! GCTAAAGTTGAAAAATATTT+TGG + chr3_1:78801365-78801384 None:intergenic 20.0%
!! ATAAAAAAGTAAGTAGATAG+TGG + chr3_1:78801439-78801458 None:intergenic 20.0%
!! TATGTTTGAACATTAGTTAT+TGG + chr3_1:78801502-78801521 None:intergenic 20.0%
!!! TTTTAATTTATCTAAGGTGT+TGG + chr3_1:78801622-78801641 None:intergenic 20.0%
!! AAAAAAAAATACAAAAGGTC+AGG - chr3_1:78801645-78801664 Msa0378100:intron 20.0%
!! AAAAAAAATACAAAAGGTCA+GGG - chr3_1:78801646-78801665 Msa0378100:intron 20.0%
!! TTAGACTATTATAACAACAA+GGG - chr3_1:78802457-78802476 Msa0378100:CDS 20.0%
!!! TTTTTTTTCTCTCTTTTCAT+TGG - chr3_1:78802526-78802545 Msa0378100:CDS 20.0%
!!! TAATGATGATCTTGTTTTTT+TGG + chr3_1:78803221-78803240 None:intergenic 20.0%
!! GTAAAATAAGCAAGATTATA+AGG + chr3_1:78803505-78803524 None:intergenic 20.0%
!!! GATACTTTAGATTTTCTTTA+AGG - chr3_1:78803568-78803587 Msa0378100:CDS 20.0%
! GTTAAAAAGTTGTTTGAAAG+TGG + chr3_1:78799658-78799677 None:intergenic 25.0%
! GCTATTTATAGAAAAACGAT+TGG + chr3_1:78799729-78799748 None:intergenic 25.0%
!! TAGTAAACAATAATGGAGAA+TGG - chr3_1:78799822-78799841 Msa0378100:intron 25.0%
!! AGTAAACAATAATGGAGAAT+GGG - chr3_1:78799823-78799842 Msa0378100:intron 25.0%
! CTCAACAAAAATAGTATAAG+TGG + chr3_1:78800078-78800097 None:intergenic 25.0%
!!! CACTTATACTATTTTTGTTG+AGG - chr3_1:78800076-78800095 Msa0378100:intron 25.0%
!!! ACTAAGAGTACTTAATTTTG+TGG - chr3_1:78800386-78800405 Msa0378100:intron 25.0%
!!! CACGAACTTGTTATAATATA+TGG + chr3_1:78800587-78800606 None:intergenic 25.0%
! TCAAAAAAAATCAAACGTAC+AGG - chr3_1:78800675-78800694 Msa0378100:intron 25.0%
! TAAAACAAACTCATTTCTTC+TGG + chr3_1:78800811-78800830 None:intergenic 25.0%
! AAATATCCAAACATACTCAA+AGG - chr3_1:78800961-78800980 Msa0378100:intron 25.0%
! CAAAAAATAGACTAATTACC+TGG + chr3_1:78801033-78801052 None:intergenic 25.0%
!!! CAGGTAATTAGTCTATTTTT+TGG - chr3_1:78801031-78801050 Msa0378100:intron 25.0%
! GTTAGATTGACAAATATTAG+AGG - chr3_1:78801100-78801119 Msa0378100:intron 25.0%
!!! CATATCTCTATTTTTGAGAA+GGG + chr3_1:78801411-78801430 None:intergenic 25.0%
!!! TCATATCTCTATTTTTGAGA+AGG + chr3_1:78801412-78801431 None:intergenic 25.0%
!! TAGCAACCATTTTGTATTAT+GGG + chr3_1:78801531-78801550 None:intergenic 25.0%
!! TTAGCAACCATTTTGTATTA+TGG + chr3_1:78801532-78801551 None:intergenic 25.0%
! TTAAATCTTGGTTTCTATGA+CGG + chr3_1:78801799-78801818 None:intergenic 25.0%
! AAAAATCAGACAAGGAAAAA+GGG - chr3_1:78801876-78801895 Msa0378100:intron 25.0%
!!! TTGGACAATTTTATTTGGTT+GGG + chr3_1:78802050-78802069 None:intergenic 25.0%
!!! ATTGGACAATTTTATTTGGT+TGG + chr3_1:78802051-78802070 None:intergenic 25.0%
! GTTAGACTATTATAACAACA+AGG - chr3_1:78802456-78802475 Msa0378100:CDS 25.0%
! TAGACTATTATAACAACAAG+GGG - chr3_1:78802458-78802477 Msa0378100:CDS 25.0%
!! ATAAGTTAAGTTGTCTCATT+TGG + chr3_1:78802500-78802519 None:intergenic 25.0%
!! TTTTCATTGGTCAAAAACAA+TGG - chr3_1:78802539-78802558 Msa0378100:CDS 25.0%
!!! TTGTTTTATTTGTGACAATG+AGG - chr3_1:78802824-78802843 Msa0378100:intron 25.0%
!! GATCTTTCTTTTCACTTATT+TGG + chr3_1:78803147-78803166 None:intergenic 25.0%
! TTCATAGTACTCACTAAATT+CGG - chr3_1:78803449-78803468 Msa0378100:CDS 25.0%
! AAGCAAGATTATAAGGAATA+TGG + chr3_1:78803498-78803517 None:intergenic 25.0%
!!! GTATAATTATTGTTTTGCAG+TGG - chr3_1:78803717-78803736 Msa0378100:five_prime_UTR 25.0%
!! TTCACAAAGAATCAATTTTC+CGG + chr3_1:78803813-78803832 None:intergenic 25.0%
!! AAAATTGATTCTTTGTGAAC+CGG - chr3_1:78803814-78803833 Msa0378100:five_prime_UTR 25.0%
! AATGACAATGTATAGAACTA+AGG - chr3_1:78803901-78803920 Msa0378100:five_prime_UTR 25.0%
! ATGACAATGTATAGAACTAA+GGG - chr3_1:78803902-78803921 Msa0378100:five_prime_UTR 25.0%
! AAGTTGTTTGAATTCTTCTT+CGG + chr3_1:78803939-78803958 None:intergenic 25.0%
! CATTTATGAAATTCAAGTAC+AGG + chr3_1:78804016-78804035 None:intergenic 25.0%
! TGAATATTTATTCACAGTCA+AGG + chr3_1:78804136-78804155 None:intergenic 25.0%
ATTAAATCTGGGTCATACAT+TGG - chr3_1:78799186-78799205 Msa0378100:three_prime_UTR 30.0%
TTAAATCTGGGTCATACATT+GGG - chr3_1:78799187-78799206 Msa0378100:three_prime_UTR 30.0%
!! CATTTTGAGAACAGCATTAA+GGG + chr3_1:78799928-78799947 None:intergenic 30.0%
!! TCATTTTGAGAACAGCATTA+AGG + chr3_1:78799929-78799948 None:intergenic 30.0%
TTCGATCACATCTAATAGTA+CGG + chr3_1:78800436-78800455 None:intergenic 30.0%
AAAATCAACTTATAAGTCGG+AGG + chr3_1:78800522-78800541 None:intergenic 30.0%
GAAATGTTGGAGAATTATGA+TGG - chr3_1:78800868-78800887 Msa0378100:intron 30.0%
AGACTAATTAGGTTCCAAAA+TGG + chr3_1:78801064-78801083 None:intergenic 30.0%
AACCAAAAAACTAACATGGT+CGG + chr3_1:78801158-78801177 None:intergenic 30.0%
GACAAACCAAAAAACTAACA+TGG + chr3_1:78801162-78801181 None:intergenic 30.0%
!!! TTAGTTTTTTGGTTTGTCCA+CGG - chr3_1:78801164-78801183 Msa0378100:intron 30.0%
! AACTTTTGTGGCATGTATAT+AGG - chr3_1:78801236-78801255 Msa0378100:intron 30.0%
TATATAGGTATAACACACGT+CGG - chr3_1:78801251-78801270 Msa0378100:intron 30.0%
GAGGAAATCATATCTTACTA+TGG + chr3_1:78801389-78801408 None:intergenic 30.0%
!!! CTGGTTGGTTTAAAACTTTT+TGG + chr3_1:78801714-78801733 None:intergenic 30.0%
!!! AAGTTTTAAACCAACCAGAA+AGG - chr3_1:78801716-78801735 Msa0378100:intron 30.0%
GATAATACAACCAACTCAAA+GGG - chr3_1:78801738-78801757 Msa0378100:intron 30.0%
ATAATACAACCAACTCAAAG+GGG - chr3_1:78801739-78801758 Msa0378100:intron 30.0%
TAAATCTTGGTTTCTATGAC+GGG + chr3_1:78801798-78801817 None:intergenic 30.0%
GTCATAGAAACCAAGATTTA+AGG - chr3_1:78801798-78801817 Msa0378100:intron 30.0%
TATTCGTTCACCTTAAATCT+TGG + chr3_1:78801811-78801830 None:intergenic 30.0%
! CTTTTTCCTTGTCTGATTTT+TGG + chr3_1:78801877-78801896 None:intergenic 30.0%
CAAAAATCAGACAAGGAAAA+AGG - chr3_1:78801875-78801894 Msa0378100:intron 30.0%
!! TGGACAATTTTATTTGGTTG+GGG + chr3_1:78802049-78802068 None:intergenic 30.0%
!! TCGGATTGGACAATTTTATT+TGG + chr3_1:78802055-78802074 None:intergenic 30.0%
AAATAAAATTGTCCAATCCG+AGG - chr3_1:78802054-78802073 Msa0378100:intron 30.0%
! CAACTAAATCTAAAGCTACA+CGG - chr3_1:78802100-78802119 Msa0378100:intron 30.0%
CAGTATATTATGCAGTACTT+CGG + chr3_1:78802423-78802442 None:intergenic 30.0%
! TCTTGTTCTTTTACTCTCAT+CGG + chr3_1:78803855-78803874 None:intergenic 30.0%
!! TAAAAGAACAAGAGCATTGT+TGG - chr3_1:78803862-78803881 Msa0378100:five_prime_UTR 30.0%
GAAGAAGAATTCAAACAACT+TGG - chr3_1:78803938-78803957 Msa0378100:five_prime_UTR 30.0%
CAAATAAGGATCAATATGGA+AGG + chr3_1:78803993-78804012 None:intergenic 30.0%
AATTCAAGTACAGGCAAATA+AGG + chr3_1:78804007-78804026 None:intergenic 30.0%
TTTCATAAATGAGCAGAAGA+AGG - chr3_1:78804025-78804044 Msa0378100:five_prime_UTR 30.0%
!! TGATGATGGGGAAAATAATA+AGG - chr3_1:78804072-78804091 Msa0378100:five_prime_UTR 30.0%
GAGCTAAGATGCTAATTAAT+TGG - chr3_1:78804101-78804120 Msa0378100:five_prime_UTR 30.0%
AGAAATGTTCGAATTTCAAC+TGG - chr3_1:78804269-78804288 Msa0378100:intron 30.0%
GAAATGTTCGAATTTCAACT+GGG - chr3_1:78804270-78804289 Msa0378100:intron 30.0%
AGATTTAATGTCACTGTGAG+GGG + chr3_1:78799175-78799194 None:intergenic 35.0%
CAGATTTAATGTCACTGTGA+GGG + chr3_1:78799176-78799195 None:intergenic 35.0%
CTCACAGTGACATTAAATCT+GGG - chr3_1:78799175-78799194 Msa0378100:three_prime_UTR 35.0%
TTGTCATTGCCATTGTATCT+GGG + chr3_1:78799235-78799254 None:intergenic 35.0%
ATTGTCATTGCCATTGTATC+TGG + chr3_1:78799236-78799255 None:intergenic 35.0%
ACAATAAGACATGACGACAA+GGG + chr3_1:78799321-78799340 None:intergenic 35.0%
AGTGGTGTGATAGATGTAAT+TGG + chr3_1:78799606-78799625 None:intergenic 35.0%
! AAGATTGTGTGTTTTCAGCA+GGG + chr3_1:78799776-78799795 None:intergenic 35.0%
! AAAGATTGTGTGTTTTCAGC+AGG + chr3_1:78799777-78799796 None:intergenic 35.0%
AATGTGTGCAAGTTCCAAAA+TGG + chr3_1:78799889-78799908 None:intergenic 35.0%
!! TGAAAGTACCTGAAGCTATA+TGG - chr3_1:78799946-78799965 Msa0378100:intron 35.0%
TAGTATAAGTGGTGAGCAAA+CGG + chr3_1:78800067-78800086 None:intergenic 35.0%
! TTATTTAAACCTGATGGTGC+TGG + chr3_1:78800199-78800218 None:intergenic 35.0%
AGCATATGCATATTGCACAA+AGG - chr3_1:78800783-78800802 Msa0378100:intron 35.0%
GCATATGCATATTGCACAAA+GGG - chr3_1:78800784-78800803 Msa0378100:intron 35.0%
!! TTGTTTTATGCTTCCATGTC+CGG - chr3_1:78800823-78800842 Msa0378100:intron 35.0%
GAGAATTATGATGGCTTCAA+AGG - chr3_1:78800877-78800896 Msa0378100:intron 35.0%
TTGATGCCTTTGAGTATGTT+TGG + chr3_1:78800970-78800989 None:intergenic 35.0%
GACTAATTACCTGGATATTG+AGG + chr3_1:78801024-78801043 None:intergenic 35.0%
!!! TTTTTGGGTCACTACCATTT+TGG - chr3_1:78801047-78801066 Msa0378100:intron 35.0%
!!! ATCTCTATTTTTGAGAAGGG+AGG + chr3_1:78801408-78801427 None:intergenic 35.0%
CATCAGCCCATAATACAAAA+TGG - chr3_1:78801522-78801541 Msa0378100:intron 35.0%
!! TTTATCTAAGGTGTTGGAGT+GGG + chr3_1:78801616-78801635 None:intergenic 35.0%
!! ATTTATCTAAGGTGTTGGAG+TGG + chr3_1:78801617-78801636 None:intergenic 35.0%
! GTTGTATTATCCTTTCTGGT+TGG + chr3_1:78801729-78801748 None:intergenic 35.0%
GTTGGTTGTATTATCCTTTC+TGG + chr3_1:78801733-78801752 None:intergenic 35.0%
GGATAATACAACCAACTCAA+AGG - chr3_1:78801737-78801756 Msa0378100:intron 35.0%
TTGATTTATCCCCTTTGAGT+TGG + chr3_1:78801751-78801770 None:intergenic 35.0%
TCCAGTCTCTAACTTGATTT+GGG + chr3_1:78801921-78801940 None:intergenic 35.0%
TTCCAGTCTCTAACTTGATT+TGG + chr3_1:78801922-78801941 None:intergenic 35.0%
!! CGTGTAGCTTTAGATTTAGT+TGG + chr3_1:78802102-78802121 None:intergenic 35.0%
TACACGGTTTAATCTCAACA+AGG - chr3_1:78802116-78802135 Msa0378100:intron 35.0%
!!! TTTGTGGTGGTTTTTTGTTG+TGG + chr3_1:78802181-78802200 None:intergenic 35.0%
!! TTCAGACTTACTTGCTTTTG+TGG + chr3_1:78802197-78802216 None:intergenic 35.0%
ACCCAAACTCAGAATATATC+CGG - chr3_1:78802347-78802366 Msa0378100:intron 35.0%
TCCGGATATATTCTGAGTTT+GGG + chr3_1:78802351-78802370 None:intergenic 35.0%
ATCCGGATATATTCTGAGTT+TGG + chr3_1:78802352-78802371 None:intergenic 35.0%
AACTCAGAATATATCCGGAT+CGG - chr3_1:78802352-78802371 Msa0378100:intron 35.0%
TATTATGCAGTACTTCGGTT+TGG + chr3_1:78802418-78802437 None:intergenic 35.0%
GTAATAGAAAACTCGTGTAG+TGG - chr3_1:78802796-78802815 Msa0378100:intron 35.0%
AAATTGGATAGACAGCTTTG+TGG - chr3_1:78803083-78803102 Msa0378100:intron 35.0%
ACGTGTTCAATACAATCAAG+TGG - chr3_1:78803327-78803346 Msa0378100:CDS 35.0%
CTGAAAACTAGCTGACAATA+GGG - chr3_1:78803362-78803381 Msa0378100:CDS 35.0%
GACAGATGAAGAATTCAAGA+AGG - chr3_1:78803754-78803773 Msa0378100:five_prime_UTR 35.0%
CAGGCAAATAAGGATCAATA+TGG + chr3_1:78803997-78804016 None:intergenic 35.0%
!! TTGGCTTTACAAATACGCAA+TGG + chr3_1:78804347-78804366 None:intergenic 35.0%
GATTTAATGTCACTGTGAGG+GGG + chr3_1:78799174-78799193 None:intergenic 40.0%
CCAGATTTAATGTCACTGTG+AGG + chr3_1:78799177-78799196 None:intergenic 40.0%
CCTCACAGTGACATTAAATC+TGG - chr3_1:78799174-78799193 Msa0378100:three_prime_UTR 40.0%
GTGACATTAGATGTGTTGTG+TGG - chr3_1:78799209-78799228 Msa0378100:three_prime_UTR 40.0%
ACAATGGCAATGACAATGTG+TGG - chr3_1:78799239-78799258 Msa0378100:three_prime_UTR 40.0%
AATAAGACATGACGACAAGG+GGG + chr3_1:78799319-78799338 None:intergenic 40.0%
CAATAAGACATGACGACAAG+GGG + chr3_1:78799320-78799339 None:intergenic 40.0%
GACAATAAGACATGACGACA+AGG + chr3_1:78799322-78799341 None:intergenic 40.0%
! AGATTGTGTGTTTTCAGCAG+GGG + chr3_1:78799775-78799794 None:intergenic 40.0%
GACTATGGAGAGAATTTGAG+AGG + chr3_1:78800000-78800019 None:intergenic 40.0%
AACAAGAGCTTTACCGACAT+CGG + chr3_1:78800138-78800157 None:intergenic 40.0%
! TGTTTTATGCTTCCATGTCC+GGG - chr3_1:78800824-78800843 Msa0378100:intron 40.0%
TCCAACATTTCCCTCATGTA+GGG + chr3_1:78800859-78800878 None:intergenic 40.0%
TTATGATGGCTTCAAAGGTG+TGG - chr3_1:78800882-78800901 Msa0378100:intron 40.0%
AGGTGCAGAAGAGATCATAT+CGG + chr3_1:78801004-78801023 None:intergenic 40.0%
!!! GACCGACCATGTTAGTTTTT+TGG - chr3_1:78801153-78801172 Msa0378100:intron 40.0%
TGATGCACTTGAATCAGTTC+CGG - chr3_1:78801277-78801296 Msa0378100:intron 40.0%
TGGGGATGCTATCTTCATTA+AGG - chr3_1:78801301-78801320 Msa0378100:intron 40.0%
CACGAACCAAAAATCAGACA+AGG - chr3_1:78801868-78801887 Msa0378100:intron 40.0%
AATCAGACAAGGAAAAAGGG+TGG - chr3_1:78801879-78801898 Msa0378100:intron 40.0%
TCCCAAATCAAGTTAGAGAC+TGG - chr3_1:78801917-78801936 Msa0378100:intron 40.0%
! GCTTCTGTGTCATTATGACT+TGG + chr3_1:78801975-78801994 None:intergenic 40.0%
! AGATTTAGTTGGCTTCCTGT+TGG + chr3_1:78802091-78802110 None:intergenic 40.0%
ACGGTTTAATCTCAACAAGG+TGG - chr3_1:78802119-78802138 Msa0378100:intron 40.0%
! TTTGTTGTGGTTCGATCTCA+GGG + chr3_1:78802168-78802187 None:intergenic 40.0%
!! TTTTGTTGTGGTTCGATCTC+AGG + chr3_1:78802169-78802188 None:intergenic 40.0%
!! AGACTTACTTGCTTTTGTGG+TGG + chr3_1:78802194-78802213 None:intergenic 40.0%
ACAACATGGAAGCTTGTCAT+GGG + chr3_1:78802236-78802255 None:intergenic 40.0%
AACAACATGGAAGCTTGTCA+TGG + chr3_1:78802237-78802256 None:intergenic 40.0%
TCTTCCACGATTCAACAACA+TGG + chr3_1:78802250-78802269 None:intergenic 40.0%
GGATATATTCTGAGTTTGGG+TGG + chr3_1:78802348-78802367 None:intergenic 40.0%
! GAGATTGATAGCTCAGACAT+GGG + chr3_1:78802387-78802406 None:intergenic 40.0%
! TGAGATTGATAGCTCAGACA+TGG + chr3_1:78802388-78802407 None:intergenic 40.0%
TACAATCAAGTGGCTCAACT+AGG - chr3_1:78803337-78803356 Msa0378100:CDS 40.0%
GCTGAAAACTAGCTGACAAT+AGG - chr3_1:78803361-78803380 Msa0378100:CDS 40.0%
TGCTCATAAGTTAGCAAAGG+TGG + chr3_1:78803388-78803407 None:intergenic 40.0%
GGTTGCTCATAAGTTAGCAA+AGG + chr3_1:78803391-78803410 None:intergenic 40.0%
! AGCCTTGTAACAACTTTGCA+AGG + chr3_1:78803780-78803799 None:intergenic 40.0%
!! AAGAACAAGAGCATTGTTGG+CGG - chr3_1:78803865-78803884 Msa0378100:five_prime_UTR 40.0%
AAACAACTTGGCATTTCTGC+TGG - chr3_1:78803950-78803969 Msa0378100:five_prime_UTR 40.0%
TGTGGTGCTTTATGTGATGA+TGG - chr3_1:78804058-78804077 Msa0378100:five_prime_UTR 40.0%
GTGGTGCTTTATGTGATGAT+GGG - chr3_1:78804059-78804078 Msa0378100:five_prime_UTR 40.0%
! TGGTGCTTTATGTGATGATG+GGG - chr3_1:78804060-78804079 Msa0378100:five_prime_UTR 40.0%
CATTGCAACCAACGAAAGTT+GGG - chr3_1:78804237-78804256 Msa0378100:intron 40.0%
GAGAAGAGAGAGAAAGAGAG+TGG + chr3_1:78799143-78799162 None:intergenic 45.0%
ATAAGACATGACGACAAGGG+GGG + chr3_1:78799318-78799337 None:intergenic 45.0%
TAAAGCCTCAAAGTGAAGCG+AGG - chr3_1:78799859-78799878 Msa0378100:intron 45.0%
AGAACAGCATTAAGGGACGT+AGG + chr3_1:78799921-78799940 None:intergenic 45.0%
GTACCTGAAGCTATATGGCA+AGG - chr3_1:78799951-78799970 Msa0378100:intron 45.0%
AGAATTTGAGAGGCAGAGAG+TGG + chr3_1:78799990-78800009 None:intergenic 45.0%
TATAAGTGGTGAGCAAACGG+AGG + chr3_1:78800064-78800083 None:intergenic 45.0%
ACTTGAGCAGCAATGGTGAA+AGG - chr3_1:78800099-78800118 Msa0378100:intron 45.0%
ACAGGTCAGACCATCATCAT+CGG + chr3_1:78800162-78800181 None:intergenic 45.0%
CTGGACGAAAAATGATGCAC+AGG + chr3_1:78800180-78800199 None:intergenic 45.0%
! ATTTTTCGTCCAGCACCATC+AGG - chr3_1:78800187-78800206 Msa0378100:intron 45.0%
GATGTCATTGCCCTACATGA+GGG - chr3_1:78800846-78800865 Msa0378100:intron 45.0%
CTCCAACATTTCCCTCATGT+AGG + chr3_1:78800860-78800879 None:intergenic 45.0%
! GTGGAGACTCTAGTTGATGT+TGG - chr3_1:78800901-78800920 Msa0378100:intron 45.0%
! GAGACTCTAGTTGATGTTGG+TGG - chr3_1:78800904-78800923 Msa0378100:intron 45.0%
!! GTTGATGTTGGTGGCAATTC+TGG - chr3_1:78800913-78800932 Msa0378100:intron 45.0%
GGTGCAGAAGAGATCATATC+GGG + chr3_1:78801003-78801022 None:intergenic 45.0%
TCTTCTGCACCTCAATATCC+AGG - chr3_1:78801012-78801031 Msa0378100:intron 45.0%
ATAGGTATAACACACGTCGG+TGG - chr3_1:78801254-78801273 Msa0378100:intron 45.0%
!!! TGATTTTTGGTTCGTGCTGC+AGG + chr3_1:78801864-78801883 None:intergenic 45.0%
AGTTAGAGACTGGAACGAGT+TGG - chr3_1:78801927-78801946 Msa0378100:intron 45.0%
GTTAGAGACTGGAACGAGTT+GGG - chr3_1:78801928-78801947 Msa0378100:intron 45.0%
TTAGAGACTGGAACGAGTTG+GGG - chr3_1:78801929-78801948 Msa0378100:intron 45.0%
! TGGGGTTGATCACAACTAGT+TGG + chr3_1:78802031-78802050 None:intergenic 45.0%
!! TGTTGGATTTGGTTTGGCCT+CGG + chr3_1:78802074-78802093 None:intergenic 45.0%
! GCTTCCTGTTGGATTTGGTT+TGG + chr3_1:78802080-78802099 None:intergenic 45.0%
! AGTTGGCTTCCTGTTGGATT+TGG + chr3_1:78802085-78802104 None:intergenic 45.0%
GGTGGCTTATGTATTCATGG+TGG + chr3_1:78802147-78802166 None:intergenic 45.0%
CAGGGTGGCTTATGTATTCA+TGG + chr3_1:78802150-78802169 None:intergenic 45.0%
GCTTCCATGTTGTTGAATCG+TGG - chr3_1:78802243-78802262 Msa0378100:intron 45.0%
! ACTGTTGTTCGCGTGGTTTT+GGG + chr3_1:78802287-78802306 None:intergenic 45.0%
! TACTGTTGTTCGCGTGGTTT+TGG + chr3_1:78802288-78802307 None:intergenic 45.0%
AACTGTTACTGTTGTTCGCG+TGG + chr3_1:78802294-78802313 None:intergenic 45.0%
TTCTGCAACACACACAACGA+CGG - chr3_1:78802312-78802331 Msa0378100:intron 45.0%
TGCACGAAGACAAGCAAATG+AGG + chr3_1:78803412-78803431 None:intergenic 45.0%
TGCAGTGGACAGTGTTAACA+TGG - chr3_1:78803732-78803751 Msa0378100:five_prime_UTR 45.0%
GGCCTTGCAAAGTTGTTACA+AGG - chr3_1:78803775-78803794 Msa0378100:five_prime_UTR 45.0%
TTGTTACAAGGCTCTTCCAG+TGG - chr3_1:78803787-78803806 Msa0378100:five_prime_UTR 45.0%
! AGAATCAATTTTCCGGCCAC+TGG + chr3_1:78803806-78803825 None:intergenic 45.0%
!! GAAGAAGGCTTTGAAGTGTG+TGG - chr3_1:78804040-78804059 Msa0378100:five_prime_UTR 45.0%
! CCAACTTTCGTTGGTTGCAA+TGG + chr3_1:78804239-78804258 None:intergenic 45.0%
CCATTGCAACCAACGAAAGT+TGG - chr3_1:78804236-78804255 Msa0378100:intron 45.0%
GATCTAAGCCCAACTTTCGT+TGG + chr3_1:78804248-78804267 None:intergenic 45.0%
!!! TTTTAATTTTAATTTATCTA+AGG + chr3_1:78801628-78801647 None:intergenic 5.0%
!! AATTAAAAAAAAAATACAAA+AGG - chr3_1:78801640-78801659 Msa0378100:intron 5.0%
!! AAATACAAAAAAAAAAAAAT+TGG - chr3_1:78803067-78803086 Msa0378100:intron 5.0%
GTTGTGTGGCCCAGATACAA+TGG - chr3_1:78799223-78799242 Msa0378100:three_prime_UTR 50.0%
AATGTGTGGCCCAGATGCAA+TGG - chr3_1:78799253-78799272 Msa0378100:three_prime_UTR 50.0%
TAAGACATGACGACAAGGGG+GGG + chr3_1:78799317-78799336 None:intergenic 50.0%
GGAGAATGGGAAAGTTGCTG+TGG - chr3_1:78799836-78799855 Msa0378100:intron 50.0%
!! TGAAGCGAGGCTTGCCATTT+TGG - chr3_1:78799872-78799891 Msa0378100:intron 50.0%
CCACCTTGCCATATAGCTTC+AGG + chr3_1:78799957-78799976 None:intergenic 50.0%
CCTGAAGCTATATGGCAAGG+TGG - chr3_1:78799954-78799973 Msa0378100:intron 50.0%
TGAGCAAACGGAGGATACGT+TGG + chr3_1:78800055-78800074 None:intergenic 50.0%
GTTGAGGACTTGAGCAGCAA+TGG - chr3_1:78800092-78800111 Msa0378100:intron 50.0%
AAGTACTCCCTCACCGATGT+CGG - chr3_1:78800122-78800141 Msa0378100:intron 50.0%
AGCTTTACCGACATCGGTGA+GGG + chr3_1:78800132-78800151 None:intergenic 50.0%
GCTCTTGTTCCCGATGATGA+TGG - chr3_1:78800149-78800168 Msa0378100:intron 50.0%
CAGGTCAGACCATCATCATC+GGG + chr3_1:78800161-78800180 None:intergenic 50.0%
TTCTCGAACGGTTCCACAGT+TGG + chr3_1:78800748-78800767 None:intergenic 50.0%
CATGTAGGGCAATGACATCC+CGG + chr3_1:78800845-78800864 None:intergenic 50.0%
GGATGTCATTGCCCTACATG+AGG - chr3_1:78800845-78800864 Msa0378100:intron 50.0%
GCCCTACATGAGGGAAATGT+TGG - chr3_1:78800855-78800874 Msa0378100:intron 50.0%
CACTTGAATCAGTTCCGGCT+GGG - chr3_1:78801282-78801301 Msa0378100:intron 50.0%
ACTTGAATCAGTTCCGGCTG+GGG - chr3_1:78801283-78801302 Msa0378100:intron 50.0%
ATGAAGATAGCATCCCCAGC+CGG + chr3_1:78801299-78801318 None:intergenic 50.0%
!! TGCTGCAGGTTTGTTGGGTT+GGG + chr3_1:78801850-78801869 None:intergenic 50.0%
! GTTCGTGCTGCAGGTTTGTT+GGG + chr3_1:78801855-78801874 None:intergenic 50.0%
!! GATTTGGTTTGGCCTCGGAT+TGG + chr3_1:78802069-78802088 None:intergenic 50.0%
GAGGCCAAACCAAATCCAAC+AGG - chr3_1:78802073-78802092 Msa0378100:intron 50.0%
! GTCATGGGTCTCGTTTGTTG+TGG + chr3_1:78802221-78802240 None:intergenic 50.0%
CGTGGAAGACATTGAAGCCA+TGG - chr3_1:78802261-78802280 Msa0378100:intron 50.0%
ATAGCTCAGACATGGGTTCG+TGG + chr3_1:78802380-78802399 None:intergenic 50.0%
!! TCTTTGTGAACCGGTGTTGC+CGG - chr3_1:78803823-78803842 Msa0378100:five_prime_UTR 50.0%
TTACTCTCATCGGTCTGCTC+CGG + chr3_1:78803845-78803864 None:intergenic 50.0%
CATTGTTGGCGGCTGACATA+TGG - chr3_1:78803876-78803895 Msa0378100:five_prime_UTR 50.0%
! GTCACCGTGCCATTGCATCT+GGG + chr3_1:78799265-78799284 None:intergenic 55.0%
! TGTCACCGTGCCATTGCATC+TGG + chr3_1:78799266-78799285 None:intergenic 55.0%
GCAAGCCTCGCTTCACTTTG+AGG + chr3_1:78799867-78799886 None:intergenic 55.0%
CTCTCCATAGTCCGTCCCAA+TGG - chr3_1:78800008-78800027 Msa0378100:intron 55.0%
TCCATAGTCCGTCCCAATGG+CGG - chr3_1:78800011-78800030 Msa0378100:intron 55.0%
GAGCTTTACCGACATCGGTG+AGG + chr3_1:78800133-78800152 None:intergenic 55.0%
GAACCGTTCGAGAAGCTGCA+CGG - chr3_1:78800754-78800773 Msa0378100:intron 55.0%
TCTCCGTGCAGCTTCTCGAA+CGG + chr3_1:78800760-78800779 None:intergenic 55.0%
GCACTTGAATCAGTTCCGGC+TGG - chr3_1:78801281-78801300 Msa0378100:intron 55.0%
! GGTTGGGTTGTGCTTGTGGT+GGG + chr3_1:78801834-78801853 None:intergenic 55.0%
!! GTTGGGTTGGGTTGTGCTTG+TGG + chr3_1:78801838-78801857 None:intergenic 55.0%
!! GTGCTGCAGGTTTGTTGGGT+TGG + chr3_1:78801851-78801870 None:intergenic 55.0%
GGTTCGTGCTGCAGGTTTGT+TGG + chr3_1:78801856-78801875 None:intergenic 55.0%
GTTGTGGTTCGATCTCAGGG+TGG + chr3_1:78802165-78802184 None:intergenic 55.0%
TACAAGGCTCTTCCAGTGGC+CGG - chr3_1:78803791-78803810 Msa0378100:five_prime_UTR 55.0%
GTGGCCCAGATGCAATGGCA+CGG - chr3_1:78799258-78799277 Msa0378100:three_prime_UTR 60.0%
TGACGACAAGGGGGGGTTGA+GGG + chr3_1:78799310-78799329 None:intergenic 60.0%
ATGACGACAAGGGGGGGTTG+AGG + chr3_1:78799311-78799330 None:intergenic 60.0%
!! TCCGCCATTGGGACGGACTA+TGG + chr3_1:78800015-78800034 None:intergenic 60.0%
ATAGTCCGTCCCAATGGCGG+AGG - chr3_1:78800014-78800033 Msa0378100:intron 60.0%
TCAGCGTCTCCTCCGCCATT+GGG + chr3_1:78800026-78800045 None:intergenic 60.0%
TTCAGCGTCTCCTCCGCCAT+TGG + chr3_1:78800027-78800046 None:intergenic 60.0%
AACGGCCATGCTCGCAGGTA+CGG + chr3_1:78800703-78800722 None:intergenic 60.0%
TCCACTGCGTCTCCCACCAA+CGG + chr3_1:78800721-78800740 None:intergenic 60.0%
CGCAGTGGAGGATCCAACTG+TGG - chr3_1:78800732-78800751 Msa0378100:intron 60.0%
GGGCAATGACATCCCGGACA+TGG + chr3_1:78800839-78800858 None:intergenic 60.0%
! GGGTTGGGTTGTGCTTGTGG+TGG + chr3_1:78801835-78801854 None:intergenic 60.0%
!!! GTTCGCGTGGTTTTGGGCCA+TGG + chr3_1:78802281-78802300 None:intergenic 60.0%
!! ATGGGTTCGTGGCACCGATC+CGG + chr3_1:78802369-78802388 None:intergenic 60.0%
GGGGTTGAGGGGTGGCACTT+TGG + chr3_1:78799298-78799317 None:intergenic 65.0%
GACGACAAGGGGGGGTTGAG+GGG + chr3_1:78799309-78799328 None:intergenic 65.0%
CGTCTCCTCCGCCATTGGGA+CGG + chr3_1:78800022-78800041 None:intergenic 65.0%
AGGACCCGTACCTGCGAGCA+TGG - chr3_1:78800695-78800714 Msa0378100:intron 65.0%
ACGGCCATGCTCGCAGGTAC+GGG + chr3_1:78800702-78800721 None:intergenic 65.0%
GTACCTGCGAGCATGGCCGT+TGG - chr3_1:78800702-78800721 Msa0378100:intron 65.0%
CTGCGAGCATGGCCGTTGGT+GGG - chr3_1:78800706-78800725 Msa0378100:intron 65.0%
! GTTGGTGGGAGACGCAGTGG+AGG - chr3_1:78800720-78800739 Msa0378100:intron 65.0%
TCGGTCTGCTCCGGCAACAC+CGG + chr3_1:78803836-78803855 None:intergenic 65.0%
GACAAGGGGGGGTTGAGGGG+TGG + chr3_1:78799306-78799325 None:intergenic 70.0%
CCACCAACGGCCATGCTCGC+AGG + chr3_1:78800708-78800727 None:intergenic 70.0%
CCTGCGAGCATGGCCGTTGG+TGG - chr3_1:78800705-78800724 Msa0378100:intron 70.0%
! GCCGTTGGTGGGAGACGCAG+TGG - chr3_1:78800717-78800736 Msa0378100:intron 70.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 78799083 78804373 78799083 ID=Msa0378100;Name=Msa0378100
chr3_1 mRNA 78799083 78804373 78799083 ID=Msa0378100-mRNA-1;Parent=Msa0378100;Name=Msa0378100-mRNA-1;_AED=0.26;_eAED=0.26;_QI=605|1|1|1|0.75|0.6|5|337|358
chr3_1 exon 78799083 78799719 78799083 ID=Msa0378100-mRNA-1:exon:19144;Parent=Msa0378100-mRNA-1
chr3_1 exon 78802134 78802198 78802134 ID=Msa0378100-mRNA-1:exon:19143;Parent=Msa0378100-mRNA-1
chr3_1 exon 78802423 78802759 78802423 ID=Msa0378100-mRNA-1:exon:19142;Parent=Msa0378100-mRNA-1
chr3_1 exon 78803248 78804135 78803248 ID=Msa0378100-mRNA-1:exon:19141;Parent=Msa0378100-mRNA-1
chr3_1 exon 78804282 78804373 78804282 ID=Msa0378100-mRNA-1:exon:19140;Parent=Msa0378100-mRNA-1
chr3_1 five_prime_UTR 78804282 78804373 78804282 ID=Msa0378100-mRNA-1:five_prime_utr;Parent=Msa0378100-mRNA-1
chr3_1 five_prime_UTR 78803623 78804135 78803623 ID=Msa0378100-mRNA-1:five_prime_utr;Parent=Msa0378100-mRNA-1
chr3_1 CDS 78803248 78803622 78803248 ID=Msa0378100-mRNA-1:cds;Parent=Msa0378100-mRNA-1
chr3_1 CDS 78802423 78802759 78802423 ID=Msa0378100-mRNA-1:cds;Parent=Msa0378100-mRNA-1
chr3_1 CDS 78802134 78802198 78802134 ID=Msa0378100-mRNA-1:cds;Parent=Msa0378100-mRNA-1
chr3_1 CDS 78799420 78799719 78799420 ID=Msa0378100-mRNA-1:cds;Parent=Msa0378100-mRNA-1
chr3_1 three_prime_UTR 78799083 78799419 78799083 ID=Msa0378100-mRNA-1:three_prime_utr;Parent=Msa0378100-mRNA-1
Gene Sequence

>Msa0378100

ATGGAGAATGGGAAAGTTGCTGTGGTAAAGCCTCAAAGTGAAGCGAGGCTTGCCATTTTGGAACTTGCACACATTATGAGTGTTCCTACGTCCCTTAATGCTGTTCTCAAAATGAAAGTACCTGAAGCTATATGGCAAGGTGGAAAGAACACTCCACTCTCTGCCTCTCAAATTCTCTCCATAGTCCGTCCCAATGGCGGAGGAGACGCTGAAAATCTCCAACGTATCCTCCGTTTGCTCACCACTTATACTATTTTTGTTGAGGACTTGAGCAGCAATGGTGAAAGGAAGTACTCCCTCACCGATGTCGGTAAAGCTCTTGTTCCCGATGATGATGGTCTGACCTGTGCATCATTTTTCGTCCAGCACCATCAGGACCCGTACCTGCGAGCATGGCCGTTGGTGGGAGACGCAGTGGAGGATCCAACTGTGGAACCGTTCGAGAAGCTGCACGGAGAAGCAGCATATGCATATTGCACAAAGGGACCAGAAGAAATGAGTTTGTTTTATGCTTCCATGTCCGGGATGTCATTGCCCTACATGAGGGAAATGTTGGAGAATTATGATGGCTTCAAAGGTGTGGAGACTCTAGTTGATGTTGGTGGCAATTCTGGTGTGAGTCTCAACATGATTATGAACAAATATCCAAACATACTCAAAGGCATCAATTTTGATCTTCCCGATATGATCTCTTCTGCACCTCAATATCCAGGTATAACACACGTCGGTGGTGATGCACTTGAATCAGTTCCGGCTGGGGATGCTATCTTCATTAAGTGGACAGTGTTAACATGGACAGATGAAGAATTCAAGAAGGCCTTGCAAAGTTGTTACAAGGCTCTTCCAGTGGCCGGAAAATTGATTCTTTGTGAACCGGTGTTGCCGGAGCAGACCGATGAGAGTAAAAGAACAAGAGCATTGTTGGCGGCTGACATATGGATAATGACAATGTATAGAACTAAGGGAAAACACAGAACCGAAGAAGAATTCAAACAACTTGGCATTTCTGCTGGTTTTAAAAGTTTTCGTGCCTTCCATATTGATCCTTATTTGCCTGTACTTGAATTTCATAAATGA
Protein sequence

>Msa0378100

MENGKVAVVKPQSEARLAILELAHIMSVPTSLNAVLKMKVPEAIWQGGKNTPLSASQILSIVRPNGGGDAENLQRILRLLTTYTIFVEDLSSNGERKYSLTDVGKALVPDDDGLTCASFFVQHHQDPYLRAWPLVGDAVEDPTVEPFEKLHGEAAYAYCTKGPEEMSLFYASMSGMSLPYMREMLENYDGFKGVETLVDVGGNSGVSLNMIMNKYPNILKGINFDLPDMISSAPQYPGITHVGGDALESVPAGDAIFIKWTVLTWTDEEFKKALQSCYKALPVAGKLILCEPVLPEQTDESKRTRALLAADIWIMTMYRTKGKHRTEEEFKQLGISAGFKSFRAFHIDPYLPVLEFHK*