Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0378110 | CAB65279.1 | 99.441 | 358 | 2 | 0 | 1 | 358 | 1 | 358 | 0.0 | 740 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0378110 | sp|I1M2U5|NAMT1_SOYBN | 61.960 | 347 | 131 | 1 | 12 | 358 | 10 | 355 | 2.26e-164 | 466 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0378110 | Q9SBS0 | 99.441 | 358 | 2 | 0 | 1 | 358 | 1 | 358 | 0.0 | 740 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0189520 | Msa0378110 | -0.825161 | 5.451587e-54 | -8.615850e-47 |
| Msa0377900 | Msa0378110 | 0.974847 | 6.974625e-139 | -8.615850e-47 |
| Msa0378100 | Msa0378110 | 0.826930 | 2.069570e-54 | -8.615850e-47 |
| Msa0378110 | Msa0419640 | 0.816061 | 6.713321e-52 | -8.615850e-47 |
| Msa0378110 | Msa0473820 | 0.866461 | 2.803584e-65 | -8.615850e-47 |
| Msa0378110 | Msa0473830 | 0.959973 | 4.908931e-118 | -8.615850e-47 |
| Msa0378110 | Msa0518060 | 0.828714 | 7.711135e-55 | -8.615850e-47 |
| Msa0378110 | Msa0518070 | 0.957605 | 1.809960e-115 | -8.615850e-47 |
| Msa0378110 | Msa0565620 | 0.819991 | 8.683762e-53 | -8.615850e-47 |
| Msa0378110 | Msa0618200 | 0.811375 | 7.225277e-51 | -8.615850e-47 |
| Msa0378110 | Msa0621080 | 0.965677 | 6.459447e-125 | -8.615850e-47 |
| Msa0378110 | Msa0621090 | 0.834672 | 2.617169e-56 | -8.615850e-47 |
| Msa0378110 | Msa0657460 | 0.803550 | 3.304656e-49 | -8.615850e-47 |
| Msa0378110 | Msa0661710 | -0.822378 | 2.446666e-53 | -8.615850e-47 |
| Msa0378110 | Msa1253800 | -0.806068 | 9.844920e-50 | -8.615850e-47 |
| Msa0378110 | Msa1366650 | -0.816938 | 4.272155e-52 | -8.615850e-47 |
| Msa0378110 | Msa1412930 | 0.815429 | 9.286777e-52 | -8.615850e-47 |
| Msa0271360 | Msa0378110 | -0.817326 | 3.494430e-52 | -8.615850e-47 |
| Msa0309880 | Msa0378110 | -0.816160 | 6.382792e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0378110 | MtrunA17_Chr3g0130061 | 95.531 | 358 | 16 | 0 | 1 | 358 | 1 | 358 | 0.0 | 714 |
| Msa0378110 | MtrunA17_Chr3g0130011 | 86.592 | 358 | 48 | 0 | 1 | 358 | 1 | 358 | 0.0 | 644 |
| Msa0378110 | MtrunA17_Chr2g0314271 | 59.312 | 349 | 141 | 1 | 10 | 358 | 7 | 354 | 4.81e-162 | 457 |
| Msa0378110 | MtrunA17_Chr3g0128011 | 37.960 | 353 | 204 | 8 | 14 | 358 | 72 | 417 | 1.40e-69 | 223 |
| Msa0378110 | MtrunA17_Chr5g0448091 | 37.110 | 353 | 208 | 9 | 14 | 358 | 17 | 363 | 4.68e-66 | 213 |
| Msa0378110 | MtrunA17_Chr7g0276411 | 34.493 | 345 | 217 | 5 | 20 | 358 | 21 | 362 | 6.69e-66 | 212 |
| Msa0378110 | MtrunA17_Chr8g0367441 | 36.963 | 349 | 203 | 8 | 20 | 358 | 36 | 377 | 1.06e-65 | 212 |
| Msa0378110 | MtrunA17_Chr8g0367491 | 34.483 | 348 | 219 | 5 | 17 | 358 | 32 | 376 | 1.39e-63 | 207 |
| Msa0378110 | MtrunA17_Chr7g0276401 | 33.515 | 367 | 232 | 6 | 1 | 358 | 12 | 375 | 6.85e-62 | 202 |
| Msa0378110 | MtrunA17_Chr8g0367451 | 35.474 | 327 | 200 | 7 | 20 | 339 | 35 | 357 | 3.68e-61 | 200 |
| Msa0378110 | MtrunA17_Chr1g0200491 | 36.170 | 376 | 209 | 12 | 2 | 358 | 9 | 372 | 2.81e-60 | 198 |
| Msa0378110 | MtrunA17_Chr7g0218131 | 36.901 | 355 | 204 | 10 | 2 | 344 | 9 | 355 | 1.16e-59 | 196 |
| Msa0378110 | MtrunA17_Chr7g0218271 | 35.165 | 364 | 213 | 9 | 2 | 347 | 9 | 367 | 2.88e-59 | 196 |
| Msa0378110 | MtrunA17_Chr7g0218181 | 36.313 | 358 | 201 | 11 | 3 | 344 | 6 | 352 | 5.38e-59 | 194 |
| Msa0378110 | MtrunA17_Chr7g0218211 | 35.694 | 353 | 211 | 8 | 2 | 344 | 8 | 354 | 9.45e-59 | 194 |
| Msa0378110 | MtrunA17_Chr2g0307521 | 34.097 | 349 | 217 | 8 | 3 | 344 | 6 | 348 | 1.76e-57 | 191 |
| Msa0378110 | MtrunA17_Chr1g0163611 | 35.890 | 365 | 210 | 12 | 9 | 358 | 15 | 370 | 3.09e-57 | 190 |
| Msa0378110 | MtrunA17_Chr8g0367501 | 32.471 | 348 | 224 | 6 | 14 | 355 | 16 | 358 | 4.90e-57 | 191 |
| Msa0378110 | MtrunA17_Chr7g0218301 | 38.811 | 286 | 159 | 6 | 73 | 347 | 87 | 367 | 6.65e-57 | 189 |
| Msa0378110 | MtrunA17_Chr1g0163601 | 35.180 | 361 | 218 | 9 | 9 | 358 | 15 | 370 | 4.77e-56 | 187 |
| Msa0378110 | MtrunA17_Chr1g0163621 | 38.929 | 280 | 160 | 6 | 70 | 343 | 93 | 367 | 2.20e-55 | 186 |
| Msa0378110 | MtrunA17_Chr7g0218261 | 35.556 | 360 | 211 | 11 | 2 | 347 | 8 | 360 | 2.38e-55 | 185 |
| Msa0378110 | MtrunA17_Chr3g0085201 | 38.182 | 275 | 162 | 3 | 73 | 343 | 71 | 341 | 3.41e-55 | 184 |
| Msa0378110 | MtrunA17_Chr8g0367381 | 34.713 | 314 | 177 | 6 | 20 | 327 | 36 | 327 | 1.88e-54 | 181 |
| Msa0378110 | MtrunA17_Chr8g0345851 | 35.985 | 264 | 166 | 3 | 95 | 358 | 30 | 290 | 9.70e-54 | 179 |
| Msa0378110 | MtrunA17_Chr3g0085211 | 37.113 | 291 | 174 | 4 | 73 | 358 | 84 | 370 | 1.08e-51 | 176 |
| Msa0378110 | MtrunA17_Chr4g0022021 | 32.113 | 355 | 228 | 9 | 8 | 355 | 17 | 365 | 8.03e-48 | 166 |
| Msa0378110 | MtrunA17_Chr4g0021981 | 31.742 | 356 | 228 | 10 | 8 | 355 | 17 | 365 | 4.02e-45 | 158 |
| Msa0378110 | MtrunA17_Chr6g0482291 | 41.398 | 186 | 99 | 3 | 173 | 358 | 1 | 176 | 3.69e-40 | 139 |
| Msa0378110 | MtrunA17_Chr3g0121301 | 29.773 | 309 | 202 | 8 | 36 | 339 | 44 | 342 | 7.27e-36 | 134 |
| Msa0378110 | MtrunA17_Chr5g0432251 | 27.812 | 320 | 217 | 7 | 31 | 343 | 32 | 344 | 4.77e-34 | 129 |
| Msa0378110 | MtrunA17_Chr7g0223241 | 28.529 | 340 | 211 | 10 | 29 | 356 | 29 | 348 | 1.04e-33 | 127 |
| Msa0378110 | MtrunA17_Chr5g0432301 | 27.507 | 349 | 235 | 10 | 2 | 343 | 8 | 345 | 3.56e-33 | 126 |
| Msa0378110 | MtrunA17_Chr4g0040621 | 28.367 | 349 | 227 | 11 | 12 | 346 | 18 | 357 | 4.00e-31 | 121 |
| Msa0378110 | MtrunA17_Chr5g0432241 | 27.635 | 351 | 232 | 11 | 2 | 343 | 8 | 345 | 4.13e-31 | 120 |
| Msa0378110 | MtrunA17_Chr7g0223231 | 28.446 | 341 | 210 | 11 | 29 | 356 | 29 | 348 | 7.62e-31 | 120 |
| Msa0378110 | MtrunA17_Chr7g0219161 | 28.972 | 321 | 210 | 10 | 31 | 343 | 32 | 342 | 3.00e-30 | 118 |
| Msa0378110 | MtrunA17_Chr1g0188391 | 25.893 | 336 | 229 | 9 | 31 | 355 | 32 | 358 | 5.43e-30 | 117 |
| Msa0378110 | MtrunA17_Chr4g0046531 | 27.301 | 326 | 216 | 8 | 29 | 345 | 392 | 705 | 1.68e-29 | 119 |
| Msa0378110 | MtrunA17_Chr4g0046531 | 29.787 | 329 | 204 | 12 | 29 | 345 | 30 | 343 | 3.21e-29 | 119 |
| Msa0378110 | MtrunA17_Chr5g0432211 | 26.437 | 348 | 226 | 11 | 2 | 343 | 7 | 330 | 1.28e-27 | 111 |
| Msa0378110 | MtrunA17_Chr7g0219141 | 28.829 | 333 | 206 | 11 | 31 | 350 | 32 | 346 | 1.32e-27 | 111 |
| Msa0378110 | MtrunA17_Chr4g0014561 | 28.116 | 345 | 228 | 10 | 24 | 355 | 23 | 360 | 1.77e-27 | 110 |
| Msa0378110 | MtrunA17_Chr1g0188371 | 27.950 | 322 | 209 | 10 | 29 | 338 | 30 | 340 | 2.64e-27 | 110 |
| Msa0378110 | MtrunA17_Chr4g0014681 | 27.826 | 345 | 229 | 10 | 24 | 355 | 23 | 360 | 1.68e-26 | 108 |
| Msa0378110 | MtrunA17_Chr4g0046361 | 26.347 | 334 | 230 | 10 | 31 | 355 | 32 | 358 | 1.23e-25 | 105 |
| Msa0378110 | MtrunA17_Chr8g0367401 | 40.602 | 133 | 70 | 2 | 150 | 274 | 2 | 133 | 2.87e-25 | 99.4 |
| Msa0378110 | MtrunA17_Chr5g0432261 | 27.273 | 319 | 192 | 12 | 31 | 343 | 28 | 312 | 3.89e-25 | 103 |
| Msa0378110 | MtrunA17_Chr4g0014641 | 27.181 | 298 | 201 | 8 | 31 | 317 | 32 | 324 | 1.65e-23 | 100 |
| Msa0378110 | MtrunA17_Chr4g0046341 | 26.706 | 337 | 228 | 9 | 31 | 355 | 32 | 361 | 5.97e-22 | 95.5 |
| Msa0378110 | MtrunA17_Chr1g0170941 | 55.844 | 77 | 33 | 1 | 181 | 257 | 1 | 76 | 1.75e-20 | 84.3 |
| Msa0378110 | MtrunA17_Chr4g0014661 | 25.658 | 304 | 212 | 9 | 24 | 319 | 23 | 320 | 5.60e-20 | 89.7 |
| Msa0378110 | MtrunA17_Chr8g0367461 | 39.286 | 112 | 67 | 1 | 247 | 358 | 2 | 112 | 2.97e-19 | 82.4 |
| Msa0378110 | MtrunA17_Chr4g0014591 | 25.658 | 304 | 212 | 9 | 24 | 319 | 23 | 320 | 1.15e-17 | 83.2 |
| Msa0378110 | MtrunA17_Chr7g0219171 | 30.827 | 133 | 86 | 2 | 227 | 356 | 117 | 246 | 4.83e-17 | 79.7 |
| Msa0378110 | MtrunA17_Chr8g0367471 | 55.738 | 61 | 26 | 1 | 181 | 241 | 9 | 68 | 8.62e-17 | 75.1 |
| Msa0378110 | MtrunA17_Chr8g0367421 | 32.331 | 133 | 64 | 2 | 150 | 274 | 2 | 116 | 4.49e-15 | 71.2 |
| Msa0378110 | MtrunA17_Chr8g0367391 | 37.383 | 107 | 60 | 3 | 255 | 358 | 32 | 134 | 2.47e-14 | 69.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0378110 | AT3G53140.1 | 57.835 | 351 | 144 | 2 | 12 | 358 | 9 | 359 | 8.23e-153 | 434 |
| Msa0378110 | AT5G54160.1 | 40.303 | 330 | 188 | 6 | 14 | 339 | 18 | 342 | 8.18e-72 | 228 |
| Msa0378110 | AT1G33030.1 | 34.111 | 343 | 217 | 6 | 23 | 358 | 10 | 350 | 1.12e-59 | 196 |
| Msa0378110 | AT1G51990.1 | 35.495 | 293 | 180 | 5 | 53 | 339 | 54 | 343 | 1.62e-56 | 188 |
| Msa0378110 | AT1G51990.2 | 35.836 | 293 | 179 | 5 | 53 | 339 | 54 | 343 | 5.81e-56 | 187 |
| Msa0378110 | AT1G77520.1 | 32.286 | 350 | 220 | 8 | 22 | 358 | 36 | 381 | 1.33e-54 | 184 |
| Msa0378110 | AT1G77530.1 | 35.227 | 352 | 207 | 10 | 22 | 358 | 36 | 381 | 1.59e-47 | 165 |
| Msa0378110 | AT5G53810.1 | 32.945 | 343 | 214 | 8 | 29 | 358 | 39 | 378 | 1.23e-43 | 155 |
| Msa0378110 | AT1G63140.2 | 32.184 | 348 | 223 | 6 | 22 | 358 | 36 | 381 | 2.29e-43 | 154 |
| Msa0378110 | AT1G63140.4 | 32.092 | 349 | 222 | 6 | 22 | 358 | 56 | 401 | 3.50e-43 | 154 |
| Msa0378110 | AT1G21100.1 | 33.056 | 360 | 228 | 9 | 8 | 358 | 18 | 373 | 4.36e-43 | 153 |
| Msa0378110 | AT1G21110.1 | 34.018 | 341 | 212 | 9 | 8 | 339 | 18 | 354 | 1.83e-41 | 149 |
| Msa0378110 | AT1G21120.1 | 33.056 | 360 | 228 | 9 | 8 | 358 | 18 | 373 | 2.19e-41 | 149 |
| Msa0378110 | AT5G37170.2 | 39.691 | 194 | 113 | 4 | 167 | 358 | 43 | 234 | 6.48e-41 | 144 |
| Msa0378110 | AT1G21130.1 | 32.500 | 360 | 230 | 9 | 8 | 358 | 18 | 373 | 6.67e-41 | 147 |
| Msa0378110 | AT1G21120.2 | 33.333 | 360 | 227 | 9 | 8 | 358 | 66 | 421 | 1.15e-40 | 148 |
| Msa0378110 | AT5G37170.3 | 40.426 | 188 | 108 | 4 | 173 | 358 | 1 | 186 | 1.51e-40 | 141 |
| Msa0378110 | AT1G62900.1 | 41.361 | 191 | 111 | 1 | 168 | 358 | 16 | 205 | 6.78e-40 | 140 |
| Msa0378110 | AT5G37170.1 | 39.691 | 194 | 113 | 4 | 167 | 358 | 143 | 334 | 1.12e-39 | 143 |
| Msa0378110 | AT1G76790.1 | 31.339 | 351 | 222 | 8 | 12 | 347 | 12 | 358 | 1.18e-38 | 141 |
| Msa0378110 | AT4G35160.1 | 29.863 | 365 | 231 | 10 | 1 | 348 | 15 | 371 | 2.13e-38 | 141 |
| Msa0378110 | AT4G35150.1 | 27.019 | 359 | 206 | 9 | 1 | 348 | 1 | 314 | 8.55e-33 | 125 |
| Msa0378110 | AT1G33030.2 | 32.377 | 244 | 157 | 5 | 23 | 259 | 10 | 252 | 4.53e-32 | 121 |
| Msa0378110 | AT1G33030.3 | 31.873 | 251 | 163 | 5 | 23 | 266 | 10 | 259 | 7.50e-32 | 121 |
| Msa0378110 | AT1G21130.2 | 32.692 | 260 | 164 | 7 | 8 | 259 | 18 | 274 | 3.47e-21 | 92.8 |
| Msa0378110 | AT1G63140.1 | 31.200 | 250 | 157 | 6 | 22 | 259 | 56 | 302 | 9.31e-21 | 91.7 |
| Msa0378110 | AT1G77530.2 | 32.751 | 229 | 139 | 7 | 22 | 238 | 36 | 261 | 3.38e-15 | 75.5 |
| Msa0378110 | AT1G63140.3 | 29.333 | 225 | 144 | 6 | 22 | 234 | 56 | 277 | 4.36e-12 | 66.2 |
Find 112 sgRNAs with CRISPR-Local
Find 214 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTATATATAAGTTCTATTT+TGG | 0.164255 | 3_1:-78808679 | Msa0378110:three_prime_UTR |
| TGAAGCGAGGCTTGCCATTT+TGG | 0.196493 | 3_1:-78811855 | Msa0378110:CDS |
| GTGTTGTATTTGAACTTTAT+TGG | 0.241000 | 3_1:-78808745 | Msa0378110:three_prime_UTR |
| AGGAATCGATACTAATTAAT+TGG | 0.267366 | 3_1:-78808620 | Msa0378110:three_prime_UTR |
| GTTGATGTTGGTGGAAATTC+TGG | 0.276999 | 3_1:-78810792 | Msa0378110:CDS |
| TGAGATGGGGTAAAATAATT+AGG | 0.292059 | 3_1:-78808640 | Msa0378110:three_prime_UTR |
| TCCGCCGTTGGGACGAACTA+TGG | 0.336990 | 3_1:+78811715 | None:intergenic |
| AAAACAAATACTCCACATTA+AGG | 0.337928 | 3_1:-78812226 | Msa0378110:five_prime_UTR |
| AATTCTAGAACAGGAAAATA+AGG | 0.340914 | 3_1:+78808906 | None:intergenic |
| GATGTATTTGATTTCAATCA+TGG | 0.370473 | 3_1:-78812307 | Msa0378110:five_prime_UTR |
| TGAAAGTACCTGAAGCTATA+TGG | 0.371128 | 3_1:-78811781 | Msa0378110:CDS |
| TGGAAATTTATTCATAGTAT+AGG | 0.375529 | 3_1:+78808589 | None:intergenic |
| CCACCTTGCCATATAGCTTC+AGG | 0.378883 | 3_1:+78811773 | None:intergenic |
| TTGATGCCTTTGAGTATGTT+TGG | 0.379016 | 3_1:+78810738 | None:intergenic |
| AACAAATTAGCAAACAATAA+TGG | 0.380919 | 3_1:-78811912 | Msa0378110:exon |
| GCAAGCCTCGCTTCACTTTG+AGG | 0.394145 | 3_1:+78811863 | None:intergenic |
| CGCTTGAATCAGTTCCGGCT+GGG | 0.404048 | 3_1:-78810420 | Msa0378110:CDS |
| GAACTGCTACAAGGCTCTTC+CGG | 0.408093 | 3_1:-78809126 | Msa0378110:CDS |
| ATACGTGCTCCAGCACTATC+AGG | 0.414549 | 3_1:-78811540 | Msa0378110:intron |
| TGATGATTAATGTAATATAT+TGG | 0.425215 | 3_1:+78812091 | None:intergenic |
| CATTTCTGAAATTCTAGAAC+AGG | 0.425960 | 3_1:+78808897 | None:intergenic |
| TAGCAAACAATAATGGAGAA+TGG | 0.439987 | 3_1:-78811905 | Msa0378110:exon |
| TCAGCGTCTCCTCCGCCGTT+GGG | 0.442327 | 3_1:+78811704 | None:intergenic |
| GGTGCAGAAGATATCATATC+AGG | 0.442330 | 3_1:+78810705 | None:intergenic |
| TAAAACAAACTCATTTCATC+TGG | 0.446989 | 3_1:+78810897 | None:intergenic |
| AATGACAATGTATAGAACTA+AGG | 0.447407 | 3_1:-78809009 | Msa0378110:CDS |
| AAGTTGTTTGAATTGTTCTT+CGG | 0.452222 | 3_1:+78808974 | None:intergenic |
| TTAATTAAACCTGATAGTGC+TGG | 0.454163 | 3_1:+78811531 | None:intergenic |
| AGCAAACAATAATGGAGAAT+GGG | 0.456384 | 3_1:-78811904 | Msa0378110:exon |
| AAACAACTTGGCATTTCTAC+TGG | 0.457428 | 3_1:-78808960 | Msa0378110:CDS |
| TTCAGCGTCTCCTCCGCCGT+TGG | 0.458395 | 3_1:+78811703 | None:intergenic |
| GCGCTTGAATCAGTTCCGGC+TGG | 0.463667 | 3_1:-78810421 | Msa0378110:CDS |
| AATGTGTGCAAGTTCCAAAA+TGG | 0.463723 | 3_1:+78811841 | None:intergenic |
| ACGGCCATGCTCGCAGGTAC+TGG | 0.467387 | 3_1:+78811006 | None:intergenic |
| AGAATTTGAGAGGCAGAGAG+TGG | 0.478385 | 3_1:+78811740 | None:intergenic |
| TGCGGTGTTTATTATGTGAT+GGG | 0.478958 | 3_1:-78808852 | Msa0378110:three_prime_UTR |
| CTCCAACATTTCATTCATGT+GGG | 0.482731 | 3_1:+78810848 | None:intergenic |
| CTACCAACGGCCATGCTCGC+AGG | 0.494673 | 3_1:+78811000 | None:intergenic |
| TCTTGTTCTTTGACTCTCAT+CGG | 0.494808 | 3_1:+78809058 | None:intergenic |
| TAGGATAGACCATCATCATC+AGG | 0.497441 | 3_1:+78811569 | None:intergenic |
| CTTGACTATTTACCTTAATG+TGG | 0.507909 | 3_1:+78812214 | None:intergenic |
| TGACTCTCATCGGTCAGCTC+CGG | 0.508920 | 3_1:+78809068 | None:intergenic |
| TAGCACAAGTGGTGAGCAAA+CGG | 0.509256 | 3_1:+78811663 | None:intergenic |
| TGATGCGCTTGAATCAGTTC+CGG | 0.509380 | 3_1:-78810425 | Msa0378110:CDS |
| GCTGAGGACTTGAGCAGCAA+TGG | 0.515616 | 3_1:-78811635 | Msa0378110:CDS |
| AAATGAAAATTTATGATGAG+TGG | 0.518158 | 3_1:+78808569 | None:intergenic |
| TCTCCAACATTTCATTCATG+TGG | 0.521489 | 3_1:+78810847 | None:intergenic |
| CTCTCCATAGTTCGTCCCAA+CGG | 0.523097 | 3_1:-78811719 | Msa0378110:CDS |
| TCTTCTGCACCTCAATTGCC+AGG | 0.528773 | 3_1:-78810693 | Msa0378110:intron |
| AAGAACAAGAGCATTGTTGT+CGG | 0.531999 | 3_1:-78809045 | Msa0378110:CDS |
| AGAACAAGAGCATTGTTGTC+GGG | 0.535407 | 3_1:-78809044 | Msa0378110:CDS |
| TGTTTGTGAGCCGGTGTCAC+CGG | 0.537744 | 3_1:-78809087 | Msa0378110:CDS |
| GAGAAGTATGATGGCTTCAA+AGG | 0.539698 | 3_1:-78810828 | Msa0378110:CDS |
| ACTTGAGCAGCAATGGCAAA+AGG | 0.541451 | 3_1:-78811628 | Msa0378110:CDS |
| GTGCGGTGTTTATTATGTGA+TGG | 0.541821 | 3_1:-78808853 | Msa0378110:three_prime_UTR |
| TGGGGATGCTATCTTTACTA+AGG | 0.549158 | 3_1:-78810401 | Msa0378110:intron |
| GCCCCACATGAATGAAATGT+TGG | 0.550679 | 3_1:-78810850 | Msa0378110:CDS |
| ATGACAATGTATAGAACTAA+GGG | 0.551447 | 3_1:-78809008 | Msa0378110:CDS |
| ATAAACACCGCACACTTCAA+AGG | 0.551977 | 3_1:+78808863 | None:intergenic |
| TGAAACAATCTAAAGGAAGC+AGG | 0.552360 | 3_1:+78808812 | None:intergenic |
| CTGCGAGCATGGCCGTTGGT+AGG | 0.552621 | 3_1:-78810999 | Msa0378110:CDS |
| CCTTTAGATTGTTTCAACGC+TGG | 0.557668 | 3_1:-78808805 | Msa0378110:three_prime_UTR |
| CCAGCGTTGAAACAATCTAA+AGG | 0.557722 | 3_1:+78808805 | None:intergenic |
| GCTCTTGTTCCTGATGATGA+TGG | 0.560343 | 3_1:-78811578 | Msa0378110:CDS |
| GCTTGAATCAGTTCCGGCTG+GGG | 0.562608 | 3_1:-78810419 | Msa0378110:CDS |
| ATAGTTCGTCCCAACGGCGG+AGG | 0.566298 | 3_1:-78811713 | Msa0378110:CDS |
| CTGGAGCACGTATGTTGCAT+AGG | 0.569843 | 3_1:+78811550 | None:intergenic |
| AACAAGAGCTTTACCGATGT+CGG | 0.570815 | 3_1:+78811592 | None:intergenic |
| TACAATGCTTTCATTTGCAT+AGG | 0.574712 | 3_1:+78812376 | None:intergenic |
| AGGACCAGTACCTGCGAGCA+TGG | 0.575828 | 3_1:-78811010 | Msa0378110:CDS |
| TACAAGGCTCTTCCGGTGAA+CGG | 0.576438 | 3_1:-78809119 | Msa0378110:CDS |
| AGCTTTACCGATGTCGGTGA+GGG | 0.576491 | 3_1:+78811598 | None:intergenic |
| AAGTACTCCCTCACCGACAT+CGG | 0.580829 | 3_1:-78811605 | Msa0378110:CDS |
| AAAATTGATTGTTTGTGAGC+CGG | 0.585030 | 3_1:-78809096 | Msa0378110:CDS |
| TGCAGTGGTGGATGCATCTG+TGG | 0.585765 | 3_1:-78810973 | Msa0378110:CDS |
| GGTCTTGCAGAACTGCTACA+AGG | 0.589457 | 3_1:-78809135 | Msa0378110:CDS |
| GTAAAGATAGCATCCCCAGC+CGG | 0.589819 | 3_1:+78810406 | None:intergenic |
| TCCAACATTTCATTCATGTG+GGG | 0.590027 | 3_1:+78810849 | None:intergenic |
| TGCAGTGGACAATGTTAACA+TGG | 0.590972 | 3_1:-78809178 | Msa0378110:intron |
| GTGGAGACTCTAGTTGATGT+TGG | 0.592031 | 3_1:-78810804 | Msa0378110:CDS |
| TCTCCGTGTAGCTTCTCGAA+CGG | 0.592087 | 3_1:+78810948 | None:intergenic |
| GAAATGTTGGAGAAGTATGA+TGG | 0.592269 | 3_1:-78810837 | Msa0378110:CDS |
| GTACCTGAAGCTATATGGCA+AGG | 0.593518 | 3_1:-78811776 | Msa0378110:CDS |
| AAAATAAGGATCAATGTGGA+AGG | 0.596257 | 3_1:+78808920 | None:intergenic |
| TTCGAGAAGCTACACGGAGA+AGG | 0.597251 | 3_1:-78810945 | Msa0378110:CDS |
| AAATATCCAAACATACTCAA+AGG | 0.599530 | 3_1:-78810744 | Msa0378110:CDS |
| GAAGAACAATTCAAACAACT+TGG | 0.603168 | 3_1:-78808972 | Msa0378110:CDS |
| TCGACACATCTTGTATTGAG+AGG | 0.606385 | 3_1:-78808716 | Msa0378110:three_prime_UTR |
| TCGGTCAGCTCCGGTGACAC+CGG | 0.614991 | 3_1:+78809077 | None:intergenic |
| GAGCTTTACCGATGTCGGTG+AGG | 0.617425 | 3_1:+78811597 | None:intergenic |
| GTATGATGGCTTCAAAGGTG+TGG | 0.619248 | 3_1:-78810823 | Msa0378110:CDS |
| TCCATAGTTCGTCCCAACGG+CGG | 0.625900 | 3_1:-78811716 | Msa0378110:CDS |
| GGAGAATGGGAAAGTTCATG+TGG | 0.633634 | 3_1:-78811891 | Msa0378110:CDS |
| GACAGATGAAGAATGCAAGA+AGG | 0.634205 | 3_1:-78809156 | Msa0378110:CDS |
| GAAGAAGCCTTTGAAGTGTG+CGG | 0.636821 | 3_1:-78808870 | Msa0378110:three_prime_UTR |
| AACTATGGAGAGAATTTGAG+AGG | 0.637733 | 3_1:+78811730 | None:intergenic |
| GAGACTCTAGTTGATGTTGG+TGG | 0.642194 | 3_1:-78810801 | Msa0378110:CDS |
| TCTCAATACAAGATGTGTCG+AGG | 0.647681 | 3_1:+78808718 | None:intergenic |
| GGGCATTGACAATCCAGACA+TGG | 0.658458 | 3_1:+78810869 | None:intergenic |
| GCGGTGTTTATTATGTGATG+GGG | 0.658648 | 3_1:-78808851 | Msa0378110:three_prime_UTR |
| GTTGGTAGGAGATGCAGTGG+TGG | 0.659948 | 3_1:-78810985 | Msa0378110:CDS |
| CAGGAAAATAAGGATCAATG+TGG | 0.660747 | 3_1:+78808916 | None:intergenic |
| GCCGTTGGTAGGAGATGCAG+TGG | 0.663196 | 3_1:-78810988 | Msa0378110:CDS |
| GAACCGTTCGAGAAGCTACA+CGG | 0.665044 | 3_1:-78810951 | Msa0378110:CDS |
| ACCACTGCATCTCCTACCAA+CGG | 0.666516 | 3_1:+78810987 | None:intergenic |
| GTACCTGCGAGCATGGCCGT+TGG | 0.674564 | 3_1:-78811003 | Msa0378110:CDS |
| CACAAGTGGTGAGCAAACGG+AGG | 0.689685 | 3_1:+78811666 | None:intergenic |
| AGAACAGCAACAAGGGACGT+AGG | 0.690869 | 3_1:+78811809 | None:intergenic |
| CCTGAAGCTATATGGCAAGG+TGG | 0.693132 | 3_1:-78811773 | Msa0378110:CDS |
| TAAAGCCTCAAAGTGAAGCG+AGG | 0.698513 | 3_1:-78811868 | Msa0378110:CDS |
| TATATAGGTATAACACACGT+CGG | 0.727621 | 3_1:-78810451 | Msa0378110:intron |
| ATAGGTATAACACACGTCGG+TGG | 0.737739 | 3_1:-78810448 | Msa0378110:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTATAATTAATTAATATAT+GGG | + | chr3_1:78809865-78809884 | None:intergenic | 0.0% |
| !! | TATTATAATTAATTAATATA+TGG | + | chr3_1:78809866-78809885 | None:intergenic | 0.0% |
| !!! | TTTTAATTAAGTCTTTTTTT+TGG | - | chr3_1:78810318-78810337 | Msa0378110:intron | 10.0% |
| !!! | TTTAATTAAGTCTTTTTTTT+GGG | - | chr3_1:78810319-78810338 | Msa0378110:intron | 10.0% |
| !!! | TTTATATATAAGTTCTATTT+TGG | - | chr3_1:78812305-78812324 | Msa0378110:five_prime_UTR | 10.0% |
| !!! | AATACATCTTTTCAAATATT+AGG | + | chr3_1:78808665-78808684 | None:intergenic | 15.0% |
| !! | AAAAAGTGGTAAAAAATATA+AGG | + | chr3_1:78808835-78808854 | None:intergenic | 15.0% |
| !! | TGATGATTAATGTAATATAT+TGG | + | chr3_1:78808896-78808915 | None:intergenic | 15.0% |
| !!! | TATACATTAATTTTAGTAGT+TGG | - | chr3_1:78809609-78809628 | Msa0378110:intron | 15.0% |
| !!! | ATACATTAATTTTAGTAGTT+GGG | - | chr3_1:78809610-78809629 | Msa0378110:intron | 15.0% |
| !! | AGGGTTTAATTAATTTATAT+AGG | - | chr3_1:78809954-78809973 | Msa0378110:intron | 15.0% |
| !!! | TTTTTCAAATTAGACTAATT+AGG | + | chr3_1:78810362-78810381 | None:intergenic | 15.0% |
| !!! | AATATACTACACATTTTTTA+AGG | - | chr3_1:78811192-78811211 | Msa0378110:intron | 15.0% |
| !! | AAATTATTTGAGGATAATTT+AGG | + | chr3_1:78811371-78811390 | None:intergenic | 15.0% |
| !!! | TAAAAATAATTGAGTTGATA+AGG | + | chr3_1:78811445-78811464 | None:intergenic | 15.0% |
| !!! | GATCTTTCTTTTTATTTATT+TGG | + | chr3_1:78811653-78811672 | None:intergenic | 15.0% |
| !!! | TTATTTTTGTTTCTTCTTAT+TGG | - | chr3_1:78812212-78812231 | Msa0378110:five_prime_UTR | 15.0% |
| !! | TTGTTAAAAAAATTATGAGA+TGG | - | chr3_1:78812329-78812348 | Msa0378110:five_prime_UTR | 15.0% |
| !! | TGTTAAAAAAATTATGAGAT+GGG | - | chr3_1:78812330-78812349 | Msa0378110:five_prime_UTR | 15.0% |
| !! | ATGATGTGATTAAAAAAAAG+TGG | + | chr3_1:78808849-78808868 | None:intergenic | 20.0% |
| !!! | TTTTTAATCACATCATCAAT+CGG | - | chr3_1:78808853-78808872 | Msa0378110:three_prime_UTR | 20.0% |
| !! | GCTATTTATAGAAAAATGAT+TGG | + | chr3_1:78808984-78809003 | None:intergenic | 20.0% |
| !! | AACAAATTAGCAAACAATAA+TGG | - | chr3_1:78809072-78809091 | Msa0378110:CDS | 20.0% |
| !! | AACAAAGAAATTGAGAATAA+TGG | - | chr3_1:78809571-78809590 | Msa0378110:intron | 20.0% |
| !! | ACAAAGAAATTGAGAATAAT+GGG | - | chr3_1:78809572-78809591 | Msa0378110:intron | 20.0% |
| !! | CTTATTATAACATAACTTTG+AGG | - | chr3_1:78809658-78809677 | Msa0378110:intron | 20.0% |
| !! | AGACTTAATTAAAAATTACC+TGG | + | chr3_1:78810312-78810331 | None:intergenic | 20.0% |
| !!! | TAAAATTTAAAATTAGTCCG+TGG | + | chr3_1:78810447-78810466 | None:intergenic | 20.0% |
| !!! | AGGAAAATCATATTTTACTA+CGG | + | chr3_1:78810678-78810697 | None:intergenic | 20.0% |
| !!! | TGTTGATTCTAATAAAAGTT+TGG | + | chr3_1:78810784-78810803 | None:intergenic | 20.0% |
| !! | GTATATTATGTAGTAACAAT+TGG | + | chr3_1:78811179-78811198 | None:intergenic | 20.0% |
| !! | CTTAAGAGTAAAATTATTTG+AGG | + | chr3_1:78811381-78811400 | None:intergenic | 20.0% |
| !!! | TTTTTTTTATAAGCAACTAG+CGG | + | chr3_1:78811620-78811639 | None:intergenic | 20.0% |
| !!! | GTTAATTATTTATTTTGCAG+TGG | - | chr3_1:78811791-78811810 | Msa0378110:CDS | 20.0% |
| !! | GTTAAAAAAATTATGAGATG+GGG | - | chr3_1:78812331-78812350 | Msa0378110:five_prime_UTR | 20.0% |
| !! | TGGAAATTTATTCATAGTAT+AGG | + | chr3_1:78812398-78812417 | None:intergenic | 20.0% |
| !! | GATGTATTTGATTTCAATCA+TGG | - | chr3_1:78808677-78808696 | Msa0378110:three_prime_UTR | 25.0% |
| ! | AAAACAAATACTCCACATTA+AGG | - | chr3_1:78808758-78808777 | Msa0378110:three_prime_UTR | 25.0% |
| ! | CAAAGAAATTGAGAATAATG+GGG | - | chr3_1:78809573-78809592 | Msa0378110:intron | 25.0% |
| ! | TGAATATGTTTCCATGAATA+TGG | - | chr3_1:78809684-78809703 | Msa0378110:intron | 25.0% |
| ! | TACAAAATCAACTTGTAAGT+TGG | + | chr3_1:78809806-78809825 | None:intergenic | 25.0% |
| !!! | CGTATGAATTTTTTGTTTTG+AGG | + | chr3_1:78809931-78809950 | None:intergenic | 25.0% |
| ! | CAAAACAAAAAATTCATACG+TGG | - | chr3_1:78809931-78809950 | Msa0378110:intron | 25.0% |
| ! | TAAAACAAACTCATTTCATC+TGG | + | chr3_1:78810090-78810109 | None:intergenic | 25.0% |
| ! | AAATATCCAAACATACTCAA+AGG | - | chr3_1:78810240-78810259 | Msa0378110:intron | 25.0% |
| !!! | TATGTATTTGTTGTTGAGAA+GGG | + | chr3_1:78810701-78810720 | None:intergenic | 25.0% |
| !!! | ATATGTATTTGTTGTTGAGA+AGG | + | chr3_1:78810702-78810721 | None:intergenic | 25.0% |
| ! | GTAATAAAAAAGAGTAGGTA+GGG | + | chr3_1:78810762-78810781 | None:intergenic | 25.0% |
| !! | GTTTGGTAATAAAAAAGAGT+AGG | + | chr3_1:78810767-78810786 | None:intergenic | 25.0% |
| ! | GTTCAACACTATTCTAATTT+AGG | + | chr3_1:78810827-78810846 | None:intergenic | 25.0% |
| ! | TAAATCTACACCATAATTCA+AGG | - | chr3_1:78811470-78811489 | Msa0378110:intron | 25.0% |
| !!! | TTGTTTTGTTCCTTGAATTA+TGG | + | chr3_1:78811483-78811502 | None:intergenic | 25.0% |
| ! | CTTTAATGCTCAAGAAAAAT+TGG | + | chr3_1:78811538-78811557 | None:intergenic | 25.0% |
| ! | AATGACAATGTATAGAACTA+AGG | - | chr3_1:78811975-78811994 | Msa0378110:five_prime_UTR | 25.0% |
| ! | ATGACAATGTATAGAACTAA+GGG | - | chr3_1:78811976-78811995 | Msa0378110:five_prime_UTR | 25.0% |
| ! | AAGTTGTTTGAATTGTTCTT+CGG | + | chr3_1:78812013-78812032 | None:intergenic | 25.0% |
| !!! | AATTCTAGAACAGGAAAATA+AGG | + | chr3_1:78812081-78812100 | None:intergenic | 25.0% |
| ! | GTGTTGTATTTGAACTTTAT+TGG | - | chr3_1:78812239-78812258 | Msa0378110:five_prime_UTR | 25.0% |
| ! | AGGAATCGATACTAATTAAT+TGG | - | chr3_1:78812364-78812383 | Msa0378110:five_prime_UTR | 25.0% |
| TACAATGCTTTCATTTGCAT+AGG | + | chr3_1:78808611-78808630 | None:intergenic | 30.0% | |
| CTTGACTATTTACCTTAATG+TGG | + | chr3_1:78808773-78808792 | None:intergenic | 30.0% | |
| ! | TAGCAAACAATAATGGAGAA+TGG | - | chr3_1:78809079-78809098 | Msa0378110:CDS | 30.0% |
| ! | AGCAAACAATAATGGAGAAT+GGG | - | chr3_1:78809080-78809099 | Msa0378110:CDS | 30.0% |
| ! | TTAATTAAACCTGATAGTGC+TGG | + | chr3_1:78809456-78809475 | None:intergenic | 30.0% |
| AATATGGTACTATCACTCAA+CGG | - | chr3_1:78809700-78809719 | Msa0378110:intron | 30.0% | |
| AACAAAAAATTCATACGTGG+AGG | - | chr3_1:78809934-78809953 | Msa0378110:intron | 30.0% | |
| ACAAAAAATTCATACGTGGA+GGG | - | chr3_1:78809935-78809954 | Msa0378110:intron | 30.0% | |
| TAAAAATTACCTGGCAATTG+AGG | + | chr3_1:78810303-78810322 | None:intergenic | 30.0% | |
| AGACTAATTAGGTTCCAAAA+TGG | + | chr3_1:78810351-78810370 | None:intergenic | 30.0% | |
| TTGACAAATATTAGTGTACC+AGG | - | chr3_1:78810393-78810412 | Msa0378110:intron | 30.0% | |
| TTTATTCAACTCTTGTCTTG+TGG | - | chr3_1:78810506-78810525 | Msa0378110:intron | 30.0% | |
| TATATAGGTATAACACACGT+CGG | - | chr3_1:78810533-78810552 | Msa0378110:intron | 30.0% | |
| GGTAATAAAAAAGAGTAGGT+AGG | + | chr3_1:78810763-78810782 | None:intergenic | 30.0% | |
| TTCATTATCGTCAGATCTTT+AGG | + | chr3_1:78810929-78810948 | None:intergenic | 30.0% | |
| !!! | ATGTTGTTGTTTTGGATCAT+GGG | + | chr3_1:78811018-78811037 | None:intergenic | 30.0% |
| !!! | TATGTTGTTGTTTTGGATCA+TGG | + | chr3_1:78811019-78811038 | None:intergenic | 30.0% |
| !!! | TTGCGAATATGTTGTTGTTT+TGG | + | chr3_1:78811026-78811045 | None:intergenic | 30.0% |
| GTTTACTGTTGTTATCGTTT+GGG | + | chr3_1:78811049-78811068 | None:intergenic | 30.0% | |
| TGTTTACTGTTGTTATCGTT+TGG | + | chr3_1:78811050-78811069 | None:intergenic | 30.0% | |
| !!! | CACATTTTTTAAGGTTGACT+TGG | - | chr3_1:78811201-78811220 | Msa0378110:intron | 30.0% |
| ! | ATCAGCAGTATAGAAGTATA+TGG | + | chr3_1:78811303-78811322 | None:intergenic | 30.0% |
| GCAAGAGAACTATAATTATG+TGG | + | chr3_1:78811404-78811423 | None:intergenic | 30.0% | |
| AAAATTGATTGTTTGTGAGC+CGG | - | chr3_1:78811888-78811907 | Msa0378110:CDS | 30.0% | |
| GAAGAACAATTCAAACAACT+TGG | - | chr3_1:78812012-78812031 | Msa0378110:five_prime_UTR | 30.0% | |
| AAAATAAGGATCAATGTGGA+AGG | + | chr3_1:78812067-78812086 | None:intergenic | 30.0% | |
| !! | CATTTCTGAAATTCTAGAAC+AGG | + | chr3_1:78812090-78812109 | None:intergenic | 30.0% |
| TGAGATGGGGTAAAATAATT+AGG | - | chr3_1:78812344-78812363 | Msa0378110:five_prime_UTR | 30.0% | |
| !! | GATTGTTTTGTGTTTTCAGC+TGG | + | chr3_1:78809032-78809051 | None:intergenic | 35.0% |
| AATGTGTGCAAGTTCCAAAA+TGG | + | chr3_1:78809146-78809165 | None:intergenic | 35.0% | |
| !! | CATTTTGAGAACAGCAACAA+GGG | + | chr3_1:78809185-78809204 | None:intergenic | 35.0% |
| !! | TCATTTTGAGAACAGCAACA+AGG | + | chr3_1:78809186-78809205 | None:intergenic | 35.0% |
| !! | TGAAAGTACCTGAAGCTATA+TGG | - | chr3_1:78809203-78809222 | Msa0378110:intron | 35.0% |
| AACTATGGAGAGAATTTGAG+AGG | + | chr3_1:78809257-78809276 | None:intergenic | 35.0% | |
| GAGTGATAGTACCATATTCA+TGG | + | chr3_1:78809698-78809717 | None:intergenic | 35.0% | |
| TCCAACATTTCATTCATGTG+GGG | + | chr3_1:78810138-78810157 | None:intergenic | 35.0% | |
| CTCCAACATTTCATTCATGT+GGG | + | chr3_1:78810139-78810158 | None:intergenic | 35.0% | |
| TCTCCAACATTTCATTCATG+TGG | + | chr3_1:78810140-78810159 | None:intergenic | 35.0% | |
| ! | GAAATGTTGGAGAAGTATGA+TGG | - | chr3_1:78810147-78810166 | Msa0378110:intron | 35.0% |
| TTGATGCCTTTGAGTATGTT+TGG | + | chr3_1:78810249-78810268 | None:intergenic | 35.0% | |
| !!! | TTTTTGGGTCACTACCATTT+TGG | - | chr3_1:78810334-78810353 | Msa0378110:intron | 35.0% |
| ACAAATATTAGTGTACCAGG+AGG | - | chr3_1:78810396-78810415 | Msa0378110:intron | 35.0% | |
| TTGTCTTGTGGCATGTATAT+AGG | - | chr3_1:78810518-78810537 | Msa0378110:intron | 35.0% | |
| !! | CAACTTTGCAAGCTTGTTTT+GGG | + | chr3_1:78810973-78810992 | None:intergenic | 35.0% |
| ! | GATATTGATAGCTCCAATGT+GGG | + | chr3_1:78811113-78811132 | None:intergenic | 35.0% |
| TCGTTTCTTTGATTCACATC+CGG | + | chr3_1:78811143-78811162 | None:intergenic | 35.0% | |
| ! | ACAATCAATTTTCCGTTCAC+CGG | + | chr3_1:78811880-78811899 | None:intergenic | 35.0% |
| TCTTGTTCTTTGACTCTCAT+CGG | + | chr3_1:78811929-78811948 | None:intergenic | 35.0% | |
| !! | AAGAACAAGAGCATTGTTGT+CGG | - | chr3_1:78811939-78811958 | Msa0378110:five_prime_UTR | 35.0% |
| AAACAACTTGGCATTTCTAC+TGG | - | chr3_1:78812024-78812043 | Msa0378110:five_prime_UTR | 35.0% | |
| CAGGAAAATAAGGATCAATG+TGG | + | chr3_1:78812071-78812090 | None:intergenic | 35.0% | |
| TGCGGTGTTTATTATGTGAT+GGG | - | chr3_1:78812132-78812151 | Msa0378110:intron | 35.0% | |
| TGAAACAATCTAAAGGAAGC+AGG | + | chr3_1:78812175-78812194 | None:intergenic | 35.0% | |
| CTCAGCAAAAATAGCACAAG+TGG | + | chr3_1:78809335-78809354 | None:intergenic | 40.0% | |
| !!! | CACTTGTGCTATTTTTGCTG+AGG | - | chr3_1:78809333-78809352 | Msa0378110:intron | 40.0% |
| AACAAGAGCTTTACCGATGT+CGG | + | chr3_1:78809395-78809414 | None:intergenic | 40.0% | |
| TAGGATAGACCATCATCATC+AGG | + | chr3_1:78809418-78809437 | None:intergenic | 40.0% | |
| !! | TTGTTTTACGCTTCCATGTC+TGG | - | chr3_1:78810102-78810121 | Msa0378110:intron | 40.0% |
| ! | GAGAAGTATGATGGCTTCAA+AGG | - | chr3_1:78810156-78810175 | Msa0378110:intron | 40.0% |
| ! | GTTGATGTTGGTGGAAATTC+TGG | - | chr3_1:78810192-78810211 | Msa0378110:intron | 40.0% |
| GGTGCAGAAGATATCATATC+AGG | + | chr3_1:78810282-78810301 | None:intergenic | 40.0% | |
| AAATTAGTCCGTGGACAAAC+TGG | + | chr3_1:78810438-78810457 | None:intergenic | 40.0% | |
| TGGGGATGCTATCTTTACTA+AGG | - | chr3_1:78810583-78810602 | Msa0378110:intron | 40.0% | |
| !! | GTATTTGTTGTTGAGAAGGG+AGG | + | chr3_1:78810698-78810717 | None:intergenic | 40.0% |
| TGCACGATTTAACACCAACA+TGG | - | chr3_1:78810872-78810891 | Msa0378110:CDS | 40.0% | |
| ACGATTTAACACCAACATGG+TGG | - | chr3_1:78810875-78810894 | Msa0378110:CDS | 40.0% | |
| CGATTTAACACCAACATGGT+GGG | - | chr3_1:78810876-78810895 | Msa0378110:CDS | 40.0% | |
| ! | AATGGGTTCTTCCTTTATGG+TGG | + | chr3_1:78810903-78810922 | None:intergenic | 40.0% |
| ! | TGCAATGGGTTCTTCCTTTA+TGG | + | chr3_1:78810906-78810925 | None:intergenic | 40.0% |
| GTCAGATCTTTAGGTGCAAT+GGG | + | chr3_1:78810920-78810939 | None:intergenic | 40.0% | |
| TGACGATAATGAACCCATGA+AGG | - | chr3_1:78810936-78810955 | Msa0378110:CDS | 40.0% | |
| !! | GCAACTTTGCAAGCTTGTTT+TGG | + | chr3_1:78810974-78810993 | None:intergenic | 40.0% |
| GAATCTATTGCGTGTTTGAG+TGG | + | chr3_1:78811074-78811093 | None:intergenic | 40.0% | |
| TTAGTGTCATGAACCCACAT+TGG | - | chr3_1:78811097-78811116 | Msa0378110:intron | 40.0% | |
| ! | CGATATTGATAGCTCCAATG+TGG | + | chr3_1:78811114-78811133 | None:intergenic | 40.0% |
| GCTATCAATATCGAACCAAC+CGG | - | chr3_1:78811121-78811140 | Msa0378110:intron | 40.0% | |
| TTCTTTGATTCACATCCGGT+TGG | + | chr3_1:78811139-78811158 | None:intergenic | 40.0% | |
| ATAAGCAACTAGCGGAAAGA+CGG | + | chr3_1:78811612-78811631 | None:intergenic | 40.0% | |
| TGCAGTGGACAATGTTAACA+TGG | - | chr3_1:78811806-78811825 | Msa0378110:CDS | 40.0% | |
| GACAGATGAAGAATGCAAGA+AGG | - | chr3_1:78811828-78811847 | Msa0378110:CDS | 40.0% | |
| !! | AGAACAAGAGCATTGTTGTC+GGG | - | chr3_1:78811940-78811959 | Msa0378110:five_prime_UTR | 40.0% |
| ATAAACACCGCACACTTCAA+AGG | + | chr3_1:78812124-78812143 | None:intergenic | 40.0% | |
| GTGCGGTGTTTATTATGTGA+TGG | - | chr3_1:78812131-78812150 | Msa0378110:intron | 40.0% | |
| GCGGTGTTTATTATGTGATG+GGG | - | chr3_1:78812133-78812152 | Msa0378110:intron | 40.0% | |
| ! | CCAGCGTTGAAACAATCTAA+AGG | + | chr3_1:78812182-78812201 | None:intergenic | 40.0% |
| CCTTTAGATTGTTTCAACGC+TGG | - | chr3_1:78812179-78812198 | Msa0378110:five_prime_UTR | 40.0% | |
| TCTCAATACAAGATGTGTCG+AGG | + | chr3_1:78812269-78812288 | None:intergenic | 40.0% | |
| TCGACACATCTTGTATTGAG+AGG | - | chr3_1:78812268-78812287 | Msa0378110:five_prime_UTR | 40.0% | |
| GGAGAATGGGAAAGTTCATG+TGG | - | chr3_1:78809093-78809112 | Msa0378110:CDS | 45.0% | |
| TAAAGCCTCAAAGTGAAGCG+AGG | - | chr3_1:78809116-78809135 | Msa0378110:CDS | 45.0% | |
| GTACCTGAAGCTATATGGCA+AGG | - | chr3_1:78809208-78809227 | Msa0378110:intron | 45.0% | |
| AGAATTTGAGAGGCAGAGAG+TGG | + | chr3_1:78809247-78809266 | None:intergenic | 45.0% | |
| TAGCACAAGTGGTGAGCAAA+CGG | + | chr3_1:78809324-78809343 | None:intergenic | 45.0% | |
| ACTTGAGCAGCAATGGCAAA+AGG | - | chr3_1:78809356-78809375 | Msa0378110:intron | 45.0% | |
| ! | GCTCTTGTTCCTGATGATGA+TGG | - | chr3_1:78809406-78809425 | Msa0378110:intron | 45.0% |
| GCCCCACATGAATGAAATGT+TGG | - | chr3_1:78810134-78810153 | Msa0378110:intron | 45.0% | |
| GTATGATGGCTTCAAAGGTG+TGG | - | chr3_1:78810161-78810180 | Msa0378110:intron | 45.0% | |
| ! | GTGGAGACTCTAGTTGATGT+TGG | - | chr3_1:78810180-78810199 | Msa0378110:intron | 45.0% |
| ! | GAGACTCTAGTTGATGTTGG+TGG | - | chr3_1:78810183-78810202 | Msa0378110:intron | 45.0% |
| CCACTAATAATACAGCCTCC+TGG | + | chr3_1:78810414-78810433 | None:intergenic | 45.0% | |
| CCAGGAGGCTGTATTATTAG+TGG | - | chr3_1:78810411-78810430 | Msa0378110:CDS | 45.0% | |
| ! | TTAGTGGACCAGTTTGTCCA+CGG | - | chr3_1:78810427-78810446 | Msa0378110:CDS | 45.0% |
| ATAGGTATAACACACGTCGG+TGG | - | chr3_1:78810536-78810555 | Msa0378110:intron | 45.0% | |
| TGATGCGCTTGAATCAGTTC+CGG | - | chr3_1:78810559-78810578 | Msa0378110:intron | 45.0% | |
| CGTCAGATCTTTAGGTGCAA+TGG | + | chr3_1:78810921-78810940 | None:intergenic | 45.0% | |
| GGTCTCGTTTCTTCCTTCAT+GGG | + | chr3_1:78810952-78810971 | None:intergenic | 45.0% | |
| CTTGCAAAGTTGCTGAGTCA+TGG | - | chr3_1:78810981-78811000 | Msa0378110:CDS | 45.0% | |
| !! | GAAGAAGCCTTTGAAGTGTG+CGG | - | chr3_1:78812114-78812133 | Msa0378110:five_prime_UTR | 45.0% |
| !!! | CAATTTTTTTTTTTTATATA+CGG | - | chr3_1:78808702-78808721 | Msa0378110:three_prime_UTR | 5.0% |
| !! | TGAAGCGAGGCTTGCCATTT+TGG | - | chr3_1:78809129-78809148 | Msa0378110:CDS | 50.0% |
| AGAACAGCAACAAGGGACGT+AGG | + | chr3_1:78809178-78809197 | None:intergenic | 50.0% | |
| CCACCTTGCCATATAGCTTC+AGG | + | chr3_1:78809214-78809233 | None:intergenic | 50.0% | |
| CCTGAAGCTATATGGCAAGG+TGG | - | chr3_1:78809211-78809230 | Msa0378110:intron | 50.0% | |
| CTCTCCATAGTTCGTCCCAA+CGG | - | chr3_1:78809265-78809284 | Msa0378110:intron | 50.0% | |
| AAGTACTCCCTCACCGACAT+CGG | - | chr3_1:78809379-78809398 | Msa0378110:intron | 50.0% | |
| AGCTTTACCGATGTCGGTGA+GGG | + | chr3_1:78809389-78809408 | None:intergenic | 50.0% | |
| CTGGAGCACGTATGTTGCAT+AGG | + | chr3_1:78809437-78809456 | None:intergenic | 50.0% | |
| ATACGTGCTCCAGCACTATC+AGG | - | chr3_1:78809444-78809463 | Msa0378110:intron | 50.0% | |
| ACCACTGCATCTCCTACCAA+CGG | + | chr3_1:78810000-78810019 | None:intergenic | 50.0% | |
| GAACCGTTCGAGAAGCTACA+CGG | - | chr3_1:78810033-78810052 | Msa0378110:intron | 50.0% | |
| TCTCCGTGTAGCTTCTCGAA+CGG | + | chr3_1:78810039-78810058 | None:intergenic | 50.0% | |
| TTCGAGAAGCTACACGGAGA+AGG | - | chr3_1:78810039-78810058 | Msa0378110:intron | 50.0% | |
| !! | GGGCATTGACAATCCAGACA+TGG | + | chr3_1:78810118-78810137 | None:intergenic | 50.0% |
| TCTTCTGCACCTCAATTGCC+AGG | - | chr3_1:78810291-78810310 | Msa0378110:intron | 50.0% | |
| GTAAAGATAGCATCCCCAGC+CGG | + | chr3_1:78810581-78810600 | None:intergenic | 50.0% | |
| GTGCAGCTTCACGATTCAGT+TGG | + | chr3_1:78810857-78810876 | None:intergenic | 50.0% | |
| TTATGGTGGTCCCACCATGT+TGG | + | chr3_1:78810889-78810908 | None:intergenic | 50.0% | |
| ! | ACATGGTGGGACCACCATAA+AGG | - | chr3_1:78810889-78810908 | Msa0378110:CDS | 50.0% |
| GGGTCTCGTTTCTTCCTTCA+TGG | + | chr3_1:78810953-78810972 | None:intergenic | 50.0% | |
| GGTCTTGCAGAACTGCTACA+AGG | - | chr3_1:78811849-78811868 | Msa0378110:CDS | 50.0% | |
| GAACTGCTACAAGGCTCTTC+CGG | - | chr3_1:78811858-78811877 | Msa0378110:CDS | 50.0% | |
| TACAAGGCTCTTCCGGTGAA+CGG | - | chr3_1:78811865-78811884 | Msa0378110:CDS | 50.0% | |
| GCAAGCCTCGCTTCACTTTG+AGG | + | chr3_1:78809124-78809143 | None:intergenic | 55.0% | |
| TCCATAGTTCGTCCCAACGG+CGG | - | chr3_1:78809268-78809287 | Msa0378110:intron | 55.0% | |
| CACAAGTGGTGAGCAAACGG+AGG | + | chr3_1:78809321-78809340 | None:intergenic | 55.0% | |
| GCTGAGGACTTGAGCAGCAA+TGG | - | chr3_1:78809349-78809368 | Msa0378110:intron | 55.0% | |
| GAGCTTTACCGATGTCGGTG+AGG | + | chr3_1:78809390-78809409 | None:intergenic | 55.0% | |
| ! | GTTGGTAGGAGATGCAGTGG+TGG | - | chr3_1:78809999-78810018 | Msa0378110:intron | 55.0% |
| !! | TGCAGTGGTGGATGCATCTG+TGG | - | chr3_1:78810011-78810030 | Msa0378110:intron | 55.0% |
| CGCTTGAATCAGTTCCGGCT+GGG | - | chr3_1:78810564-78810583 | Msa0378110:intron | 55.0% | |
| GCTTGAATCAGTTCCGGCTG+GGG | - | chr3_1:78810565-78810584 | Msa0378110:intron | 55.0% | |
| !! | TGTTTGTGAGCCGGTGTCAC+CGG | - | chr3_1:78811897-78811916 | Msa0378110:exon | 55.0% |
| TGACTCTCATCGGTCAGCTC+CGG | + | chr3_1:78811919-78811938 | None:intergenic | 55.0% | |
| TCCGCCGTTGGGACGAACTA+TGG | + | chr3_1:78809272-78809291 | None:intergenic | 60.0% | |
| ATAGTTCGTCCCAACGGCGG+AGG | - | chr3_1:78809271-78809290 | Msa0378110:intron | 60.0% | |
| AGGACCAGTACCTGCGAGCA+TGG | - | chr3_1:78809974-78809993 | Msa0378110:intron | 60.0% | |
| ! | GCCGTTGGTAGGAGATGCAG+TGG | - | chr3_1:78809996-78810015 | Msa0378110:intron | 60.0% |
| GCGCTTGAATCAGTTCCGGC+TGG | - | chr3_1:78810563-78810582 | Msa0378110:intron | 60.0% | |
| TCAGCGTCTCCTCCGCCGTT+GGG | + | chr3_1:78809283-78809302 | None:intergenic | 65.0% | |
| TTCAGCGTCTCCTCCGCCGT+TGG | + | chr3_1:78809284-78809303 | None:intergenic | 65.0% | |
| ACGGCCATGCTCGCAGGTAC+TGG | + | chr3_1:78809981-78810000 | None:intergenic | 65.0% | |
| GTACCTGCGAGCATGGCCGT+TGG | - | chr3_1:78809981-78810000 | Msa0378110:intron | 65.0% | |
| CTACCAACGGCCATGCTCGC+AGG | + | chr3_1:78809987-78810006 | None:intergenic | 65.0% | |
| CTGCGAGCATGGCCGTTGGT+AGG | - | chr3_1:78809985-78810004 | Msa0378110:intron | 65.0% | |
| TCGGTCAGCTCCGGTGACAC+CGG | + | chr3_1:78811910-78811929 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 78808579 | 78812427 | 78808579 | ID=Msa0378110;Name=Msa0378110 |
| chr3_1 | mRNA | 78808579 | 78812427 | 78808579 | ID=Msa0378110-mRNA-1;Parent=Msa0378110;Name=Msa0378110-mRNA-1;_AED=0.27;_eAED=0.27;_QI=489|1|1|1|0.75|0.6|5|317|358 |
| chr3_1 | exon | 78808579 | 78809195 | 78808579 | ID=Msa0378110-mRNA-1:exon:19149;Parent=Msa0378110-mRNA-1 |
| chr3_1 | exon | 78810402 | 78810466 | 78810402 | ID=Msa0378110-mRNA-1:exon:19148;Parent=Msa0378110-mRNA-1 |
| chr3_1 | exon | 78810694 | 78811030 | 78810694 | ID=Msa0378110-mRNA-1:exon:19147;Parent=Msa0378110-mRNA-1 |
| chr3_1 | exon | 78811541 | 78812140 | 78811541 | ID=Msa0378110-mRNA-1:exon:19146;Parent=Msa0378110-mRNA-1 |
| chr3_1 | exon | 78812164 | 78812427 | 78812164 | ID=Msa0378110-mRNA-1:exon:19145;Parent=Msa0378110-mRNA-1 |
| chr3_1 | five_prime_UTR | 78812164 | 78812427 | 78812164 | ID=Msa0378110-mRNA-1:five_prime_utr;Parent=Msa0378110-mRNA-1 |
| chr3_1 | five_prime_UTR | 78811916 | 78812140 | 78811916 | ID=Msa0378110-mRNA-1:five_prime_utr;Parent=Msa0378110-mRNA-1 |
| chr3_1 | CDS | 78811541 | 78811915 | 78811541 | ID=Msa0378110-mRNA-1:cds;Parent=Msa0378110-mRNA-1 |
| chr3_1 | CDS | 78810694 | 78811030 | 78810694 | ID=Msa0378110-mRNA-1:cds;Parent=Msa0378110-mRNA-1 |
| chr3_1 | CDS | 78810402 | 78810466 | 78810402 | ID=Msa0378110-mRNA-1:cds;Parent=Msa0378110-mRNA-1 |
| chr3_1 | CDS | 78808896 | 78809195 | 78808896 | ID=Msa0378110-mRNA-1:cds;Parent=Msa0378110-mRNA-1 |
| chr3_1 | three_prime_UTR | 78808579 | 78808895 | 78808579 | ID=Msa0378110-mRNA-1:three_prime_utr;Parent=Msa0378110-mRNA-1 |
| Gene Sequence |
| Protein sequence |
