Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0377900 | CAB65279.1 | 98.473 | 262 | 4 | 0 | 1 | 262 | 1 | 262 | 0.0 | 531 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0377900 | sp|I1M2U5|NAMT1_SOYBN | 57.540 | 252 | 106 | 1 | 12 | 263 | 10 | 260 | 1.35e-102 | 305 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0377900 | Q9SBS0 | 98.473 | 262 | 4 | 0 | 1 | 262 | 1 | 262 | 0.0 | 531 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0011960 | Msa0377900 | -0.800891 | 1.164868e-48 | -8.615850e-47 |
| Msa0013050 | Msa0377900 | 0.838312 | 3.098748e-57 | -8.615850e-47 |
| Msa0023000 | Msa0377900 | -0.812032 | 5.199316e-51 | -8.615850e-47 |
| Msa0095010 | Msa0377900 | -0.807779 | 4.278520e-50 | -8.615850e-47 |
| Msa0118780 | Msa0377900 | -0.803873 | 2.831421e-49 | -8.615850e-47 |
| Msa0148120 | Msa0377900 | -0.801012 | 1.100354e-48 | -8.615850e-47 |
| Msa0162130 | Msa0377900 | -0.803073 | 4.147704e-49 | -8.615850e-47 |
| Msa0168640 | Msa0377900 | 0.804277 | 2.334051e-49 | -8.615850e-47 |
| Msa0183460 | Msa0377900 | -0.811366 | 7.257191e-51 | -8.615850e-47 |
| Msa0186310 | Msa0377900 | -0.845569 | 3.742028e-59 | -8.615850e-47 |
| Msa0187230 | Msa0377900 | -0.802458 | 5.556567e-49 | -8.615850e-47 |
| Msa0189520 | Msa0377900 | -0.862580 | 4.584191e-64 | -8.615850e-47 |
| Msa0231790 | Msa0377900 | -0.807858 | 4.116554e-50 | -8.615850e-47 |
| Msa0236270 | Msa0377900 | -0.820982 | 5.143164e-53 | -8.615850e-47 |
| Msa0377900 | Msa0378100 | 0.822433 | 2.375217e-53 | -8.615850e-47 |
| Msa0377900 | Msa0378110 | 0.974847 | 6.974625e-139 | -8.615850e-47 |
| Msa0377900 | Msa0386040 | -0.828549 | 8.452643e-55 | -8.615850e-47 |
| Msa0377900 | Msa0419640 | 0.844841 | 5.887587e-59 | -8.615850e-47 |
| Msa0377900 | Msa0429950 | -0.816144 | 6.432336e-52 | -8.615850e-47 |
| Msa0377900 | Msa0473820 | 0.901785 | 1.885162e-78 | -8.615850e-47 |
| Msa0377900 | Msa0473830 | 0.973491 | 1.614154e-136 | -8.615850e-47 |
| Msa0377900 | Msa0518060 | 0.853803 | 1.876155e-61 | -8.615850e-47 |
| Msa0377900 | Msa0518070 | 0.975630 | 2.634838e-140 | -8.615850e-47 |
| Msa0377900 | Msa0557480 | -0.816723 | 4.774033e-52 | -8.615850e-47 |
| Msa0377900 | Msa0565620 | 0.846917 | 1.607064e-59 | -8.615850e-47 |
| Msa0377900 | Msa0590650 | -0.803459 | 3.451841e-49 | -8.615850e-47 |
| Msa0377900 | Msa0618010 | -0.811130 | 8.164145e-51 | -8.615850e-47 |
| Msa0377900 | Msa0618200 | 0.828492 | 8.723283e-55 | -8.615850e-47 |
| Msa0377900 | Msa0621080 | 0.941843 | 2.048922e-101 | -8.615850e-47 |
| Msa0377900 | Msa0621090 | 0.832016 | 1.202105e-55 | -8.615850e-47 |
| Msa0377900 | Msa0657460 | 0.823874 | 1.095131e-53 | -8.615850e-47 |
| Msa0377900 | Msa0661710 | -0.852958 | 3.278987e-61 | -8.615850e-47 |
| Msa0377900 | Msa0670270 | -0.810232 | 1.277161e-50 | -8.615850e-47 |
| Msa0377900 | Msa0690250 | -0.802222 | 6.216497e-49 | -8.615850e-47 |
| Msa0377900 | Msa0784380 | -0.804247 | 2.367777e-49 | -8.615850e-47 |
| Msa0377900 | Msa0784860 | -0.811218 | 7.814612e-51 | -8.615850e-47 |
| Msa0377900 | Msa0805500 | -0.809170 | 2.160049e-50 | -8.615850e-47 |
| Msa0377900 | Msa0899240 | 0.810759 | 9.824721e-51 | -8.615850e-47 |
| Msa0377900 | Msa0942550 | 0.804175 | 2.451028e-49 | -8.615850e-47 |
| Msa0377900 | Msa0942560 | 0.821250 | 4.460896e-53 | -8.615850e-47 |
| Msa0377900 | Msa0974810 | -0.808716 | 2.700746e-50 | -8.615850e-47 |
| Msa0377900 | Msa1001580 | -0.809129 | 2.203704e-50 | -8.615850e-47 |
| Msa0377900 | Msa1029080 | 0.802622 | 5.141634e-49 | -8.615850e-47 |
| Msa0377900 | Msa1047400 | -0.807715 | 4.415490e-50 | -8.615850e-47 |
| Msa0377900 | Msa1103660 | 0.811035 | 8.562642e-51 | -8.615850e-47 |
| Msa0377900 | Msa1108440 | 0.809685 | 1.674821e-50 | -8.615850e-47 |
| Msa0377900 | Msa1126120 | 0.822333 | 2.505014e-53 | -8.615850e-47 |
| Msa0377900 | Msa1136540 | -0.811851 | 5.692232e-51 | -8.615850e-47 |
| Msa0377900 | Msa1253800 | -0.836063 | 1.165547e-56 | -8.615850e-47 |
| Msa0377900 | Msa1296830 | -0.813246 | 2.819967e-51 | -8.615850e-47 |
| Msa0377900 | Msa1302190 | 0.803049 | 4.196866e-49 | -8.615850e-47 |
| Msa0377900 | Msa1366650 | -0.841438 | 4.751317e-58 | -8.615850e-47 |
| Msa0377900 | Msa1403580 | 0.802085 | 6.631327e-49 | -8.615850e-47 |
| Msa0377900 | Msa1412930 | 0.835239 | 1.883795e-56 | -8.615850e-47 |
| Msa0377900 | Msa1436520 | -0.800837 | 1.194939e-48 | -8.615850e-47 |
| Msa0377900 | Msa1460470 | -0.804087 | 2.555692e-49 | -8.615850e-47 |
| Msa0271360 | Msa0377900 | -0.847749 | 9.497643e-60 | -8.615850e-47 |
| Msa0309880 | Msa0377900 | -0.825496 | 4.540401e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0377900 | MtrunA17_Chr3g0130061 | 93.893 | 262 | 16 | 0 | 1 | 262 | 1 | 262 | 0.0 | 510 |
| Msa0377900 | MtrunA17_Chr3g0130011 | 87.405 | 262 | 33 | 0 | 1 | 262 | 1 | 262 | 2.89e-170 | 474 |
| Msa0377900 | MtrunA17_Chr2g0314271 | 56.078 | 255 | 111 | 1 | 9 | 263 | 6 | 259 | 2.67e-105 | 309 |
| Msa0377900 | MtrunA17_Chr3g0128011 | 38.000 | 250 | 149 | 4 | 14 | 259 | 72 | 319 | 1.89e-44 | 155 |
| Msa0377900 | MtrunA17_Chr7g0276411 | 33.333 | 246 | 156 | 3 | 20 | 259 | 21 | 264 | 4.23e-43 | 150 |
| Msa0377900 | MtrunA17_Chr5g0448091 | 37.154 | 253 | 148 | 7 | 14 | 259 | 17 | 265 | 2.11e-42 | 148 |
| Msa0377900 | MtrunA17_Chr8g0367451 | 35.628 | 247 | 149 | 5 | 20 | 259 | 35 | 278 | 5.85e-42 | 147 |
| Msa0377900 | MtrunA17_Chr8g0367441 | 35.772 | 246 | 150 | 4 | 20 | 259 | 36 | 279 | 2.03e-41 | 146 |
| Msa0377900 | MtrunA17_Chr7g0218181 | 36.630 | 273 | 148 | 9 | 3 | 259 | 6 | 269 | 7.87e-41 | 144 |
| Msa0377900 | MtrunA17_Chr1g0200491 | 36.296 | 270 | 156 | 7 | 2 | 259 | 9 | 274 | 1.37e-40 | 144 |
| Msa0377900 | MtrunA17_Chr7g0218131 | 36.704 | 267 | 157 | 7 | 2 | 259 | 9 | 272 | 3.29e-39 | 140 |
| Msa0377900 | MtrunA17_Chr8g0367491 | 33.333 | 249 | 158 | 4 | 17 | 259 | 32 | 278 | 9.90e-39 | 139 |
| Msa0377900 | MtrunA17_Chr7g0218211 | 35.821 | 268 | 158 | 7 | 2 | 259 | 8 | 271 | 5.48e-38 | 137 |
| Msa0377900 | MtrunA17_Chr7g0218271 | 40.000 | 195 | 107 | 4 | 73 | 260 | 87 | 278 | 4.63e-37 | 134 |
| Msa0377900 | MtrunA17_Chr8g0367501 | 32.540 | 252 | 162 | 4 | 14 | 259 | 16 | 265 | 9.05e-37 | 134 |
| Msa0377900 | MtrunA17_Chr7g0218301 | 40.000 | 195 | 107 | 4 | 73 | 260 | 87 | 278 | 1.62e-36 | 133 |
| Msa0377900 | MtrunA17_Chr7g0218261 | 35.448 | 268 | 160 | 8 | 2 | 260 | 8 | 271 | 2.61e-36 | 132 |
| Msa0377900 | MtrunA17_Chr7g0276401 | 32.836 | 268 | 169 | 5 | 1 | 259 | 12 | 277 | 2.97e-36 | 132 |
| Msa0377900 | MtrunA17_Chr1g0163611 | 36.122 | 263 | 152 | 11 | 9 | 260 | 15 | 272 | 4.62e-36 | 131 |
| Msa0377900 | MtrunA17_Chr8g0367381 | 34.146 | 246 | 135 | 4 | 20 | 259 | 36 | 260 | 8.76e-36 | 130 |
| Msa0377900 | MtrunA17_Chr2g0307521 | 33.460 | 263 | 166 | 6 | 3 | 259 | 6 | 265 | 2.66e-35 | 129 |
| Msa0377900 | MtrunA17_Chr1g0163601 | 35.115 | 262 | 156 | 9 | 9 | 260 | 15 | 272 | 1.97e-34 | 127 |
| Msa0377900 | MtrunA17_Chr3g0085201 | 35.294 | 238 | 143 | 4 | 32 | 262 | 30 | 263 | 6.92e-34 | 125 |
| Msa0377900 | MtrunA17_Chr1g0163621 | 39.000 | 200 | 107 | 4 | 70 | 260 | 93 | 286 | 3.74e-33 | 124 |
| Msa0377900 | MtrunA17_Chr3g0085211 | 35.849 | 212 | 128 | 3 | 55 | 262 | 69 | 276 | 1.04e-32 | 122 |
| Msa0377900 | MtrunA17_Chr8g0345851 | 38.182 | 165 | 100 | 2 | 95 | 259 | 30 | 192 | 3.74e-30 | 114 |
| Msa0377900 | MtrunA17_Chr4g0022021 | 31.008 | 258 | 168 | 6 | 8 | 259 | 17 | 270 | 2.54e-29 | 114 |
| Msa0377900 | MtrunA17_Chr4g0021981 | 31.008 | 258 | 168 | 6 | 8 | 259 | 17 | 270 | 1.22e-27 | 109 |
| Msa0377900 | MtrunA17_Chr8g0367401 | 47.321 | 112 | 58 | 1 | 150 | 261 | 2 | 112 | 9.97e-27 | 101 |
| Msa0377900 | MtrunA17_Chr6g0482291 | 54.023 | 87 | 39 | 1 | 173 | 259 | 1 | 86 | 1.62e-23 | 94.0 |
| Msa0377900 | MtrunA17_Chr5g0432251 | 28.017 | 232 | 159 | 5 | 31 | 259 | 32 | 258 | 2.95e-21 | 91.7 |
| Msa0377900 | MtrunA17_Chr1g0170941 | 55.844 | 77 | 33 | 1 | 181 | 257 | 1 | 76 | 4.49e-21 | 84.7 |
| Msa0377900 | MtrunA17_Chr3g0121301 | 29.130 | 230 | 149 | 7 | 34 | 259 | 42 | 261 | 1.35e-19 | 87.0 |
| Msa0377900 | MtrunA17_Chr5g0432301 | 26.437 | 261 | 180 | 7 | 2 | 259 | 8 | 259 | 9.34e-19 | 84.7 |
| Msa0377900 | MtrunA17_Chr5g0432241 | 26.616 | 263 | 177 | 9 | 2 | 259 | 8 | 259 | 5.36e-18 | 82.4 |
| Msa0377900 | MtrunA17_Chr4g0014561 | 29.839 | 248 | 155 | 9 | 24 | 259 | 23 | 263 | 1.17e-17 | 81.6 |
| Msa0377900 | MtrunA17_Chr4g0040621 | 28.736 | 261 | 164 | 10 | 12 | 259 | 18 | 269 | 1.70e-17 | 81.3 |
| Msa0377900 | MtrunA17_Chr4g0014681 | 29.435 | 248 | 156 | 9 | 24 | 259 | 23 | 263 | 1.23e-16 | 78.6 |
| Msa0377900 | MtrunA17_Chr8g0367421 | 37.500 | 112 | 52 | 1 | 150 | 261 | 2 | 95 | 1.89e-16 | 73.6 |
| Msa0377900 | MtrunA17_Chr8g0367471 | 55.738 | 61 | 26 | 1 | 181 | 241 | 9 | 68 | 7.42e-16 | 71.2 |
| Msa0377900 | MtrunA17_Chr7g0223241 | 28.333 | 240 | 145 | 9 | 29 | 259 | 29 | 250 | 9.11e-16 | 75.9 |
| Msa0377900 | MtrunA17_Chr4g0014641 | 28.033 | 239 | 155 | 8 | 31 | 259 | 32 | 263 | 2.39e-15 | 74.7 |
| Msa0377900 | MtrunA17_Chr4g0014601 | 27.126 | 247 | 165 | 9 | 24 | 263 | 23 | 261 | 5.01e-15 | 72.8 |
| Msa0377900 | MtrunA17_Chr1g0188371 | 26.250 | 240 | 159 | 8 | 29 | 259 | 30 | 260 | 1.48e-14 | 72.8 |
| Msa0377900 | MtrunA17_Chr4g0014591 | 26.749 | 243 | 163 | 9 | 24 | 259 | 23 | 257 | 2.09e-13 | 69.3 |
| Msa0377900 | MtrunA17_Chr4g0014661 | 26.749 | 243 | 163 | 9 | 24 | 259 | 23 | 257 | 2.52e-13 | 68.9 |
| Msa0377900 | MtrunA17_Chr7g0223231 | 27.801 | 241 | 145 | 9 | 29 | 259 | 29 | 250 | 3.60e-13 | 68.6 |
| Msa0377900 | MtrunA17_Chr7g0219141 | 26.860 | 242 | 155 | 8 | 31 | 262 | 32 | 261 | 4.70e-12 | 65.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0377900 | AT3G53140.1 | 53.125 | 256 | 116 | 1 | 12 | 263 | 9 | 264 | 3.51e-94 | 281 |
| Msa0377900 | AT5G54160.1 | 40.400 | 250 | 141 | 5 | 14 | 259 | 18 | 263 | 1.64e-47 | 162 |
| Msa0377900 | AT1G51990.1 | 34.123 | 211 | 134 | 2 | 53 | 259 | 54 | 263 | 1.39e-35 | 130 |
| Msa0377900 | AT1G51990.2 | 34.597 | 211 | 133 | 2 | 53 | 259 | 54 | 263 | 5.69e-35 | 129 |
| Msa0377900 | AT1G33030.3 | 33.198 | 247 | 157 | 5 | 23 | 262 | 10 | 255 | 1.54e-34 | 125 |
| Msa0377900 | AT1G33030.2 | 32.794 | 247 | 158 | 5 | 23 | 262 | 10 | 255 | 2.49e-34 | 125 |
| Msa0377900 | AT1G33030.1 | 32.787 | 244 | 156 | 5 | 23 | 259 | 10 | 252 | 1.27e-32 | 122 |
| Msa0377900 | AT1G77520.1 | 31.474 | 251 | 155 | 7 | 22 | 259 | 36 | 282 | 3.15e-30 | 116 |
| Msa0377900 | AT1G21130.2 | 33.840 | 263 | 161 | 8 | 8 | 261 | 18 | 276 | 9.09e-24 | 97.8 |
| Msa0377900 | AT1G21100.1 | 33.716 | 261 | 160 | 8 | 8 | 259 | 18 | 274 | 1.51e-23 | 98.6 |
| Msa0377900 | AT1G77530.1 | 34.800 | 250 | 148 | 7 | 22 | 259 | 36 | 282 | 2.71e-23 | 97.8 |
| Msa0377900 | AT4G35160.1 | 29.740 | 269 | 177 | 6 | 1 | 262 | 15 | 278 | 3.24e-23 | 97.8 |
| Msa0377900 | AT1G21120.1 | 33.846 | 260 | 161 | 7 | 8 | 259 | 18 | 274 | 6.25e-23 | 96.7 |
| Msa0377900 | AT5G53810.1 | 32.377 | 244 | 149 | 8 | 29 | 259 | 39 | 279 | 1.11e-22 | 96.3 |
| Msa0377900 | AT1G21120.2 | 34.231 | 260 | 160 | 7 | 8 | 259 | 66 | 322 | 1.61e-22 | 96.3 |
| Msa0377900 | AT1G63140.1 | 31.621 | 253 | 158 | 6 | 21 | 261 | 55 | 304 | 2.42e-22 | 94.4 |
| Msa0377900 | AT1G21110.1 | 33.462 | 260 | 162 | 7 | 8 | 259 | 18 | 274 | 2.80e-22 | 95.1 |
| Msa0377900 | AT1G21130.1 | 33.333 | 261 | 161 | 8 | 8 | 259 | 18 | 274 | 2.80e-22 | 95.1 |
| Msa0377900 | AT5G37170.2 | 50.000 | 94 | 45 | 2 | 167 | 259 | 43 | 135 | 1.06e-21 | 90.9 |
| Msa0377900 | AT5G37170.1 | 50.000 | 94 | 45 | 2 | 167 | 259 | 143 | 235 | 4.85e-21 | 90.9 |
| Msa0377900 | AT1G63140.2 | 31.076 | 251 | 158 | 6 | 21 | 259 | 35 | 282 | 6.73e-21 | 91.3 |
| Msa0377900 | AT1G63140.4 | 31.076 | 251 | 158 | 6 | 21 | 259 | 55 | 302 | 7.66e-21 | 91.3 |
| Msa0377900 | AT5G37170.3 | 52.273 | 88 | 40 | 2 | 173 | 259 | 1 | 87 | 8.78e-21 | 87.4 |
| Msa0377900 | AT1G76790.1 | 30.888 | 259 | 164 | 7 | 12 | 259 | 12 | 266 | 4.70e-19 | 85.9 |
| Msa0377900 | AT4G35150.1 | 26.616 | 263 | 150 | 6 | 1 | 262 | 1 | 221 | 3.73e-18 | 82.8 |
| Msa0377900 | AT1G62900.1 | 48.913 | 92 | 46 | 1 | 168 | 259 | 16 | 106 | 4.30e-17 | 77.8 |
| Msa0377900 | AT1G77530.2 | 32.751 | 229 | 139 | 7 | 22 | 238 | 36 | 261 | 7.26e-15 | 72.8 |
| Msa0377900 | AT1G63140.3 | 29.204 | 226 | 145 | 6 | 21 | 234 | 55 | 277 | 3.55e-12 | 65.5 |
Find 69 sgRNAs with CRISPR-Local
Find 210 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGAAGCGAGGCTTGCCATTT+TGG | 0.196493 | 3_1:-78566581 | Msa0377900:CDS |
| GTTGATGTTGGTGGAAATTC+TGG | 0.276999 | 3_1:-78565518 | Msa0377900:CDS |
| TGAAAGTACCTGAAGCTATA+TGG | 0.371128 | 3_1:-78566507 | Msa0377900:CDS |
| TCCGCCGTTGGGATGAACTA+TGG | 0.378041 | 3_1:+78566441 | None:intergenic |
| CCACCTTGCCATATAGCTTC+AGG | 0.378883 | 3_1:+78566499 | None:intergenic |
| TTGATGCCTTTGAGTATGTT+TGG | 0.379016 | 3_1:+78565464 | None:intergenic |
| GCAAGCCTCGCTTCACTTTG+AGG | 0.394145 | 3_1:+78566589 | None:intergenic |
| CGCTTGAATCAGTTCCGGCT+GGG | 0.404048 | 3_1:-78565146 | Msa0377900:CDS |
| ATACGTGCTCCAGCACTATC+AGG | 0.414549 | 3_1:-78566266 | Msa0377900:intron |
| TAGCAAACAATAATGGAGAA+TGG | 0.439987 | 3_1:-78566631 | None:intergenic |
| GGTGCAGAAGATATCATATC+AGG | 0.442330 | 3_1:+78565431 | None:intergenic |
| TAAAACAAACTCATTTCATC+TGG | 0.446989 | 3_1:+78565623 | None:intergenic |
| TTAATTAAACCTGATAGTGC+TGG | 0.454163 | 3_1:+78566257 | None:intergenic |
| TCAGCGTCTCCTCCGCCGTT+GGG | 0.454761 | 3_1:+78566430 | None:intergenic |
| AGCAAACAATAATGGAGAAT+GGG | 0.456384 | 3_1:-78566630 | None:intergenic |
| TTCAGCGTCTCCTCCGCCGT+TGG | 0.458395 | 3_1:+78566429 | None:intergenic |
| GCGCTTGAATCAGTTCCGGC+TGG | 0.463667 | 3_1:-78565147 | Msa0377900:CDS |
| AATGTGTGCAAGTTCCAAAA+TGG | 0.463723 | 3_1:+78566567 | None:intergenic |
| ACGGCCATGCTCGCAGGTAC+TGG | 0.467387 | 3_1:+78565732 | None:intergenic |
| AGAATTTGAGAGGCAGAGAG+TGG | 0.478385 | 3_1:+78566466 | None:intergenic |
| CTCCAACATTTCATTCATGT+GGG | 0.482731 | 3_1:+78565574 | None:intergenic |
| CTACCAACGGCCATGCTCGC+AGG | 0.494673 | 3_1:+78565726 | None:intergenic |
| TAGGATAGACCATCATCATC+AGG | 0.497441 | 3_1:+78566295 | None:intergenic |
| TAGCATAAGTGGTGAGCAAA+CGG | 0.507794 | 3_1:+78566389 | None:intergenic |
| TGATGCGCTTGAATCAGTTC+CGG | 0.509380 | 3_1:-78565151 | Msa0377900:CDS |
| GCTGAGGACTTGAGCAGCAA+TGG | 0.515616 | 3_1:-78566361 | Msa0377900:CDS |
| TCTCCAACATTTCATTCATG+TGG | 0.521489 | 3_1:+78565573 | None:intergenic |
| TCTTCTGCACCTCAATTGCC+AGG | 0.528773 | 3_1:-78565419 | Msa0377900:intron |
| GAGAAGTATGATGGCTTCAA+AGG | 0.539698 | 3_1:-78565554 | Msa0377900:CDS |
| ACTTGAGCAGCAATGGCAAA+AGG | 0.541451 | 3_1:-78566354 | Msa0377900:CDS |
| TGGGGATGCTATCTTTACTA+AGG | 0.549158 | 3_1:-78565127 | Msa0377900:CDS |
| GCCCCACATGAATGAAATGT+TGG | 0.550679 | 3_1:-78565576 | Msa0377900:CDS |
| CTGCGAGCATGGCCGTTGGT+AGG | 0.552621 | 3_1:-78565725 | Msa0377900:CDS |
| GCTCTTGTTCCTGATGATGA+TGG | 0.560343 | 3_1:-78566304 | Msa0377900:CDS |
| GCTTGAATCAGTTCCGGCTG+GGG | 0.562608 | 3_1:-78565145 | Msa0377900:CDS |
| ATAGTTCATCCCAACGGCGG+AGG | 0.568392 | 3_1:-78566439 | Msa0377900:CDS |
| CTGGAGCACGTATGTTGCAT+AGG | 0.569843 | 3_1:+78566276 | None:intergenic |
| AACAAGAGCTTTACCGATGT+CGG | 0.570815 | 3_1:+78566318 | None:intergenic |
| AGGACCAGTACCTGCGAGCA+TGG | 0.575828 | 3_1:-78565736 | Msa0377900:CDS |
| AGCTTTACCGATGTCGGTGA+GGG | 0.576491 | 3_1:+78566324 | None:intergenic |
| AAGTACTCCCTCACCGACAT+CGG | 0.580829 | 3_1:-78566331 | Msa0377900:CDS |
| GTAAAGATAGCATCCCCAGC+CGG | 0.589819 | 3_1:+78565132 | None:intergenic |
| TCCAACATTTCATTCATGTG+GGG | 0.590027 | 3_1:+78565575 | None:intergenic |
| GTGGAGACTCTAGTTGATGT+TGG | 0.592031 | 3_1:-78565530 | Msa0377900:CDS |
| TCTCCGTGTAGCTTCTCGAA+CGG | 0.592087 | 3_1:+78565674 | None:intergenic |
| GAAATGTTGGAGAAGTATGA+TGG | 0.592269 | 3_1:-78565563 | Msa0377900:CDS |
| GTACCTGAAGCTATATGGCA+AGG | 0.593518 | 3_1:-78566502 | Msa0377900:CDS |
| TTCGAGAAGCTACACGGAGA+AGG | 0.597251 | 3_1:-78565671 | Msa0377900:CDS |
| AAATATCCAAACATACTCAA+AGG | 0.599530 | 3_1:-78565470 | Msa0377900:CDS |
| TGCAGTGGAGGATGCATCTG+TGG | 0.599736 | 3_1:-78565699 | Msa0377900:CDS |
| GCCGTTGGTAGGAGATGCAG+TGG | 0.601834 | 3_1:-78565714 | Msa0377900:CDS |
| CTCTCCATAGTTCATCCCAA+CGG | 0.616279 | 3_1:-78566445 | Msa0377900:CDS |
| GAGCTTTACCGATGTCGGTG+AGG | 0.617425 | 3_1:+78566323 | None:intergenic |
| GTATGATGGCTTCAAAGGTG+TGG | 0.619248 | 3_1:-78565549 | Msa0377900:CDS |
| AACTATGGAGAGAATTTGAG+AGG | 0.619927 | 3_1:+78566456 | None:intergenic |
| GGAGAATGGGAAAGTTCATG+TGG | 0.633634 | 3_1:-78566617 | Msa0377900:CDS |
| GAGACTCTAGTTGATGTTGG+TGG | 0.642194 | 3_1:-78565527 | Msa0377900:CDS |
| GTTGGTAGGAGATGCAGTGG+AGG | 0.654275 | 3_1:-78565711 | Msa0377900:CDS |
| GGGCATTGACAATCCAGACA+TGG | 0.658458 | 3_1:+78565595 | None:intergenic |
| TCCATAGTTCATCCCAACGG+CGG | 0.662667 | 3_1:-78566442 | Msa0377900:CDS |
| GAACCGTTCGAGAAGCTACA+CGG | 0.665044 | 3_1:-78565677 | Msa0377900:CDS |
| TCCACTGCATCTCCTACCAA+CGG | 0.666516 | 3_1:+78565713 | None:intergenic |
| GTACCTGCGAGCATGGCCGT+TGG | 0.674564 | 3_1:-78565729 | Msa0377900:CDS |
| AGAACAGCAACAAGGGACGT+AGG | 0.690869 | 3_1:+78566535 | None:intergenic |
| CCTGAAGCTATATGGCAAGG+TGG | 0.693132 | 3_1:-78566499 | Msa0377900:CDS |
| TAAAGCCTCAAAGTGAAGCG+AGG | 0.698513 | 3_1:-78566594 | Msa0377900:CDS |
| CATAAGTGGTGAGCAAACGG+AGG | 0.707714 | 3_1:+78566392 | None:intergenic |
| TATATAGGTATAACACACGT+CGG | 0.727621 | 3_1:-78565177 | Msa0377900:intron |
| ATAGGTATAACACACGTCGG+TGG | 0.737739 | 3_1:-78565174 | Msa0377900:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTATAATTAATTAATATAT+GGG | + | chr3_1:78565881-78565900 | None:intergenic | 0.0% |
| !! | TATTATAATTAATTAATATA+TGG | + | chr3_1:78565882-78565901 | None:intergenic | 0.0% |
| !! | ATTATAATTAATTAATATAT+GGG | + | chr3_1:78565881-78565900 | None:intergenic | 0.0% |
| !! | TATTATAATTAATTAATATA+TGG | + | chr3_1:78565882-78565901 | None:intergenic | 0.0% |
| !!! | TTTTAATTAAGTCTTTTTTT+TGG | - | chr3_1:78566334-78566353 | Msa0377900:CDS | 10.0% |
| !!! | TTTAATTAAGTCTTTTTTTT+GGG | - | chr3_1:78566335-78566354 | Msa0377900:CDS | 10.0% |
| !!! | TTTTAATTAAGTCTTTTTTT+TGG | - | chr3_1:78566334-78566353 | Msa0377900:CDS | 10.0% |
| !!! | TTTAATTAAGTCTTTTTTTT+GGG | - | chr3_1:78566335-78566354 | Msa0377900:CDS | 10.0% |
| !!! | TATACATTAATTTTAGTAGT+TGG | - | chr3_1:78565625-78565644 | Msa0377900:CDS | 15.0% |
| !!! | ATACATTAATTTTAGTAGTT+GGG | - | chr3_1:78565626-78565645 | Msa0377900:CDS | 15.0% |
| !! | AGGGTTTAATTAATTTATAT+AGG | - | chr3_1:78565970-78565989 | Msa0377900:intron | 15.0% |
| !!! | TTTTTCAAATTAGACTAATT+AGG | + | chr3_1:78566378-78566397 | None:intergenic | 15.0% |
| !!! | TATACATTAATTTTAGTAGT+TGG | - | chr3_1:78565625-78565644 | Msa0377900:CDS | 15.0% |
| !!! | ATACATTAATTTTAGTAGTT+GGG | - | chr3_1:78565626-78565645 | Msa0377900:CDS | 15.0% |
| !! | AGGGTTTAATTAATTTATAT+AGG | - | chr3_1:78565970-78565989 | Msa0377900:intron | 15.0% |
| !!! | TTTTTCAAATTAGACTAATT+AGG | + | chr3_1:78566378-78566397 | None:intergenic | 15.0% |
| !! | AACAAAGAAATTGAGAATAA+TGG | - | chr3_1:78565587-78565606 | Msa0377900:CDS | 20.0% |
| !! | ACAAAGAAATTGAGAATAAT+GGG | - | chr3_1:78565588-78565607 | Msa0377900:CDS | 20.0% |
| !! | CTTATTATAACATAACTTTG+AGG | - | chr3_1:78565674-78565693 | Msa0377900:CDS | 20.0% |
| !! | AGACTTAATTAAAAATTACC+TGG | + | chr3_1:78566328-78566347 | None:intergenic | 20.0% |
| !!! | TAAAATTTAAAATTAGTCCG+TGG | + | chr3_1:78566463-78566482 | None:intergenic | 20.0% |
| !! | AACAAAGAAATTGAGAATAA+TGG | - | chr3_1:78565587-78565606 | Msa0377900:CDS | 20.0% |
| !! | ACAAAGAAATTGAGAATAAT+GGG | - | chr3_1:78565588-78565607 | Msa0377900:CDS | 20.0% |
| !! | CTTATTATAACATAACTTTG+AGG | - | chr3_1:78565674-78565693 | Msa0377900:CDS | 20.0% |
| !! | AGACTTAATTAAAAATTACC+TGG | + | chr3_1:78566328-78566347 | None:intergenic | 20.0% |
| !!! | TAAAATTTAAAATTAGTCCG+TGG | + | chr3_1:78566463-78566482 | None:intergenic | 20.0% |
| ! | CAAAGAAATTGAGAATAATG+GGG | - | chr3_1:78565589-78565608 | Msa0377900:CDS | 25.0% |
| ! | TGAATATGTTTCCATGAATA+TGG | - | chr3_1:78565700-78565719 | Msa0377900:CDS | 25.0% |
| ! | TACAAAATCAACTTGTAAGT+TGG | + | chr3_1:78565822-78565841 | None:intergenic | 25.0% |
| !!! | CGTATGAATTTTTTGTTTTG+AGG | + | chr3_1:78565947-78565966 | None:intergenic | 25.0% |
| ! | CAAAACAAAAAATTCATACG+TGG | - | chr3_1:78565947-78565966 | Msa0377900:intron | 25.0% |
| ! | TAAAACAAACTCATTTCATC+TGG | + | chr3_1:78566106-78566125 | None:intergenic | 25.0% |
| ! | AAATATCCAAACATACTCAA+AGG | - | chr3_1:78566256-78566275 | Msa0377900:intron | 25.0% |
| ! | TTTATTTAACTCTTGTCTTG+TGG | - | chr3_1:78566522-78566541 | Msa0377900:CDS | 25.0% |
| ! | CAAAGAAATTGAGAATAATG+GGG | - | chr3_1:78565589-78565608 | Msa0377900:CDS | 25.0% |
| ! | TGAATATGTTTCCATGAATA+TGG | - | chr3_1:78565700-78565719 | Msa0377900:CDS | 25.0% |
| ! | TACAAAATCAACTTGTAAGT+TGG | + | chr3_1:78565822-78565841 | None:intergenic | 25.0% |
| !!! | CGTATGAATTTTTTGTTTTG+AGG | + | chr3_1:78565947-78565966 | None:intergenic | 25.0% |
| ! | CAAAACAAAAAATTCATACG+TGG | - | chr3_1:78565947-78565966 | Msa0377900:intron | 25.0% |
| ! | TAAAACAAACTCATTTCATC+TGG | + | chr3_1:78566106-78566125 | None:intergenic | 25.0% |
| ! | AAATATCCAAACATACTCAA+AGG | - | chr3_1:78566256-78566275 | Msa0377900:intron | 25.0% |
| ! | TTTATTTAACTCTTGTCTTG+TGG | - | chr3_1:78566522-78566541 | Msa0377900:CDS | 25.0% |
| ! | TTAATTAAACCTGATAGTGC+TGG | + | chr3_1:78565472-78565491 | None:intergenic | 30.0% |
| AATATGGTACTATCACTCAA+CGG | - | chr3_1:78565716-78565735 | Msa0377900:CDS | 30.0% | |
| AACAAAAAATTCATACGTGG+AGG | - | chr3_1:78565950-78565969 | Msa0377900:intron | 30.0% | |
| ACAAAAAATTCATACGTGGA+GGG | - | chr3_1:78565951-78565970 | Msa0377900:intron | 30.0% | |
| TAAAAATTACCTGGCAATTG+AGG | + | chr3_1:78566319-78566338 | None:intergenic | 30.0% | |
| AGACTAATTAGGTTCCAAAA+TGG | + | chr3_1:78566367-78566386 | None:intergenic | 30.0% | |
| TTGACAAATATTAGTGTACC+AGG | - | chr3_1:78566409-78566428 | Msa0377900:CDS | 30.0% | |
| TATATAGGTATAACACACGT+CGG | - | chr3_1:78566549-78566568 | Msa0377900:CDS | 30.0% | |
| ! | TTAATTAAACCTGATAGTGC+TGG | + | chr3_1:78565472-78565491 | None:intergenic | 30.0% |
| AATATGGTACTATCACTCAA+CGG | - | chr3_1:78565716-78565735 | Msa0377900:CDS | 30.0% | |
| AACAAAAAATTCATACGTGG+AGG | - | chr3_1:78565950-78565969 | Msa0377900:intron | 30.0% | |
| ACAAAAAATTCATACGTGGA+GGG | - | chr3_1:78565951-78565970 | Msa0377900:intron | 30.0% | |
| TAAAAATTACCTGGCAATTG+AGG | + | chr3_1:78566319-78566338 | None:intergenic | 30.0% | |
| AGACTAATTAGGTTCCAAAA+TGG | + | chr3_1:78566367-78566386 | None:intergenic | 30.0% | |
| TTGACAAATATTAGTGTACC+AGG | - | chr3_1:78566409-78566428 | Msa0377900:CDS | 30.0% | |
| TATATAGGTATAACACACGT+CGG | - | chr3_1:78566549-78566568 | Msa0377900:CDS | 30.0% | |
| AATGTGTGCAAGTTCCAAAA+TGG | + | chr3_1:78565162-78565181 | None:intergenic | 35.0% | |
| !! | CATTTTGAGAACAGCAACAA+GGG | + | chr3_1:78565201-78565220 | None:intergenic | 35.0% |
| !! | TCATTTTGAGAACAGCAACA+AGG | + | chr3_1:78565202-78565221 | None:intergenic | 35.0% |
| !! | TGAAAGTACCTGAAGCTATA+TGG | - | chr3_1:78565219-78565238 | Msa0377900:intron | 35.0% |
| AACTATGGAGAGAATTTGAG+AGG | + | chr3_1:78565273-78565292 | None:intergenic | 35.0% | |
| CTCAGCAAAAATAGCATAAG+TGG | + | chr3_1:78565351-78565370 | None:intergenic | 35.0% | |
| !!! | CACTTATGCTATTTTTGCTG+AGG | - | chr3_1:78565349-78565368 | Msa0377900:intron | 35.0% |
| GAGTGATAGTACCATATTCA+TGG | + | chr3_1:78565714-78565733 | None:intergenic | 35.0% | |
| TCCAACATTTCATTCATGTG+GGG | + | chr3_1:78566154-78566173 | None:intergenic | 35.0% | |
| CTCCAACATTTCATTCATGT+GGG | + | chr3_1:78566155-78566174 | None:intergenic | 35.0% | |
| TCTCCAACATTTCATTCATG+TGG | + | chr3_1:78566156-78566175 | None:intergenic | 35.0% | |
| ! | GAAATGTTGGAGAAGTATGA+TGG | - | chr3_1:78566163-78566182 | Msa0377900:intron | 35.0% |
| TTGATGCCTTTGAGTATGTT+TGG | + | chr3_1:78566265-78566284 | None:intergenic | 35.0% | |
| !!! | TTTTTGGGTCACTACCATTT+TGG | - | chr3_1:78566350-78566369 | Msa0377900:CDS | 35.0% |
| ACAAATATTAGTGTACCAGG+AGG | - | chr3_1:78566412-78566431 | Msa0377900:CDS | 35.0% | |
| TTGTCTTGTGGCATGTATAT+AGG | - | chr3_1:78566534-78566553 | Msa0377900:CDS | 35.0% | |
| AATGTGTGCAAGTTCCAAAA+TGG | + | chr3_1:78565162-78565181 | None:intergenic | 35.0% | |
| !! | CATTTTGAGAACAGCAACAA+GGG | + | chr3_1:78565201-78565220 | None:intergenic | 35.0% |
| !! | TCATTTTGAGAACAGCAACA+AGG | + | chr3_1:78565202-78565221 | None:intergenic | 35.0% |
| !! | TGAAAGTACCTGAAGCTATA+TGG | - | chr3_1:78565219-78565238 | Msa0377900:intron | 35.0% |
| AACTATGGAGAGAATTTGAG+AGG | + | chr3_1:78565273-78565292 | None:intergenic | 35.0% | |
| CTCAGCAAAAATAGCATAAG+TGG | + | chr3_1:78565351-78565370 | None:intergenic | 35.0% | |
| !!! | CACTTATGCTATTTTTGCTG+AGG | - | chr3_1:78565349-78565368 | Msa0377900:intron | 35.0% |
| GAGTGATAGTACCATATTCA+TGG | + | chr3_1:78565714-78565733 | None:intergenic | 35.0% | |
| TCCAACATTTCATTCATGTG+GGG | + | chr3_1:78566154-78566173 | None:intergenic | 35.0% | |
| CTCCAACATTTCATTCATGT+GGG | + | chr3_1:78566155-78566174 | None:intergenic | 35.0% | |
| TCTCCAACATTTCATTCATG+TGG | + | chr3_1:78566156-78566175 | None:intergenic | 35.0% | |
| ! | GAAATGTTGGAGAAGTATGA+TGG | - | chr3_1:78566163-78566182 | Msa0377900:intron | 35.0% |
| TTGATGCCTTTGAGTATGTT+TGG | + | chr3_1:78566265-78566284 | None:intergenic | 35.0% | |
| !!! | TTTTTGGGTCACTACCATTT+TGG | - | chr3_1:78566350-78566369 | Msa0377900:CDS | 35.0% |
| ACAAATATTAGTGTACCAGG+AGG | - | chr3_1:78566412-78566431 | Msa0377900:CDS | 35.0% | |
| TTGTCTTGTGGCATGTATAT+AGG | - | chr3_1:78566534-78566553 | Msa0377900:CDS | 35.0% | |
| TAGCATAAGTGGTGAGCAAA+CGG | + | chr3_1:78565340-78565359 | None:intergenic | 40.0% | |
| AACAAGAGCTTTACCGATGT+CGG | + | chr3_1:78565411-78565430 | None:intergenic | 40.0% | |
| TAGGATAGACCATCATCATC+AGG | + | chr3_1:78565434-78565453 | None:intergenic | 40.0% | |
| !! | TTGTTTTACGCTTCCATGTC+TGG | - | chr3_1:78566118-78566137 | Msa0377900:intron | 40.0% |
| ! | GAGAAGTATGATGGCTTCAA+AGG | - | chr3_1:78566172-78566191 | Msa0377900:intron | 40.0% |
| ! | GTTGATGTTGGTGGAAATTC+TGG | - | chr3_1:78566208-78566227 | Msa0377900:intron | 40.0% |
| GGTGCAGAAGATATCATATC+AGG | + | chr3_1:78566298-78566317 | None:intergenic | 40.0% | |
| AAATTAGTCCGTGGACAAAC+TGG | + | chr3_1:78566454-78566473 | None:intergenic | 40.0% | |
| TGGGGATGCTATCTTTACTA+AGG | - | chr3_1:78566599-78566618 | Msa0377900:CDS | 40.0% | |
| TAGCATAAGTGGTGAGCAAA+CGG | + | chr3_1:78565340-78565359 | None:intergenic | 40.0% | |
| AACAAGAGCTTTACCGATGT+CGG | + | chr3_1:78565411-78565430 | None:intergenic | 40.0% | |
| TAGGATAGACCATCATCATC+AGG | + | chr3_1:78565434-78565453 | None:intergenic | 40.0% | |
| !! | TTGTTTTACGCTTCCATGTC+TGG | - | chr3_1:78566118-78566137 | Msa0377900:intron | 40.0% |
| ! | GAGAAGTATGATGGCTTCAA+AGG | - | chr3_1:78566172-78566191 | Msa0377900:intron | 40.0% |
| ! | GTTGATGTTGGTGGAAATTC+TGG | - | chr3_1:78566208-78566227 | Msa0377900:intron | 40.0% |
| GGTGCAGAAGATATCATATC+AGG | + | chr3_1:78566298-78566317 | None:intergenic | 40.0% | |
| AAATTAGTCCGTGGACAAAC+TGG | + | chr3_1:78566454-78566473 | None:intergenic | 40.0% | |
| TGGGGATGCTATCTTTACTA+AGG | - | chr3_1:78566599-78566618 | Msa0377900:CDS | 40.0% | |
| GGAGAATGGGAAAGTTCATG+TGG | - | chr3_1:78565109-78565128 | Msa0377900:CDS | 45.0% | |
| TAAAGCCTCAAAGTGAAGCG+AGG | - | chr3_1:78565132-78565151 | Msa0377900:CDS | 45.0% | |
| GTACCTGAAGCTATATGGCA+AGG | - | chr3_1:78565224-78565243 | Msa0377900:intron | 45.0% | |
| AGAATTTGAGAGGCAGAGAG+TGG | + | chr3_1:78565263-78565282 | None:intergenic | 45.0% | |
| CTCTCCATAGTTCATCCCAA+CGG | - | chr3_1:78565281-78565300 | Msa0377900:intron | 45.0% | |
| ACTTGAGCAGCAATGGCAAA+AGG | - | chr3_1:78565372-78565391 | Msa0377900:intron | 45.0% | |
| ! | GCTCTTGTTCCTGATGATGA+TGG | - | chr3_1:78565422-78565441 | Msa0377900:CDS | 45.0% |
| GCCCCACATGAATGAAATGT+TGG | - | chr3_1:78566150-78566169 | Msa0377900:intron | 45.0% | |
| GTATGATGGCTTCAAAGGTG+TGG | - | chr3_1:78566177-78566196 | Msa0377900:intron | 45.0% | |
| ! | GTGGAGACTCTAGTTGATGT+TGG | - | chr3_1:78566196-78566215 | Msa0377900:intron | 45.0% |
| ! | GAGACTCTAGTTGATGTTGG+TGG | - | chr3_1:78566199-78566218 | Msa0377900:intron | 45.0% |
| CCACTAATAATACAGCCTCC+TGG | + | chr3_1:78566430-78566449 | None:intergenic | 45.0% | |
| CCAGGAGGCTGTATTATTAG+TGG | - | chr3_1:78566427-78566446 | Msa0377900:CDS | 45.0% | |
| ! | TTAGTGGACCAGTTTGTCCA+CGG | - | chr3_1:78566443-78566462 | Msa0377900:CDS | 45.0% |
| ATAGGTATAACACACGTCGG+TGG | - | chr3_1:78566552-78566571 | Msa0377900:CDS | 45.0% | |
| TGATGCGCTTGAATCAGTTC+CGG | - | chr3_1:78566575-78566594 | Msa0377900:CDS | 45.0% | |
| GGAGAATGGGAAAGTTCATG+TGG | - | chr3_1:78565109-78565128 | Msa0377900:CDS | 45.0% | |
| TAAAGCCTCAAAGTGAAGCG+AGG | - | chr3_1:78565132-78565151 | Msa0377900:CDS | 45.0% | |
| GTACCTGAAGCTATATGGCA+AGG | - | chr3_1:78565224-78565243 | Msa0377900:intron | 45.0% | |
| AGAATTTGAGAGGCAGAGAG+TGG | + | chr3_1:78565263-78565282 | None:intergenic | 45.0% | |
| CTCTCCATAGTTCATCCCAA+CGG | - | chr3_1:78565281-78565300 | Msa0377900:intron | 45.0% | |
| ACTTGAGCAGCAATGGCAAA+AGG | - | chr3_1:78565372-78565391 | Msa0377900:intron | 45.0% | |
| ! | GCTCTTGTTCCTGATGATGA+TGG | - | chr3_1:78565422-78565441 | Msa0377900:CDS | 45.0% |
| GCCCCACATGAATGAAATGT+TGG | - | chr3_1:78566150-78566169 | Msa0377900:intron | 45.0% | |
| GTATGATGGCTTCAAAGGTG+TGG | - | chr3_1:78566177-78566196 | Msa0377900:intron | 45.0% | |
| ! | GTGGAGACTCTAGTTGATGT+TGG | - | chr3_1:78566196-78566215 | Msa0377900:intron | 45.0% |
| ! | GAGACTCTAGTTGATGTTGG+TGG | - | chr3_1:78566199-78566218 | Msa0377900:intron | 45.0% |
| CCACTAATAATACAGCCTCC+TGG | + | chr3_1:78566430-78566449 | None:intergenic | 45.0% | |
| CCAGGAGGCTGTATTATTAG+TGG | - | chr3_1:78566427-78566446 | Msa0377900:CDS | 45.0% | |
| ! | TTAGTGGACCAGTTTGTCCA+CGG | - | chr3_1:78566443-78566462 | Msa0377900:CDS | 45.0% |
| ATAGGTATAACACACGTCGG+TGG | - | chr3_1:78566552-78566571 | Msa0377900:CDS | 45.0% | |
| TGATGCGCTTGAATCAGTTC+CGG | - | chr3_1:78566575-78566594 | Msa0377900:CDS | 45.0% | |
| !! | TGAAGCGAGGCTTGCCATTT+TGG | - | chr3_1:78565145-78565164 | Msa0377900:CDS | 50.0% |
| AGAACAGCAACAAGGGACGT+AGG | + | chr3_1:78565194-78565213 | None:intergenic | 50.0% | |
| CCACCTTGCCATATAGCTTC+AGG | + | chr3_1:78565230-78565249 | None:intergenic | 50.0% | |
| CCTGAAGCTATATGGCAAGG+TGG | - | chr3_1:78565227-78565246 | Msa0377900:intron | 50.0% | |
| TCCATAGTTCATCCCAACGG+CGG | - | chr3_1:78565284-78565303 | Msa0377900:intron | 50.0% | |
| CATAAGTGGTGAGCAAACGG+AGG | + | chr3_1:78565337-78565356 | None:intergenic | 50.0% | |
| AAGTACTCCCTCACCGACAT+CGG | - | chr3_1:78565395-78565414 | Msa0377900:intron | 50.0% | |
| AGCTTTACCGATGTCGGTGA+GGG | + | chr3_1:78565405-78565424 | None:intergenic | 50.0% | |
| CTGGAGCACGTATGTTGCAT+AGG | + | chr3_1:78565453-78565472 | None:intergenic | 50.0% | |
| ATACGTGCTCCAGCACTATC+AGG | - | chr3_1:78565460-78565479 | Msa0377900:CDS | 50.0% | |
| TCCACTGCATCTCCTACCAA+CGG | + | chr3_1:78566016-78566035 | None:intergenic | 50.0% | |
| GAACCGTTCGAGAAGCTACA+CGG | - | chr3_1:78566049-78566068 | Msa0377900:intron | 50.0% | |
| TCTCCGTGTAGCTTCTCGAA+CGG | + | chr3_1:78566055-78566074 | None:intergenic | 50.0% | |
| TTCGAGAAGCTACACGGAGA+AGG | - | chr3_1:78566055-78566074 | Msa0377900:intron | 50.0% | |
| !! | GGGCATTGACAATCCAGACA+TGG | + | chr3_1:78566134-78566153 | None:intergenic | 50.0% |
| TCTTCTGCACCTCAATTGCC+AGG | - | chr3_1:78566307-78566326 | Msa0377900:CDS | 50.0% | |
| GTAAAGATAGCATCCCCAGC+CGG | + | chr3_1:78566597-78566616 | None:intergenic | 50.0% | |
| !! | TGAAGCGAGGCTTGCCATTT+TGG | - | chr3_1:78565145-78565164 | Msa0377900:CDS | 50.0% |
| AGAACAGCAACAAGGGACGT+AGG | + | chr3_1:78565194-78565213 | None:intergenic | 50.0% | |
| CCACCTTGCCATATAGCTTC+AGG | + | chr3_1:78565230-78565249 | None:intergenic | 50.0% | |
| CCTGAAGCTATATGGCAAGG+TGG | - | chr3_1:78565227-78565246 | Msa0377900:intron | 50.0% | |
| TCCATAGTTCATCCCAACGG+CGG | - | chr3_1:78565284-78565303 | Msa0377900:intron | 50.0% | |
| CATAAGTGGTGAGCAAACGG+AGG | + | chr3_1:78565337-78565356 | None:intergenic | 50.0% | |
| AAGTACTCCCTCACCGACAT+CGG | - | chr3_1:78565395-78565414 | Msa0377900:intron | 50.0% | |
| AGCTTTACCGATGTCGGTGA+GGG | + | chr3_1:78565405-78565424 | None:intergenic | 50.0% | |
| CTGGAGCACGTATGTTGCAT+AGG | + | chr3_1:78565453-78565472 | None:intergenic | 50.0% | |
| ATACGTGCTCCAGCACTATC+AGG | - | chr3_1:78565460-78565479 | Msa0377900:CDS | 50.0% | |
| TCCACTGCATCTCCTACCAA+CGG | + | chr3_1:78566016-78566035 | None:intergenic | 50.0% | |
| GAACCGTTCGAGAAGCTACA+CGG | - | chr3_1:78566049-78566068 | Msa0377900:intron | 50.0% | |
| TCTCCGTGTAGCTTCTCGAA+CGG | + | chr3_1:78566055-78566074 | None:intergenic | 50.0% | |
| TTCGAGAAGCTACACGGAGA+AGG | - | chr3_1:78566055-78566074 | Msa0377900:intron | 50.0% | |
| !! | GGGCATTGACAATCCAGACA+TGG | + | chr3_1:78566134-78566153 | None:intergenic | 50.0% |
| TCTTCTGCACCTCAATTGCC+AGG | - | chr3_1:78566307-78566326 | Msa0377900:CDS | 50.0% | |
| GTAAAGATAGCATCCCCAGC+CGG | + | chr3_1:78566597-78566616 | None:intergenic | 50.0% | |
| GCAAGCCTCGCTTCACTTTG+AGG | + | chr3_1:78565140-78565159 | None:intergenic | 55.0% | |
| TCCGCCGTTGGGATGAACTA+TGG | + | chr3_1:78565288-78565307 | None:intergenic | 55.0% | |
| ATAGTTCATCCCAACGGCGG+AGG | - | chr3_1:78565287-78565306 | Msa0377900:intron | 55.0% | |
| GCTGAGGACTTGAGCAGCAA+TGG | - | chr3_1:78565365-78565384 | Msa0377900:intron | 55.0% | |
| GAGCTTTACCGATGTCGGTG+AGG | + | chr3_1:78565406-78565425 | None:intergenic | 55.0% | |
| ! | GTTGGTAGGAGATGCAGTGG+AGG | - | chr3_1:78566015-78566034 | Msa0377900:intron | 55.0% |
| TGCAGTGGAGGATGCATCTG+TGG | - | chr3_1:78566027-78566046 | Msa0377900:intron | 55.0% | |
| CGCTTGAATCAGTTCCGGCT+GGG | - | chr3_1:78566580-78566599 | Msa0377900:CDS | 55.0% | |
| GCTTGAATCAGTTCCGGCTG+GGG | - | chr3_1:78566581-78566600 | Msa0377900:CDS | 55.0% | |
| GCAAGCCTCGCTTCACTTTG+AGG | + | chr3_1:78565140-78565159 | None:intergenic | 55.0% | |
| TCCGCCGTTGGGATGAACTA+TGG | + | chr3_1:78565288-78565307 | None:intergenic | 55.0% | |
| ATAGTTCATCCCAACGGCGG+AGG | - | chr3_1:78565287-78565306 | Msa0377900:intron | 55.0% | |
| GCTGAGGACTTGAGCAGCAA+TGG | - | chr3_1:78565365-78565384 | Msa0377900:intron | 55.0% | |
| GAGCTTTACCGATGTCGGTG+AGG | + | chr3_1:78565406-78565425 | None:intergenic | 55.0% | |
| ! | GTTGGTAGGAGATGCAGTGG+AGG | - | chr3_1:78566015-78566034 | Msa0377900:intron | 55.0% |
| TGCAGTGGAGGATGCATCTG+TGG | - | chr3_1:78566027-78566046 | Msa0377900:intron | 55.0% | |
| CGCTTGAATCAGTTCCGGCT+GGG | - | chr3_1:78566580-78566599 | Msa0377900:CDS | 55.0% | |
| GCTTGAATCAGTTCCGGCTG+GGG | - | chr3_1:78566581-78566600 | Msa0377900:CDS | 55.0% | |
| AGGACCAGTACCTGCGAGCA+TGG | - | chr3_1:78565990-78566009 | Msa0377900:intron | 60.0% | |
| ! | GCCGTTGGTAGGAGATGCAG+TGG | - | chr3_1:78566012-78566031 | Msa0377900:intron | 60.0% |
| GCGCTTGAATCAGTTCCGGC+TGG | - | chr3_1:78566579-78566598 | Msa0377900:CDS | 60.0% | |
| AGGACCAGTACCTGCGAGCA+TGG | - | chr3_1:78565990-78566009 | Msa0377900:intron | 60.0% | |
| ! | GCCGTTGGTAGGAGATGCAG+TGG | - | chr3_1:78566012-78566031 | Msa0377900:intron | 60.0% |
| GCGCTTGAATCAGTTCCGGC+TGG | - | chr3_1:78566579-78566598 | Msa0377900:CDS | 60.0% | |
| TCAGCGTCTCCTCCGCCGTT+GGG | + | chr3_1:78565299-78565318 | None:intergenic | 65.0% | |
| TTCAGCGTCTCCTCCGCCGT+TGG | + | chr3_1:78565300-78565319 | None:intergenic | 65.0% | |
| ACGGCCATGCTCGCAGGTAC+TGG | + | chr3_1:78565997-78566016 | None:intergenic | 65.0% | |
| GTACCTGCGAGCATGGCCGT+TGG | - | chr3_1:78565997-78566016 | Msa0377900:intron | 65.0% | |
| CTACCAACGGCCATGCTCGC+AGG | + | chr3_1:78566003-78566022 | None:intergenic | 65.0% | |
| CTGCGAGCATGGCCGTTGGT+AGG | - | chr3_1:78566001-78566020 | Msa0377900:intron | 65.0% | |
| TCAGCGTCTCCTCCGCCGTT+GGG | + | chr3_1:78565299-78565318 | None:intergenic | 65.0% | |
| TTCAGCGTCTCCTCCGCCGT+TGG | + | chr3_1:78565300-78565319 | None:intergenic | 65.0% | |
| ACGGCCATGCTCGCAGGTAC+TGG | + | chr3_1:78565997-78566016 | None:intergenic | 65.0% | |
| GTACCTGCGAGCATGGCCGT+TGG | - | chr3_1:78565997-78566016 | Msa0377900:intron | 65.0% | |
| CTACCAACGGCCATGCTCGC+AGG | + | chr3_1:78566003-78566022 | None:intergenic | 65.0% | |
| CTGCGAGCATGGCCGTTGGT+AGG | - | chr3_1:78566001-78566020 | Msa0377900:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 78565107 | 78566641 | 78565107 | ID=Msa0377900;Name=Msa0377900 |
| chr3_1 | mRNA | 78565107 | 78566641 | 78565107 | ID=Msa0377900-mRNA-1;Parent=Msa0377900;Name=Msa0377900-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0|0|0|1|1|1|3|0|266 |
| chr3_1 | exon | 78566267 | 78566641 | 78566267 | ID=Msa0377900-mRNA-1:exon:18934;Parent=Msa0377900-mRNA-1 |
| chr3_1 | exon | 78565420 | 78565756 | 78565420 | ID=Msa0377900-mRNA-1:exon:18933;Parent=Msa0377900-mRNA-1 |
| chr3_1 | exon | 78565107 | 78565192 | 78565107 | ID=Msa0377900-mRNA-1:exon:18932;Parent=Msa0377900-mRNA-1 |
| chr3_1 | CDS | 78566267 | 78566641 | 78566267 | ID=Msa0377900-mRNA-1:cds;Parent=Msa0377900-mRNA-1 |
| chr3_1 | CDS | 78565420 | 78565756 | 78565420 | ID=Msa0377900-mRNA-1:cds;Parent=Msa0377900-mRNA-1 |
| chr3_1 | CDS | 78565107 | 78565192 | 78565107 | ID=Msa0377900-mRNA-1:cds;Parent=Msa0377900-mRNA-1 |
| Gene Sequence |
| Protein sequence |
