AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0473820

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0473820 MtrunA17_Chr3g0130011 98.092 262 5 0 1 262 1 262 0.0 533
Msa0473820 MtrunA17_Chr3g0130061 87.023 262 34 0 1 262 1 262 2.82e-169 472
Msa0473820 MtrunA17_Chr2g0314271 55.118 254 113 1 10 263 7 259 2.26e-104 307
Msa0473820 MtrunA17_Chr3g0128011 37.200 250 151 3 14 259 72 319 9.08e-47 161
Msa0473820 MtrunA17_Chr8g0367451 34.553 246 153 4 20 259 35 278 1.54e-45 157
Msa0473820 MtrunA17_Chr7g0276411 32.927 246 157 3 20 259 21 264 2.94e-45 155
Msa0473820 MtrunA17_Chr5g0448091 37.450 251 150 4 14 259 17 265 4.27e-45 155
Msa0473820 MtrunA17_Chr8g0367441 35.366 246 151 4 20 259 36 279 6.64e-45 155
Msa0473820 MtrunA17_Chr1g0200491 38.235 272 148 8 2 259 9 274 1.93e-44 154
Msa0473820 MtrunA17_Chr7g0218181 38.000 250 142 5 17 259 26 269 7.71e-44 152
Msa0473820 MtrunA17_Chr7g0218131 37.828 267 154 7 2 259 9 272 1.52e-43 151
Msa0473820 MtrunA17_Chr8g0367491 33.333 249 158 4 17 259 32 278 1.59e-43 151
Msa0473820 MtrunA17_Chr7g0218211 36.466 266 159 6 2 259 8 271 2.99e-43 150
Msa0473820 MtrunA17_Chr8g0367501 33.333 252 160 4 14 259 16 265 3.14e-42 149
Msa0473820 MtrunA17_Chr7g0218261 35.821 268 159 8 2 260 8 271 5.92e-41 144
Msa0473820 MtrunA17_Chr1g0163611 35.496 262 155 9 9 260 15 272 1.75e-40 143
Msa0473820 MtrunA17_Chr1g0163601 34.866 261 158 7 9 260 15 272 8.74e-40 141
Msa0473820 MtrunA17_Chr7g0218271 34.317 271 165 6 2 260 9 278 9.55e-40 141
Msa0473820 MtrunA17_Chr2g0307521 35.361 263 161 6 3 259 6 265 1.84e-39 140
Msa0473820 MtrunA17_Chr8g0367381 34.553 246 134 5 20 259 36 260 4.19e-39 139
Msa0473820 MtrunA17_Chr7g0276401 33.209 268 168 4 1 259 12 277 1.88e-38 138
Msa0473820 MtrunA17_Chr1g0163621 35.385 260 158 6 9 260 29 286 2.75e-38 138
Msa0473820 MtrunA17_Chr7g0218301 39.378 193 111 3 73 260 87 278 5.95e-38 137
Msa0473820 MtrunA17_Chr3g0085201 36.032 247 139 6 29 262 23 263 3.77e-36 131
Msa0473820 MtrunA17_Chr3g0085211 38.889 198 112 4 71 262 82 276 3.08e-35 129
Msa0473820 MtrunA17_Chr4g0022021 33.333 258 162 6 8 259 17 270 1.13e-34 128
Msa0473820 MtrunA17_Chr4g0021981 32.946 258 163 6 8 259 17 270 6.89e-33 123
Msa0473820 MtrunA17_Chr8g0345851 38.182 165 100 2 95 259 30 192 5.73e-31 116
Msa0473820 MtrunA17_Chr8g0367401 47.321 112 58 1 150 261 2 112 2.69e-29 108
Msa0473820 MtrunA17_Chr6g0482291 55.172 87 38 1 173 259 1 86 1.78e-26 101
Msa0473820 MtrunA17_Chr3g0121301 30.213 235 150 8 32 262 40 264 4.95e-23 96.7
Msa0473820 MtrunA17_Chr1g0170941 55.844 77 33 1 181 257 1 76 2.13e-22 88.2
Msa0473820 MtrunA17_Chr4g0014561 31.174 247 153 9 24 259 23 263 4.55e-20 88.2
Msa0473820 MtrunA17_Chr4g0014681 30.769 247 154 9 24 259 23 263 4.65e-19 85.5
Msa0473820 MtrunA17_Chr5g0432251 27.155 232 161 5 31 259 32 258 5.48e-19 85.1
Msa0473820 MtrunA17_Chr1g0188371 26.582 237 162 7 29 259 30 260 1.37e-18 84.3
Msa0473820 MtrunA17_Chr5g0432241 27.481 262 176 9 2 259 8 259 2.78e-18 83.2
Msa0473820 MtrunA17_Chr1g0188391 27.615 239 155 9 31 259 32 262 1.10e-17 81.6
Msa0473820 MtrunA17_Chr7g0219161 28.632 234 155 7 31 259 32 258 1.15e-17 81.6
Msa0473820 MtrunA17_Chr5g0432301 27.099 262 177 9 2 259 8 259 1.59e-17 81.3
Msa0473820 MtrunA17_Chr8g0367421 36.607 112 53 1 150 261 2 95 2.33e-17 76.3
Msa0473820 MtrunA17_Chr4g0014641 29.412 238 153 8 31 259 32 263 3.29e-17 80.1
Msa0473820 MtrunA17_Chr8g0367471 55.738 61 26 1 181 241 9 68 5.23e-17 74.3
Msa0473820 MtrunA17_Chr4g0040621 29.231 260 164 10 12 259 18 269 6.36e-17 79.3
Msa0473820 MtrunA17_Chr7g0219141 28.692 237 157 7 31 262 32 261 1.16e-16 78.6
Msa0473820 MtrunA17_Chr4g0046361 28.870 239 157 9 31 262 32 264 4.73e-16 77.0
Msa0473820 MtrunA17_Chr7g0223241 28.033 239 147 9 29 259 29 250 1.09e-15 75.9
Msa0473820 MtrunA17_Chr7g0223231 27.917 240 146 9 29 259 29 250 2.61e-15 74.7
Msa0473820 MtrunA17_Chr5g0432211 25.692 253 166 8 8 259 13 244 1.86e-13 69.3
Msa0473820 MtrunA17_Chr4g0046341 29.752 242 154 8 31 262 32 267 3.05e-13 68.9
Msa0473820 MtrunA17_Chr4g0046531 27.426 237 162 7 29 262 30 259 7.39e-12 65.1
Msa0473820 MtrunA17_Chr4g0046531 25.620 242 160 7 29 262 392 621 4.01e-11 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0473820 AT3G53140.1 53.906 256 114 1 12 263 9 264 9.38e-96 285
Msa0473820 AT5G54160.1 40.400 250 141 5 14 259 18 263 1.49e-50 170
Msa0473820 AT1G51990.1 33.649 211 135 2 53 259 54 263 2.84e-36 132
Msa0473820 AT1G33030.3 35.772 246 150 6 23 261 10 254 3.51e-36 130
Msa0473820 AT1G33030.2 35.223 247 152 6 23 262 10 255 5.77e-36 129
Msa0473820 AT1G51990.2 34.123 211 134 2 53 259 54 263 1.24e-35 130
Msa0473820 AT1G33030.1 35.246 244 150 6 23 259 10 252 2.83e-34 127
Msa0473820 AT1G77520.1 31.727 249 157 5 22 259 36 282 1.19e-33 125
Msa0473820 AT5G53810.1 33.197 244 147 8 29 259 39 279 1.23e-25 104
Msa0473820 AT1G77530.1 34.000 250 150 7 22 259 36 282 1.89e-25 103
Msa0473820 AT1G63140.1 32.143 252 158 7 21 261 55 304 3.20e-25 102
Msa0473820 AT1G21100.1 33.333 261 161 8 8 259 18 274 4.51e-24 100
Msa0473820 AT1G21130.2 33.080 263 163 8 8 261 18 276 6.16e-24 98.2
Msa0473820 AT1G63140.2 31.600 250 158 7 21 259 35 282 1.11e-23 99.0
Msa0473820 AT1G21120.1 33.462 260 162 8 8 259 18 274 1.22e-23 98.6
Msa0473820 AT1G63140.4 31.600 250 158 7 21 259 55 302 1.37e-23 99.0
Msa0473820 AT1G21120.2 33.462 260 162 8 8 259 66 322 2.89e-23 98.2
Msa0473820 AT5G37170.2 50.000 94 45 2 167 259 43 135 2.42e-22 92.8
Msa0473820 AT4G35160.1 30.112 269 176 6 1 262 15 278 2.45e-22 95.1
Msa0473820 AT1G21130.1 32.567 261 163 8 8 259 18 274 2.53e-22 95.1
Msa0473820 AT1G76790.1 31.660 259 162 7 12 259 12 266 2.93e-22 94.7
Msa0473820 AT1G21110.1 32.308 260 165 7 8 259 18 274 8.04e-22 93.6
Msa0473820 AT5G37170.1 50.000 94 45 2 167 259 143 235 8.88e-22 93.2
Msa0473820 AT5G37170.3 52.273 88 40 2 173 259 1 87 1.73e-21 89.4
Msa0473820 AT1G62900.1 47.826 92 47 1 168 259 16 106 2.50e-18 81.3
Msa0473820 AT4G35150.1 26.996 263 149 6 1 262 1 221 3.31e-18 83.2
Msa0473820 AT1G77530.2 31.878 229 141 7 22 238 36 261 1.07e-16 78.2
Msa0473820 AT1G63140.3 29.565 230 147 7 21 238 55 281 2.03e-14 72.0

Find 87 sgRNAs with CRISPR-Local

Find 258 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGAAGCGAGGCTTGCCATTT+TGG 0.196493 3_3:-76540012 Msa0473820:CDS
GTTGATGTTGGTGGCAATTC+TGG 0.233978 3_3:-76538972 Msa0473820:CDS
TGAAAATACCCGAAGCTATA+TGG 0.308849 3_3:-76539938 Msa0473820:CDS
TCCGCCATTGGGACGGACTA+TGG 0.310272 3_3:+76539872 None:intergenic
TAAAACAAACTCATTTCTTC+TGG 0.323627 3_3:+76539077 None:intergenic
TCCACCTTGCCATATAGCTT+CGG 0.328569 3_3:+76539929 None:intergenic
TGGAGATGCTATCTTCATTA+AGG 0.373040 3_3:-76538616 Msa0473820:CDS
TTGATGCCTTTGAGTATGTT+TGG 0.379016 3_3:+76538918 None:intergenic
CCACCTTGCCATATAGCTTC+GGG 0.392994 3_3:+76539930 None:intergenic
GCAAGCCTCGCTTCACTTTG+AGG 0.394145 3_3:+76540020 None:intergenic
AGTAGTGTGATGGATGTAAT+TGG 0.395438 3_3:+76540281 None:intergenic
AACAAATTAGTAAACAATAA+TGG 0.397360 3_3:-76540069 Msa0473820:exon
TTCAGCGTCTCCTCCGCCAT+TGG 0.420478 3_3:+76539860 None:intergenic
TTATTTAAACCTGATGGTGC+TGG 0.448459 3_3:+76539688 None:intergenic
AACGGCCATGCTCGCAGGTA+CGG 0.451973 3_3:+76539185 None:intergenic
TAGTAAACAATAATGGAGAA+TGG 0.453157 3_3:-76540062 Msa0473820:exon
AGTAAACAATAATGGAGAAT+GGG 0.454231 3_3:-76540061 Msa0473820:exon
TCAGCGTCTCCTCCGCCATT+GGG 0.454837 3_3:+76539861 None:intergenic
CCTGCGAGCATGGCCGTTGG+TGG 0.463499 3_3:-76539180 Msa0473820:CDS
AATGTGTGCAAGTTCCAAAA+TGG 0.463723 3_3:+76539998 None:intergenic
GAGAATTATGATGGCTTCAA+AGG 0.465146 3_3:-76539008 Msa0473820:CDS
TGATGCACTTGAATCAGTTC+CGG 0.476408 3_3:-76538640 Msa0473820:CDS
AGAATTTGAGAGGCAGAGAG+TGG 0.478385 3_3:+76539897 None:intergenic
CCACCAACGGCCATGCTCGC+AGG 0.480027 3_3:+76539180 None:intergenic
TAGTATAAGTGGTGAGCAAA+CGG 0.493082 3_3:+76539820 None:intergenic
GCATATGCATATTGCACAAA+GGG 0.496481 3_3:-76539101 Msa0473820:CDS
GAAATGTTGGAGAATTATGA+TGG 0.500624 3_3:-76539017 Msa0473820:CDS
ACGGCCATGCTCGCAGGTAC+GGG 0.509344 3_3:+76539186 None:intergenic
TCTTCTGCACCTCAATATCC+AGG 0.511364 3_3:-76538873 Msa0473820:intron
GAGAAGAGAGAGAAAGAGAG+TGG 0.514272 3_3:+76540607 None:intergenic
GACTAATTACCTGGATATTG+AGG 0.516427 3_3:+76538864 None:intergenic
AGGTGCAGAAGAGATCATAT+CGG 0.519685 3_3:+76538884 None:intergenic
TTCTCGAACGGTTCCACAGT+TGG 0.522298 3_3:+76539140 None:intergenic
TCCAACATTTCCCTCATGTA+GGG 0.523535 3_3:+76539029 None:intergenic
TCTCCGTGCAGCTTCTCGAA+CGG 0.525123 3_3:+76539128 None:intergenic
GCCCTACATGAGGGAAATGT+TGG 0.530544 3_3:-76539030 Msa0473820:CDS
CTGCGAGCATGGCCGTTGGT+GGG 0.530884 3_3:-76539179 Msa0473820:CDS
GGGCAATGACATCCCGGACA+TGG 0.544215 3_3:+76539049 None:intergenic
CAGGTCAGACCATCATCATC+GGG 0.545460 3_3:+76539726 None:intergenic
CGTCTCCTCCGCCATTGGGA+CGG 0.546520 3_3:+76539865 None:intergenic
GCTCTTGTTCCCGATGATGA+TGG 0.547808 3_3:-76539735 Msa0473820:CDS
AGAAAGTTTAAGATATAATG+AGG 0.552535 3_3:+76540314 None:intergenic
AGGACCCGTACCTGCGAGCA+TGG 0.558958 3_3:-76539190 Msa0473820:CDS
GCACTTGAATCAGTTCCGGC+TGG 0.561424 3_3:-76538636 Msa0473820:CDS
ACAATAAGACATGACGGCAA+GGG 0.562354 3_3:+76540566 None:intergenic
GACAATAAGACATGACGGCA+AGG 0.565083 3_3:+76540565 None:intergenic
GGTGCAGAAGAGATCATATC+GGG 0.566072 3_3:+76538885 None:intergenic
ACAGGTCAGACCATCATCAT+CGG 0.570773 3_3:+76539725 None:intergenic
CATGTAGGGCAATGACATCC+CGG 0.570892 3_3:+76539043 None:intergenic
GCCGTTGGTGGGAGACGCAG+TGG 0.570986 3_3:-76539168 Msa0473820:CDS
CTCCAACATTTCCCTCATGT+AGG 0.575549 3_3:+76539028 None:intergenic
TCCATAGTCCGTCCCAATGG+CGG 0.577664 3_3:-76539873 Msa0473820:CDS
ACTTGAGCAGCAATGGTGAA+AGG 0.580995 3_3:-76539785 Msa0473820:CDS
GTTGAGGACTTGAGCAGCAA+TGG 0.582872 3_3:-76539792 Msa0473820:CDS
AGCTTTACCGACATCGGTGA+GGG 0.585301 3_3:+76539755 None:intergenic
CTCTCCATAGTCCGTCCCAA+TGG 0.588927 3_3:-76539876 Msa0473820:CDS
AAGTACTCCCTCACCGATGT+CGG 0.589045 3_3:-76539762 Msa0473820:CDS
GTGGAGACTCTAGTTGATGT+TGG 0.592031 3_3:-76538984 Msa0473820:CDS
GTTGGTGGGAGACGCAGTGG+AGG 0.598693 3_3:-76539165 Msa0473820:CDS
GGATGTCATTGCCCTACATG+AGG 0.599139 3_3:-76539040 Msa0473820:CDS
AAATATCCAAACATACTCAA+AGG 0.599530 3_3:-76538924 Msa0473820:CDS
ATAATAGATATATGTACATG+TGG 0.600609 3_3:-76540491 Msa0473820:five_prime_UTR
ATAGTCCGTCCCAATGGCGG+AGG 0.606262 3_3:-76539870 Msa0473820:CDS
AACAAGAGCTTTACCGACAT+CGG 0.606967 3_3:+76539749 None:intergenic
TCCACTGCGTCTCCCACCAA+CGG 0.608024 3_3:+76539167 None:intergenic
TTATGATGGCTTCAAAGGTG+TGG 0.610913 3_3:-76539003 Msa0473820:CDS
CAATAAGACATGACGGCAAG+GGG 0.611700 3_3:+76540567 None:intergenic
GTAATAGATGAGTAGTGTGA+TGG 0.613072 3_3:+76540271 None:intergenic
ATGAAGATAGCATCTCCAGC+CGG 0.613987 3_3:+76538621 None:intergenic
GATGTCATTGCCCTACATGA+GGG 0.616477 3_3:-76539039 Msa0473820:CDS
GACTATGGAGAGAATTTGAG+AGG 0.637733 3_3:+76539887 None:intergenic
AGCATATGCATATTGCACAA+AGG 0.638121 3_3:-76539102 Msa0473820:CDS
AGTAAGACAATAAGACATGA+CGG 0.640277 3_3:+76540560 None:intergenic
GAACCGTTCGAGAAGCTGCA+CGG 0.649830 3_3:-76539131 Msa0473820:CDS
GTACCTGCGAGCATGGCCGT+TGG 0.655083 3_3:-76539183 Msa0473820:CDS
ATACCCGAAGCTATATGGCA+AGG 0.657615 3_3:-76539933 Msa0473820:CDS
GAGCTTTACCGACATCGGTG+AGG 0.661236 3_3:+76539754 None:intergenic
TGAGCAAACGGAGGATACGT+TGG 0.661794 3_3:+76539832 None:intergenic
GAGACTCTAGTTGATGTTGG+TGG 0.662906 3_3:-76538981 Msa0473820:CDS
GGAGAATGGGAAAGTTGCTG+TGG 0.664770 3_3:-76540048 Msa0473820:CDS
AGAACAGCATTAAGGGACGT+AGG 0.670135 3_3:+76539966 None:intergenic
CGCAGTGGAGGATCCAACTG+TGG 0.674969 3_3:-76539153 Msa0473820:CDS
CCCGAAGCTATATGGCAAGG+TGG 0.684266 3_3:-76539930 Msa0473820:CDS
TAAAGCCTCAAAGTGAAGCG+AGG 0.698513 3_3:-76540025 Msa0473820:CDS
TATAAGTGGTGAGCAAACGG+AGG 0.715321 3_3:+76539823 None:intergenic
TATATAGGTATAACACACGT+CGG 0.727621 3_3:-76538666 Msa0473820:intron
ATAGGTATAACACACGTCGG+TGG 0.737739 3_3:-76538663 Msa0473820:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAATTAAAAATTCTCA+AGG - chr3_3:76538881-76538900 Msa0473820:CDS 10.0%
!! ACAGTTATTATAATTATTAT+TGG - chr3_3:76539689-76539708 Msa0473820:intron 10.0%
!! CAGTTATTATAATTATTATT+GGG - chr3_3:76539690-76539709 Msa0473820:intron 10.0%
!!! TTTTTTAAATTAGACTAATT+AGG + chr3_3:76540408-76540427 None:intergenic 10.0%
!! AAAAAAATTAAAAATTCTCA+AGG - chr3_3:76538881-76538900 Msa0473820:CDS 10.0%
!! ACAGTTATTATAATTATTAT+TGG - chr3_3:76539689-76539708 Msa0473820:intron 10.0%
!! CAGTTATTATAATTATTATT+GGG - chr3_3:76539690-76539709 Msa0473820:intron 10.0%
!!! TTTTTTAAATTAGACTAATT+AGG + chr3_3:76540408-76540427 None:intergenic 10.0%
!! AACAAATTAGTAAACAATAA+TGG - chr3_3:76539149-76539168 Msa0473820:CDS 15.0%
!! AAGAAGAAAAAAAAGATTAA+TGG - chr3_3:76539648-76539667 Msa0473820:intron 15.0%
!! AGAAGAAAAAAAAGATTAAT+GGG - chr3_3:76539649-76539668 Msa0473820:intron 15.0%
!!! TTCAATTTATTTAACTTTTG+TGG - chr3_3:76540525-76540544 Msa0473820:five_prime_UTR 15.0%
!! AACAAATTAGTAAACAATAA+TGG - chr3_3:76539149-76539168 Msa0473820:CDS 15.0%
!! AAGAAGAAAAAAAAGATTAA+TGG - chr3_3:76539648-76539667 Msa0473820:intron 15.0%
!! AGAAGAAAAAAAAGATTAAT+GGG - chr3_3:76539649-76539668 Msa0473820:intron 15.0%
!!! TTCAATTTATTTAACTTTTG+TGG - chr3_3:76540525-76540544 Msa0473820:five_prime_UTR 15.0%
!! ATAATAGATATATGTACATG+TGG - chr3_3:76538727-76538746 Msa0473820:intron 20.0%
!!! AGAAAGTTTAAGATATAATG+AGG + chr3_3:76538907-76538926 None:intergenic 20.0%
!!! GTTAAAAAGTTGTTTGAAAT+TGG + chr3_3:76538992-76539011 None:intergenic 20.0%
!! ATAAGTTTATTTAAACCTGA+TGG + chr3_3:76539539-76539558 None:intergenic 20.0%
!! GAAGAAAAAAAAGATTAATG+GGG - chr3_3:76539650-76539669 Msa0473820:intron 20.0%
!! TATAATAACTGTGTATTTGT+TGG + chr3_3:76539681-76539700 None:intergenic 20.0%
!!! TAATTTTGTGGAAATGAATA+TGG - chr3_3:76539731-76539750 Msa0473820:CDS 20.0%
!! TACAAAATCAACTTATAAGT+CGG + chr3_3:76539858-76539877 None:intergenic 20.0%
!!! ACGAACTTGTTATAATATAT+GGG + chr3_3:76539919-76539938 None:intergenic 20.0%
!!! AGGTAATTAGTCTATTTTTT+GGG - chr3_3:76540365-76540384 Msa0473820:five_prime_UTR 20.0%
!! AATTTAATAAAATTAGTCCG+TGG + chr3_3:76540485-76540504 None:intergenic 20.0%
!! ATAATAGATATATGTACATG+TGG - chr3_3:76538727-76538746 Msa0473820:intron 20.0%
!!! AGAAAGTTTAAGATATAATG+AGG + chr3_3:76538907-76538926 None:intergenic 20.0%
!!! GTTAAAAAGTTGTTTGAAAT+TGG + chr3_3:76538992-76539011 None:intergenic 20.0%
!! ATAAGTTTATTTAAACCTGA+TGG + chr3_3:76539539-76539558 None:intergenic 20.0%
!! GAAGAAAAAAAAGATTAATG+GGG - chr3_3:76539650-76539669 Msa0473820:intron 20.0%
!! TATAATAACTGTGTATTTGT+TGG + chr3_3:76539681-76539700 None:intergenic 20.0%
!!! TAATTTTGTGGAAATGAATA+TGG - chr3_3:76539731-76539750 Msa0473820:CDS 20.0%
!! TACAAAATCAACTTATAAGT+CGG + chr3_3:76539858-76539877 None:intergenic 20.0%
!!! ACGAACTTGTTATAATATAT+GGG + chr3_3:76539919-76539938 None:intergenic 20.0%
!!! AGGTAATTAGTCTATTTTTT+GGG - chr3_3:76540365-76540384 Msa0473820:five_prime_UTR 20.0%
!! AATTTAATAAAATTAGTCCG+TGG + chr3_3:76540485-76540504 None:intergenic 20.0%
!!! GTGGTTTTATGTTATTAACA+TGG - chr3_3:76538746-76538765 Msa0473820:intron 25.0%
! GCTATTTATAGAAAAACGAT+TGG + chr3_3:76539063-76539082 None:intergenic 25.0%
!! TAGTAAACAATAATGGAGAA+TGG - chr3_3:76539156-76539175 Msa0473820:CDS 25.0%
!! AGTAAACAATAATGGAGAAT+GGG - chr3_3:76539157-76539176 Msa0473820:CDS 25.0%
! CTCAACAAAAATAGTATAAG+TGG + chr3_3:76539412-76539431 None:intergenic 25.0%
!!! CACTTATACTATTTTTGTTG+AGG - chr3_3:76539410-76539429 Msa0473820:intron 25.0%
!!! ACTAAGAGTACTTAATTTTG+TGG - chr3_3:76539719-76539738 Msa0473820:CDS 25.0%
!!! CACGAACTTGTTATAATATA+TGG + chr3_3:76539920-76539939 None:intergenic 25.0%
! TCAAAAAAAATCAAACGTAC+AGG - chr3_3:76540008-76540027 Msa0473820:CDS 25.0%
! TAAAACAAACTCATTTCTTC+TGG + chr3_3:76540144-76540163 None:intergenic 25.0%
! AAATATCCAAACATACTCAA+AGG - chr3_3:76540294-76540313 Msa0473820:five_prime_UTR 25.0%
! CAAAAAATAGACTAATTACC+TGG + chr3_3:76540366-76540385 None:intergenic 25.0%
!!! CAGGTAATTAGTCTATTTTT+TGG - chr3_3:76540364-76540383 Msa0473820:five_prime_UTR 25.0%
! AGTTAGATTGACAAATATAG+AGG - chr3_3:76540432-76540451 Msa0473820:five_prime_UTR 25.0%
!!! GTGGTTTTATGTTATTAACA+TGG - chr3_3:76538746-76538765 Msa0473820:intron 25.0%
! GCTATTTATAGAAAAACGAT+TGG + chr3_3:76539063-76539082 None:intergenic 25.0%
!! TAGTAAACAATAATGGAGAA+TGG - chr3_3:76539156-76539175 Msa0473820:CDS 25.0%
!! AGTAAACAATAATGGAGAAT+GGG - chr3_3:76539157-76539176 Msa0473820:CDS 25.0%
! CTCAACAAAAATAGTATAAG+TGG + chr3_3:76539412-76539431 None:intergenic 25.0%
!!! CACTTATACTATTTTTGTTG+AGG - chr3_3:76539410-76539429 Msa0473820:intron 25.0%
!!! ACTAAGAGTACTTAATTTTG+TGG - chr3_3:76539719-76539738 Msa0473820:CDS 25.0%
!!! CACGAACTTGTTATAATATA+TGG + chr3_3:76539920-76539939 None:intergenic 25.0%
! TCAAAAAAAATCAAACGTAC+AGG - chr3_3:76540008-76540027 Msa0473820:CDS 25.0%
! TAAAACAAACTCATTTCTTC+TGG + chr3_3:76540144-76540163 None:intergenic 25.0%
! AAATATCCAAACATACTCAA+AGG - chr3_3:76540294-76540313 Msa0473820:five_prime_UTR 25.0%
! CAAAAAATAGACTAATTACC+TGG + chr3_3:76540366-76540385 None:intergenic 25.0%
!!! CAGGTAATTAGTCTATTTTT+TGG - chr3_3:76540364-76540383 Msa0473820:five_prime_UTR 25.0%
! AGTTAGATTGACAAATATAG+AGG - chr3_3:76540432-76540451 Msa0473820:five_prime_UTR 25.0%
AGTAAGACAATAAGACATGA+CGG + chr3_3:76538661-76538680 None:intergenic 30.0%
!! CATTTTGAGAACAGCATTAA+GGG + chr3_3:76539262-76539281 None:intergenic 30.0%
!! TCATTTTGAGAACAGCATTA+AGG + chr3_3:76539263-76539282 None:intergenic 30.0%
GAAATGTTGGAGAATTATGA+TGG - chr3_3:76540201-76540220 Msa0473820:five_prime_UTR 30.0%
AGACTAATTAGGTTCCAAAA+TGG + chr3_3:76540397-76540416 None:intergenic 30.0%
AACCAAAAAACTAACATGGT+CGG + chr3_3:76540459-76540478 None:intergenic 30.0%
GACAAACCAAAAAACTAACA+TGG + chr3_3:76540463-76540482 None:intergenic 30.0%
!!! TTAGTTTTTTGGTTTGTCCA+CGG - chr3_3:76540465-76540484 Msa0473820:five_prime_UTR 30.0%
! AACTTTTGTGGCATGTATAT+AGG - chr3_3:76540537-76540556 Msa0473820:five_prime_UTR 30.0%
TATATAGGTATAACACACGT+CGG - chr3_3:76540552-76540571 Msa0473820:five_prime_UTR 30.0%
AGTAAGACAATAAGACATGA+CGG + chr3_3:76538661-76538680 None:intergenic 30.0%
!! CATTTTGAGAACAGCATTAA+GGG + chr3_3:76539262-76539281 None:intergenic 30.0%
!! TCATTTTGAGAACAGCATTA+AGG + chr3_3:76539263-76539282 None:intergenic 30.0%
GAAATGTTGGAGAATTATGA+TGG - chr3_3:76540201-76540220 Msa0473820:five_prime_UTR 30.0%
AGACTAATTAGGTTCCAAAA+TGG + chr3_3:76540397-76540416 None:intergenic 30.0%
AACCAAAAAACTAACATGGT+CGG + chr3_3:76540459-76540478 None:intergenic 30.0%
GACAAACCAAAAAACTAACA+TGG + chr3_3:76540463-76540482 None:intergenic 30.0%
!!! TTAGTTTTTTGGTTTGTCCA+CGG - chr3_3:76540465-76540484 Msa0473820:five_prime_UTR 30.0%
! AACTTTTGTGGCATGTATAT+AGG - chr3_3:76540537-76540556 Msa0473820:five_prime_UTR 30.0%
TATATAGGTATAACACACGT+CGG - chr3_3:76540552-76540571 Msa0473820:five_prime_UTR 30.0%
!! AGTAGTGTGATGGATGTAAT+TGG + chr3_3:76538940-76538959 None:intergenic 35.0%
GTAATAGATGAGTAGTGTGA+TGG + chr3_3:76538950-76538969 None:intergenic 35.0%
! AAGATTGTGTGTTTTCAGCA+GGG + chr3_3:76539110-76539129 None:intergenic 35.0%
! AAAGATTGTGTGTTTTCAGC+AGG + chr3_3:76539111-76539130 None:intergenic 35.0%
AATGTGTGCAAGTTCCAAAA+TGG + chr3_3:76539223-76539242 None:intergenic 35.0%
TGAAAATACCCGAAGCTATA+TGG - chr3_3:76539280-76539299 Msa0473820:intron 35.0%
TAGTATAAGTGGTGAGCAAA+CGG + chr3_3:76539401-76539420 None:intergenic 35.0%
! TTATTTAAACCTGATGGTGC+TGG + chr3_3:76539533-76539552 None:intergenic 35.0%
AGCATATGCATATTGCACAA+AGG - chr3_3:76540116-76540135 Msa0473820:five_prime_UTR 35.0%
GCATATGCATATTGCACAAA+GGG - chr3_3:76540117-76540136 Msa0473820:five_prime_UTR 35.0%
!! TTGTTTTATGCTTCCATGTC+CGG - chr3_3:76540156-76540175 Msa0473820:five_prime_UTR 35.0%
GAGAATTATGATGGCTTCAA+AGG - chr3_3:76540210-76540229 Msa0473820:five_prime_UTR 35.0%
TTGATGCCTTTGAGTATGTT+TGG + chr3_3:76540303-76540322 None:intergenic 35.0%
GACTAATTACCTGGATATTG+AGG + chr3_3:76540357-76540376 None:intergenic 35.0%
!!! TTTTTGGGTCACTACCATTT+TGG - chr3_3:76540380-76540399 Msa0473820:five_prime_UTR 35.0%
TGGAGATGCTATCTTCATTA+AGG - chr3_3:76540602-76540621 Msa0473820:five_prime_UTR 35.0%
!! AGTAGTGTGATGGATGTAAT+TGG + chr3_3:76538940-76538959 None:intergenic 35.0%
GTAATAGATGAGTAGTGTGA+TGG + chr3_3:76538950-76538969 None:intergenic 35.0%
! AAGATTGTGTGTTTTCAGCA+GGG + chr3_3:76539110-76539129 None:intergenic 35.0%
! AAAGATTGTGTGTTTTCAGC+AGG + chr3_3:76539111-76539130 None:intergenic 35.0%
AATGTGTGCAAGTTCCAAAA+TGG + chr3_3:76539223-76539242 None:intergenic 35.0%
TGAAAATACCCGAAGCTATA+TGG - chr3_3:76539280-76539299 Msa0473820:intron 35.0%
TAGTATAAGTGGTGAGCAAA+CGG + chr3_3:76539401-76539420 None:intergenic 35.0%
! TTATTTAAACCTGATGGTGC+TGG + chr3_3:76539533-76539552 None:intergenic 35.0%
AGCATATGCATATTGCACAA+AGG - chr3_3:76540116-76540135 Msa0473820:five_prime_UTR 35.0%
GCATATGCATATTGCACAAA+GGG - chr3_3:76540117-76540136 Msa0473820:five_prime_UTR 35.0%
!! TTGTTTTATGCTTCCATGTC+CGG - chr3_3:76540156-76540175 Msa0473820:five_prime_UTR 35.0%
GAGAATTATGATGGCTTCAA+AGG - chr3_3:76540210-76540229 Msa0473820:five_prime_UTR 35.0%
TTGATGCCTTTGAGTATGTT+TGG + chr3_3:76540303-76540322 None:intergenic 35.0%
GACTAATTACCTGGATATTG+AGG + chr3_3:76540357-76540376 None:intergenic 35.0%
!!! TTTTTGGGTCACTACCATTT+TGG - chr3_3:76540380-76540399 Msa0473820:five_prime_UTR 35.0%
TGGAGATGCTATCTTCATTA+AGG - chr3_3:76540602-76540621 Msa0473820:five_prime_UTR 35.0%
ACAATAAGACATGACGGCAA+GGG + chr3_3:76538655-76538674 None:intergenic 40.0%
! AGATTGTGTGTTTTCAGCAG+GGG + chr3_3:76539109-76539128 None:intergenic 40.0%
GACTATGGAGAGAATTTGAG+AGG + chr3_3:76539334-76539353 None:intergenic 40.0%
AACAAGAGCTTTACCGACAT+CGG + chr3_3:76539472-76539491 None:intergenic 40.0%
! TGTTTTATGCTTCCATGTCC+GGG - chr3_3:76540157-76540176 Msa0473820:five_prime_UTR 40.0%
TCCAACATTTCCCTCATGTA+GGG + chr3_3:76540192-76540211 None:intergenic 40.0%
TTATGATGGCTTCAAAGGTG+TGG - chr3_3:76540215-76540234 Msa0473820:five_prime_UTR 40.0%
AGGTGCAGAAGAGATCATAT+CGG + chr3_3:76540337-76540356 None:intergenic 40.0%
!!! GACCGACCATGTTAGTTTTT+TGG - chr3_3:76540454-76540473 Msa0473820:five_prime_UTR 40.0%
TGATGCACTTGAATCAGTTC+CGG - chr3_3:76540578-76540597 Msa0473820:five_prime_UTR 40.0%
ACAATAAGACATGACGGCAA+GGG + chr3_3:76538655-76538674 None:intergenic 40.0%
! AGATTGTGTGTTTTCAGCAG+GGG + chr3_3:76539109-76539128 None:intergenic 40.0%
GACTATGGAGAGAATTTGAG+AGG + chr3_3:76539334-76539353 None:intergenic 40.0%
AACAAGAGCTTTACCGACAT+CGG + chr3_3:76539472-76539491 None:intergenic 40.0%
! TGTTTTATGCTTCCATGTCC+GGG - chr3_3:76540157-76540176 Msa0473820:five_prime_UTR 40.0%
TCCAACATTTCCCTCATGTA+GGG + chr3_3:76540192-76540211 None:intergenic 40.0%
TTATGATGGCTTCAAAGGTG+TGG - chr3_3:76540215-76540234 Msa0473820:five_prime_UTR 40.0%
AGGTGCAGAAGAGATCATAT+CGG + chr3_3:76540337-76540356 None:intergenic 40.0%
!!! GACCGACCATGTTAGTTTTT+TGG - chr3_3:76540454-76540473 Msa0473820:five_prime_UTR 40.0%
TGATGCACTTGAATCAGTTC+CGG - chr3_3:76540578-76540597 Msa0473820:five_prime_UTR 40.0%
GAGAAGAGAGAGAAAGAGAG+TGG + chr3_3:76538614-76538633 None:intergenic 45.0%
CAATAAGACATGACGGCAAG+GGG + chr3_3:76538654-76538673 None:intergenic 45.0%
GACAATAAGACATGACGGCA+AGG + chr3_3:76538656-76538675 None:intergenic 45.0%
TAAAGCCTCAAAGTGAAGCG+AGG - chr3_3:76539193-76539212 Msa0473820:intron 45.0%
AGAACAGCATTAAGGGACGT+AGG + chr3_3:76539255-76539274 None:intergenic 45.0%
ATACCCGAAGCTATATGGCA+AGG - chr3_3:76539285-76539304 Msa0473820:intron 45.0%
TCCACCTTGCCATATAGCTT+CGG + chr3_3:76539292-76539311 None:intergenic 45.0%
AGAATTTGAGAGGCAGAGAG+TGG + chr3_3:76539324-76539343 None:intergenic 45.0%
TATAAGTGGTGAGCAAACGG+AGG + chr3_3:76539398-76539417 None:intergenic 45.0%
ACTTGAGCAGCAATGGTGAA+AGG - chr3_3:76539433-76539452 Msa0473820:intron 45.0%
ACAGGTCAGACCATCATCAT+CGG + chr3_3:76539496-76539515 None:intergenic 45.0%
CTGGACGAAAAATGATGCAC+AGG + chr3_3:76539514-76539533 None:intergenic 45.0%
! ATTTTTCGTCCAGCACCATC+AGG - chr3_3:76539521-76539540 Msa0473820:intron 45.0%
GATGTCATTGCCCTACATGA+GGG - chr3_3:76540179-76540198 Msa0473820:five_prime_UTR 45.0%
CTCCAACATTTCCCTCATGT+AGG + chr3_3:76540193-76540212 None:intergenic 45.0%
! GTGGAGACTCTAGTTGATGT+TGG - chr3_3:76540234-76540253 Msa0473820:five_prime_UTR 45.0%
! GAGACTCTAGTTGATGTTGG+TGG - chr3_3:76540237-76540256 Msa0473820:five_prime_UTR 45.0%
!! GTTGATGTTGGTGGCAATTC+TGG - chr3_3:76540246-76540265 Msa0473820:five_prime_UTR 45.0%
GGTGCAGAAGAGATCATATC+GGG + chr3_3:76540336-76540355 None:intergenic 45.0%
TCTTCTGCACCTCAATATCC+AGG - chr3_3:76540345-76540364 Msa0473820:five_prime_UTR 45.0%
ATAGGTATAACACACGTCGG+TGG - chr3_3:76540555-76540574 Msa0473820:five_prime_UTR 45.0%
ATGAAGATAGCATCTCCAGC+CGG + chr3_3:76540600-76540619 None:intergenic 45.0%
GAGAAGAGAGAGAAAGAGAG+TGG + chr3_3:76538614-76538633 None:intergenic 45.0%
CAATAAGACATGACGGCAAG+GGG + chr3_3:76538654-76538673 None:intergenic 45.0%
GACAATAAGACATGACGGCA+AGG + chr3_3:76538656-76538675 None:intergenic 45.0%
TAAAGCCTCAAAGTGAAGCG+AGG - chr3_3:76539193-76539212 Msa0473820:intron 45.0%
AGAACAGCATTAAGGGACGT+AGG + chr3_3:76539255-76539274 None:intergenic 45.0%
ATACCCGAAGCTATATGGCA+AGG - chr3_3:76539285-76539304 Msa0473820:intron 45.0%
TCCACCTTGCCATATAGCTT+CGG + chr3_3:76539292-76539311 None:intergenic 45.0%
AGAATTTGAGAGGCAGAGAG+TGG + chr3_3:76539324-76539343 None:intergenic 45.0%
TATAAGTGGTGAGCAAACGG+AGG + chr3_3:76539398-76539417 None:intergenic 45.0%
ACTTGAGCAGCAATGGTGAA+AGG - chr3_3:76539433-76539452 Msa0473820:intron 45.0%
ACAGGTCAGACCATCATCAT+CGG + chr3_3:76539496-76539515 None:intergenic 45.0%
CTGGACGAAAAATGATGCAC+AGG + chr3_3:76539514-76539533 None:intergenic 45.0%
! ATTTTTCGTCCAGCACCATC+AGG - chr3_3:76539521-76539540 Msa0473820:intron 45.0%
GATGTCATTGCCCTACATGA+GGG - chr3_3:76540179-76540198 Msa0473820:five_prime_UTR 45.0%
CTCCAACATTTCCCTCATGT+AGG + chr3_3:76540193-76540212 None:intergenic 45.0%
! GTGGAGACTCTAGTTGATGT+TGG - chr3_3:76540234-76540253 Msa0473820:five_prime_UTR 45.0%
! GAGACTCTAGTTGATGTTGG+TGG - chr3_3:76540237-76540256 Msa0473820:five_prime_UTR 45.0%
!! GTTGATGTTGGTGGCAATTC+TGG - chr3_3:76540246-76540265 Msa0473820:five_prime_UTR 45.0%
GGTGCAGAAGAGATCATATC+GGG + chr3_3:76540336-76540355 None:intergenic 45.0%
TCTTCTGCACCTCAATATCC+AGG - chr3_3:76540345-76540364 Msa0473820:five_prime_UTR 45.0%
ATAGGTATAACACACGTCGG+TGG - chr3_3:76540555-76540574 Msa0473820:five_prime_UTR 45.0%
ATGAAGATAGCATCTCCAGC+CGG + chr3_3:76540600-76540619 None:intergenic 45.0%
GGAGAATGGGAAAGTTGCTG+TGG - chr3_3:76539170-76539189 Msa0473820:CDS 50.0%
!! TGAAGCGAGGCTTGCCATTT+TGG - chr3_3:76539206-76539225 Msa0473820:intron 50.0%
CCACCTTGCCATATAGCTTC+GGG + chr3_3:76539291-76539310 None:intergenic 50.0%
TGAGCAAACGGAGGATACGT+TGG + chr3_3:76539389-76539408 None:intergenic 50.0%
GTTGAGGACTTGAGCAGCAA+TGG - chr3_3:76539426-76539445 Msa0473820:intron 50.0%
AAGTACTCCCTCACCGATGT+CGG - chr3_3:76539456-76539475 Msa0473820:intron 50.0%
AGCTTTACCGACATCGGTGA+GGG + chr3_3:76539466-76539485 None:intergenic 50.0%
GCTCTTGTTCCCGATGATGA+TGG - chr3_3:76539483-76539502 Msa0473820:intron 50.0%
CAGGTCAGACCATCATCATC+GGG + chr3_3:76539495-76539514 None:intergenic 50.0%
TTCTCGAACGGTTCCACAGT+TGG + chr3_3:76540081-76540100 None:intergenic 50.0%
CATGTAGGGCAATGACATCC+CGG + chr3_3:76540178-76540197 None:intergenic 50.0%
GGATGTCATTGCCCTACATG+AGG - chr3_3:76540178-76540197 Msa0473820:five_prime_UTR 50.0%
GCCCTACATGAGGGAAATGT+TGG - chr3_3:76540188-76540207 Msa0473820:five_prime_UTR 50.0%
GGAGAATGGGAAAGTTGCTG+TGG - chr3_3:76539170-76539189 Msa0473820:CDS 50.0%
!! TGAAGCGAGGCTTGCCATTT+TGG - chr3_3:76539206-76539225 Msa0473820:intron 50.0%
CCACCTTGCCATATAGCTTC+GGG + chr3_3:76539291-76539310 None:intergenic 50.0%
TGAGCAAACGGAGGATACGT+TGG + chr3_3:76539389-76539408 None:intergenic 50.0%
GTTGAGGACTTGAGCAGCAA+TGG - chr3_3:76539426-76539445 Msa0473820:intron 50.0%
AAGTACTCCCTCACCGATGT+CGG - chr3_3:76539456-76539475 Msa0473820:intron 50.0%
AGCTTTACCGACATCGGTGA+GGG + chr3_3:76539466-76539485 None:intergenic 50.0%
GCTCTTGTTCCCGATGATGA+TGG - chr3_3:76539483-76539502 Msa0473820:intron 50.0%
CAGGTCAGACCATCATCATC+GGG + chr3_3:76539495-76539514 None:intergenic 50.0%
TTCTCGAACGGTTCCACAGT+TGG + chr3_3:76540081-76540100 None:intergenic 50.0%
CATGTAGGGCAATGACATCC+CGG + chr3_3:76540178-76540197 None:intergenic 50.0%
GGATGTCATTGCCCTACATG+AGG - chr3_3:76540178-76540197 Msa0473820:five_prime_UTR 50.0%
GCCCTACATGAGGGAAATGT+TGG - chr3_3:76540188-76540207 Msa0473820:five_prime_UTR 50.0%
GCAAGCCTCGCTTCACTTTG+AGG + chr3_3:76539201-76539220 None:intergenic 55.0%
CCCGAAGCTATATGGCAAGG+TGG - chr3_3:76539288-76539307 Msa0473820:intron 55.0%
CTCTCCATAGTCCGTCCCAA+TGG - chr3_3:76539342-76539361 Msa0473820:intron 55.0%
TCCATAGTCCGTCCCAATGG+CGG - chr3_3:76539345-76539364 Msa0473820:intron 55.0%
GAGCTTTACCGACATCGGTG+AGG + chr3_3:76539467-76539486 None:intergenic 55.0%
GAACCGTTCGAGAAGCTGCA+CGG - chr3_3:76540087-76540106 Msa0473820:five_prime_UTR 55.0%
TCTCCGTGCAGCTTCTCGAA+CGG + chr3_3:76540093-76540112 None:intergenic 55.0%
GCACTTGAATCAGTTCCGGC+TGG - chr3_3:76540582-76540601 Msa0473820:five_prime_UTR 55.0%
GCAAGCCTCGCTTCACTTTG+AGG + chr3_3:76539201-76539220 None:intergenic 55.0%
CCCGAAGCTATATGGCAAGG+TGG - chr3_3:76539288-76539307 Msa0473820:intron 55.0%
CTCTCCATAGTCCGTCCCAA+TGG - chr3_3:76539342-76539361 Msa0473820:intron 55.0%
TCCATAGTCCGTCCCAATGG+CGG - chr3_3:76539345-76539364 Msa0473820:intron 55.0%
GAGCTTTACCGACATCGGTG+AGG + chr3_3:76539467-76539486 None:intergenic 55.0%
GAACCGTTCGAGAAGCTGCA+CGG - chr3_3:76540087-76540106 Msa0473820:five_prime_UTR 55.0%
TCTCCGTGCAGCTTCTCGAA+CGG + chr3_3:76540093-76540112 None:intergenic 55.0%
GCACTTGAATCAGTTCCGGC+TGG - chr3_3:76540582-76540601 Msa0473820:five_prime_UTR 55.0%
!! TCCGCCATTGGGACGGACTA+TGG + chr3_3:76539349-76539368 None:intergenic 60.0%
ATAGTCCGTCCCAATGGCGG+AGG - chr3_3:76539348-76539367 Msa0473820:intron 60.0%
TCAGCGTCTCCTCCGCCATT+GGG + chr3_3:76539360-76539379 None:intergenic 60.0%
TTCAGCGTCTCCTCCGCCAT+TGG + chr3_3:76539361-76539380 None:intergenic 60.0%
AACGGCCATGCTCGCAGGTA+CGG + chr3_3:76540036-76540055 None:intergenic 60.0%
TCCACTGCGTCTCCCACCAA+CGG + chr3_3:76540054-76540073 None:intergenic 60.0%
CGCAGTGGAGGATCCAACTG+TGG - chr3_3:76540065-76540084 Msa0473820:exon 60.0%
GGGCAATGACATCCCGGACA+TGG + chr3_3:76540172-76540191 None:intergenic 60.0%
!! TCCGCCATTGGGACGGACTA+TGG + chr3_3:76539349-76539368 None:intergenic 60.0%
ATAGTCCGTCCCAATGGCGG+AGG - chr3_3:76539348-76539367 Msa0473820:intron 60.0%
TCAGCGTCTCCTCCGCCATT+GGG + chr3_3:76539360-76539379 None:intergenic 60.0%
TTCAGCGTCTCCTCCGCCAT+TGG + chr3_3:76539361-76539380 None:intergenic 60.0%
AACGGCCATGCTCGCAGGTA+CGG + chr3_3:76540036-76540055 None:intergenic 60.0%
TCCACTGCGTCTCCCACCAA+CGG + chr3_3:76540054-76540073 None:intergenic 60.0%
CGCAGTGGAGGATCCAACTG+TGG - chr3_3:76540065-76540084 Msa0473820:exon 60.0%
GGGCAATGACATCCCGGACA+TGG + chr3_3:76540172-76540191 None:intergenic 60.0%
CGTCTCCTCCGCCATTGGGA+CGG + chr3_3:76539356-76539375 None:intergenic 65.0%
AGGACCCGTACCTGCGAGCA+TGG - chr3_3:76540028-76540047 Msa0473820:CDS 65.0%
ACGGCCATGCTCGCAGGTAC+GGG + chr3_3:76540035-76540054 None:intergenic 65.0%
GTACCTGCGAGCATGGCCGT+TGG - chr3_3:76540035-76540054 Msa0473820:CDS 65.0%
CTGCGAGCATGGCCGTTGGT+GGG - chr3_3:76540039-76540058 Msa0473820:CDS 65.0%
! GTTGGTGGGAGACGCAGTGG+AGG - chr3_3:76540053-76540072 Msa0473820:CDS 65.0%
CGTCTCCTCCGCCATTGGGA+CGG + chr3_3:76539356-76539375 None:intergenic 65.0%
AGGACCCGTACCTGCGAGCA+TGG - chr3_3:76540028-76540047 Msa0473820:CDS 65.0%
ACGGCCATGCTCGCAGGTAC+GGG + chr3_3:76540035-76540054 None:intergenic 65.0%
GTACCTGCGAGCATGGCCGT+TGG - chr3_3:76540035-76540054 Msa0473820:CDS 65.0%
CTGCGAGCATGGCCGTTGGT+GGG - chr3_3:76540039-76540058 Msa0473820:CDS 65.0%
! GTTGGTGGGAGACGCAGTGG+AGG - chr3_3:76540053-76540072 Msa0473820:CDS 65.0%
CCACCAACGGCCATGCTCGC+AGG + chr3_3:76540041-76540060 None:intergenic 70.0%
CCTGCGAGCATGGCCGTTGG+TGG - chr3_3:76540038-76540057 Msa0473820:CDS 70.0%
! GCCGTTGGTGGGAGACGCAG+TGG - chr3_3:76540050-76540069 Msa0473820:CDS 70.0%
CCACCAACGGCCATGCTCGC+AGG + chr3_3:76540041-76540060 None:intergenic 70.0%
CCTGCGAGCATGGCCGTTGG+TGG - chr3_3:76540038-76540057 Msa0473820:CDS 70.0%
! GCCGTTGGTGGGAGACGCAG+TGG - chr3_3:76540050-76540069 Msa0473820:CDS 70.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 76538596 76540644 76538596 ID=Msa0473820;Name=Msa0473820
chr3_3 mRNA 76538596 76540644 76538596 ID=Msa0473820-mRNA-1;Parent=Msa0473820;Name=Msa0473820-mRNA-1;_AED=0.32;_eAED=0.32;_QI=572|0.5|0.33|1|1|1|3|0|265
chr3_3 exon 76538596 76538681 76538596 ID=Msa0473820-mRNA-1:exon:20103;Parent=Msa0473820-mRNA-1
chr3_3 exon 76538874 76539210 76538874 ID=Msa0473820-mRNA-1:exon:20102;Parent=Msa0473820-mRNA-1
chr3_3 exon 76539698 76540644 76539698 ID=Msa0473820-mRNA-1:exon:20101;Parent=Msa0473820-mRNA-1
chr3_3 five_prime_UTR 76540073 76540644 76540073 ID=Msa0473820-mRNA-1:five_prime_utr;Parent=Msa0473820-mRNA-1
chr3_3 CDS 76539698 76540072 76539698 ID=Msa0473820-mRNA-1:cds;Parent=Msa0473820-mRNA-1
chr3_3 CDS 76538874 76539210 76538874 ID=Msa0473820-mRNA-1:cds;Parent=Msa0473820-mRNA-1
chr3_3 CDS 76538596 76538681 76538596 ID=Msa0473820-mRNA-1:cds;Parent=Msa0473820-mRNA-1
Gene Sequence

>Msa0473820

ATGGAGAATGGGAAAGTTGCTGTGGTAAAGCCTCAAAGTGAAGCGAGGCTTGCCATTTTGGAACTTGCACACATTATGAGTGTTCCTACGTCCCTTAATGCTGTTCTCAAAATGAAAATACCCGAAGCTATATGGCAAGGTGGAAAGAACACTCCACTCTCTGCCTCTCAAATTCTCTCCATAGTCCGTCCCAATGGCGGAGGAGACGCTGAAAATCTCCAACGTATCCTCCGTTTGCTCACCACTTATACTATTTTTGTTGAGGACTTGAGCAGCAATGGTGAAAGGAAGTACTCCCTCACCGATGTCGGTAAAGCTCTTGTTCCCGATGATGATGGTCTGACCTGTGCATCATTTTTCGTCCAGCACCATCAGGACCCGTACCTGCGAGCATGGCCGTTGGTGGGAGACGCAGTGGAGGATCCAACTGTGGAACCGTTCGAGAAGCTGCACGGAGAAGCAGCATATGCATATTGCACAAAGGGACCAGAAGAAATGAGTTTGTTTTATGCTTCCATGTCCGGGATGTCATTGCCCTACATGAGGGAAATGTTGGAGAATTATGATGGCTTCAAAGGTGTGGAGACTCTAGTTGATGTTGGTGGCAATTCTGGTGTGAGTCTCAACATGATTATGAACAAATATCCAAACATACTCAAAGGCATCAATTTTGATCTTCCCGATATGATCTCTTCTGCACCTCAATATCCAGGTATAACACACGTCGGTGGTGATGCACTTGAATCAGTTCCGGCTGGAGATGCTATCTTCATTAAGGTGTCTCTTTCACTACATTAG
Protein sequence

>Msa0473820

MENGKVAVVKPQSEARLAILELAHIMSVPTSLNAVLKMKIPEAIWQGGKNTPLSASQILSIVRPNGGGDAENLQRILRLLTTYTIFVEDLSSNGERKYSLTDVGKALVPDDDGLTCASFFVQHHQDPYLRAWPLVGDAVEDPTVEPFEKLHGEAAYAYCTKGPEEMSLFYASMSGMSLPYMREMLENYDGFKGVETLVDVGGNSGVSLNMIMNKYPNILKGINFDLPDMISSAPQYPGITHVGGDALESVPAGDAIFIKVSLSLH*