AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0518060

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0518060 MtrunA17_Chr3g0130011 99.162 358 3 0 1 358 1 358 0.0 740
Msa0518060 MtrunA17_Chr3g0130061 86.313 358 49 0 1 358 1 358 0.0 646
Msa0518060 MtrunA17_Chr2g0314271 58.501 347 143 1 12 358 9 354 7.56e-159 449
Msa0518060 MtrunA17_Chr3g0128011 37.429 350 210 6 14 358 72 417 7.45e-71 227
Msa0518060 MtrunA17_Chr5g0448091 36.571 350 214 5 14 358 17 363 1.31e-68 219
Msa0518060 MtrunA17_Chr8g0367441 35.920 348 208 7 20 358 36 377 1.25e-66 214
Msa0518060 MtrunA17_Chr7g0276411 33.623 345 220 4 20 358 21 362 6.41e-66 212
Msa0518060 MtrunA17_Chr8g0367491 33.621 348 222 5 17 358 32 376 1.95e-65 211
Msa0518060 MtrunA17_Chr1g0200491 36.267 375 210 11 2 358 9 372 5.59e-63 205
Msa0518060 MtrunA17_Chr8g0367451 34.251 327 206 5 20 340 35 358 6.02e-63 205
Msa0518060 MtrunA17_Chr7g0276401 33.807 352 227 4 10 358 27 375 6.06e-63 205
Msa0518060 MtrunA17_Chr7g0218211 36.314 369 216 9 2 358 8 369 1.43e-62 204
Msa0518060 MtrunA17_Chr1g0163611 35.457 361 217 9 9 358 15 370 5.01e-62 202
Msa0518060 MtrunA17_Chr1g0163601 35.278 360 219 7 9 358 15 370 2.46e-61 201
Msa0518060 MtrunA17_Chr8g0367501 33.333 351 217 8 14 355 16 358 3.32e-61 202
Msa0518060 MtrunA17_Chr7g0218131 36.658 371 212 11 2 358 9 370 9.76e-61 199
Msa0518060 MtrunA17_Chr7g0218181 36.261 353 203 8 17 358 26 367 3.08e-60 198
Msa0518060 MtrunA17_Chr7g0218271 34.584 373 222 9 2 358 9 375 2.40e-59 196
Msa0518060 MtrunA17_Chr1g0163621 35.556 360 218 8 9 358 29 384 3.79e-59 196
Msa0518060 MtrunA17_Chr2g0307521 35.246 366 219 10 3 358 6 363 1.39e-58 193
Msa0518060 MtrunA17_Chr7g0218261 35.310 371 216 12 2 358 8 368 2.65e-58 193
Msa0518060 MtrunA17_Chr3g0085201 35.756 344 198 8 29 358 23 357 9.23e-58 191
Msa0518060 MtrunA17_Chr7g0218301 37.288 295 170 6 73 358 87 375 3.89e-56 187
Msa0518060 MtrunA17_Chr3g0085211 37.543 293 170 6 73 358 84 370 4.82e-56 187
Msa0518060 MtrunA17_Chr8g0367381 35.331 317 171 8 20 327 36 327 5.41e-55 183
Msa0518060 MtrunA17_Chr4g0022021 33.427 356 224 9 7 355 16 365 5.96e-52 176
Msa0518060 MtrunA17_Chr8g0345851 35.606 264 167 3 95 358 30 290 2.15e-51 172
Msa0518060 MtrunA17_Chr4g0021981 32.303 356 228 9 7 355 16 365 4.69e-48 166
Msa0518060 MtrunA17_Chr6g0482291 41.398 186 99 3 173 358 1 176 9.22e-42 144
Msa0518060 MtrunA17_Chr3g0121301 30.091 329 213 11 32 354 40 357 3.87e-37 137
Msa0518060 MtrunA17_Chr1g0188391 28.274 336 221 10 31 355 32 358 7.58e-36 133
Msa0518060 MtrunA17_Chr7g0219161 29.595 321 208 9 31 343 32 342 1.55e-34 130
Msa0518060 MtrunA17_Chr7g0219141 29.878 328 209 10 31 350 32 346 8.62e-33 125
Msa0518060 MtrunA17_Chr7g0223241 28.319 339 213 11 29 356 29 348 1.46e-32 124
Msa0518060 MtrunA17_Chr5g0432251 27.812 320 217 8 31 343 32 344 3.38e-32 124
Msa0518060 MtrunA17_Chr4g0040621 29.429 350 222 12 12 346 18 357 4.40e-32 124
Msa0518060 MtrunA17_Chr1g0188371 28.527 319 211 9 29 338 30 340 5.59e-32 123
Msa0518060 MtrunA17_Chr7g0223231 28.529 340 211 11 29 356 29 348 8.49e-32 122
Msa0518060 MtrunA17_Chr4g0046531 27.941 340 220 9 29 357 392 717 1.92e-31 125
Msa0518060 MtrunA17_Chr4g0046531 30.031 323 211 9 29 345 30 343 5.97e-31 124
Msa0518060 MtrunA17_Chr4g0014561 30.460 348 220 11 24 357 23 362 2.39e-31 121
Msa0518060 MtrunA17_Chr5g0432301 28.022 364 242 12 2 357 8 359 3.58e-31 121
Msa0518060 MtrunA17_Chr5g0432241 28.409 352 228 12 2 343 8 345 3.85e-31 120
Msa0518060 MtrunA17_Chr4g0046361 28.783 337 222 11 31 357 32 360 4.12e-31 120
Msa0518060 MtrunA17_Chr4g0014681 30.172 348 221 11 24 357 23 362 3.28e-30 118
Msa0518060 MtrunA17_Chr4g0046341 29.412 340 219 10 31 357 32 363 3.99e-28 112
Msa0518060 MtrunA17_Chr8g0367401 46.364 110 58 1 150 259 2 110 1.50e-27 105
Msa0518060 MtrunA17_Chr5g0432211 26.513 347 227 11 2 343 7 330 5.12e-27 109
Msa0518060 MtrunA17_Chr4g0014641 28.614 339 222 10 31 357 32 362 1.34e-26 108
Msa0518060 MtrunA17_Chr5g0432261 28.527 319 188 13 31 343 28 312 6.88e-25 103
Msa0518060 MtrunA17_Chr1g0170941 55.844 77 33 1 181 257 1 76 7.75e-22 88.2
Msa0518060 MtrunA17_Chr4g0014661 28.267 329 218 11 24 343 23 342 1.21e-21 94.7
Msa0518060 MtrunA17_Chr4g0014591 27.964 329 219 11 24 343 23 342 1.02e-18 86.3
Msa0518060 MtrunA17_Chr7g0219171 31.343 134 86 2 227 357 117 247 1.79e-18 84.0
Msa0518060 MtrunA17_Chr8g0367471 55.738 61 26 1 181 241 9 68 9.83e-18 77.8
Msa0518060 MtrunA17_Chr8g0367461 37.500 112 69 1 247 358 2 112 1.28e-16 75.1
Msa0518060 MtrunA17_Chr8g0367421 35.455 110 53 1 150 259 2 93 5.45e-16 73.6
Msa0518060 MtrunA17_Chr8g0367391 35.514 107 62 3 255 358 32 134 6.54e-12 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0518060 AT3G53140.1 57.835 351 144 1 12 358 9 359 2.96e-152 433
Msa0518060 AT5G54160.1 40.719 334 189 6 14 343 18 346 5.39e-76 239
Msa0518060 AT1G33030.1 35.277 343 213 7 23 358 10 350 2.05e-58 193
Msa0518060 AT1G51990.1 34.812 293 184 4 53 340 54 344 1.44e-57 191
Msa0518060 AT1G51990.2 35.154 293 183 4 53 340 54 344 5.76e-57 189
Msa0518060 AT1G77520.1 31.519 349 224 7 22 358 36 381 9.62e-53 179
Msa0518060 AT1G77530.1 33.807 352 212 10 22 358 36 381 6.19e-44 156
Msa0518060 AT1G21100.1 32.500 360 230 9 8 358 18 373 5.53e-41 148
Msa0518060 AT5G53810.1 32.716 324 202 8 29 339 39 359 2.27e-40 146
Msa0518060 AT1G63140.2 31.034 348 227 7 22 358 36 381 6.35e-40 145
Msa0518060 AT1G63140.4 31.034 348 227 7 22 358 56 401 1.29e-39 145
Msa0518060 AT1G21120.1 32.500 360 230 10 8 358 18 373 1.54e-39 144
Msa0518060 AT1G21130.1 31.944 360 232 9 8 358 18 373 2.04e-39 144
Msa0518060 AT1G21120.2 32.500 360 230 10 8 358 66 421 8.10e-39 143
Msa0518060 AT1G21110.1 31.944 360 232 9 8 358 18 373 1.20e-38 142
Msa0518060 AT1G76790.1 31.198 359 230 9 12 358 12 365 3.27e-38 140
Msa0518060 AT5G37170.2 38.660 194 115 4 167 358 43 234 5.14e-38 136
Msa0518060 AT5G37170.3 39.362 188 110 4 173 358 1 186 1.41e-37 134
Msa0518060 AT5G37170.1 38.660 194 115 4 167 358 143 334 6.28e-37 136
Msa0518060 AT1G62900.1 38.220 191 117 1 168 358 16 205 1.30e-34 126
Msa0518060 AT1G33030.3 34.661 251 156 6 23 266 10 259 2.61e-34 127
Msa0518060 AT1G33030.2 35.246 244 150 6 23 259 10 252 2.62e-34 127
Msa0518060 AT4G35160.1 30.028 363 233 10 1 348 15 371 3.25e-34 130
Msa0518060 AT4G35150.1 27.171 357 208 9 1 348 1 314 5.42e-31 120
Msa0518060 AT1G63140.1 31.727 249 157 7 22 259 56 302 1.86e-23 99.4
Msa0518060 AT1G21130.2 30.851 282 181 8 8 278 18 296 3.37e-22 95.5
Msa0518060 AT1G77530.2 31.878 229 141 7 22 238 36 261 3.20e-16 78.2
Msa0518060 AT1G63140.3 29.694 229 148 7 21 238 55 281 4.92e-14 72.0

Find 122 sgRNAs with CRISPR-Local

Find 294 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGAAGCGAGGCTTGCCATTT+TGG 0.196493 3_4:-69882841 Msa0518060:CDS
GTTGATGTTGGTGGCAATTC+TGG 0.233978 3_4:-69881801 Msa0518060:CDS
TGAAAATACCCGAAGCTATA+TGG 0.308849 3_4:-69882767 Msa0518060:CDS
TCCGCCATTGGGACGGACTA+TGG 0.310272 3_4:+69882701 None:intergenic
TGATGATGGGGAAAATAATA+AGG 0.319795 3_4:-69878711 Msa0518060:three_prime_UTR
TAAAACAAACTCATTTCTTC+TGG 0.323627 3_4:+69881906 None:intergenic
AATTCAAGTACAGGCAAATA+AGG 0.328492 3_4:+69878779 None:intergenic
TCCACCTTGCCATATAGCTT+CGG 0.328569 3_4:+69882758 None:intergenic
AGAAATGTTCGAATTTCAAC+TGG 0.348736 3_4:-69878514 Msa0518060:three_prime_UTR
TGGAGATGCTATCTTCATTA+AGG 0.373040 3_4:-69881445 Msa0518060:intron
TTGATGCCTTTGAGTATGTT+TGG 0.379016 3_4:+69881747 None:intergenic
CCACCTTGCCATATAGCTTC+GGG 0.392994 3_4:+69882759 None:intergenic
GCAAGCCTCGCTTCACTTTG+AGG 0.394145 3_4:+69882849 None:intergenic
AACAAATTAGTAAACAATAA+TGG 0.397360 3_4:-69882898 Msa0518060:exon
AGTGGTGTGATAGATGTAAT+TGG 0.399809 3_4:+69883110 None:intergenic
AAAATTGATTCTTTGTGAAC+CGG 0.399849 3_4:-69878969 Msa0518060:CDS
AAGTTGTTACAAGGCTCTTC+CGG 0.400003 3_4:-69878999 Msa0518060:CDS
CAGGCAAATAAGGATCAATA+TGG 0.400215 3_4:+69878789 None:intergenic
CCATTGCAACCAACGAAAGT+TGG 0.400413 3_4:-69878547 Msa0518060:three_prime_UTR
TCTTTGTGAACCGGTGTTGC+CGG 0.403316 3_4:-69878960 Msa0518060:CDS
CATTGTTGGCGGCTGACATA+TGG 0.414881 3_4:-69878907 Msa0518060:CDS
TTCAGCGTCTCCTCCGCCAT+TGG 0.420478 3_4:+69882689 None:intergenic
AAGTTGTTTGAATTCTTCTT+CGG 0.424797 3_4:+69878847 None:intergenic
CATTGCAACCAACGAAAGTT+GGG 0.438041 3_4:-69878546 Msa0518060:three_prime_UTR
TAAAAGAACAAGAGCATTGT+TGG 0.438527 3_4:-69878921 Msa0518060:CDS
TTATTTAAACCTGATGGTGC+TGG 0.448459 3_4:+69882517 None:intergenic
AACGGCCATGCTCGCAGGTA+CGG 0.451973 3_4:+69882014 None:intergenic
TAGTAAACAATAATGGAGAA+TGG 0.453157 3_4:-69882891 Msa0518060:exon
AGTAAACAATAATGGAGAAT+GGG 0.454231 3_4:-69882890 Msa0518060:exon
TCAGCGTCTCCTCCGCCATT+GGG 0.454837 3_4:+69882690 None:intergenic
AATGACAATGTATAGAACTA+AGG 0.459777 3_4:-69878882 Msa0518060:CDS
CCTGCGAGCATGGCCGTTGG+TGG 0.463499 3_4:-69882009 Msa0518060:CDS
AATGTGTGCAAGTTCCAAAA+TGG 0.463723 3_4:+69882827 None:intergenic
AAACAACTTGGCATTTCTGC+TGG 0.463760 3_4:-69878833 Msa0518060:CDS
GAGAATTATGATGGCTTCAA+AGG 0.465146 3_4:-69881837 Msa0518060:CDS
CCAACTTTCGTTGGTTGCAA+TGG 0.468729 3_4:+69878547 None:intergenic
TTTCATAAATGAGCAGAAGA+AGG 0.468809 3_4:-69878758 Msa0518060:exon
TTACTCTCATCGGTCTGCTC+CGG 0.470793 3_4:+69878941 None:intergenic
TACAAGGCTCTTCCGGTGGC+CGG 0.475763 3_4:-69878992 Msa0518060:CDS
TGATGCACTTGAATCAGTTC+CGG 0.476408 3_4:-69881469 Msa0518060:CDS
AGAATTTGAGAGGCAGAGAG+TGG 0.478385 3_4:+69882726 None:intergenic
CCACCAACGGCCATGCTCGC+AGG 0.480027 3_4:+69882009 None:intergenic
GATCTAAGCCCAACTTTCGT+TGG 0.489521 3_4:+69878538 None:intergenic
TGTGGTGCTTTATGTGATGA+TGG 0.490617 3_4:-69878725 Msa0518060:three_prime_UTR
TAGTATAAGTGGTGAGCAAA+CGG 0.493082 3_4:+69882649 None:intergenic
GCATATGCATATTGCACAAA+GGG 0.496481 3_4:-69881930 Msa0518060:CDS
CATTTATGAAATTCAAGTAC+AGG 0.499673 3_4:+69878770 None:intergenic
GAAATGTTGGAGAATTATGA+TGG 0.500624 3_4:-69881846 Msa0518060:CDS
ACGGCCATGCTCGCAGGTAC+GGG 0.509344 3_4:+69882015 None:intergenic
TCTTCTGCACCTCAATATCC+AGG 0.511364 3_4:-69881702 Msa0518060:intron
GAGAAGAGAGAGAAAGAGAG+TGG 0.514272 3_4:+69883427 None:intergenic
GTGGTGCTTTATGTGATGAT+GGG 0.514769 3_4:-69878724 Msa0518060:three_prime_UTR
GACTAATTACCTGGATATTG+AGG 0.516427 3_4:+69881693 None:intergenic
GGCCTTGCAAAGTTGTTACA+AGG 0.518740 3_4:-69879008 Msa0518060:CDS
AGGTGCAGAAGAGATCATAT+CGG 0.519685 3_4:+69881713 None:intergenic
TTCTCGAACGGTTCCACAGT+TGG 0.522298 3_4:+69881969 None:intergenic
TCCAACATTTCCCTCATGTA+GGG 0.523535 3_4:+69881858 None:intergenic
TCTCCGTGCAGCTTCTCGAA+CGG 0.525123 3_4:+69881957 None:intergenic
GCCCTACATGAGGGAAATGT+TGG 0.530544 3_4:-69881859 Msa0518060:CDS
CTGCGAGCATGGCCGTTGGT+GGG 0.530884 3_4:-69882008 Msa0518060:CDS
TGCAGTGGACAGTGTTAACA+TGG 0.535443 3_4:-69879051 Msa0518060:intron
TCGGTCTGCTCCGGCAACAC+CGG 0.535499 3_4:+69878950 None:intergenic
TGAATATTTATTCACAGTCA+AGG 0.535698 3_4:+69878650 None:intergenic
GGGCAATGACATCCCGGACA+TGG 0.544215 3_4:+69881878 None:intergenic
CAGGTCAGACCATCATCATC+GGG 0.545460 3_4:+69882555 None:intergenic
CGTCTCCTCCGCCATTGGGA+CGG 0.546520 3_4:+69882694 None:intergenic
GCTCTTGTTCCCGATGATGA+TGG 0.547808 3_4:-69882564 Msa0518060:CDS
AGAAAGTTTAAGATATAATG+AGG 0.552535 3_4:+69883143 None:intergenic
AGGACCCGTACCTGCGAGCA+TGG 0.558958 3_4:-69882019 Msa0518060:CDS
ATGACAATGTATAGAACTAA+GGG 0.561414 3_4:-69878881 Msa0518060:CDS
GCACTTGAATCAGTTCCGGC+TGG 0.561424 3_4:-69881465 Msa0518060:CDS
ACAATAAGACATGACGGCAA+GGG 0.562354 3_4:+69883395 None:intergenic
GACAATAAGACATGACGGCA+AGG 0.565083 3_4:+69883394 None:intergenic
GGTGCAGAAGAGATCATATC+GGG 0.566072 3_4:+69881714 None:intergenic
AGCCTTGTAACAACTTTGCA+AGG 0.570449 3_4:+69879006 None:intergenic
ACAGGTCAGACCATCATCAT+CGG 0.570773 3_4:+69882554 None:intergenic
CATGTAGGGCAATGACATCC+CGG 0.570892 3_4:+69881872 None:intergenic
GCCGTTGGTGGGAGACGCAG+TGG 0.570986 3_4:-69881997 Msa0518060:CDS
CTCCAACATTTCCCTCATGT+AGG 0.575549 3_4:+69881857 None:intergenic
TCCATAGTCCGTCCCAATGG+CGG 0.577664 3_4:-69882702 Msa0518060:CDS
ACTTGAGCAGCAATGGTGAA+AGG 0.580995 3_4:-69882614 Msa0518060:CDS
GTTGAGGACTTGAGCAGCAA+TGG 0.582872 3_4:-69882621 Msa0518060:CDS
AGCTTTACCGACATCGGTGA+GGG 0.585301 3_4:+69882584 None:intergenic
CTCTCCATAGTCCGTCCCAA+TGG 0.588927 3_4:-69882705 Msa0518060:CDS
AAGTACTCCCTCACCGATGT+CGG 0.589045 3_4:-69882591 Msa0518060:CDS
GAAGAAGAATTCAAACAACT+TGG 0.589425 3_4:-69878845 Msa0518060:CDS
GTGGAGACTCTAGTTGATGT+TGG 0.592031 3_4:-69881813 Msa0518060:CDS
AAGAACAAGAGCATTGTTGG+CGG 0.593672 3_4:-69878918 Msa0518060:CDS
GTTGGTGGGAGACGCAGTGG+AGG 0.598693 3_4:-69881994 Msa0518060:CDS
CAAATAAGGATCAATATGGA+AGG 0.598974 3_4:+69878793 None:intergenic
GGATGTCATTGCCCTACATG+AGG 0.599139 3_4:-69881869 Msa0518060:CDS
AAATATCCAAACATACTCAA+AGG 0.599530 3_4:-69881753 Msa0518060:CDS
ATAATAGATATATGTACATG+TGG 0.600609 3_4:-69883320 Msa0518060:five_prime_UTR
ATAGTCCGTCCCAATGGCGG+AGG 0.606262 3_4:-69882699 Msa0518060:CDS
AACAAGAGCTTTACCGACAT+CGG 0.606967 3_4:+69882578 None:intergenic
TCCACTGCGTCTCCCACCAA+CGG 0.608024 3_4:+69881996 None:intergenic
TTATGATGGCTTCAAAGGTG+TGG 0.610913 3_4:-69881832 Msa0518060:CDS
CAATAAGACATGACGGCAAG+GGG 0.611700 3_4:+69883396 None:intergenic
ATGAAGATAGCATCTCCAGC+CGG 0.613987 3_4:+69881450 None:intergenic
TTGTTACAAGGCTCTTCCGG+TGG 0.614903 3_4:-69878996 Msa0518060:CDS
GACAGATGAAGAATTCAAGA+AGG 0.615326 3_4:-69879029 Msa0518060:CDS
GATGTCATTGCCCTACATGA+GGG 0.616477 3_4:-69881868 Msa0518060:CDS
TGGTGCTTTATGTGATGATG+GGG 0.620869 3_4:-69878723 Msa0518060:three_prime_UTR
GACTATGGAGAGAATTTGAG+AGG 0.637733 3_4:+69882716 None:intergenic
AGCATATGCATATTGCACAA+AGG 0.638121 3_4:-69881931 Msa0518060:CDS
AGTAAGACAATAAGACATGA+CGG 0.640277 3_4:+69883389 None:intergenic
GAACCGTTCGAGAAGCTGCA+CGG 0.649830 3_4:-69881960 Msa0518060:CDS
GTACCTGCGAGCATGGCCGT+TGG 0.655083 3_4:-69882012 Msa0518060:CDS
ATACCCGAAGCTATATGGCA+AGG 0.657615 3_4:-69882762 Msa0518060:CDS
GAGCTTTACCGACATCGGTG+AGG 0.661236 3_4:+69882583 None:intergenic
TGAGCAAACGGAGGATACGT+TGG 0.661794 3_4:+69882661 None:intergenic
GAGACTCTAGTTGATGTTGG+TGG 0.662906 3_4:-69881810 Msa0518060:CDS
GAAGAAGGCTTTGAAGTGTG+TGG 0.663450 3_4:-69878743 Msa0518060:three_prime_UTR
GGAGAATGGGAAAGTTGCTG+TGG 0.664770 3_4:-69882877 Msa0518060:CDS
AGAACAGCATTAAGGGACGT+AGG 0.670135 3_4:+69882795 None:intergenic
CGCAGTGGAGGATCCAACTG+TGG 0.674969 3_4:-69881982 Msa0518060:CDS
CCCGAAGCTATATGGCAAGG+TGG 0.684266 3_4:-69882759 Msa0518060:CDS
TAAAGCCTCAAAGTGAAGCG+AGG 0.698513 3_4:-69882854 Msa0518060:CDS
TATAAGTGGTGAGCAAACGG+AGG 0.715321 3_4:+69882652 None:intergenic
GAAATGTTCGAATTTCAACT+GGG 0.718821 3_4:-69878513 Msa0518060:three_prime_UTR
TATATAGGTATAACACACGT+CGG 0.727621 3_4:-69881495 Msa0518060:intron
ATAGGTATAACACACGTCGG+TGG 0.737739 3_4:-69881492 Msa0518060:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAATTAAAAATTCTCA+AGG - chr3_4:69878760-69878779 Msa0518060:exon 10.0%
!! ACAGTTATTATAATTATTAT+TGG - chr3_4:69879568-69879587 Msa0518060:intron 10.0%
!! CAGTTATTATAATTATTATT+GGG - chr3_4:69879569-69879588 Msa0518060:intron 10.0%
!!! TTTTTTAAATTAGACTAATT+AGG + chr3_4:69880287-69880306 None:intergenic 10.0%
!!! ATAACCAAAATTTTATTATT+AGG - chr3_4:69880637-69880656 Msa0518060:intron 10.0%
!!! TTACTTTTTTGTTTTTTTTT+GGG - chr3_4:69880746-69880765 Msa0518060:intron 10.0%
!! AAAAAAAAGAATAATACAAA+AGG - chr3_4:69880821-69880840 Msa0518060:intron 10.0%
!! AAAATTTACATCATAATTTA+AGG - chr3_4:69882076-69882095 Msa0518060:intron 10.0%
!! AAATTTACATCATAATTTAA+GGG - chr3_4:69882077-69882096 Msa0518060:intron 10.0%
!!! ATACTTTAGTTTTTTTTTTA+AGG - chr3_4:69882712-69882731 Msa0518060:CDS 10.0%
!! AACAAATTAGTAAACAATAA+TGG - chr3_4:69879028-69879047 Msa0518060:CDS 15.0%
!! AAGAAGAAAAAAAAGATTAA+TGG - chr3_4:69879527-69879546 Msa0518060:intron 15.0%
!! AGAAGAAAAAAAAGATTAAT+GGG - chr3_4:69879528-69879547 Msa0518060:intron 15.0%
!!! TTCAATTTATTTAACTTTTG+TGG - chr3_4:69880404-69880423 Msa0518060:intron 15.0%
!! ATAAAAAAGTAAATAGATAG+TGG + chr3_4:69880619-69880638 None:intergenic 15.0%
!!! TACTCCTAATAATAAAATTT+TGG + chr3_4:69880644-69880663 None:intergenic 15.0%
!!! CTTACTTTTTTGTTTTTTTT+TGG - chr3_4:69880745-69880764 Msa0518060:intron 15.0%
!!! TTTTTTTTTTCTCTTTTCAT+TGG - chr3_4:69881689-69881708 Msa0518060:intron 15.0%
!! AATTTACATCATAATTTAAG+GGG - chr3_4:69882078-69882097 Msa0518060:intron 15.0%
!!! TATTTTTTATAAGAAACTAG+CGG + chr3_4:69882279-69882298 None:intergenic 15.0%
!! ATAATAGATATATGTACATG+TGG - chr3_4:69878606-69878625 Msa0518060:three_prime_UTR 20.0%
!!! AGAAAGTTTAAGATATAATG+AGG + chr3_4:69878786-69878805 None:intergenic 20.0%
!!! TTTTTAATGTAATAGATGAG+TGG + chr3_4:69878837-69878856 None:intergenic 20.0%
!!! GTTAAAAAGTTGTTTGAAAT+TGG + chr3_4:69878871-69878890 None:intergenic 20.0%
!! ATAAGTTTATTTAAACCTGA+TGG + chr3_4:69879418-69879437 None:intergenic 20.0%
!! GAAGAAAAAAAAGATTAATG+GGG - chr3_4:69879529-69879548 Msa0518060:intron 20.0%
!! TATAATAACTGTGTATTTGT+TGG + chr3_4:69879560-69879579 None:intergenic 20.0%
!!! TAATTTTGTGGAAATGAATA+TGG - chr3_4:69879610-69879629 Msa0518060:intron 20.0%
!! TACAAAATCAACTTATAAGT+CGG + chr3_4:69879737-69879756 None:intergenic 20.0%
!!! ACGAACTTGTTATAATATAT+GGG + chr3_4:69879798-69879817 None:intergenic 20.0%
!!! AGGTAATTAGTCTATTTTTT+GGG - chr3_4:69880244-69880263 Msa0518060:intron 20.0%
!! AATTTAATAAAATTAGTCCG+TGG + chr3_4:69880364-69880383 None:intergenic 20.0%
!!! AAAATATTTTGGAGATAAGT+AGG + chr3_4:69880534-69880553 None:intergenic 20.0%
!!! GCTAAAGTTGAAAAATATTT+TGG + chr3_4:69880545-69880564 None:intergenic 20.0%
!! TATGTTTGAACATTAGTTAT+TGG + chr3_4:69880682-69880701 None:intergenic 20.0%
!!! TTTTAATTTATCTAAGGTGT+TGG + chr3_4:69880800-69880819 None:intergenic 20.0%
!! AAAAAAAAAAGTTGTCACAT+AGG + chr3_4:69881679-69881698 None:intergenic 20.0%
!!! TAATGATGATCTTGTTTTTT+TGG + chr3_4:69882385-69882404 None:intergenic 20.0%
!! GTAAAATAAGCAAGATTATA+AGG + chr3_4:69882674-69882693 None:intergenic 20.0%
!!! GTGGTTTTATGTTATTAACA+TGG - chr3_4:69878625-69878644 Msa0518060:three_prime_UTR 25.0%
! GCTATTTATAGAAAAACGAT+TGG + chr3_4:69878942-69878961 None:intergenic 25.0%
!! TAGTAAACAATAATGGAGAA+TGG - chr3_4:69879035-69879054 Msa0518060:CDS 25.0%
!! AGTAAACAATAATGGAGAAT+GGG - chr3_4:69879036-69879055 Msa0518060:CDS 25.0%
! CTCAACAAAAATAGTATAAG+TGG + chr3_4:69879291-69879310 None:intergenic 25.0%
!!! CACTTATACTATTTTTGTTG+AGG - chr3_4:69879289-69879308 Msa0518060:intron 25.0%
!!! ACTAAGAGTACTTAATTTTG+TGG - chr3_4:69879598-69879617 Msa0518060:intron 25.0%
!!! CACGAACTTGTTATAATATA+TGG + chr3_4:69879799-69879818 None:intergenic 25.0%
! TCAAAAAAAATCAAACGTAC+AGG - chr3_4:69879887-69879906 Msa0518060:intron 25.0%
! TAAAACAAACTCATTTCTTC+TGG + chr3_4:69880023-69880042 None:intergenic 25.0%
! AAATATCCAAACATACTCAA+AGG - chr3_4:69880173-69880192 Msa0518060:intron 25.0%
! CAAAAAATAGACTAATTACC+TGG + chr3_4:69880245-69880264 None:intergenic 25.0%
!!! CAGGTAATTAGTCTATTTTT+TGG - chr3_4:69880243-69880262 Msa0518060:intron 25.0%
! AGTTAGATTGACAAATATAG+AGG - chr3_4:69880311-69880330 Msa0518060:intron 25.0%
!!! CATATCTCTATTTTTGAGAA+GGG + chr3_4:69880591-69880610 None:intergenic 25.0%
!!! TCATATCTCTATTTTTGAGA+AGG + chr3_4:69880592-69880611 None:intergenic 25.0%
!! TAGCAACCATTTTGTATTAT+GGG + chr3_4:69880711-69880730 None:intergenic 25.0%
!! TTAGCAACCATTTTGTATTA+TGG + chr3_4:69880712-69880731 None:intergenic 25.0%
! AAAGAATAATACAAAAGGTC+AGG - chr3_4:69880826-69880845 Msa0518060:intron 25.0%
! AAGAATAATACAAAAGGTCA+GGG - chr3_4:69880827-69880846 Msa0518060:intron 25.0%
!!! CTGGTTGGTTTAAAAATTTT+TGG + chr3_4:69880890-69880909 None:intergenic 25.0%
!! AATTTTTAAACCAACCAGAA+AGG - chr3_4:69880892-69880911 Msa0518060:intron 25.0%
! TTAAATCTTGGTTTCTATGA+CGG + chr3_4:69880971-69880990 None:intergenic 25.0%
!!! CATTGGAATCTTTAATTTGT+TGG + chr3_4:69881143-69881162 None:intergenic 25.0%
!!! TTGGACAATTTTATTTGGTT+GGG + chr3_4:69881236-69881255 None:intergenic 25.0%
!!! ATTGGACAATTTTATTTGGT+TGG + chr3_4:69881237-69881256 None:intergenic 25.0%
!! TTTTCATTGGTCAAAAACAA+TGG - chr3_4:69881702-69881721 Msa0518060:intron 25.0%
! AAAATGCGTAGTTATTGTTA+GGG + chr3_4:69881825-69881844 None:intergenic 25.0%
! TAAAATGCGTAGTTATTGTT+AGG + chr3_4:69881826-69881845 None:intergenic 25.0%
! TTTAGACGAGATTTAAACTA+TGG - chr3_4:69881854-69881873 Msa0518060:CDS 25.0%
! ATGTCTTTGTAATAGAAAAC+TGG - chr3_4:69881950-69881969 Msa0518060:CDS 25.0%
!!! TTGTTTTATTTGTGACAATG+AGG - chr3_4:69881986-69882005 Msa0518060:CDS 25.0%
!! GATCTTTCTTTTCACTTATT+TGG + chr3_4:69882310-69882329 None:intergenic 25.0%
! AATACAGTACTCACTAAATA+CGG - chr3_4:69882618-69882637 Msa0518060:CDS 25.0%
! AAGCAAGATTATAAGGAATA+TGG + chr3_4:69882667-69882686 None:intergenic 25.0%
!!! GTATAATTATTGTTTTGCAG+TGG - chr3_4:69882860-69882879 Msa0518060:CDS 25.0%
!! TTCACAAAGAATCAATTTTC+CGG + chr3_4:69882956-69882975 None:intergenic 25.0%
!! AAAATTGATTCTTTGTGAAC+CGG - chr3_4:69882957-69882976 Msa0518060:five_prime_UTR 25.0%
! AATGACAATGTATAGAACTA+AGG - chr3_4:69883044-69883063 Msa0518060:five_prime_UTR 25.0%
! ATGACAATGTATAGAACTAA+GGG - chr3_4:69883045-69883064 Msa0518060:five_prime_UTR 25.0%
! AAGTTGTTTGAATTCTTCTT+CGG + chr3_4:69883082-69883101 None:intergenic 25.0%
! CATTTATGAAATTCAAGTAC+AGG + chr3_4:69883159-69883178 None:intergenic 25.0%
! TGAATATTTATTCACAGTCA+AGG + chr3_4:69883279-69883298 None:intergenic 25.0%
AGTAAGACAATAAGACATGA+CGG + chr3_4:69878540-69878559 None:intergenic 30.0%
!! CATTTTGAGAACAGCATTAA+GGG + chr3_4:69879141-69879160 None:intergenic 30.0%
!! TCATTTTGAGAACAGCATTA+AGG + chr3_4:69879142-69879161 None:intergenic 30.0%
GAAATGTTGGAGAATTATGA+TGG - chr3_4:69880080-69880099 Msa0518060:intron 30.0%
AGACTAATTAGGTTCCAAAA+TGG + chr3_4:69880276-69880295 None:intergenic 30.0%
AACCAAAAAACTAACATGGT+CGG + chr3_4:69880338-69880357 None:intergenic 30.0%
GACAAACCAAAAAACTAACA+TGG + chr3_4:69880342-69880361 None:intergenic 30.0%
!!! TTAGTTTTTTGGTTTGTCCA+CGG - chr3_4:69880344-69880363 Msa0518060:intron 30.0%
! AACTTTTGTGGCATGTATAT+AGG - chr3_4:69880416-69880435 Msa0518060:intron 30.0%
TATATAGGTATAACACACGT+CGG - chr3_4:69880431-69880450 Msa0518060:intron 30.0%
GAGGAAATCATATCTTACTA+TGG + chr3_4:69880569-69880588 None:intergenic 30.0%
GATAATACAACCAACTCAAA+GGG - chr3_4:69880914-69880933 Msa0518060:intron 30.0%
ATAATACAACCAACTCAAAG+GGG - chr3_4:69880915-69880934 Msa0518060:intron 30.0%
TAAATCTTGGTTTCTATGAC+GGG + chr3_4:69880970-69880989 None:intergenic 30.0%
GTCATAGAAACCAAGATTTA+AGG - chr3_4:69880970-69880989 Msa0518060:intron 30.0%
TATTCGTTCACCTTAAATCT+TGG + chr3_4:69880983-69881002 None:intergenic 30.0%
TTCGACACTATTCTAATTTG+GGG + chr3_4:69881174-69881193 None:intergenic 30.0%
GTTCGACACTATTCTAATTT+GGG + chr3_4:69881175-69881194 None:intergenic 30.0%
TGTTCGACACTATTCTAATT+TGG + chr3_4:69881176-69881195 None:intergenic 30.0%
!! TGGACAATTTTATTTGGTTG+GGG + chr3_4:69881235-69881254 None:intergenic 30.0%
!! TCGGATTGGACAATTTTATT+TGG + chr3_4:69881241-69881260 None:intergenic 30.0%
AAATAAAATTGTCCAATCCG+AGG - chr3_4:69881240-69881259 Msa0518060:intron 30.0%
TACACGATTTAATCTCAACA+AGG - chr3_4:69881302-69881321 Msa0518060:intron 30.0%
TTCGGATATATTCTGAGTTT+GGG + chr3_4:69881537-69881556 None:intergenic 30.0%
ATTCGGATATATTCTGAGTT+TGG + chr3_4:69881538-69881557 None:intergenic 30.0%
! ATAGGTTAAGTTGTCTCATT+TGG + chr3_4:69881661-69881680 None:intergenic 30.0%
GAGATCTTATATCATTTCAC+CGG - chr3_4:69882463-69882482 Msa0518060:intron 30.0%
! TCTTGTTCTTTTACTCTCAT+CGG + chr3_4:69882998-69883017 None:intergenic 30.0%
!! TAAAAGAACAAGAGCATTGT+TGG - chr3_4:69883005-69883024 Msa0518060:five_prime_UTR 30.0%
GAAGAAGAATTCAAACAACT+TGG - chr3_4:69883081-69883100 Msa0518060:five_prime_UTR 30.0%
CAAATAAGGATCAATATGGA+AGG + chr3_4:69883136-69883155 None:intergenic 30.0%
AATTCAAGTACAGGCAAATA+AGG + chr3_4:69883150-69883169 None:intergenic 30.0%
TTTCATAAATGAGCAGAAGA+AGG - chr3_4:69883168-69883187 Msa0518060:five_prime_UTR 30.0%
!! TGATGATGGGGAAAATAATA+AGG - chr3_4:69883215-69883234 Msa0518060:five_prime_UTR 30.0%
GAGCTAAGATGCTAATTAAT+TGG - chr3_4:69883244-69883263 Msa0518060:five_prime_UTR 30.0%
AGAAATGTTCGAATTTCAAC+TGG - chr3_4:69883412-69883431 Msa0518060:five_prime_UTR 30.0%
GAAATGTTCGAATTTCAACT+GGG - chr3_4:69883413-69883432 Msa0518060:five_prime_UTR 30.0%
AGTGGTGTGATAGATGTAAT+TGG + chr3_4:69878819-69878838 None:intergenic 35.0%
! AAGATTGTGTGTTTTCAGCA+GGG + chr3_4:69878989-69879008 None:intergenic 35.0%
! AAAGATTGTGTGTTTTCAGC+AGG + chr3_4:69878990-69879009 None:intergenic 35.0%
AATGTGTGCAAGTTCCAAAA+TGG + chr3_4:69879102-69879121 None:intergenic 35.0%
TGAAAATACCCGAAGCTATA+TGG - chr3_4:69879159-69879178 Msa0518060:intron 35.0%
TAGTATAAGTGGTGAGCAAA+CGG + chr3_4:69879280-69879299 None:intergenic 35.0%
! TTATTTAAACCTGATGGTGC+TGG + chr3_4:69879412-69879431 None:intergenic 35.0%
AGCATATGCATATTGCACAA+AGG - chr3_4:69879995-69880014 Msa0518060:intron 35.0%
GCATATGCATATTGCACAAA+GGG - chr3_4:69879996-69880015 Msa0518060:intron 35.0%
!! TTGTTTTATGCTTCCATGTC+CGG - chr3_4:69880035-69880054 Msa0518060:intron 35.0%
GAGAATTATGATGGCTTCAA+AGG - chr3_4:69880089-69880108 Msa0518060:intron 35.0%
TTGATGCCTTTGAGTATGTT+TGG + chr3_4:69880182-69880201 None:intergenic 35.0%
GACTAATTACCTGGATATTG+AGG + chr3_4:69880236-69880255 None:intergenic 35.0%
!!! TTTTTGGGTCACTACCATTT+TGG - chr3_4:69880259-69880278 Msa0518060:intron 35.0%
TGGAGATGCTATCTTCATTA+AGG - chr3_4:69880481-69880500 Msa0518060:intron 35.0%
!!! ATCTCTATTTTTGAGAAGGG+AGG + chr3_4:69880588-69880607 None:intergenic 35.0%
CATCAGCCCATAATACAAAA+TGG - chr3_4:69880702-69880721 Msa0518060:intron 35.0%
!! TTTATCTAAGGTGTTGGAGT+GGG + chr3_4:69880794-69880813 None:intergenic 35.0%
!! ATTTATCTAAGGTGTTGGAG+TGG + chr3_4:69880795-69880814 None:intergenic 35.0%
! GTTGTATTATCCTTTCTGGT+TGG + chr3_4:69880905-69880924 None:intergenic 35.0%
GTTGGTTGTATTATCCTTTC+TGG + chr3_4:69880909-69880928 None:intergenic 35.0%
GGATAATACAACCAACTCAA+AGG - chr3_4:69880913-69880932 Msa0518060:intron 35.0%
TTGATTTATCCCCTTTGAGT+TGG + chr3_4:69880927-69880946 None:intergenic 35.0%
!!! AATTTGGGGTTGCTTTTCAT+TGG + chr3_4:69881160-69881179 None:intergenic 35.0%
!! CGTGTAGCTTTAGATTTAGT+TGG + chr3_4:69881288-69881307 None:intergenic 35.0%
ACGATTTAATCTCAACAAGG+TGG - chr3_4:69881305-69881324 Msa0518060:intron 35.0%
!!! TTTGTGGTGGTTTTTTGTTG+TGG + chr3_4:69881367-69881386 None:intergenic 35.0%
!! TTCAGACTTACTTGCTTTTG+TGG + chr3_4:69881383-69881402 None:intergenic 35.0%
ATTGGTCAAAAACAATGGAG+TGG - chr3_4:69881707-69881726 Msa0518060:CDS 35.0%
TTGGTCAAAAACAATGGAGT+GGG - chr3_4:69881708-69881727 Msa0518060:CDS 35.0%
GTAATAGAAAACTGGTGTAG+TGG - chr3_4:69881958-69881977 Msa0518060:CDS 35.0%
AAATTGGATAGACAGCTTTG+TGG - chr3_4:69882246-69882265 Msa0518060:intron 35.0%
CTGAAAACTAGCTGACAATA+GGG - chr3_4:69882526-69882545 Msa0518060:intron 35.0%
GACAGATGAAGAATTCAAGA+AGG - chr3_4:69882897-69882916 Msa0518060:exon 35.0%
CAGGCAAATAAGGATCAATA+TGG + chr3_4:69883140-69883159 None:intergenic 35.0%
ACAATAAGACATGACGGCAA+GGG + chr3_4:69878534-69878553 None:intergenic 40.0%
! AGATTGTGTGTTTTCAGCAG+GGG + chr3_4:69878988-69879007 None:intergenic 40.0%
GACTATGGAGAGAATTTGAG+AGG + chr3_4:69879213-69879232 None:intergenic 40.0%
AACAAGAGCTTTACCGACAT+CGG + chr3_4:69879351-69879370 None:intergenic 40.0%
! TGTTTTATGCTTCCATGTCC+GGG - chr3_4:69880036-69880055 Msa0518060:intron 40.0%
TCCAACATTTCCCTCATGTA+GGG + chr3_4:69880071-69880090 None:intergenic 40.0%
TTATGATGGCTTCAAAGGTG+TGG - chr3_4:69880094-69880113 Msa0518060:intron 40.0%
AGGTGCAGAAGAGATCATAT+CGG + chr3_4:69880216-69880235 None:intergenic 40.0%
!!! GACCGACCATGTTAGTTTTT+TGG - chr3_4:69880333-69880352 Msa0518060:intron 40.0%
TGATGCACTTGAATCAGTTC+CGG - chr3_4:69880457-69880476 Msa0518060:intron 40.0%
! GCTTCTGTGTCATTATGACT+TGG + chr3_4:69881087-69881106 None:intergenic 40.0%
! AGATTTAGTTGGCTTCCTGT+TGG + chr3_4:69881277-69881296 None:intergenic 40.0%
CAAGGTGGCTTATGTATTCA+TGG + chr3_4:69881336-69881355 None:intergenic 40.0%
! TTTGTTGTGGTTCGATCTCA+AGG + chr3_4:69881354-69881373 None:intergenic 40.0%
!! AGACTTACTTGCTTTTGTGG+TGG + chr3_4:69881380-69881399 None:intergenic 40.0%
ACAACATGGAAGCTTGTCAT+GGG + chr3_4:69881422-69881441 None:intergenic 40.0%
AACAACATGGAAGCTTGTCA+TGG + chr3_4:69881423-69881442 None:intergenic 40.0%
TCTTCCACGATTCAACAACA+TGG + chr3_4:69881436-69881455 None:intergenic 40.0%
GGATATATTCTGAGTTTGGG+TGG + chr3_4:69881534-69881553 None:intergenic 40.0%
! GAGATTGATAGCTCAGACAT+GGG + chr3_4:69881573-69881592 None:intergenic 40.0%
! TGAGATTGATAGCTCAGACA+TGG + chr3_4:69881574-69881593 None:intergenic 40.0%
!! TGTGTTGAACACGTTTTGAC+CGG + chr3_4:69882485-69882504 None:intergenic 40.0%
ACGTGTTCAACACAATCAAG+TGG - chr3_4:69882491-69882510 Msa0518060:intron 40.0%
GCTGAAAACTAGCTGACAAT+AGG - chr3_4:69882525-69882544 Msa0518060:intron 40.0%
TGCTCATAAGTTAGCAAAGG+TGG + chr3_4:69882552-69882571 None:intergenic 40.0%
GGTTGCTCATAAGTTAGCAA+AGG + chr3_4:69882555-69882574 None:intergenic 40.0%
! AGCCTTGTAACAACTTTGCA+AGG + chr3_4:69882923-69882942 None:intergenic 40.0%
AAGTTGTTACAAGGCTCTTC+CGG - chr3_4:69882927-69882946 Msa0518060:five_prime_UTR 40.0%
!! AAGAACAAGAGCATTGTTGG+CGG - chr3_4:69883008-69883027 Msa0518060:five_prime_UTR 40.0%
AAACAACTTGGCATTTCTGC+TGG - chr3_4:69883093-69883112 Msa0518060:five_prime_UTR 40.0%
TGTGGTGCTTTATGTGATGA+TGG - chr3_4:69883201-69883220 Msa0518060:five_prime_UTR 40.0%
GTGGTGCTTTATGTGATGAT+GGG - chr3_4:69883202-69883221 Msa0518060:five_prime_UTR 40.0%
! TGGTGCTTTATGTGATGATG+GGG - chr3_4:69883203-69883222 Msa0518060:five_prime_UTR 40.0%
CATTGCAACCAACGAAAGTT+GGG - chr3_4:69883380-69883399 Msa0518060:five_prime_UTR 40.0%
GAGAAGAGAGAGAAAGAGAG+TGG + chr3_4:69878502-69878521 None:intergenic 45.0%
CAATAAGACATGACGGCAAG+GGG + chr3_4:69878533-69878552 None:intergenic 45.0%
GACAATAAGACATGACGGCA+AGG + chr3_4:69878535-69878554 None:intergenic 45.0%
TAAAGCCTCAAAGTGAAGCG+AGG - chr3_4:69879072-69879091 Msa0518060:intron 45.0%
AGAACAGCATTAAGGGACGT+AGG + chr3_4:69879134-69879153 None:intergenic 45.0%
ATACCCGAAGCTATATGGCA+AGG - chr3_4:69879164-69879183 Msa0518060:intron 45.0%
TCCACCTTGCCATATAGCTT+CGG + chr3_4:69879171-69879190 None:intergenic 45.0%
AGAATTTGAGAGGCAGAGAG+TGG + chr3_4:69879203-69879222 None:intergenic 45.0%
TATAAGTGGTGAGCAAACGG+AGG + chr3_4:69879277-69879296 None:intergenic 45.0%
ACTTGAGCAGCAATGGTGAA+AGG - chr3_4:69879312-69879331 Msa0518060:intron 45.0%
ACAGGTCAGACCATCATCAT+CGG + chr3_4:69879375-69879394 None:intergenic 45.0%
CTGGACGAAAAATGATGCAC+AGG + chr3_4:69879393-69879412 None:intergenic 45.0%
! ATTTTTCGTCCAGCACCATC+AGG - chr3_4:69879400-69879419 Msa0518060:intron 45.0%
GATGTCATTGCCCTACATGA+GGG - chr3_4:69880058-69880077 Msa0518060:intron 45.0%
CTCCAACATTTCCCTCATGT+AGG + chr3_4:69880072-69880091 None:intergenic 45.0%
! GTGGAGACTCTAGTTGATGT+TGG - chr3_4:69880113-69880132 Msa0518060:intron 45.0%
! GAGACTCTAGTTGATGTTGG+TGG - chr3_4:69880116-69880135 Msa0518060:intron 45.0%
!! GTTGATGTTGGTGGCAATTC+TGG - chr3_4:69880125-69880144 Msa0518060:intron 45.0%
GGTGCAGAAGAGATCATATC+GGG + chr3_4:69880215-69880234 None:intergenic 45.0%
TCTTCTGCACCTCAATATCC+AGG - chr3_4:69880224-69880243 Msa0518060:intron 45.0%
ATAGGTATAACACACGTCGG+TGG - chr3_4:69880434-69880453 Msa0518060:intron 45.0%
ATGAAGATAGCATCTCCAGC+CGG + chr3_4:69880479-69880498 None:intergenic 45.0%
AGTTAGAGACTGGAACGAGT+TGG - chr3_4:69881039-69881058 Msa0518060:intron 45.0%
GTTAGAGACTGGAACGAGTT+GGG - chr3_4:69881040-69881059 Msa0518060:intron 45.0%
TTAGAGACTGGAACGAGTTG+GGG - chr3_4:69881041-69881060 Msa0518060:intron 45.0%
! TGGGGTTGATCACAACTTGT+TGG + chr3_4:69881217-69881236 None:intergenic 45.0%
!! TGTTGGATTTGGTTTGGCCT+CGG + chr3_4:69881260-69881279 None:intergenic 45.0%
! GCTTCCTGTTGGATTTGGTT+TGG + chr3_4:69881266-69881285 None:intergenic 45.0%
! AGTTGGCTTCCTGTTGGATT+TGG + chr3_4:69881271-69881290 None:intergenic 45.0%
GGTGGCTTATGTATTCATGG+TGG + chr3_4:69881333-69881352 None:intergenic 45.0%
GCTTCCATGTTGTTGAATCG+TGG - chr3_4:69881429-69881448 Msa0518060:intron 45.0%
TTCTGCAACACACACAACGA+CGG - chr3_4:69881498-69881517 Msa0518060:intron 45.0%
CACAATCAAGTGGCTCAACT+AGG - chr3_4:69882501-69882520 Msa0518060:intron 45.0%
TGCACGAAGACAAGCAAATG+AGG + chr3_4:69882576-69882595 None:intergenic 45.0%
TGCAGTGGACAGTGTTAACA+TGG - chr3_4:69882875-69882894 Msa0518060:CDS 45.0%
GGCCTTGCAAAGTTGTTACA+AGG - chr3_4:69882918-69882937 Msa0518060:five_prime_UTR 45.0%
! AGAATCAATTTTCCGGCCAC+CGG + chr3_4:69882949-69882968 None:intergenic 45.0%
!! GAAGAAGGCTTTGAAGTGTG+TGG - chr3_4:69883183-69883202 Msa0518060:five_prime_UTR 45.0%
! CCAACTTTCGTTGGTTGCAA+TGG + chr3_4:69883382-69883401 None:intergenic 45.0%
CCATTGCAACCAACGAAAGT+TGG - chr3_4:69883379-69883398 Msa0518060:five_prime_UTR 45.0%
GATCTAAGCCCAACTTTCGT+TGG + chr3_4:69883391-69883410 None:intergenic 45.0%
!!! TTTTTATTTTAATTTATCTA+AGG + chr3_4:69880806-69880825 None:intergenic 5.0%
!! AATACAAAAAAAAAAAAAAT+TGG - chr3_4:69882230-69882249 Msa0518060:intron 5.0%
GGAGAATGGGAAAGTTGCTG+TGG - chr3_4:69879049-69879068 Msa0518060:CDS 50.0%
!! TGAAGCGAGGCTTGCCATTT+TGG - chr3_4:69879085-69879104 Msa0518060:intron 50.0%
CCACCTTGCCATATAGCTTC+GGG + chr3_4:69879170-69879189 None:intergenic 50.0%
TGAGCAAACGGAGGATACGT+TGG + chr3_4:69879268-69879287 None:intergenic 50.0%
GTTGAGGACTTGAGCAGCAA+TGG - chr3_4:69879305-69879324 Msa0518060:intron 50.0%
AAGTACTCCCTCACCGATGT+CGG - chr3_4:69879335-69879354 Msa0518060:intron 50.0%
AGCTTTACCGACATCGGTGA+GGG + chr3_4:69879345-69879364 None:intergenic 50.0%
GCTCTTGTTCCCGATGATGA+TGG - chr3_4:69879362-69879381 Msa0518060:intron 50.0%
CAGGTCAGACCATCATCATC+GGG + chr3_4:69879374-69879393 None:intergenic 50.0%
TTCTCGAACGGTTCCACAGT+TGG + chr3_4:69879960-69879979 None:intergenic 50.0%
CATGTAGGGCAATGACATCC+CGG + chr3_4:69880057-69880076 None:intergenic 50.0%
GGATGTCATTGCCCTACATG+AGG - chr3_4:69880057-69880076 Msa0518060:intron 50.0%
GCCCTACATGAGGGAAATGT+TGG - chr3_4:69880067-69880086 Msa0518060:intron 50.0%
! TGTTGGGTTGTGCTTGTGGT+GGG + chr3_4:69881006-69881025 None:intergenic 50.0%
! TTGTTGGGTTGTGCTTGTGG+TGG + chr3_4:69881007-69881026 None:intergenic 50.0%
!! GGTTTGTTGGGTTGTGCTTG+TGG + chr3_4:69881010-69881029 None:intergenic 50.0%
! ACTCGTGCTGCAGGTTTGTT+GGG + chr3_4:69881022-69881041 None:intergenic 50.0%
AACTCGTGCTGCAGGTTTGT+TGG + chr3_4:69881023-69881042 None:intergenic 50.0%
!! GATTTGGTTTGGCCTCGGAT+TGG + chr3_4:69881255-69881274 None:intergenic 50.0%
GAGGCCAAACCAAATCCAAC+AGG - chr3_4:69881259-69881278 Msa0518060:intron 50.0%
GTTGTGGTTCGATCTCAAGG+TGG + chr3_4:69881351-69881370 None:intergenic 50.0%
! GTCATGGGTCTCGTTTGTTG+TGG + chr3_4:69881407-69881426 None:intergenic 50.0%
CGTGGAAGACATTGAACCCA+TGG - chr3_4:69881447-69881466 Msa0518060:CDS 50.0%
! GCTGTTGTTCGCGTGGTTTT+GGG + chr3_4:69881473-69881492 None:intergenic 50.0%
! TGCTGTTGTTCGCGTGGTTT+TGG + chr3_4:69881474-69881493 None:intergenic 50.0%
! AACTGTTGCTGTTGTTCGCG+TGG + chr3_4:69881480-69881499 None:intergenic 50.0%
!! ATGGGTTCGTGGCACTGATT+CGG + chr3_4:69881555-69881574 None:intergenic 50.0%
ATAGCTCAGACATGGGTTCG+TGG + chr3_4:69881566-69881585 None:intergenic 50.0%
TTGTTACAAGGCTCTTCCGG+TGG - chr3_4:69882930-69882949 Msa0518060:five_prime_UTR 50.0%
!! TCTTTGTGAACCGGTGTTGC+CGG - chr3_4:69882966-69882985 Msa0518060:five_prime_UTR 50.0%
TTACTCTCATCGGTCTGCTC+CGG + chr3_4:69882988-69883007 None:intergenic 50.0%
CATTGTTGGCGGCTGACATA+TGG - chr3_4:69883019-69883038 Msa0518060:five_prime_UTR 50.0%
GCAAGCCTCGCTTCACTTTG+AGG + chr3_4:69879080-69879099 None:intergenic 55.0%
CCCGAAGCTATATGGCAAGG+TGG - chr3_4:69879167-69879186 Msa0518060:intron 55.0%
CTCTCCATAGTCCGTCCCAA+TGG - chr3_4:69879221-69879240 Msa0518060:intron 55.0%
TCCATAGTCCGTCCCAATGG+CGG - chr3_4:69879224-69879243 Msa0518060:intron 55.0%
GAGCTTTACCGACATCGGTG+AGG + chr3_4:69879346-69879365 None:intergenic 55.0%
GAACCGTTCGAGAAGCTGCA+CGG - chr3_4:69879966-69879985 Msa0518060:intron 55.0%
TCTCCGTGCAGCTTCTCGAA+CGG + chr3_4:69879972-69879991 None:intergenic 55.0%
GCACTTGAATCAGTTCCGGC+TGG - chr3_4:69880461-69880480 Msa0518060:intron 55.0%
CAGTCTCTAACTCGTGCTGC+AGG + chr3_4:69881031-69881050 None:intergenic 55.0%
CTGCAGCACGAGTTAGAGAC+TGG - chr3_4:69881029-69881048 Msa0518060:intron 55.0%
!!! TTCGCGTGGTTTTGGGCCAT+GGG + chr3_4:69881466-69881485 None:intergenic 55.0%
!! TCCGCCATTGGGACGGACTA+TGG + chr3_4:69879228-69879247 None:intergenic 60.0%
ATAGTCCGTCCCAATGGCGG+AGG - chr3_4:69879227-69879246 Msa0518060:intron 60.0%
TCAGCGTCTCCTCCGCCATT+GGG + chr3_4:69879239-69879258 None:intergenic 60.0%
TTCAGCGTCTCCTCCGCCAT+TGG + chr3_4:69879240-69879259 None:intergenic 60.0%
AACGGCCATGCTCGCAGGTA+CGG + chr3_4:69879915-69879934 None:intergenic 60.0%
TCCACTGCGTCTCCCACCAA+CGG + chr3_4:69879933-69879952 None:intergenic 60.0%
CGCAGTGGAGGATCCAACTG+TGG - chr3_4:69879944-69879963 Msa0518060:intron 60.0%
GGGCAATGACATCCCGGACA+TGG + chr3_4:69880051-69880070 None:intergenic 60.0%
!!! GTTCGCGTGGTTTTGGGCCA+TGG + chr3_4:69881467-69881486 None:intergenic 60.0%
TACAAGGCTCTTCCGGTGGC+CGG - chr3_4:69882934-69882953 Msa0518060:five_prime_UTR 60.0%
CGTCTCCTCCGCCATTGGGA+CGG + chr3_4:69879235-69879254 None:intergenic 65.0%
AGGACCCGTACCTGCGAGCA+TGG - chr3_4:69879907-69879926 Msa0518060:intron 65.0%
ACGGCCATGCTCGCAGGTAC+GGG + chr3_4:69879914-69879933 None:intergenic 65.0%
GTACCTGCGAGCATGGCCGT+TGG - chr3_4:69879914-69879933 Msa0518060:intron 65.0%
CTGCGAGCATGGCCGTTGGT+GGG - chr3_4:69879918-69879937 Msa0518060:intron 65.0%
! GTTGGTGGGAGACGCAGTGG+AGG - chr3_4:69879932-69879951 Msa0518060:intron 65.0%
TCGGTCTGCTCCGGCAACAC+CGG + chr3_4:69882979-69882998 None:intergenic 65.0%
CCACCAACGGCCATGCTCGC+AGG + chr3_4:69879920-69879939 None:intergenic 70.0%
CCTGCGAGCATGGCCGTTGG+TGG - chr3_4:69879917-69879936 Msa0518060:intron 70.0%
! GCCGTTGGTGGGAGACGCAG+TGG - chr3_4:69879929-69879948 Msa0518060:intron 70.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 69878481 69883467 69878481 ID=Msa0518060;Name=Msa0518060
chr3_4 mRNA 69878481 69883467 69878481 ID=Msa0518060-mRNA-1;Parent=Msa0518060;Name=Msa0518060-mRNA-1;_AED=0.37;_eAED=0.37;_QI=566|1|1|1|0.75|0.6|5|261|358
chr3_4 exon 69878481 69878679 69878481 ID=Msa0518060-mRNA-1:exon:18794;Parent=Msa0518060-mRNA-1
chr3_4 exon 69878707 69879068 69878707 ID=Msa0518060-mRNA-1:exon:18793;Parent=Msa0518060-mRNA-1
chr3_4 exon 69881446 69881510 69881446 ID=Msa0518060-mRNA-1:exon:18792;Parent=Msa0518060-mRNA-1
chr3_4 exon 69881703 69882039 69881703 ID=Msa0518060-mRNA-1:exon:18791;Parent=Msa0518060-mRNA-1
chr3_4 exon 69882527 69883467 69882527 ID=Msa0518060-mRNA-1:exon:18790;Parent=Msa0518060-mRNA-1
chr3_4 five_prime_UTR 69882902 69883467 69882902 ID=Msa0518060-mRNA-1:five_prime_utr;Parent=Msa0518060-mRNA-1
chr3_4 CDS 69882527 69882901 69882527 ID=Msa0518060-mRNA-1:cds;Parent=Msa0518060-mRNA-1
chr3_4 CDS 69881703 69882039 69881703 ID=Msa0518060-mRNA-1:cds;Parent=Msa0518060-mRNA-1
chr3_4 CDS 69881446 69881510 69881446 ID=Msa0518060-mRNA-1:cds;Parent=Msa0518060-mRNA-1
chr3_4 CDS 69878769 69879068 69878769 ID=Msa0518060-mRNA-1:cds;Parent=Msa0518060-mRNA-1
chr3_4 three_prime_UTR 69878707 69878768 69878707 ID=Msa0518060-mRNA-1:three_prime_utr;Parent=Msa0518060-mRNA-1
chr3_4 three_prime_UTR 69878481 69878679 69878481 ID=Msa0518060-mRNA-1:three_prime_utr;Parent=Msa0518060-mRNA-1
Gene Sequence

>Msa0518060

ATGGAGAATGGGAAAGTTGCTGTGGTAAAGCCTCAAAGTGAAGCGAGGCTTGCCATTTTGGAACTTGCACACATTATGAGTGTTCCTACGTCCCTTAATGCTGTTCTCAAAATGAAAATACCCGAAGCTATATGGCAAGGTGGAAAGAACACTCCACTCTCTGCCTCTCAAATTCTCTCCATAGTCCGTCCCAATGGCGGAGGAGACGCTGAAAATCTCCAACGTATCCTCCGTTTGCTCACCACTTATACTATTTTTGTTGAGGACTTGAGCAGCAATGGTGAAAGGAAGTACTCCCTCACCGATGTCGGTAAAGCTCTTGTTCCCGATGATGATGGTCTGACCTGTGCATCATTTTTCGTCCAGCACCATCAGGACCCGTACCTGCGAGCATGGCCGTTGGTGGGAGACGCAGTGGAGGATCCAACTGTGGAACCGTTCGAGAAGCTGCACGGAGAAGCAGCATATGCATATTGCACAAAGGGACCAGAAGAAATGAGTTTGTTTTATGCTTCCATGTCCGGGATGTCATTGCCCTACATGAGGGAAATGTTGGAGAATTATGATGGCTTCAAAGGTGTGGAGACTCTAGTTGATGTTGGTGGCAATTCTGGTGTGAGTCTCAACATGATTATGAACAAATATCCAAACATACTCAAAGGCATCAATTTTGATCTTCCCGATATGATCTCTTCTGCACCTCAATATCCAGGTATAACACACGTCGGTGGTGATGCACTTGAATCAGTTCCGGCTGGAGATGCTATCTTCATTAAGTGGACAGTGTTAACATGGACAGATGAAGAATTCAAGAAGGCCTTGCAAAGTTGTTACAAGGCTCTTCCGGTGGCCGGAAAATTGATTCTTTGTGAACCGGTGTTGCCGGAGCAGACCGATGAGAGTAAAAGAACAAGAGCATTGTTGGCGGCTGACATATGGATAATGACAATGTATAGAACTAAGGGAAAACACAGAACCGAAGAAGAATTCAAACAACTTGGCATTTCTGCTGGTTTTAAAAGTTTTCGTGCCTTCCATATTGATCCTTATTTGCCTGTACTTGAATTTCATAAATGA
Protein sequence

>Msa0518060

MENGKVAVVKPQSEARLAILELAHIMSVPTSLNAVLKMKIPEAIWQGGKNTPLSASQILSIVRPNGGGDAENLQRILRLLTTYTIFVEDLSSNGERKYSLTDVGKALVPDDDGLTCASFFVQHHQDPYLRAWPLVGDAVEDPTVEPFEKLHGEAAYAYCTKGPEEMSLFYASMSGMSLPYMREMLENYDGFKGVETLVDVGGNSGVSLNMIMNKYPNILKGINFDLPDMISSAPQYPGITHVGGDALESVPAGDAIFIKWTVLTWTDEEFKKALQSCYKALPVAGKLILCEPVLPEQTDESKRTRALLAADIWIMTMYRTKGKHRTEEEFKQLGISAGFKSFRAFHIDPYLPVLEFHK*