Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0379400 | XP_003602845.1 | 72.917 | 48 | 13 | 0 | 180 | 227 | 8 | 55 | 9.07e-14 | 79.3 |
| Msa0379400 | XP_003602845.1 | 77.838 | 185 | 35 | 3 | 1 | 185 | 1 | 179 | 7.80e-84 | 259 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0379400 | sp|Q41001|BCP_PEA | 70.811 | 185 | 50 | 4 | 1 | 183 | 1 | 183 | 2.01e-73 | 226 |
| Msa0379400 | sp|Q41001|BCP_PEA | 60.000 | 50 | 20 | 0 | 178 | 227 | 7 | 56 | 3.57e-12 | 67.0 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0379400 | G7J401 | 72.917 | 48 | 13 | 0 | 180 | 227 | 8 | 55 | 4.33e-14 | 79.3 |
| Msa0379400 | G7J401 | 77.838 | 185 | 35 | 3 | 1 | 185 | 1 | 179 | 3.72e-84 | 259 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0379400 | Msa0379440 | 0.944221 | 2.901165e-103 | -8.615850e-47 |
| Msa0379400 | Msa0475290 | 0.913507 | 5.681416e-84 | -8.615850e-47 |
| Msa0379400 | Msa1037550 | 0.828988 | 6.617530e-55 | -8.615850e-47 |
| Msa0379400 | Msa1130430 | 0.816538 | 5.251449e-52 | -8.615850e-47 |
| Msa0379400 | Msa1363340 | 0.800008 | 1.762653e-48 | -8.615850e-47 |
| Msa0379400 | Msa1386610 | 0.800379 | 1.481788e-48 | -8.615850e-47 |
| Msa0379400 | Msa1446110 | 0.823105 | 1.656813e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0379400 | MtrunA17_Chr3g0132431 | 77.838 | 185 | 35 | 3 | 1 | 185 | 1 | 179 | 7.17e-88 | 259 |
| Msa0379400 | MtrunA17_Chr3g0132431 | 72.917 | 48 | 13 | 0 | 180 | 227 | 8 | 55 | 8.34e-18 | 79.3 |
| Msa0379400 | MtrunA17_Chr3g0132441 | 82.292 | 192 | 27 | 3 | 1 | 190 | 1 | 187 | 1.84e-86 | 256 |
| Msa0379400 | MtrunA17_Chr3g0132441 | 57.895 | 57 | 18 | 1 | 171 | 227 | 5 | 55 | 3.10e-13 | 66.6 |
| Msa0379400 | MtrunA17_Chr3g0132511 | 61.187 | 219 | 40 | 4 | 7 | 185 | 6 | 219 | 1.31e-68 | 211 |
| Msa0379400 | MtrunA17_Chr3g0132511 | 61.667 | 60 | 17 | 1 | 168 | 227 | 2 | 55 | 9.78e-16 | 74.3 |
| Msa0379400 | MtrunA17_Chr3g0132701 | 61.927 | 218 | 40 | 4 | 7 | 186 | 6 | 218 | 4.87e-68 | 210 |
| Msa0379400 | MtrunA17_Chr3g0132701 | 61.667 | 60 | 17 | 1 | 168 | 227 | 2 | 55 | 8.90e-16 | 74.3 |
| Msa0379400 | MtrunA17_Chr3g0132411 | 66.929 | 127 | 42 | 0 | 1 | 127 | 39 | 165 | 6.58e-55 | 175 |
| Msa0379400 | MtrunA17_Chr3g0132411 | 41.379 | 87 | 42 | 2 | 141 | 227 | 17 | 94 | 2.57e-12 | 63.9 |
| Msa0379400 | MtrunA17_Chr8g0335531 | 45.902 | 183 | 91 | 6 | 7 | 184 | 4 | 183 | 1.43e-39 | 136 |
| Msa0379400 | MtrunA17_Chr8g0335571 | 56.303 | 119 | 48 | 3 | 5 | 120 | 2 | 119 | 4.09e-38 | 132 |
| Msa0379400 | MtrunA17_Chr1g0196801 | 35.625 | 160 | 96 | 2 | 24 | 182 | 20 | 173 | 3.57e-31 | 114 |
| Msa0379400 | MtrunA17_Chr4g0064041 | 36.948 | 249 | 125 | 6 | 25 | 261 | 27 | 255 | 2.28e-30 | 117 |
| Msa0379400 | MtrunA17_Chr4g0064041 | 49.495 | 99 | 45 | 2 | 27 | 120 | 191 | 289 | 3.77e-24 | 100 |
| Msa0379400 | MtrunA17_Chr5g0394321 | 41.497 | 147 | 77 | 6 | 13 | 154 | 10 | 152 | 3.62e-28 | 106 |
| Msa0379400 | MtrunA17_Chr2g0323021 | 40.816 | 147 | 77 | 4 | 13 | 151 | 12 | 156 | 3.37e-26 | 102 |
| Msa0379400 | MtrunA17_Chr6g0481491 | 45.455 | 99 | 54 | 0 | 27 | 125 | 28 | 126 | 9.55e-25 | 98.6 |
| Msa0379400 | MtrunA17_Chr2g0306461 | 38.710 | 124 | 73 | 1 | 3 | 123 | 4 | 127 | 7.24e-24 | 95.9 |
| Msa0379400 | MtrunA17_Chr1g0211101 | 32.653 | 147 | 86 | 4 | 3 | 136 | 7 | 153 | 5.68e-23 | 92.8 |
| Msa0379400 | MtrunA17_Chr1g0205701 | 38.525 | 122 | 70 | 5 | 1 | 119 | 1 | 120 | 7.92e-23 | 92.8 |
| Msa0379400 | MtrunA17_Chr6g0459441 | 44.000 | 100 | 55 | 1 | 21 | 119 | 20 | 119 | 1.57e-22 | 91.7 |
| Msa0379400 | MtrunA17_Chr7g0253701 | 41.935 | 124 | 63 | 4 | 1 | 119 | 1 | 120 | 1.47e-21 | 88.6 |
| Msa0379400 | MtrunA17_Chr7g0253671 | 41.935 | 124 | 63 | 4 | 1 | 119 | 1 | 120 | 1.47e-21 | 88.6 |
| Msa0379400 | MtrunA17_Chr4g0033131 | 37.692 | 130 | 74 | 4 | 3 | 125 | 4 | 133 | 4.48e-21 | 87.8 |
| Msa0379400 | MtrunA17_Chr4g0033531 | 37.692 | 130 | 74 | 4 | 3 | 125 | 4 | 133 | 4.48e-21 | 87.8 |
| Msa0379400 | MtrunA17_Chr7g0253681 | 38.843 | 121 | 72 | 2 | 1 | 119 | 1 | 121 | 1.39e-20 | 85.9 |
| Msa0379400 | MtrunA17_Chr1g0177341 | 39.286 | 112 | 63 | 3 | 13 | 119 | 8 | 119 | 2.55e-20 | 85.1 |
| Msa0379400 | MtrunA17_Chr1g0177331 | 39.286 | 112 | 63 | 3 | 13 | 119 | 8 | 119 | 2.55e-20 | 85.1 |
| Msa0379400 | MtrunA17_Chr8g0387804 | 40.777 | 103 | 57 | 2 | 24 | 122 | 26 | 128 | 1.89e-19 | 82.0 |
| Msa0379400 | MtrunA17_Chr2g0301431 | 41.026 | 117 | 62 | 4 | 7 | 122 | 15 | 125 | 6.97e-19 | 80.5 |
| Msa0379400 | MtrunA17_Chr7g0253731 | 36.290 | 124 | 69 | 4 | 1 | 119 | 1 | 119 | 1.93e-18 | 80.1 |
| Msa0379400 | MtrunA17_Chr4g0041811 | 39.130 | 115 | 65 | 2 | 10 | 119 | 15 | 129 | 2.60e-18 | 81.3 |
| Msa0379400 | MtrunA17_Chr6g0483981 | 34.783 | 184 | 108 | 7 | 1 | 172 | 1 | 184 | 2.61e-18 | 84.3 |
| Msa0379400 | MtrunA17_Chr7g0253631 | 37.600 | 125 | 72 | 3 | 1 | 122 | 1 | 122 | 3.53e-18 | 81.6 |
| Msa0379400 | MtrunA17_Chr7g0253641 | 38.333 | 120 | 72 | 2 | 1 | 119 | 1 | 119 | 6.47e-18 | 80.5 |
| Msa0379400 | MtrunA17_Chr2g0289741 | 32.653 | 147 | 83 | 3 | 16 | 160 | 16 | 148 | 1.50e-17 | 78.2 |
| Msa0379400 | MtrunA17_Chr8g0360371 | 35.606 | 132 | 79 | 4 | 12 | 139 | 8 | 137 | 1.55e-17 | 80.9 |
| Msa0379400 | MtrunA17_Chr2g0319611 | 41.837 | 98 | 50 | 2 | 29 | 119 | 28 | 125 | 2.89e-17 | 79.3 |
| Msa0379400 | MtrunA17_Chr3g0125791 | 43.434 | 99 | 52 | 3 | 24 | 121 | 30 | 125 | 6.95e-17 | 75.1 |
| Msa0379400 | MtrunA17_Chr7g0253761 | 36.667 | 120 | 74 | 2 | 1 | 119 | 1 | 119 | 8.11e-17 | 76.3 |
| Msa0379400 | MtrunA17_Chr4g0062341 | 30.345 | 145 | 88 | 4 | 13 | 151 | 24 | 161 | 1.19e-16 | 75.9 |
| Msa0379400 | MtrunA17_Chr4g0062311 | 30.345 | 145 | 88 | 4 | 13 | 151 | 24 | 161 | 1.19e-16 | 75.9 |
| Msa0379400 | MtrunA17_Chr4g0039721 | 28.221 | 163 | 109 | 3 | 2 | 158 | 7 | 167 | 3.06e-16 | 74.7 |
| Msa0379400 | MtrunA17_Chr6g0453921 | 36.641 | 131 | 75 | 6 | 8 | 134 | 20 | 146 | 5.14e-16 | 74.3 |
| Msa0379400 | MtrunA17_Chr2g0324711 | 36.134 | 119 | 69 | 3 | 8 | 119 | 2 | 120 | 1.47e-15 | 75.9 |
| Msa0379400 | MtrunA17_Chr4g0001571 | 39.000 | 100 | 59 | 2 | 21 | 119 | 23 | 121 | 2.28e-15 | 72.4 |
| Msa0379400 | MtrunA17_Chr6g0458331 | 36.893 | 103 | 59 | 3 | 24 | 121 | 34 | 135 | 1.13e-14 | 70.1 |
| Msa0379400 | MtrunA17_Chr2g0331181 | 33.784 | 148 | 83 | 5 | 7 | 141 | 3 | 148 | 1.62e-14 | 70.5 |
| Msa0379400 | MtrunA17_Chr2g0324721 | 35.971 | 139 | 76 | 5 | 29 | 157 | 29 | 164 | 2.42e-14 | 70.1 |
| Msa0379400 | MtrunA17_Chr4g0040291 | 32.278 | 158 | 94 | 5 | 29 | 178 | 27 | 179 | 3.82e-14 | 69.3 |
| Msa0379400 | MtrunA17_Chr3g0136871 | 35.417 | 96 | 61 | 1 | 42 | 136 | 47 | 142 | 1.00e-13 | 67.8 |
| Msa0379400 | MtrunA17_Chr1g0150131 | 37.624 | 101 | 57 | 2 | 42 | 136 | 45 | 145 | 1.69e-13 | 67.4 |
| Msa0379400 | MtrunA17_Chr8g0380711 | 38.835 | 103 | 54 | 5 | 24 | 122 | 25 | 122 | 4.64e-13 | 64.7 |
| Msa0379400 | MtrunA17_Chr8g0385021 | 29.016 | 193 | 109 | 6 | 8 | 172 | 1 | 193 | 5.61e-13 | 67.4 |
| Msa0379400 | MtrunA17_Chr4g0073921 | 34.127 | 126 | 75 | 5 | 1 | 119 | 3 | 127 | 8.75e-13 | 67.0 |
| Msa0379400 | MtrunA17_Chr8g0385031 | 31.250 | 176 | 98 | 6 | 8 | 164 | 1 | 172 | 1.39e-12 | 66.6 |
| Msa0379400 | MtrunA17_Chr4g0073901 | 32.000 | 125 | 79 | 3 | 1 | 119 | 3 | 127 | 2.86e-12 | 63.9 |
| Msa0379400 | MtrunA17_Chr8g0385041 | 36.458 | 96 | 55 | 3 | 28 | 119 | 26 | 119 | 3.82e-12 | 65.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0379400 | AT1G72230.1 | 47.208 | 197 | 81 | 5 | 3 | 192 | 1 | 181 | 6.27e-48 | 157 |
| Msa0379400 | AT1G22480.1 | 61.290 | 93 | 36 | 0 | 35 | 127 | 27 | 119 | 3.26e-34 | 122 |
| Msa0379400 | AT2G32300.1 | 41.727 | 139 | 77 | 2 | 22 | 159 | 21 | 156 | 9.82e-30 | 113 |
| Msa0379400 | AT2G32300.2 | 41.727 | 139 | 77 | 2 | 22 | 159 | 51 | 186 | 2.60e-29 | 112 |
| Msa0379400 | AT3G60270.1 | 46.465 | 99 | 53 | 0 | 22 | 120 | 21 | 119 | 1.04e-25 | 100 |
| Msa0379400 | AT5G07475.1 | 38.776 | 147 | 82 | 3 | 24 | 170 | 27 | 165 | 4.18e-25 | 99.4 |
| Msa0379400 | AT3G27200.1 | 40.984 | 122 | 66 | 3 | 1 | 119 | 1 | 119 | 5.24e-25 | 98.6 |
| Msa0379400 | AT2G26720.1 | 35.882 | 170 | 105 | 4 | 25 | 190 | 27 | 196 | 7.05e-25 | 99.0 |
| Msa0379400 | AT2G31050.1 | 45.133 | 113 | 59 | 3 | 25 | 135 | 27 | 138 | 4.33e-24 | 96.7 |
| Msa0379400 | AT2G44790.1 | 48.936 | 94 | 46 | 1 | 35 | 126 | 36 | 129 | 4.23e-23 | 94.4 |
| Msa0379400 | AT5G26330.1 | 42.991 | 107 | 58 | 2 | 24 | 127 | 21 | 127 | 2.51e-22 | 91.7 |
| Msa0379400 | AT3G17675.1 | 36.792 | 106 | 66 | 1 | 18 | 122 | 23 | 128 | 9.06e-20 | 83.2 |
| Msa0379400 | AT3G60280.1 | 42.268 | 97 | 56 | 0 | 23 | 119 | 20 | 116 | 8.10e-19 | 83.2 |
| Msa0379400 | AT2G25060.1 | 40.351 | 114 | 62 | 3 | 28 | 135 | 32 | 145 | 1.09e-16 | 76.6 |
| Msa0379400 | AT5G20230.1 | 36.047 | 172 | 89 | 5 | 27 | 177 | 25 | 196 | 1.11e-16 | 76.6 |
| Msa0379400 | AT4G31840.1 | 34.459 | 148 | 89 | 4 | 3 | 142 | 1 | 148 | 1.70e-16 | 75.9 |
| Msa0379400 | AT5G53870.2 | 32.086 | 187 | 102 | 6 | 7 | 173 | 7 | 188 | 5.52e-16 | 77.4 |
| Msa0379400 | AT5G53870.1 | 34.177 | 158 | 92 | 5 | 28 | 173 | 31 | 188 | 8.33e-16 | 77.0 |
| Msa0379400 | AT1G64640.1 | 36.522 | 115 | 69 | 2 | 24 | 134 | 30 | 144 | 1.56e-15 | 73.6 |
| Msa0379400 | AT3G18590.1 | 33.858 | 127 | 77 | 2 | 1 | 121 | 1 | 126 | 2.92e-15 | 72.8 |
| Msa0379400 | AT4G27520.1 | 34.746 | 118 | 69 | 3 | 10 | 119 | 9 | 126 | 3.55e-14 | 72.0 |
| Msa0379400 | AT5G57920.1 | 39.241 | 79 | 47 | 1 | 42 | 119 | 43 | 121 | 4.43e-14 | 69.3 |
| Msa0379400 | AT5G15350.1 | 35.246 | 122 | 72 | 4 | 8 | 123 | 7 | 127 | 4.65e-14 | 68.9 |
| Msa0379400 | AT5G57920.2 | 39.241 | 79 | 47 | 1 | 42 | 119 | 42 | 120 | 9.92e-14 | 68.2 |
| Msa0379400 | AT5G57920.3 | 39.241 | 79 | 47 | 1 | 42 | 119 | 75 | 153 | 1.01e-13 | 68.9 |
| Msa0379400 | AT4G28365.1 | 32.895 | 152 | 92 | 5 | 29 | 175 | 31 | 177 | 1.59e-13 | 68.2 |
| Msa0379400 | AT1G45063.2 | 35.965 | 114 | 64 | 5 | 26 | 133 | 148 | 258 | 2.83e-13 | 68.6 |
| Msa0379400 | AT5G14345.1 | 30.952 | 126 | 81 | 2 | 13 | 133 | 2 | 126 | 2.95e-13 | 66.2 |
| Msa0379400 | AT1G45063.1 | 35.965 | 114 | 64 | 5 | 26 | 133 | 148 | 258 | 3.39e-13 | 69.3 |
| Msa0379400 | AT4G12880.1 | 34.188 | 117 | 70 | 5 | 7 | 119 | 10 | 123 | 6.78e-13 | 65.1 |
| Msa0379400 | AT4G30590.1 | 36.709 | 79 | 49 | 1 | 42 | 119 | 48 | 126 | 1.01e-12 | 65.9 |
| Msa0379400 | AT2G02850.1 | 39.216 | 102 | 52 | 4 | 24 | 121 | 33 | 128 | 3.67e-12 | 62.8 |
| Msa0379400 | AT1G48940.1 | 32.500 | 120 | 74 | 3 | 8 | 121 | 7 | 125 | 7.31e-12 | 63.2 |
| Msa0379400 | AT3G53330.1 | 31.746 | 126 | 77 | 5 | 23 | 142 | 184 | 306 | 7.46e-12 | 65.1 |
| Msa0379400 | AT4G32490.1 | 32.000 | 100 | 65 | 2 | 29 | 125 | 33 | 132 | 3.64e-11 | 62.0 |
| Msa0379400 | AT3G20570.1 | 32.558 | 172 | 102 | 5 | 9 | 169 | 15 | 183 | 6.53e-11 | 60.8 |
| Msa0379400 | AT1G79800.1 | 32.479 | 117 | 66 | 3 | 29 | 133 | 36 | 151 | 6.75e-11 | 60.8 |
Find 82 sgRNAs with CRISPR-Local
Find 325 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGTGTGGTGGTGGTTGCAGC+TGG | 0.209492 | 3_1:-80520510 | None:intergenic |
| CTTCTTCTTAGCAATTAATA+TGG | 0.256926 | 3_1:+80519931 | Msa0379400:CDS |
| AGTGGTGGTGGTGGAGGGTG+TGG | 0.258082 | 3_1:-80520526 | None:intergenic |
| GGTGGTGGAGGGTGTGGTGG+TGG | 0.288673 | 3_1:-80520520 | None:intergenic |
| CACTATGGCATTGCCGACTA+TGG | 0.299229 | 3_1:+80524281 | Msa0379400:CDS |
| GGTGGTGGTGGAGGGTGTGG+TGG | 0.299929 | 3_1:-80520523 | None:intergenic |
| GGAAGGAGTGGTGGTGGTGG+AGG | 0.314330 | 3_1:-80520532 | None:intergenic |
| TACTTCATATGTGCTGTTCC+TGG | 0.349993 | 3_1:+80520372 | Msa0379400:CDS |
| CACATTGTTGGAGATGGTTT+AGG | 0.350314 | 3_1:+80524312 | Msa0379400:CDS |
| GATAAATCAGGTTGGGCAAT+TGG | 0.365257 | 3_1:+80519989 | Msa0379400:CDS |
| GACTATAAATCATGCACAAC+TGG | 0.368543 | 3_1:+80520285 | Msa0379400:CDS |
| GTGTGGTGGTGGTTGCAGCT+GGG | 0.370931 | 3_1:-80520509 | None:intergenic |
| ACTATGACAGTGTTCAACTA+TGG | 0.385966 | 3_1:+80520228 | Msa0379400:intron |
| GAAGGAGTGGTGGTGGTGGA+GGG | 0.390042 | 3_1:-80520531 | None:intergenic |
| TGTGGAAGGAGTGGTGGTGG+TGG | 0.402692 | 3_1:-80520535 | None:intergenic |
| GATCTCTATCCGTCATATAT+TGG | 0.416236 | 3_1:+80525015 | Msa0379400:CDS |
| GATGGTTTAGGTTGGACAAT+TGG | 0.425937 | 3_1:+80524324 | Msa0379400:CDS |
| TGTGGTGGTGGTTGCAGCTG+GGG | 0.433694 | 3_1:-80520508 | None:intergenic |
| TCCTGCTTTCTTGAGAGGGA+TGG | 0.445617 | 3_1:-80520343 | None:intergenic |
| CTAGCCCATGTAGTGTAATC+AGG | 0.446116 | 3_1:-80524348 | None:intergenic |
| TCTGCAACACCATCACCATC+AGG | 0.461815 | 3_1:+80520462 | Msa0379400:CDS |
| TATATGACGGATAGAGATCC+AGG | 0.466675 | 3_1:-80525011 | None:intergenic |
| AACAATTGGTGAGATATTAG+TGG | 0.471305 | 3_1:-80524969 | None:intergenic |
| ATGCCACCTGTGCAATGTCC+AGG | 0.481287 | 3_1:-80520390 | None:intergenic |
| GTGTTCCTGCTTTCTTGAGA+GGG | 0.482705 | 3_1:-80520347 | None:intergenic |
| TGTGTTCCTGCTTTCTTGAG+AGG | 0.493116 | 3_1:-80520348 | None:intergenic |
| TTTCTTGAGAGGGATGGTTG+TGG | 0.493786 | 3_1:-80520337 | None:intergenic |
| CACACCGTTGGAGATAAATC+AGG | 0.494660 | 3_1:+80519977 | Msa0379400:CDS |
| GGCTAGTGACAAAACATTTG+CGG | 0.495560 | 3_1:+80520030 | Msa0379400:CDS |
| ATGGCAACAACCCACATTGT+TGG | 0.499388 | 3_1:+80524300 | Msa0379400:CDS |
| TTTGCGGTTGGTGACAGTCT+TGG | 0.500707 | 3_1:+80520046 | Msa0379400:CDS |
| GGTTGCAGCTGGGGTGCCAT+CGG | 0.500842 | 3_1:-80520499 | None:intergenic |
| TTGGTCCTGATTACACTACA+TGG | 0.504799 | 3_1:+80524343 | Msa0379400:CDS |
| CGTTGGAGATAAATCAGGTT+GGG | 0.514147 | 3_1:+80519982 | Msa0379400:CDS |
| GGTGGTGGTTGTTGCGGCAG+CGG | 0.517819 | 3_1:-80524915 | None:intergenic |
| TGTTGCGGCAGCGGTGCGAT+CGG | 0.526820 | 3_1:-80524906 | None:intergenic |
| GCGGCAGCGGTGCGATCGGA+AGG | 0.527471 | 3_1:-80524902 | None:intergenic |
| AAGAAGCCTAAAATCAAAGA+AGG | 0.528032 | 3_1:-80519914 | None:intergenic |
| CTTGCAACTGTCCACACCGT+TGG | 0.529565 | 3_1:+80519965 | Msa0379400:CDS |
| CTGATTACACTACATGGGCT+AGG | 0.529585 | 3_1:+80524349 | Msa0379400:CDS |
| TTGTGTGGAAGGAGTGGTGG+TGG | 0.529906 | 3_1:-80520538 | None:intergenic |
| ACAACCCACATTGTTGGAGA+TGG | 0.532220 | 3_1:+80524306 | Msa0379400:CDS |
| GCAGCTGGGGTGCCATCGGA+AGG | 0.536835 | 3_1:-80520495 | None:intergenic |
| TTTGCAGTTGGTGACAGTCT+CGG | 0.554211 | 3_1:+80524381 | Msa0379400:CDS |
| TGTGGTAGGAGTAGTGGTGG+TGG | 0.559960 | 3_1:-80524930 | None:intergenic |
| ACCATCCCTCTCAAGAAAGC+AGG | 0.564418 | 3_1:+80520342 | Msa0379400:CDS |
| AGGGACAAAACCTTTGCAGT+TGG | 0.564553 | 3_1:+80524369 | Msa0379400:CDS |
| ATGTGGGTTGTTGCCATAGT+CGG | 0.565131 | 3_1:-80524294 | None:intergenic |
| GAACCTTTCCCTGATGGTGA+TGG | 0.566964 | 3_1:-80520471 | None:intergenic |
| GAAGATGCACTTTGTGTGGT+AGG | 0.571193 | 3_1:-80524944 | None:intergenic |
| GTTCCTGGACATTGCACAGG+TGG | 0.574513 | 3_1:+80520387 | Msa0379400:CDS |
| GAAGGTGAACCTTTCCCTGA+TGG | 0.578557 | 3_1:-80520477 | None:intergenic |
| ACAGTGTTCAACTATGGTGC+TGG | 0.581813 | 3_1:+80520234 | Msa0379400:intron |
| TTGTTGGAGATGGTTTAGGT+TGG | 0.586690 | 3_1:+80524316 | Msa0379400:CDS |
| CCAACCTGATTTATCTCCAA+CGG | 0.588831 | 3_1:-80519981 | None:intergenic |
| GTGTGGACAGTTGCAAGAGT+TGG | 0.591396 | 3_1:-80519959 | None:intergenic |
| AGTGACAAAACATTTGCGGT+TGG | 0.594495 | 3_1:+80520034 | Msa0379400:CDS |
| GCTGTTCCTGGACATTGCAC+AGG | 0.594776 | 3_1:+80520384 | Msa0379400:CDS |
| AGTAGTGGTGGTGGTTGTTG+CGG | 0.603984 | 3_1:-80524921 | None:intergenic |
| TGATTACACTACATGGGCTA+GGG | 0.611392 | 3_1:+80524350 | Msa0379400:CDS |
| GATGGTGATGGTGTTGCAGA+AGG | 0.612608 | 3_1:-80520459 | None:intergenic |
| TTGGTTCTGATTATAACACA+TGG | 0.617869 | 3_1:+80520008 | Msa0379400:CDS |
| ACTTTGTGTGGTAGGAGTAG+TGG | 0.618884 | 3_1:-80524936 | None:intergenic |
| AGCTGAAGATGCACTTTGTG+TGG | 0.619201 | 3_1:-80520553 | None:intergenic |
| CTGCAACACCATCACCATCA+GGG | 0.628504 | 3_1:+80520463 | Msa0379400:CDS |
| GAGACTGTCACCAACTGCAA+AGG | 0.629029 | 3_1:-80524379 | None:intergenic |
| TGGTCCTGATTACACTACAT+GGG | 0.630389 | 3_1:+80524344 | Msa0379400:CDS |
| GAAGATGCACTTTGTGTGGA+AGG | 0.630949 | 3_1:-80520549 | None:intergenic |
| TGCACTTTGTGTGGAAGGAG+TGG | 0.632667 | 3_1:-80520544 | None:intergenic |
| CCGTTGGAGATAAATCAGGT+TGG | 0.633245 | 3_1:+80519981 | Msa0379400:CDS |
| TAAACCATCTCCAACAATGT+GGG | 0.636144 | 3_1:-80524310 | None:intergenic |
| GGGAAAGGTTCACCTTCCGA+TGG | 0.642087 | 3_1:+80520483 | Msa0379400:CDS |
| ACTTTGTGTGGAAGGAGTGG+TGG | 0.644852 | 3_1:-80520541 | None:intergenic |
| TATCTCACACCAATATATGA+CGG | 0.646155 | 3_1:-80525024 | None:intergenic |
| TTGTGTGGTAGGAGTAGTGG+TGG | 0.649594 | 3_1:-80524933 | None:intergenic |
| GGTTGAAGATGCACTTTGTG+TGG | 0.654121 | 3_1:-80524948 | None:intergenic |
| ACACCATCACCATCAGGGAA+AGG | 0.655836 | 3_1:+80520468 | Msa0379400:CDS |
| TGGTTCTGATTATAACACAT+GGG | 0.658992 | 3_1:+80520009 | Msa0379400:CDS |
| CTGATTTATCTCCAACGGTG+TGG | 0.663800 | 3_1:-80519976 | None:intergenic |
| CTAAACCATCTCCAACAATG+TGG | 0.675206 | 3_1:-80524311 | None:intergenic |
| TCAATTAGTACAGACAGTAG+TGG | 0.678569 | 3_1:+80520312 | Msa0379400:CDS |
| CTATGGTGCTGGACACACAG+TGG | 0.764173 | 3_1:+80520245 | Msa0379400:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATATATATAAGGAAATT+TGG | + | chr3_1:80523219-80523238 | Msa0379400:intron | 10.0% |
| !!! | ATATTTTTTTGTTATATTGT+TGG | - | chr3_1:80523531-80523550 | None:intergenic | 10.0% |
| !! | ATTATAGAAAAAGTTATTTA+AGG | + | chr3_1:80523593-80523612 | Msa0379400:intron | 10.0% |
| !! | TTATAGAAAAAGTTATTTAA+GGG | + | chr3_1:80523594-80523613 | Msa0379400:intron | 10.0% |
| !!! | TAAATATAAATTGTTTGTTA+TGG | + | chr3_1:80523893-80523912 | Msa0379400:intron | 10.0% |
| !!! | AAATATAAATTGTTTGTTAT+GGG | + | chr3_1:80523894-80523913 | Msa0379400:intron | 10.0% |
| !! | TATATTAGATTTGTAAATTG+TGG | - | chr3_1:80520199-80520218 | None:intergenic | 15.0% |
| !! | AATAGATAATAATGTGAAAA+GGG | - | chr3_1:80520705-80520724 | None:intergenic | 15.0% |
| !! | TAATAGATAATAATGTGAAA+AGG | - | chr3_1:80520706-80520725 | None:intergenic | 15.0% |
| !!! | CTTTTTTTTTTTACTTCTTT+GGG | + | chr3_1:80521039-80521058 | Msa0379400:intron | 15.0% |
| !! | TATTATTATCACTGTTAATA+TGG | - | chr3_1:80521452-80521471 | None:intergenic | 15.0% |
| !! | CAACAAAAAAATTGAATATT+GGG | + | chr3_1:80522793-80522812 | Msa0379400:intron | 15.0% |
| !! | ATCATCAATAACATTATAAT+TGG | + | chr3_1:80522928-80522947 | Msa0379400:intron | 15.0% |
| !! | TATAATATAGATGTAAATTG+TGG | - | chr3_1:80522973-80522992 | None:intergenic | 15.0% |
| !!! | TTGGAAATTTTTATTTTTGA+GGG | + | chr3_1:80523277-80523296 | Msa0379400:intron | 15.0% |
| !!! | AAATGTTTGAAAATTTTGAA+CGG | + | chr3_1:80523394-80523413 | Msa0379400:intron | 15.0% |
| !! | TTACATTGTTTAAATGATAA+AGG | + | chr3_1:80523666-80523685 | Msa0379400:intron | 15.0% |
| !! | ATTATTTGTGTTAAAAATTG+AGG | + | chr3_1:80523794-80523813 | Msa0379400:intron | 15.0% |
| !! | TTATTTGTGTTAAAAATTGA+GGG | + | chr3_1:80523795-80523814 | Msa0379400:intron | 15.0% |
| !!! | AATAAATCAATTGTTTGTTA+TGG | + | chr3_1:80523934-80523953 | Msa0379400:intron | 15.0% |
| !! | GTAGTATTAATTAGTAATCT+AGG | + | chr3_1:80520768-80520787 | Msa0379400:intron | 20.0% |
| !!! | TTACTGAGATTGTTTTTTTT+TGG | + | chr3_1:80520844-80520863 | Msa0379400:intron | 20.0% |
| !!! | TACTGAGATTGTTTTTTTTT+GGG | + | chr3_1:80520845-80520864 | Msa0379400:intron | 20.0% |
| !! | AAAAAAAGGAAAATGTTAAC+CGG | - | chr3_1:80521027-80521046 | None:intergenic | 20.0% |
| !! | CCAAAGAAGTAAAAAAAAAA+AGG | - | chr3_1:80521041-80521060 | None:intergenic | 20.0% |
| !!! | CCTTTTTTTTTTTACTTCTT+TGG | + | chr3_1:80521038-80521057 | Msa0379400:intron | 20.0% |
| !!! | TCAATTCAATTTTTTTTAGG+TGG | + | chr3_1:80521062-80521081 | Msa0379400:intron | 20.0% |
| !!! | TGCATTTTAGACATTATTTT+AGG | - | chr3_1:80521137-80521156 | None:intergenic | 20.0% |
| !! | AATTCAAACAGAAGATTATT+AGG | + | chr3_1:80521290-80521309 | Msa0379400:intron | 20.0% |
| !! | CAATAACATAAAAAAATCAG+GGG | - | chr3_1:80521391-80521410 | None:intergenic | 20.0% |
| !! | CCAATAACATAAAAAAATCA+GGG | - | chr3_1:80521392-80521411 | None:intergenic | 20.0% |
| !! | ACCAATAACATAAAAAAATC+AGG | - | chr3_1:80521393-80521412 | None:intergenic | 20.0% |
| !! | AAAAAGAAAAAAGTTAGTGA+AGG | - | chr3_1:80521762-80521781 | None:intergenic | 20.0% |
| !! | AATTCCATAGATAAACAATT+AGG | + | chr3_1:80521996-80522015 | Msa0379400:intron | 20.0% |
| !! | ATTCCATAGATAAACAATTA+GGG | + | chr3_1:80521997-80522016 | Msa0379400:intron | 20.0% |
| !!! | ATTTTTTATAAACACGAGTA+AGG | + | chr3_1:80522215-80522234 | Msa0379400:intron | 20.0% |
| !!! | TTGTTTTAAAAAATTAGCGA+AGG | + | chr3_1:80522302-80522321 | Msa0379400:intron | 20.0% |
| !!! | TGTTTTAAAAAATTAGCGAA+GGG | + | chr3_1:80522303-80522322 | Msa0379400:intron | 20.0% |
| !! | GCAACAAAAAAATTGAATAT+TGG | + | chr3_1:80522792-80522811 | Msa0379400:intron | 20.0% |
| !! | TAACACATGTAAATTATGAA+AGG | + | chr3_1:80523086-80523105 | Msa0379400:intron | 20.0% |
| !! | TATATAAGGAAATTTGGATA+AGG | + | chr3_1:80523225-80523244 | Msa0379400:intron | 20.0% |
| !!! | GTTGGAAATTTTTATTTTTG+AGG | + | chr3_1:80523276-80523295 | Msa0379400:intron | 20.0% |
| !! | TCTATAATAAAGATTGTTGT+TGG | - | chr3_1:80523581-80523600 | None:intergenic | 20.0% |
| !!! | TAGAAAGAGATTTTTGAATT+GGG | - | chr3_1:80524117-80524136 | None:intergenic | 20.0% |
| !!! | TTTTTGATTATAATAGTGAC+CGG | + | chr3_1:80524766-80524785 | Msa0379400:intron | 20.0% |
| !!! | TCTAATCCTTCTTTGATTTT+AGG | + | chr3_1:80519908-80519927 | Msa0379400:CDS | 25.0% |
| ! | CTTCTTCTTAGCAATTAATA+TGG | + | chr3_1:80519931-80519950 | Msa0379400:CDS | 25.0% |
| ! | GTGAAAAATAAAGCAACAAT+TGG | - | chr3_1:80520591-80520610 | None:intergenic | 25.0% |
| !!! | CTTTATTTTTCACTGTTTCA+TGG | + | chr3_1:80520598-80520617 | Msa0379400:CDS | 25.0% |
| ! | GATCTTGATCAGTTATATAT+TGG | + | chr3_1:80520620-80520639 | Msa0379400:intron | 25.0% |
| !! | TTTTGTGCTTGAATGATTAT+TGG | + | chr3_1:80520821-80520840 | Msa0379400:intron | 25.0% |
| !!! | GGGTCAATTCAATTTTTTTT+AGG | + | chr3_1:80521059-80521078 | Msa0379400:intron | 25.0% |
| !!! | AATTTTTTTTAGGTGGTAGT+GGG | + | chr3_1:80521069-80521088 | Msa0379400:intron | 25.0% |
| ! | TGTTGAAAACGTATAGATAA+AGG | - | chr3_1:80521192-80521211 | None:intergenic | 25.0% |
| ! | GTTGAAAATTCAAATGAGTT+TGG | - | chr3_1:80521226-80521245 | None:intergenic | 25.0% |
| !! | ACTCATTTGAATTTTCAACA+TGG | + | chr3_1:80521227-80521246 | Msa0379400:intron | 25.0% |
| !!! | CCCTGATTTTTTTATGTTAT+TGG | + | chr3_1:80521389-80521408 | Msa0379400:intron | 25.0% |
| ! | CCAAATTATCATTGGAAAAA+CGG | - | chr3_1:80521521-80521540 | None:intergenic | 25.0% |
| !! | TTTTCCAATGATAATTTGGT+AGG | + | chr3_1:80521522-80521541 | Msa0379400:intron | 25.0% |
| ! | TTTCCAATGATAATTTGGTA+GGG | + | chr3_1:80521523-80521542 | Msa0379400:intron | 25.0% |
| ! | CTAAAGAATCAATTCCTATA+TGG | - | chr3_1:80521710-80521729 | None:intergenic | 25.0% |
| !! | CATATAGGAATTGATTCTTT+AGG | + | chr3_1:80521708-80521727 | Msa0379400:intron | 25.0% |
| !!! | TCGTTTTAAACATGCAAATA+TGG | + | chr3_1:80521814-80521833 | Msa0379400:intron | 25.0% |
| ! | TAAACCATTATCATGCAATT+AGG | + | chr3_1:80521875-80521894 | Msa0379400:intron | 25.0% |
| ! | AAATAAACAAACTGCCTAAT+CGG | + | chr3_1:80522750-80522769 | Msa0379400:intron | 25.0% |
| ! | CAATAAAAAGAGTAGAAAGA+CGG | - | chr3_1:80523063-80523082 | None:intergenic | 25.0% |
| ! | AATATGAAAGTCACAAATAG+GGG | - | chr3_1:80523183-80523202 | None:intergenic | 25.0% |
| ! | CAATATGAAAGTCACAAATA+GGG | - | chr3_1:80523184-80523203 | None:intergenic | 25.0% |
| ! | ACAATATGAAAGTCACAAAT+AGG | - | chr3_1:80523185-80523204 | None:intergenic | 25.0% |
| ! | TATTATTACTAGCGAAAAGA+TGG | + | chr3_1:80523333-80523352 | Msa0379400:intron | 25.0% |
| ! | ATTATTACTAGCGAAAAGAT+GGG | + | chr3_1:80523334-80523353 | Msa0379400:intron | 25.0% |
| ! | CATTTGTGAAATAAAAAGAG+CGG | - | chr3_1:80523379-80523398 | None:intergenic | 25.0% |
| ! | ATAGATAATCATGGTTAGAT+TGG | - | chr3_1:80523498-80523517 | None:intergenic | 25.0% |
| ! | GTCATTGAAATAGATAATCA+TGG | - | chr3_1:80523507-80523526 | None:intergenic | 25.0% |
| !!! | TTAAAAATTGAGGGCATTTT+TGG | + | chr3_1:80523804-80523823 | Msa0379400:intron | 25.0% |
| !!! | TAACTCCTTTTAGCTTTTTT+GGG | - | chr3_1:80523844-80523863 | None:intergenic | 25.0% |
| !!! | ATAACTCCTTTTAGCTTTTT+TGG | - | chr3_1:80523845-80523864 | None:intergenic | 25.0% |
| !! | AGAAAGAGATTTTTGAATTG+GGG | - | chr3_1:80524116-80524135 | None:intergenic | 25.0% |
| !! | GTAGAAAGAGATTTTTGAAT+TGG | - | chr3_1:80524118-80524137 | None:intergenic | 25.0% |
| !!! | TAAGCAAAAGTTGACTTTTT+AGG | + | chr3_1:80524668-80524687 | Msa0379400:intron | 25.0% |
| AAGAAGCCTAAAATCAAAGA+AGG | - | chr3_1:80519917-80519936 | None:intergenic | 30.0% | |
| !! | TTGGTTCTGATTATAACACA+TGG | + | chr3_1:80520008-80520027 | Msa0379400:CDS | 30.0% |
| !! | TGGTTCTGATTATAACACAT+GGG | + | chr3_1:80520009-80520028 | Msa0379400:CDS | 30.0% |
| GAAACTTTCTGTTAAGGTTA+AGG | + | chr3_1:80520413-80520432 | Msa0379400:intron | 30.0% | |
| ! | TAATTTTCCGAGATATAGTC+AGG | + | chr3_1:80520650-80520669 | Msa0379400:intron | 30.0% |
| GTTTGATCTATCCAGATTTA+TGG | + | chr3_1:80520738-80520757 | Msa0379400:intron | 30.0% | |
| !!! | TTTTTTTGGGTTGTGTTAAC+CGG | + | chr3_1:80520858-80520877 | Msa0379400:intron | 30.0% |
| ! | CTGGTTAAGGTATCTAAAAA+AGG | + | chr3_1:80520894-80520913 | Msa0379400:intron | 30.0% |
| !!! | CAATTTTTTTTAGGTGGTAG+TGG | + | chr3_1:80521068-80521087 | Msa0379400:intron | 30.0% |
| AAAAAAATCAGGGGCAAAAA+CGG | - | chr3_1:80521382-80521401 | None:intergenic | 30.0% | |
| ACTAGAATGTACAATCAGTA+AGG | - | chr3_1:80521478-80521497 | None:intergenic | 30.0% | |
| !! | CCGTTTTTCCAATGATAATT+TGG | + | chr3_1:80521518-80521537 | Msa0379400:intron | 30.0% |
| TTTCCCTACCAAATTATCAT+TGG | - | chr3_1:80521529-80521548 | None:intergenic | 30.0% | |
| AATCAATTCCTATATGGACA+TGG | - | chr3_1:80521704-80521723 | None:intergenic | 30.0% | |
| ! | TCTCGATGGAAATTTTACAT+TGG | - | chr3_1:80521922-80521941 | None:intergenic | 30.0% |
| ! | TTTTCGTACCTATATTCGTA+AGG | - | chr3_1:80521962-80521981 | None:intergenic | 30.0% |
| CATCCCTAATTGTTTATCTA+TGG | - | chr3_1:80522003-80522022 | None:intergenic | 30.0% | |
| CATAGATAAACAATTAGGGA+TGG | + | chr3_1:80522001-80522020 | Msa0379400:intron | 30.0% | |
| ATACTCATACCCAACAATTT+GGG | - | chr3_1:80522037-80522056 | None:intergenic | 30.0% | |
| AATACTCATACCCAACAATT+TGG | - | chr3_1:80522038-80522057 | None:intergenic | 30.0% | |
| !! | ACTATAATGGGTTGTCTAAA+GGG | + | chr3_1:80522246-80522265 | Msa0379400:intron | 30.0% |
| ACAAAGCCTTAATCTATTGT+AGG | - | chr3_1:80522286-80522305 | None:intergenic | 30.0% | |
| TTAGGGATTGAGAGTAAATT+TGG | + | chr3_1:80522525-80522544 | Msa0379400:intron | 30.0% | |
| !!! | TTTTTTAGAGAGAACCGATT+AGG | - | chr3_1:80522731-80522750 | None:intergenic | 30.0% |
| TTGTACGTTATGACTTATGA+TGG | - | chr3_1:80522865-80522884 | None:intergenic | 30.0% | |
| TAAGTCATAACGTACAATCT+TGG | + | chr3_1:80522868-80522887 | Msa0379400:intron | 30.0% | |
| GTACAATCTTGGACTATTAT+AGG | + | chr3_1:80522879-80522898 | Msa0379400:intron | 30.0% | |
| TTGGAAACCAATAATTCATC+CGG | + | chr3_1:80522947-80522966 | Msa0379400:intron | 30.0% | |
| ATATAGATGTAAATTGTGGC+CGG | - | chr3_1:80522969-80522988 | None:intergenic | 30.0% | |
| TGTGAACAAAAAGAGTTTGT+TGG | + | chr3_1:80523258-80523277 | Msa0379400:intron | 30.0% | |
| AAATAAAAAGAGCGGAAGTA+CGG | - | chr3_1:80523371-80523390 | None:intergenic | 30.0% | |
| TATGTAATTGCAAGCAAGAA+GGG | - | chr3_1:80524167-80524186 | None:intergenic | 30.0% | |
| TTATGTAATTGCAAGCAAGA+AGG | - | chr3_1:80524168-80524187 | None:intergenic | 30.0% | |
| ! | AGGATGTTGTTTGAGATAAT+TGG | - | chr3_1:80524197-80524216 | None:intergenic | 30.0% |
| !! | AGAGAAAGCCATTTTAATCA+AGG | - | chr3_1:80524228-80524247 | None:intergenic | 30.0% |
| !! | CATCTTTTTAGCAATCACTA+TGG | + | chr3_1:80524266-80524285 | Msa0379400:intron | 30.0% |
| !!! | ATGTGTTCCTGCTTTTTTTA+GGG | - | chr3_1:80524620-80524639 | None:intergenic | 30.0% |
| !!! | AATGTGTTCCTGCTTTTTTT+AGG | - | chr3_1:80524621-80524640 | None:intergenic | 30.0% |
| ! | CTTTTGCTTATAATAGTGAC+CGG | - | chr3_1:80524658-80524677 | None:intergenic | 30.0% |
| TGATGTATGTGGTCTATATA+TGG | - | chr3_1:80524720-80524739 | None:intergenic | 30.0% | |
| CATTCAATGAATGATGTATG+TGG | - | chr3_1:80524731-80524750 | None:intergenic | 30.0% | |
| AACAATTGGTGAGATATTAG+TGG | - | chr3_1:80524972-80524991 | None:intergenic | 30.0% | |
| GTGAAAAAGAAAGCAACAAT+TGG | - | chr3_1:80524986-80525005 | None:intergenic | 30.0% | |
| ACTATGACAGTGTTCAACTA+TGG | + | chr3_1:80520228-80520247 | Msa0379400:intron | 35.0% | |
| GACTATAAATCATGCACAAC+TGG | + | chr3_1:80520285-80520304 | Msa0379400:CDS | 35.0% | |
| TCAATTAGTACAGACAGTAG+TGG | + | chr3_1:80520312-80520331 | Msa0379400:CDS | 35.0% | |
| TGGCATGAAACTTTCTGTTA+AGG | + | chr3_1:80520407-80520426 | Msa0379400:intron | 35.0% | |
| TGAAAAGGGAAAAGAAACCA+TGG | - | chr3_1:80520691-80520710 | None:intergenic | 35.0% | |
| TTGACAACCTATCACAATGA+AGG | + | chr3_1:80521094-80521113 | Msa0379400:intron | 35.0% | |
| GTCATTTCCTTCATTGTGAT+AGG | - | chr3_1:80521104-80521123 | None:intergenic | 35.0% | |
| TCACAATGAAGGAAATGACA+TGG | + | chr3_1:80521105-80521124 | Msa0379400:intron | 35.0% | |
| TTCATCATCACTGTGTTAGT+TGG | - | chr3_1:80521338-80521357 | None:intergenic | 35.0% | |
| CAAAAACGGATATCATGCTA+AGG | - | chr3_1:80521368-80521387 | None:intergenic | 35.0% | |
| !! | TAAGAGCTTTAGATGAAAGC+TGG | - | chr3_1:80521420-80521439 | None:intergenic | 35.0% |
| ! | AGCTTTCATCTAAAGCTCTT+AGG | + | chr3_1:80521419-80521438 | Msa0379400:intron | 35.0% |
| ATTTGTACTTGCACAACTAG+TGG | - | chr3_1:80521578-80521597 | None:intergenic | 35.0% | |
| AAGATTCACCATGTCCATAT+AGG | + | chr3_1:80521693-80521712 | Msa0379400:intron | 35.0% | |
| ! | TGGAAATTTTACATTGGACG+TGG | - | chr3_1:80521916-80521935 | None:intergenic | 35.0% |
| GTACTCTTCCTTACGAATAT+AGG | + | chr3_1:80521951-80521970 | Msa0379400:intron | 35.0% | |
| ACGAGAAATACCCAAATTGT+TGG | + | chr3_1:80522024-80522043 | Msa0379400:intron | 35.0% | |
| CGAGAAATACCCAAATTGTT+GGG | + | chr3_1:80522025-80522044 | Msa0379400:intron | 35.0% | |
| ! | TTGGGTATGAGTATTAGCTT+GGG | + | chr3_1:80522043-80522062 | Msa0379400:intron | 35.0% |
| ACGGGTAATGAACATAAGTA+CGG | + | chr3_1:80522123-80522142 | Msa0379400:intron | 35.0% | |
| AGCTTGTCATCATACCTTAT+AGG | - | chr3_1:80522160-80522179 | None:intergenic | 35.0% | |
| !! | CACTATAATGGGTTGTCTAA+AGG | + | chr3_1:80522245-80522264 | Msa0379400:intron | 35.0% |
| TCTATTGTAGGTGTGACAAT+TGG | - | chr3_1:80522274-80522293 | None:intergenic | 35.0% | |
| GTCACACCTACAATAGATTA+AGG | + | chr3_1:80522277-80522296 | Msa0379400:intron | 35.0% | |
| TCCTTGCTAAACAAAGCTTA+GGG | + | chr3_1:80522508-80522527 | Msa0379400:intron | 35.0% | |
| TCACTTTACAACTGCCTAAT+CGG | + | chr3_1:80522714-80522733 | Msa0379400:intron | 35.0% | |
| ! | TGCCTAATCGGTTCAATATT+GGG | + | chr3_1:80522762-80522781 | Msa0379400:intron | 35.0% |
| ATTGAATATTGGGCAAGCAA+AGG | + | chr3_1:80522803-80522822 | Msa0379400:intron | 35.0% | |
| TGCTAATGAAGAAGAGTGAA+AGG | - | chr3_1:80522840-80522859 | None:intergenic | 35.0% | |
| ATAGGTGAATTCCTATTGCA+AGG | + | chr3_1:80522897-80522916 | Msa0379400:intron | 35.0% | |
| GATTGACAAAACCTTGCAAT+AGG | - | chr3_1:80522911-80522930 | None:intergenic | 35.0% | |
| ATGTAATTGCAAGCAAGAAG+GGG | - | chr3_1:80524166-80524185 | None:intergenic | 35.0% | |
| ! | TTTTAATCAAGGAAGCTACG+AGG | - | chr3_1:80524217-80524236 | None:intergenic | 35.0% |
| CGTAGCTTCCTTGATTAAAA+TGG | + | chr3_1:80524217-80524236 | Msa0379400:intron | 35.0% | |
| TAAACCATCTCCAACAATGT+GGG | - | chr3_1:80524313-80524332 | None:intergenic | 35.0% | |
| TCAATTAATACAGACAGCAG+TGG | + | chr3_1:80524580-80524599 | Msa0379400:intron | 35.0% | |
| !!! | TTTTTTTAGGGGAATGGTTG+TGG | - | chr3_1:80524608-80524627 | None:intergenic | 35.0% |
| !!! | TGTGTTCCTGCTTTTTTTAG+GGG | - | chr3_1:80524619-80524638 | None:intergenic | 35.0% |
| TTGATTATAATAGTGACCGG+AGG | + | chr3_1:80524769-80524788 | Msa0379400:intron | 35.0% | |
| TGATTATAATAGTGACCGGA+GGG | + | chr3_1:80524770-80524789 | Msa0379400:intron | 35.0% | |
| ATTCCTAGACATTGCACATT+TGG | + | chr3_1:80524803-80524822 | Msa0379400:intron | 35.0% | |
| GATCTCTATCCGTCATATAT+TGG | + | chr3_1:80525015-80525034 | Msa0379400:CDS | 35.0% | |
| CCAACCTGATTTATCTCCAA+CGG | - | chr3_1:80519984-80520003 | None:intergenic | 40.0% | |
| CGTTGGAGATAAATCAGGTT+GGG | + | chr3_1:80519982-80520001 | Msa0379400:CDS | 40.0% | |
| !! | GATAAATCAGGTTGGGCAAT+TGG | + | chr3_1:80519989-80520008 | Msa0379400:CDS | 40.0% |
| GGCTAGTGACAAAACATTTG+CGG | + | chr3_1:80520030-80520049 | Msa0379400:CDS | 40.0% | |
| AGTGACAAAACATTTGCGGT+TGG | + | chr3_1:80520034-80520053 | Msa0379400:CDS | 40.0% | |
| ! | TACTTCATATGTGCTGTTCC+TGG | + | chr3_1:80520372-80520391 | Msa0379400:CDS | 40.0% |
| CTACAAGAGCTCCATAAATC+TGG | - | chr3_1:80520752-80520771 | None:intergenic | 40.0% | |
| GATTTGAGTATGTTCTCTCG+TGG | + | chr3_1:80521162-80521181 | Msa0379400:intron | 40.0% | |
| ACTGTGTTAGTTGGATACAG+TGG | - | chr3_1:80521329-80521348 | None:intergenic | 40.0% | |
| GGATTTCATTGCGTAGTTCT+CGG | - | chr3_1:80521741-80521760 | None:intergenic | 40.0% | |
| ATGCAAATATGGAACGCGTT+AGG | + | chr3_1:80521825-80521844 | Msa0379400:intron | 40.0% | |
| TGCAATTAGGCGCCATATTA+TGG | + | chr3_1:80521888-80521907 | Msa0379400:intron | 40.0% | |
| GCAATTAGGCGCCATATTAT+GGG | + | chr3_1:80521889-80521908 | Msa0379400:intron | 40.0% | |
| CAATTAGGCGCCATATTATG+GGG | + | chr3_1:80521890-80521909 | Msa0379400:intron | 40.0% | |
| GTTGGGTATGAGTATTAGCT+TGG | + | chr3_1:80522042-80522061 | Msa0379400:intron | 40.0% | |
| ! | AGGGGCGTGTTATTAAAGTA+CGG | + | chr3_1:80522104-80522123 | Msa0379400:intron | 40.0% |
| CGGGTAATGAACATAAGTAC+GGG | + | chr3_1:80522124-80522143 | Msa0379400:intron | 40.0% | |
| TAAGGCGATGTGCACTATAA+TGG | + | chr3_1:80522233-80522252 | Msa0379400:intron | 40.0% | |
| AAGGCGATGTGCACTATAAT+GGG | + | chr3_1:80522234-80522253 | Msa0379400:intron | 40.0% | |
| GTGTATAAGCAAGCTGACAA+CGG | + | chr3_1:80522325-80522344 | Msa0379400:intron | 40.0% | |
| GTCCTTGCTAAACAAAGCTT+AGG | + | chr3_1:80522507-80522526 | Msa0379400:intron | 40.0% | |
| !! | TCCCTAAGCTTTGTTTAGCA+AGG | - | chr3_1:80522512-80522531 | None:intergenic | 40.0% |
| ! | CTGCCTAATCGGTTCAATAT+TGG | + | chr3_1:80522761-80522780 | Msa0379400:intron | 40.0% |
| GACCCAATATTGAACCGATT+AGG | - | chr3_1:80522767-80522786 | None:intergenic | 40.0% | |
| ATTGTGGCCGGATGAATTAT+TGG | - | chr3_1:80522957-80522976 | None:intergenic | 40.0% | |
| CAAAAAGACAGACATTCACG+TGG | + | chr3_1:80523025-80523044 | Msa0379400:intron | 40.0% | |
| GTCAGCCCAAAAAAGCTAAA+AGG | + | chr3_1:80523836-80523855 | Msa0379400:intron | 40.0% | |
| ! | TTGGGGAAATCTAAAGTGAG+AGG | - | chr3_1:80524099-80524118 | None:intergenic | 40.0% |
| ! | ATGGCTTTCTCTAACGCTTT+TGG | + | chr3_1:80524236-80524255 | Msa0379400:intron | 40.0% |
| CTAAACCATCTCCAACAATG+TGG | - | chr3_1:80524314-80524333 | None:intergenic | 40.0% | |
| CACATTGTTGGAGATGGTTT+AGG | + | chr3_1:80524312-80524331 | Msa0379400:CDS | 40.0% | |
| TTGTTGGAGATGGTTTAGGT+TGG | + | chr3_1:80524316-80524335 | Msa0379400:CDS | 40.0% | |
| !! | GATGGTTTAGGTTGGACAAT+TGG | + | chr3_1:80524324-80524343 | Msa0379400:CDS | 40.0% |
| TTGGTCCTGATTACACTACA+TGG | + | chr3_1:80524343-80524362 | Msa0379400:CDS | 40.0% | |
| TGGTCCTGATTACACTACAT+GGG | + | chr3_1:80524344-80524363 | Msa0379400:CDS | 40.0% | |
| ! | TGATTACACTACATGGGCTA+GGG | + | chr3_1:80524350-80524369 | Msa0379400:CDS | 40.0% |
| ACAGTGTTCAACTATGTAGC+TGG | + | chr3_1:80524502-80524521 | Msa0379400:intron | 40.0% | |
| CAGTGTTCAACTATGTAGCT+GGG | + | chr3_1:80524503-80524522 | Msa0379400:intron | 40.0% | |
| GACTATACATTATGCACAGC+TGG | + | chr3_1:80524553-80524572 | Msa0379400:intron | 40.0% | |
| ACCATTCCCCTAAAAAAAGC+AGG | + | chr3_1:80524610-80524629 | Msa0379400:intron | 40.0% | |
| !!! | TCCTGCTTTTTTTAGGGGAA+TGG | - | chr3_1:80524614-80524633 | None:intergenic | 40.0% |
| ACATTACTTCATACTCCCTC+CGG | + | chr3_1:80524636-80524655 | Msa0379400:intron | 40.0% | |
| TGCTTATAATAGTGACCGGA+GGG | - | chr3_1:80524654-80524673 | None:intergenic | 40.0% | |
| TTGCTTATAATAGTGACCGG+AGG | - | chr3_1:80524655-80524674 | None:intergenic | 40.0% | |
| ATGCCAAATGTGCAATGTCT+AGG | - | chr3_1:80524809-80524828 | None:intergenic | 40.0% | |
| TGGCATGAAACTCTCTCTTA+AGG | + | chr3_1:80524823-80524842 | Msa0379400:intron | 40.0% | |
| !! | CTTTCTTTTTCACTGCTTCC+TGG | + | chr3_1:80524993-80525012 | Msa0379400:CDS | 40.0% |
| !! | TATATGACGGATAGAGATCC+AGG | - | chr3_1:80525014-80525033 | None:intergenic | 40.0% |
| CTGATTTATCTCCAACGGTG+TGG | - | chr3_1:80519979-80519998 | None:intergenic | 45.0% | |
| CACACCGTTGGAGATAAATC+AGG | + | chr3_1:80519977-80519996 | Msa0379400:CDS | 45.0% | |
| CCGTTGGAGATAAATCAGGT+TGG | + | chr3_1:80519981-80520000 | Msa0379400:CDS | 45.0% | |
| ACAGTGTTCAACTATGGTGC+TGG | + | chr3_1:80520234-80520253 | Msa0379400:intron | 45.0% | |
| TTTCTTGAGAGGGATGGTTG+TGG | - | chr3_1:80520340-80520359 | None:intergenic | 45.0% | |
| GTGTTCCTGCTTTCTTGAGA+GGG | - | chr3_1:80520350-80520369 | None:intergenic | 45.0% | |
| TGTGTTCCTGCTTTCTTGAG+AGG | - | chr3_1:80520351-80520370 | None:intergenic | 45.0% | |
| GAAGATGCACTTTGTGTGGA+AGG | - | chr3_1:80520552-80520571 | None:intergenic | 45.0% | |
| AGCTGAAGATGCACTTTGTG+TGG | - | chr3_1:80520556-80520575 | None:intergenic | 45.0% | |
| CCTCTGTCCTGACTATATCT+CGG | - | chr3_1:80520660-80520679 | None:intergenic | 45.0% | |
| ATATGGAACGCGTTAGGAGT+AGG | + | chr3_1:80521831-80521850 | Msa0379400:intron | 45.0% | |
| GGCGCCTAATTGCATGATAA+TGG | - | chr3_1:80521882-80521901 | None:intergenic | 45.0% | |
| ! | AGTACGTGTTGATGTCTCGA+TGG | - | chr3_1:80521936-80521955 | None:intergenic | 45.0% |
| CCATACTCGTACAAACTTGC+GGG | - | chr3_1:80522076-80522095 | None:intergenic | 45.0% | |
| CCCATACTCGTACAAACTTG+CGG | - | chr3_1:80522077-80522096 | None:intergenic | 45.0% | |
| CCGCAAGTTTGTACGAGTAT+GGG | + | chr3_1:80522074-80522093 | Msa0379400:intron | 45.0% | |
| ! | GGGGCGTGTTATTAAAGTAC+GGG | + | chr3_1:80522105-80522124 | Msa0379400:intron | 45.0% |
| AAGATATACGCTCGGGTATG+TGG | + | chr3_1:80522191-80522210 | Msa0379400:intron | 45.0% | |
| TTGGGCAAGCAAAGGACATA+TGG | + | chr3_1:80522811-80522830 | Msa0379400:intron | 45.0% | |
| TGGGCAAGCAAAGGACATAT+GGG | + | chr3_1:80522812-80522831 | Msa0379400:intron | 45.0% | |
| TTGCAAGCAAGAAGGGGATT+GGG | - | chr3_1:80524160-80524179 | None:intergenic | 45.0% | |
| ATTGCAAGCAAGAAGGGGAT+TGG | - | chr3_1:80524161-80524180 | None:intergenic | 45.0% | |
| ! | ATGTGGGTTGTTGCCATAGT+CGG | - | chr3_1:80524297-80524316 | None:intergenic | 45.0% |
| ATGGCAACAACCCACATTGT+TGG | + | chr3_1:80524300-80524319 | Msa0379400:CDS | 45.0% | |
| ACAACCCACATTGTTGGAGA+TGG | + | chr3_1:80524306-80524325 | Msa0379400:CDS | 45.0% | |
| CTAGCCCATGTAGTGTAATC+AGG | - | chr3_1:80524351-80524370 | None:intergenic | 45.0% | |
| CTGATTACACTACATGGGCT+AGG | + | chr3_1:80524349-80524368 | Msa0379400:CDS | 45.0% | |
| AGGGACAAAACCTTTGCAGT+TGG | + | chr3_1:80524369-80524388 | Msa0379400:CDS | 45.0% | |
| ACTTTGTGTGGTAGGAGTAG+TGG | - | chr3_1:80524939-80524958 | None:intergenic | 45.0% | |
| GAAGATGCACTTTGTGTGGT+AGG | - | chr3_1:80524947-80524966 | None:intergenic | 45.0% | |
| GGTTGAAGATGCACTTTGTG+TGG | - | chr3_1:80524951-80524970 | None:intergenic | 45.0% | |
| !! | CTTAAAAAAAAATATATATA+AGG | + | chr3_1:80523211-80523230 | Msa0379400:intron | 5.0% |
| GTGTGGACAGTTGCAAGAGT+TGG | - | chr3_1:80519962-80519981 | None:intergenic | 50.0% | |
| !! | TTTGCGGTTGGTGACAGTCT+TGG | + | chr3_1:80520046-80520065 | Msa0379400:CDS | 50.0% |
| ACCATCCCTCTCAAGAAAGC+AGG | + | chr3_1:80520342-80520361 | Msa0379400:CDS | 50.0% | |
| TCCTGCTTTCTTGAGAGGGA+TGG | - | chr3_1:80520346-80520365 | None:intergenic | 50.0% | |
| !! | GATGGTGATGGTGTTGCAGA+AGG | - | chr3_1:80520462-80520481 | None:intergenic | 50.0% |
| TCTGCAACACCATCACCATC+AGG | + | chr3_1:80520462-80520481 | Msa0379400:CDS | 50.0% | |
| CTGCAACACCATCACCATCA+GGG | + | chr3_1:80520463-80520482 | Msa0379400:CDS | 50.0% | |
| ACACCATCACCATCAGGGAA+AGG | + | chr3_1:80520468-80520487 | Msa0379400:CDS | 50.0% | |
| ! | GAACCTTTCCCTGATGGTGA+TGG | - | chr3_1:80520474-80520493 | None:intergenic | 50.0% |
| GAAGGTGAACCTTTCCCTGA+TGG | - | chr3_1:80520480-80520499 | None:intergenic | 50.0% | |
| ACTTTGTGTGGAAGGAGTGG+TGG | - | chr3_1:80520544-80520563 | None:intergenic | 50.0% | |
| TGCACTTTGTGTGGAAGGAG+TGG | - | chr3_1:80520547-80520566 | None:intergenic | 50.0% | |
| CCGAGATATAGTCAGGACAG+AGG | + | chr3_1:80520657-80520676 | Msa0379400:intron | 50.0% | |
| AGATACCTTAACCAGTGCCC+CGG | - | chr3_1:80520889-80520908 | None:intergenic | 50.0% | |
| AAAATGTTAACCGGTGCCCC+CGG | - | chr3_1:80521018-80521037 | None:intergenic | 50.0% | |
| TTGGACGTGGCCCCATAATA+TGG | - | chr3_1:80521903-80521922 | None:intergenic | 50.0% | |
| CCCGCAAGTTTGTACGAGTA+TGG | + | chr3_1:80522073-80522092 | Msa0379400:intron | 50.0% | |
| AGTTTGTACGAGTATGGGCG+TGG | + | chr3_1:80522079-80522098 | Msa0379400:intron | 50.0% | |
| GTTTGTACGAGTATGGGCGT+GGG | + | chr3_1:80522080-80522099 | Msa0379400:intron | 50.0% | |
| TGCCCACGAAGATATACGCT+CGG | + | chr3_1:80522183-80522202 | Msa0379400:intron | 50.0% | |
| ACCCGAGCGTATATCTTCGT+GGG | - | chr3_1:80522188-80522207 | None:intergenic | 50.0% | |
| TACCCGAGCGTATATCTTCG+TGG | - | chr3_1:80522189-80522208 | None:intergenic | 50.0% | |
| ! | CACTATGGCATTGCCGACTA+TGG | + | chr3_1:80524281-80524300 | Msa0379400:CDS | 50.0% |
| GGAATAGCACATACTCCCTC+CGG | - | chr3_1:80524788-80524807 | None:intergenic | 50.0% | |
| !! | TGATGGTGTTGCAGAAGGAG+CGG | - | chr3_1:80520457-80520476 | None:intergenic | 50.0% |
| !! | GATGGTGATGGTGTTGCAGA+AGG | - | chr3_1:80520462-80520481 | None:intergenic | 50.0% |
| ACACCATCACCATCCACGAA+AGG | + | chr3_1:80524875-80524894 | Msa0379400:intron | 50.0% | |
| GAACCTTTCGTGGATGGTGA+TGG | - | chr3_1:80524881-80524900 | None:intergenic | 50.0% | |
| GAAGGTGAACCTTTCGTGGA+TGG | - | chr3_1:80524887-80524906 | None:intergenic | 50.0% | |
| ATCGGAAGGTGAACCTTTCG+TGG | - | chr3_1:80524891-80524910 | None:intergenic | 50.0% | |
| !! | AGTAGTGGTGGTGGTTGTTG+CGG | - | chr3_1:80524924-80524943 | None:intergenic | 50.0% |
| TTGTGTGGTAGGAGTAGTGG+TGG | - | chr3_1:80524936-80524955 | None:intergenic | 50.0% | |
| CTTGCAACTGTCCACACCGT+TGG | + | chr3_1:80519965-80519984 | Msa0379400:CDS | 55.0% | |
| ! | CTATGGTGCTGGACACACAG+TGG | + | chr3_1:80520245-80520264 | Msa0379400:CDS | 55.0% |
| GCTGTTCCTGGACATTGCAC+AGG | + | chr3_1:80520384-80520403 | Msa0379400:CDS | 55.0% | |
| GTTCCTGGACATTGCACAGG+TGG | + | chr3_1:80520387-80520406 | Msa0379400:CDS | 55.0% | |
| ATGCCACCTGTGCAATGTCC+AGG | - | chr3_1:80520393-80520412 | None:intergenic | 55.0% | |
| GGGAAAGGTTCACCTTCCGA+TGG | + | chr3_1:80520483-80520502 | Msa0379400:CDS | 55.0% | |
| TTGTGTGGAAGGAGTGGTGG+TGG | - | chr3_1:80520541-80520560 | None:intergenic | 55.0% | |
| ATACCTTAACCAGTGCCCCG+GGG | - | chr3_1:80520887-80520906 | None:intergenic | 55.0% | |
| GATACCTTAACCAGTGCCCC+GGG | - | chr3_1:80520888-80520907 | None:intergenic | 55.0% | |
| TGCTTCCTTAACCAGTGCCC+CGG | + | chr3_1:80520996-80521015 | Msa0379400:intron | 55.0% | |
| AAATGTTAACCGGTGCCCCC+GGG | - | chr3_1:80521017-80521036 | None:intergenic | 55.0% | |
| TACGAGTATGGGCGTGGGTA+GGG | + | chr3_1:80522085-80522104 | Msa0379400:intron | 55.0% | |
| CGGGCGCTTAGATGCCTATA+AGG | + | chr3_1:80522143-80522162 | Msa0379400:intron | 55.0% | |
| GCCCACGAAGATATACGCTC+GGG | + | chr3_1:80522184-80522203 | Msa0379400:intron | 55.0% | |
| CTATGTAGCTGGGCACACAG+TGG | + | chr3_1:80524513-80524532 | Msa0379400:intron | 55.0% | |
| TGTGGTAGGAGTAGTGGTGG+TGG | - | chr3_1:80524933-80524952 | None:intergenic | 55.0% | |
| !! | TGTGGTGGTGGTTGCAGCTG+GGG | - | chr3_1:80520511-80520530 | None:intergenic | 60.0% |
| !! | GTGTGGTGGTGGTTGCAGCT+GGG | - | chr3_1:80520512-80520531 | None:intergenic | 60.0% |
| !! | GAAGGAGTGGTGGTGGTGGA+GGG | - | chr3_1:80520534-80520553 | None:intergenic | 60.0% |
| !! | TGTGGAAGGAGTGGTGGTGG+TGG | - | chr3_1:80520538-80520557 | None:intergenic | 60.0% |
| GGACAGAGGCAGTGCTTCCA+TGG | + | chr3_1:80520671-80520690 | Msa0379400:intron | 60.0% | |
| GTTGTGTTAACCGGTGCCCC+CGG | + | chr3_1:80520867-80520886 | Msa0379400:intron | 60.0% | |
| TTGTGTTAACCGGTGCCCCC+GGG | + | chr3_1:80520868-80520887 | Msa0379400:intron | 60.0% | |
| TACCTTAACCAGTGCCCCGG+GGG | - | chr3_1:80520886-80520905 | None:intergenic | 60.0% | |
| GCTTCCTTAACCAGTGCCCC+GGG | + | chr3_1:80520997-80521016 | Msa0379400:intron | 60.0% | |
| CTTCCTTAACCAGTGCCCCG+GGG | + | chr3_1:80520998-80521017 | Msa0379400:intron | 60.0% | |
| TTCCTTAACCAGTGCCCCGG+GGG | + | chr3_1:80520999-80521018 | Msa0379400:intron | 60.0% | |
| AATGTTAACCGGTGCCCCCG+GGG | - | chr3_1:80521016-80521035 | None:intergenic | 60.0% | |
| GTACGAGTATGGGCGTGGGT+AGG | + | chr3_1:80522084-80522103 | Msa0379400:intron | 60.0% | |
| ACGAGTATGGGCGTGGGTAG+GGG | + | chr3_1:80522086-80522105 | Msa0379400:intron | 60.0% | |
| GCAGAAGGAGCGGCAGAAGA+AGG | - | chr3_1:80524854-80524873 | None:intergenic | 60.0% | |
| ! | GGTTGCAGCTGGGGTGCCAT+CGG | - | chr3_1:80520502-80520521 | None:intergenic | 65.0% |
| !! | GGTGTGGTGGTGGTTGCAGC+TGG | - | chr3_1:80520513-80520532 | None:intergenic | 65.0% |
| !! | AGTGGTGGTGGTGGAGGGTG+TGG | - | chr3_1:80520529-80520548 | None:intergenic | 65.0% |
| !! | GGAAGGAGTGGTGGTGGTGG+AGG | - | chr3_1:80520535-80520554 | None:intergenic | 65.0% |
| TGTGTTAACCGGTGCCCCCG+GGG | + | chr3_1:80520869-80520888 | Msa0379400:intron | 65.0% | |
| TGTTGCGGCAGCGGTGCGAT+CGG | - | chr3_1:80524909-80524928 | None:intergenic | 65.0% | |
| ! | GGTGGTGGTTGTTGCGGCAG+CGG | - | chr3_1:80524918-80524937 | None:intergenic | 65.0% |
| ! | GCAGCTGGGGTGCCATCGGA+AGG | - | chr3_1:80520498-80520517 | None:intergenic | 70.0% |
| !! | GGTGGTGGAGGGTGTGGTGG+TGG | - | chr3_1:80520523-80520542 | None:intergenic | 70.0% |
| !! | GGTGGTGGTGGAGGGTGTGG+TGG | - | chr3_1:80520526-80520545 | None:intergenic | 70.0% |
| !! | TGCCCCCGGGGCACTGGTTA+AGG | + | chr3_1:80520881-80520900 | Msa0379400:intron | 70.0% |
| !! | TGCCCCCGGGGCACTGGTTA+AGG | - | chr3_1:80520881-80520900 | None:intergenic | 70.0% |
| ! | AACCAGTGCCCCGGGGGCAC+CGG | - | chr3_1:80521005-80521024 | None:intergenic | 75.0% |
| ! | AACCAGTGCCCCGGGGGCAC+CGG | + | chr3_1:80521005-80521024 | Msa0379400:intron | 75.0% |
| GCGGCAGCGGTGCGATCGGA+AGG | - | chr3_1:80524905-80524924 | None:intergenic | 75.0% | |
| ! | AACCGGTGCCCCCGGGGCAC+TGG | + | chr3_1:80520875-80520894 | Msa0379400:intron | 80.0% |
| ! | AACCGGTGCCCCCGGGGCAC+TGG | - | chr3_1:80520875-80520894 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 80519899 | 80525042 | 80519899 | ID=Msa0379400;Name=Msa0379400 |
| chr3_1 | mRNA | 80519899 | 80525042 | 80519899 | ID=Msa0379400-mRNA-1;Parent=Msa0379400;Name=Msa0379400-mRNA-1;_AED=0.15;_eAED=0.15;_QI=0|0|0|1|0.25|0.4|5|0|275 |
| chr3_1 | exon | 80519899 | 80520067 | 80519899 | ID=Msa0379400-mRNA-1:exon:20136;Parent=Msa0379400-mRNA-1 |
| chr3_1 | exon | 80520238 | 80520422 | 80520238 | ID=Msa0379400-mRNA-1:exon:20137;Parent=Msa0379400-mRNA-1 |
| chr3_1 | exon | 80520429 | 80520630 | 80520429 | ID=Msa0379400-mRNA-1:exon:20138;Parent=Msa0379400-mRNA-1 |
| chr3_1 | exon | 80524277 | 80524402 | 80524277 | ID=Msa0379400-mRNA-1:exon:20139;Parent=Msa0379400-mRNA-1 |
| chr3_1 | exon | 80524897 | 80525042 | 80524897 | ID=Msa0379400-mRNA-1:exon:20140;Parent=Msa0379400-mRNA-1 |
| chr3_1 | CDS | 80519899 | 80520067 | 80519899 | ID=Msa0379400-mRNA-1:cds;Parent=Msa0379400-mRNA-1 |
| chr3_1 | CDS | 80520238 | 80520422 | 80520238 | ID=Msa0379400-mRNA-1:cds;Parent=Msa0379400-mRNA-1 |
| chr3_1 | CDS | 80520429 | 80520630 | 80520429 | ID=Msa0379400-mRNA-1:cds;Parent=Msa0379400-mRNA-1 |
| chr3_1 | CDS | 80524277 | 80524402 | 80524277 | ID=Msa0379400-mRNA-1:cds;Parent=Msa0379400-mRNA-1 |
| chr3_1 | CDS | 80524897 | 80525042 | 80524897 | ID=Msa0379400-mRNA-1:cds;Parent=Msa0379400-mRNA-1 |
| Gene Sequence |
| Protein sequence |
