Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0379440 | XP_003602846.2 | 86.979 | 192 | 20 | 2 | 1 | 192 | 1 | 187 | 5.06e-90 | 271 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0379440 | sp|Q41001|BCP_PEA | 74.227 | 194 | 43 | 5 | 1 | 192 | 1 | 189 | 1.31e-77 | 233 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0379440 | B7FGF6 | 86.979 | 192 | 20 | 2 | 1 | 192 | 1 | 187 | 2.42e-90 | 271 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0199960 | Msa0379440 | 0.829082 | 6.281809e-55 | -8.615850e-47 |
| Msa0379400 | Msa0379440 | 0.944221 | 2.901165e-103 | -8.615850e-47 |
| Msa0379440 | Msa0475290 | 0.936559 | 1.431611e-97 | -8.615850e-47 |
| Msa0379440 | Msa0526550 | 0.823454 | 1.372903e-53 | -8.615850e-47 |
| Msa0379440 | Msa0576930 | 0.802946 | 4.407186e-49 | -8.615850e-47 |
| Msa0379440 | Msa0688820 | 0.816487 | 5.391923e-52 | -8.615850e-47 |
| Msa0379440 | Msa1037550 | 0.867748 | 1.088304e-65 | -8.615850e-47 |
| Msa0379440 | Msa1063500 | 0.806302 | 8.787874e-50 | -8.615850e-47 |
| Msa0379440 | Msa1130430 | 0.837570 | 4.808732e-57 | -8.615850e-47 |
| Msa0379440 | Msa1363340 | 0.824469 | 7.937352e-54 | -8.615850e-47 |
| Msa0379440 | Msa1386610 | 0.826304 | 2.919733e-54 | -8.615850e-47 |
| Msa0379440 | Msa1446110 | 0.832591 | 8.660931e-56 | -8.615850e-47 |
| Msa0242490 | Msa0379440 | 0.807784 | 4.268062e-50 | -8.615850e-47 |
| Msa0280690 | Msa0379440 | 0.805157 | 1.528476e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0379440 | MtrunA17_Chr3g0132441 | 86.979 | 192 | 20 | 2 | 1 | 192 | 1 | 187 | 4.66e-94 | 271 |
| Msa0379440 | MtrunA17_Chr3g0132431 | 77.604 | 192 | 35 | 3 | 1 | 192 | 1 | 184 | 1.86e-92 | 267 |
| Msa0379440 | MtrunA17_Chr3g0132511 | 61.364 | 220 | 42 | 4 | 7 | 188 | 6 | 220 | 5.18e-71 | 214 |
| Msa0379440 | MtrunA17_Chr3g0132701 | 61.927 | 218 | 42 | 4 | 7 | 188 | 6 | 218 | 1.92e-70 | 213 |
| Msa0379440 | MtrunA17_Chr3g0132411 | 67.717 | 127 | 41 | 0 | 1 | 127 | 39 | 165 | 4.74e-57 | 177 |
| Msa0379440 | MtrunA17_Chr8g0335531 | 47.027 | 185 | 88 | 6 | 7 | 186 | 4 | 183 | 8.94e-41 | 136 |
| Msa0379440 | MtrunA17_Chr8g0335571 | 56.098 | 123 | 50 | 3 | 5 | 124 | 2 | 123 | 6.11e-40 | 134 |
| Msa0379440 | MtrunA17_Chr1g0196801 | 35.928 | 167 | 100 | 2 | 24 | 190 | 20 | 179 | 2.01e-32 | 115 |
| Msa0379440 | MtrunA17_Chr5g0394321 | 42.282 | 149 | 75 | 7 | 13 | 156 | 10 | 152 | 2.98e-29 | 107 |
| Msa0379440 | MtrunA17_Chr2g0323021 | 40.816 | 147 | 79 | 4 | 13 | 153 | 12 | 156 | 2.94e-28 | 105 |
| Msa0379440 | MtrunA17_Chr4g0064041 | 50.833 | 120 | 51 | 4 | 25 | 138 | 27 | 144 | 4.64e-28 | 108 |
| Msa0379440 | MtrunA17_Chr4g0064041 | 50.000 | 100 | 45 | 2 | 27 | 121 | 191 | 290 | 1.41e-25 | 101 |
| Msa0379440 | MtrunA17_Chr6g0481491 | 48.000 | 100 | 52 | 0 | 27 | 126 | 28 | 127 | 9.68e-28 | 103 |
| Msa0379440 | MtrunA17_Chr1g0211101 | 34.694 | 147 | 85 | 4 | 3 | 138 | 7 | 153 | 9.53e-26 | 97.8 |
| Msa0379440 | MtrunA17_Chr2g0306461 | 39.516 | 124 | 72 | 1 | 3 | 123 | 4 | 127 | 2.25e-25 | 97.4 |
| Msa0379440 | MtrunA17_Chr1g0205701 | 31.250 | 192 | 122 | 7 | 1 | 189 | 1 | 185 | 1.67e-24 | 94.7 |
| Msa0379440 | MtrunA17_Chr6g0459441 | 44.118 | 102 | 56 | 1 | 21 | 121 | 20 | 121 | 9.84e-24 | 92.4 |
| Msa0379440 | MtrunA17_Chr4g0033131 | 39.552 | 134 | 74 | 4 | 3 | 129 | 4 | 137 | 1.99e-23 | 91.7 |
| Msa0379440 | MtrunA17_Chr4g0033531 | 39.552 | 134 | 74 | 4 | 3 | 129 | 4 | 137 | 1.99e-23 | 91.7 |
| Msa0379440 | MtrunA17_Chr7g0253701 | 41.860 | 129 | 66 | 4 | 1 | 124 | 1 | 125 | 3.64e-23 | 90.5 |
| Msa0379440 | MtrunA17_Chr7g0253671 | 41.860 | 129 | 66 | 4 | 1 | 124 | 1 | 125 | 3.64e-23 | 90.5 |
| Msa0379440 | MtrunA17_Chr7g0253681 | 38.889 | 126 | 75 | 2 | 1 | 124 | 1 | 126 | 4.83e-22 | 87.8 |
| Msa0379440 | MtrunA17_Chr1g0177341 | 39.474 | 114 | 64 | 3 | 13 | 121 | 8 | 121 | 1.34e-21 | 86.3 |
| Msa0379440 | MtrunA17_Chr1g0177331 | 39.474 | 114 | 64 | 3 | 13 | 121 | 8 | 121 | 1.34e-21 | 86.3 |
| Msa0379440 | MtrunA17_Chr8g0387804 | 41.748 | 103 | 56 | 2 | 24 | 122 | 26 | 128 | 3.98e-21 | 84.3 |
| Msa0379440 | MtrunA17_Chr7g0253731 | 36.434 | 129 | 72 | 4 | 1 | 124 | 1 | 124 | 6.84e-20 | 82.0 |
| Msa0379440 | MtrunA17_Chr7g0253631 | 38.400 | 125 | 71 | 3 | 1 | 122 | 1 | 122 | 7.29e-20 | 84.0 |
| Msa0379440 | MtrunA17_Chr6g0483981 | 35.326 | 184 | 109 | 7 | 1 | 174 | 1 | 184 | 8.68e-20 | 86.3 |
| Msa0379440 | MtrunA17_Chr2g0289741 | 36.029 | 136 | 83 | 3 | 16 | 147 | 16 | 151 | 2.27e-19 | 80.9 |
| Msa0379440 | MtrunA17_Chr7g0253641 | 38.525 | 122 | 73 | 2 | 1 | 121 | 1 | 121 | 2.57e-19 | 82.0 |
| Msa0379440 | MtrunA17_Chr4g0041811 | 39.316 | 117 | 66 | 2 | 10 | 121 | 15 | 131 | 4.22e-19 | 81.6 |
| Msa0379440 | MtrunA17_Chr2g0301431 | 43.000 | 100 | 53 | 3 | 22 | 120 | 27 | 123 | 8.62e-19 | 78.2 |
| Msa0379440 | MtrunA17_Chr8g0360371 | 35.075 | 134 | 79 | 4 | 12 | 141 | 8 | 137 | 1.79e-18 | 81.3 |
| Msa0379440 | MtrunA17_Chr7g0253761 | 36.585 | 123 | 76 | 2 | 1 | 122 | 1 | 122 | 2.64e-18 | 78.2 |
| Msa0379440 | MtrunA17_Chr2g0319611 | 42.157 | 102 | 52 | 2 | 29 | 123 | 28 | 129 | 3.66e-18 | 79.7 |
| Msa0379440 | MtrunA17_Chr4g0039721 | 28.485 | 165 | 108 | 3 | 2 | 160 | 7 | 167 | 2.01e-17 | 76.3 |
| Msa0379440 | MtrunA17_Chr3g0125791 | 43.299 | 97 | 51 | 3 | 24 | 119 | 30 | 123 | 3.05e-17 | 74.3 |
| Msa0379440 | MtrunA17_Chr6g0453921 | 36.842 | 133 | 74 | 6 | 8 | 136 | 20 | 146 | 4.28e-17 | 75.1 |
| Msa0379440 | MtrunA17_Chr2g0331181 | 34.641 | 153 | 88 | 4 | 7 | 149 | 3 | 153 | 4.42e-17 | 75.5 |
| Msa0379440 | MtrunA17_Chr2g0324721 | 36.691 | 139 | 77 | 4 | 29 | 159 | 29 | 164 | 5.30e-17 | 75.5 |
| Msa0379440 | MtrunA17_Chr4g0062341 | 32.680 | 153 | 87 | 6 | 13 | 159 | 24 | 166 | 8.54e-17 | 74.3 |
| Msa0379440 | MtrunA17_Chr4g0062311 | 32.680 | 153 | 87 | 6 | 13 | 159 | 24 | 166 | 8.54e-17 | 74.3 |
| Msa0379440 | MtrunA17_Chr4g0001571 | 38.835 | 103 | 61 | 2 | 21 | 122 | 23 | 124 | 1.77e-16 | 73.6 |
| Msa0379440 | MtrunA17_Chr6g0453801 | 30.409 | 171 | 100 | 6 | 1 | 167 | 8 | 163 | 3.38e-16 | 72.8 |
| Msa0379440 | MtrunA17_Chr2g0324711 | 36.364 | 121 | 70 | 3 | 8 | 121 | 2 | 122 | 6.62e-16 | 74.7 |
| Msa0379440 | MtrunA17_Chr6g0458331 | 37.864 | 103 | 58 | 3 | 24 | 121 | 34 | 135 | 7.43e-16 | 71.6 |
| Msa0379440 | MtrunA17_Chr4g0040291 | 32.258 | 155 | 100 | 4 | 29 | 180 | 27 | 179 | 1.75e-15 | 71.2 |
| Msa0379440 | MtrunA17_Chr1g0150131 | 38.614 | 101 | 58 | 2 | 42 | 138 | 45 | 145 | 2.41e-14 | 68.2 |
| Msa0379440 | MtrunA17_Chr3g0136871 | 35.714 | 98 | 62 | 1 | 42 | 138 | 47 | 144 | 2.67e-14 | 67.8 |
| Msa0379440 | MtrunA17_Chr4g0073901 | 30.714 | 140 | 91 | 3 | 1 | 134 | 3 | 142 | 5.00e-14 | 67.0 |
| Msa0379440 | MtrunA17_Chr8g0385021 | 29.381 | 194 | 109 | 7 | 8 | 174 | 1 | 193 | 8.36e-14 | 68.2 |
| Msa0379440 | MtrunA17_Chr8g0385031 | 31.250 | 176 | 100 | 6 | 8 | 166 | 1 | 172 | 1.04e-13 | 67.8 |
| Msa0379440 | MtrunA17_Chr4g0064031 | 37.037 | 108 | 59 | 5 | 18 | 116 | 18 | 125 | 1.13e-13 | 65.9 |
| Msa0379440 | MtrunA17_Chr4g0073921 | 34.375 | 128 | 76 | 5 | 1 | 121 | 3 | 129 | 1.21e-13 | 67.4 |
| Msa0379440 | MtrunA17_Chr8g0380711 | 39.000 | 100 | 52 | 5 | 24 | 119 | 25 | 119 | 3.97e-13 | 63.2 |
| Msa0379440 | MtrunA17_Chr8g0385041 | 33.557 | 149 | 79 | 5 | 28 | 162 | 26 | 168 | 6.08e-13 | 65.9 |
| Msa0379440 | MtrunA17_Chr6g0453791 | 30.435 | 138 | 93 | 3 | 7 | 142 | 11 | 147 | 5.03e-12 | 61.6 |
| Msa0379440 | MtrunA17_Chr5g0440804 | 33.929 | 112 | 68 | 4 | 30 | 138 | 33 | 141 | 1.72e-11 | 60.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0379440 | AT1G72230.1 | 47.340 | 188 | 83 | 4 | 3 | 183 | 1 | 179 | 1.75e-49 | 159 |
| Msa0379440 | AT1G22480.1 | 64.130 | 92 | 33 | 0 | 35 | 126 | 27 | 118 | 3.86e-36 | 124 |
| Msa0379440 | AT2G32300.1 | 43.651 | 126 | 70 | 1 | 4 | 128 | 3 | 128 | 8.17e-30 | 110 |
| Msa0379440 | AT2G32300.2 | 38.068 | 176 | 87 | 3 | 4 | 178 | 33 | 187 | 1.89e-29 | 110 |
| Msa0379440 | AT3G60270.1 | 47.115 | 104 | 55 | 0 | 23 | 126 | 22 | 125 | 5.00e-28 | 104 |
| Msa0379440 | AT5G07475.1 | 37.179 | 156 | 81 | 3 | 24 | 179 | 27 | 165 | 1.42e-26 | 100 |
| Msa0379440 | AT2G26720.1 | 37.576 | 165 | 99 | 4 | 25 | 186 | 27 | 190 | 9.75e-26 | 99.0 |
| Msa0379440 | AT2G31050.1 | 45.217 | 115 | 58 | 3 | 25 | 137 | 27 | 138 | 2.21e-25 | 97.8 |
| Msa0379440 | AT2G44790.1 | 50.526 | 95 | 45 | 1 | 35 | 127 | 36 | 130 | 4.35e-25 | 97.1 |
| Msa0379440 | AT5G26330.1 | 44.554 | 101 | 53 | 2 | 24 | 121 | 21 | 121 | 9.14e-24 | 93.2 |
| Msa0379440 | AT3G27200.1 | 39.161 | 143 | 76 | 4 | 1 | 140 | 1 | 135 | 5.89e-23 | 90.9 |
| Msa0379440 | AT3G17675.1 | 38.095 | 105 | 64 | 1 | 18 | 121 | 23 | 127 | 3.10e-21 | 85.1 |
| Msa0379440 | AT3G60280.1 | 42.157 | 102 | 59 | 0 | 23 | 124 | 20 | 121 | 1.67e-20 | 85.5 |
| Msa0379440 | AT5G20230.1 | 36.628 | 172 | 90 | 5 | 27 | 179 | 25 | 196 | 2.59e-18 | 79.3 |
| Msa0379440 | AT5G53870.2 | 32.620 | 187 | 103 | 5 | 7 | 175 | 7 | 188 | 3.14e-18 | 81.6 |
| Msa0379440 | AT5G53870.1 | 32.620 | 187 | 103 | 5 | 7 | 175 | 7 | 188 | 6.12e-18 | 80.9 |
| Msa0379440 | AT4G31840.1 | 33.803 | 142 | 86 | 4 | 3 | 136 | 1 | 142 | 3.84e-17 | 75.5 |
| Msa0379440 | AT2G25060.1 | 37.719 | 114 | 65 | 3 | 28 | 135 | 32 | 145 | 7.58e-17 | 75.1 |
| Msa0379440 | AT3G18590.1 | 34.646 | 127 | 76 | 2 | 1 | 121 | 1 | 126 | 1.28e-16 | 74.3 |
| Msa0379440 | AT4G28365.1 | 32.895 | 152 | 94 | 4 | 29 | 177 | 31 | 177 | 6.39e-16 | 72.8 |
| Msa0379440 | AT1G64640.1 | 37.705 | 122 | 69 | 3 | 24 | 138 | 30 | 151 | 1.04e-15 | 72.0 |
| Msa0379440 | AT5G15350.1 | 36.364 | 121 | 70 | 4 | 8 | 122 | 7 | 126 | 3.04e-15 | 70.5 |
| Msa0379440 | AT5G57920.1 | 37.113 | 97 | 59 | 2 | 42 | 137 | 43 | 138 | 4.36e-15 | 70.5 |
| Msa0379440 | AT4G27520.1 | 34.722 | 144 | 83 | 4 | 10 | 142 | 9 | 152 | 5.10e-15 | 72.4 |
| Msa0379440 | AT5G57920.3 | 37.113 | 97 | 59 | 2 | 42 | 137 | 75 | 170 | 5.42e-15 | 70.9 |
| Msa0379440 | AT5G57920.2 | 37.113 | 97 | 59 | 2 | 42 | 137 | 42 | 137 | 7.75e-15 | 69.7 |
| Msa0379440 | AT3G53330.1 | 32.540 | 126 | 78 | 4 | 23 | 144 | 184 | 306 | 1.67e-14 | 70.5 |
| Msa0379440 | AT4G30590.1 | 33.673 | 98 | 64 | 1 | 42 | 138 | 48 | 145 | 4.94e-14 | 67.8 |
| Msa0379440 | AT4G12880.1 | 34.167 | 120 | 72 | 5 | 7 | 122 | 10 | 126 | 6.72e-14 | 66.2 |
| Msa0379440 | AT1G45063.2 | 36.207 | 116 | 63 | 5 | 26 | 135 | 148 | 258 | 9.28e-14 | 68.2 |
| Msa0379440 | AT1G45063.1 | 36.207 | 116 | 63 | 5 | 26 | 135 | 148 | 258 | 1.22e-13 | 68.6 |
| Msa0379440 | AT5G14345.1 | 30.469 | 128 | 81 | 3 | 13 | 133 | 2 | 128 | 1.71e-13 | 65.1 |
| Msa0379440 | AT3G20570.1 | 33.721 | 172 | 102 | 5 | 9 | 171 | 15 | 183 | 3.14e-13 | 65.9 |
| Msa0379440 | AT1G48940.1 | 37.755 | 98 | 54 | 3 | 30 | 121 | 29 | 125 | 5.71e-13 | 64.7 |
| Msa0379440 | AT4G32490.1 | 30.841 | 107 | 71 | 2 | 29 | 132 | 33 | 139 | 1.19e-12 | 64.3 |
| Msa0379440 | AT2G02850.1 | 39.000 | 100 | 51 | 4 | 24 | 119 | 33 | 126 | 1.84e-12 | 62.0 |
| Msa0379440 | AT1G79800.1 | 33.333 | 117 | 67 | 3 | 29 | 135 | 36 | 151 | 2.03e-12 | 63.2 |
| Msa0379440 | AT2G23990.1 | 33.684 | 95 | 61 | 2 | 42 | 134 | 47 | 141 | 2.87e-12 | 63.2 |
| Msa0379440 | AT5G25090.1 | 32.258 | 124 | 77 | 3 | 7 | 125 | 9 | 130 | 1.94e-11 | 60.5 |
| Msa0379440 | AT4G01380.1 | 31.193 | 109 | 65 | 4 | 33 | 133 | 78 | 184 | 4.21e-11 | 60.1 |
| Msa0379440 | AT3G01070.1 | 38.462 | 117 | 66 | 3 | 9 | 122 | 12 | 125 | 5.78e-11 | 58.9 |
Find 79 sgRNAs with CRISPR-Local
Find 188 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAAACAAAAGTTTGTTTAAA+AGG | 0.157957 | 3_1:-80571925 | None:intergenic |
| GTTTGATCTATCCAGATTTA+TGG | 0.172815 | 3_1:-80570908 | Msa0379440:three_prime_UTR |
| CTTCTTCTTAGCAATTAATA+TGG | 0.256926 | 3_1:-80571715 | Msa0379440:CDS |
| AGTGGTGGTGGTGGAGGGTG+TGG | 0.258082 | 3_1:+80571120 | None:intergenic |
| GGTGTGGTGGTGGTTGCAGC+AGG | 0.286767 | 3_1:+80571136 | None:intergenic |
| GGTGGTGGAGGGTGTGGTGG+TGG | 0.288673 | 3_1:+80571126 | None:intergenic |
| GGTGGTGGTGGAGGGTGTGG+TGG | 0.299929 | 3_1:+80571123 | None:intergenic |
| GGAAGGAGTGGTGGTGGTGG+AGG | 0.314330 | 3_1:+80571114 | None:intergenic |
| GATCTTGATCAGTTATATAT+TGG | 0.317167 | 3_1:-80571026 | Msa0379440:CDS |
| TGTTGAAAACGTATAGATAA+AGG | 0.335284 | 3_1:+80570640 | None:intergenic |
| GAAACTTTCTGTTAAGGTTA+AGG | 0.337776 | 3_1:-80571233 | Msa0379440:CDS |
| TACTTCATATGTGCTGTTCC+TGG | 0.349993 | 3_1:-80571274 | Msa0379440:CDS |
| GATAAATCAGGTTGGGCAAT+TGG | 0.365257 | 3_1:-80571657 | Msa0379440:CDS |
| GACTATAAATCATGCACAAC+TGG | 0.368543 | 3_1:-80571361 | Msa0379440:CDS |
| GTAGTATTAATTAGTAATCT+AGG | 0.376294 | 3_1:-80570877 | Msa0379440:three_prime_UTR |
| ACTATGACAGTGTTCAACTA+TGG | 0.385966 | 3_1:-80571418 | Msa0379440:intron |
| TACAAGAGCCTCCATAAATC+TGG | 0.389722 | 3_1:+80570897 | None:intergenic |
| GAAGGAGTGGTGGTGGTGGA+GGG | 0.390042 | 3_1:+80571115 | None:intergenic |
| GTCATTTCCTTCATTGTGAT+AGG | 0.401601 | 3_1:+80570728 | None:intergenic |
| TGTGGAAGGAGTGGTGGTGG+TGG | 0.402692 | 3_1:+80571111 | None:intergenic |
| TGAGGATATTGCTGTGATAA+TGG | 0.412201 | 3_1:+80571836 | None:intergenic |
| AATAGATAATAATGTGAAAA+GGG | 0.424945 | 3_1:+80570944 | None:intergenic |
| TGGCATGAAACTTTCTGTTA+AGG | 0.430118 | 3_1:-80571239 | Msa0379440:CDS |
| TGTGGTGGTGGTTGCAGCAG+GGG | 0.433694 | 3_1:+80571138 | None:intergenic |
| TAATAGATAATAATGTGAAA+AGG | 0.436826 | 3_1:+80570943 | None:intergenic |
| TCCTGCTTTCTTGAGAGGGA+TGG | 0.445617 | 3_1:+80571303 | None:intergenic |
| CCGTTCACTATCTCTTAAGA+TGG | 0.450951 | 3_1:-80571766 | Msa0379440:exon |
| CCTCTGTCCTGACTATATCT+TGG | 0.456089 | 3_1:+80570989 | None:intergenic |
| TCTGCAACACCATCACCATC+AGG | 0.461815 | 3_1:-80571184 | Msa0379440:CDS |
| GTGTGGTGGTGGTTGCAGCA+GGG | 0.463658 | 3_1:+80571137 | None:intergenic |
| AGAGATAGTGAACGGAAAGC+TGG | 0.469761 | 3_1:+80571774 | None:intergenic |
| ATGCCACCTGTGCAATGTCC+AGG | 0.481287 | 3_1:+80571256 | None:intergenic |
| GTGTTCCTGCTTTCTTGAGA+GGG | 0.482705 | 3_1:+80571299 | None:intergenic |
| TGTGTTCCTGCTTTCTTGAG+AGG | 0.493116 | 3_1:+80571298 | None:intergenic |
| TTTCTTGAGAGGGATGGTTG+TGG | 0.493786 | 3_1:+80571309 | None:intergenic |
| CACACCGTTGGAGATAAATC+AGG | 0.494660 | 3_1:-80571669 | Msa0379440:CDS |
| GGCTAGTGACAAAACATTTG+CGG | 0.495560 | 3_1:-80571616 | Msa0379440:CDS |
| GGACAGAGGCAGTGCTTCCA+TGG | 0.495683 | 3_1:-80570975 | Msa0379440:three_prime_UTR |
| TTTGCGGTTGGTGACAGTCT+TGG | 0.500707 | 3_1:-80571600 | Msa0379440:intron |
| TCTAAAGGAAGGAGGCTATG+AGG | 0.511510 | 3_1:+80571818 | None:intergenic |
| CGTTGGAGATAAATCAGGTT+GGG | 0.514147 | 3_1:-80571664 | Msa0379440:CDS |
| GGTTGCAGCAGGGGTGCCAT+CGG | 0.524569 | 3_1:+80571147 | None:intergenic |
| AAGAAGCCTAAAATCAAAGA+AGG | 0.528032 | 3_1:+80571732 | None:intergenic |
| TATAATTGCAAGCAAAGAAG+AGG | 0.528967 | 3_1:+80571869 | None:intergenic |
| CTTGCAACTGTCCACACCGT+TGG | 0.529565 | 3_1:-80571681 | Msa0379440:CDS |
| TTGTGTGGAAGGAGTGGTGG+TGG | 0.529906 | 3_1:+80571108 | None:intergenic |
| TTGACAACCTATCACAATGA+AGG | 0.548937 | 3_1:-80570735 | Msa0379440:three_prime_UTR |
| GCAGCAGGGGTGCCATCGGA+AGG | 0.553762 | 3_1:+80571151 | None:intergenic |
| ACCATCCCTCTCAAGAAAGC+AGG | 0.564418 | 3_1:-80571304 | Msa0379440:CDS |
| GATTTGAGTATGTTCTCTCG+TGG | 0.566319 | 3_1:-80570667 | Msa0379440:three_prime_UTR |
| GAACCTTTCCCTGATGGTGA+TGG | 0.566964 | 3_1:+80571175 | None:intergenic |
| GTTCCTGGACATTGCACAGG+TGG | 0.574513 | 3_1:-80571259 | Msa0379440:CDS |
| GAAGGTGAACCTTTCCCTGA+TGG | 0.578557 | 3_1:+80571169 | None:intergenic |
| ACAGTGTTCAACTATGGTGC+TGG | 0.581813 | 3_1:-80571412 | Msa0379440:intron |
| TGATCTATCCAGATTTATGG+AGG | 0.584610 | 3_1:-80570905 | Msa0379440:three_prime_UTR |
| CCAACCTGATTTATCTCCAA+CGG | 0.588831 | 3_1:+80571665 | None:intergenic |
| GTGTGGACAGTTGCAAGAGT+TGG | 0.591396 | 3_1:+80571687 | None:intergenic |
| AGTGACAAAACATTTGCGGT+TGG | 0.594495 | 3_1:-80571612 | Msa0379440:CDS |
| GCTGTTCCTGGACATTGCAC+AGG | 0.594776 | 3_1:-80571262 | Msa0379440:CDS |
| GATGGTGATGGTGTTGCAGA+AGG | 0.612608 | 3_1:+80571187 | None:intergenic |
| TGAAAAGGGAAAAGAAACCA+TGG | 0.614527 | 3_1:+80570958 | None:intergenic |
| TTGGTTCTGATTATAACACA+TGG | 0.617869 | 3_1:-80571638 | Msa0379440:CDS |
| AGCTGAAGATGCACTTTGTG+TGG | 0.619201 | 3_1:+80571093 | None:intergenic |
| ACGGAAAGCTGGAAAACAGA+TGG | 0.622538 | 3_1:+80571785 | None:intergenic |
| CCATCTTAAGAGATAGTGAA+CGG | 0.626253 | 3_1:+80571766 | None:intergenic |
| CTGCAACACCATCACCATCA+GGG | 0.628504 | 3_1:-80571183 | Msa0379440:CDS |
| CCAAGATATAGTCAGGACAG+AGG | 0.629921 | 3_1:-80570989 | Msa0379440:three_prime_UTR |
| GAAGATGCACTTTGTGTGGA+AGG | 0.630949 | 3_1:+80571097 | None:intergenic |
| TGCACTTTGTGTGGAAGGAG+TGG | 0.632667 | 3_1:+80571102 | None:intergenic |
| CCGTTGGAGATAAATCAGGT+TGG | 0.633245 | 3_1:-80571665 | Msa0379440:CDS |
| TTGCAAGCAAAGAAGAGGAG+AGG | 0.633584 | 3_1:+80571874 | None:intergenic |
| GGGAAAGGTTCACCTTCCGA+TGG | 0.642087 | 3_1:-80571163 | Msa0379440:CDS |
| ACTTTGTGTGGAAGGAGTGG+TGG | 0.644852 | 3_1:+80571105 | None:intergenic |
| TCACAATGAAGGAAATGACA+TGG | 0.649257 | 3_1:-80570724 | Msa0379440:three_prime_UTR |
| ACACCATCACCATCAGGGAA+AGG | 0.655836 | 3_1:-80571178 | Msa0379440:CDS |
| TGGTTCTGATTATAACACAT+GGG | 0.658992 | 3_1:-80571637 | Msa0379440:CDS |
| CTGATTTATCTCCAACGGTG+TGG | 0.663800 | 3_1:+80571670 | None:intergenic |
| TCAATTAGTACAGACAGTAG+TGG | 0.678569 | 3_1:-80571334 | Msa0379440:CDS |
| CTATGGTGCTGGACACACAG+TGG | 0.764173 | 3_1:-80571401 | Msa0379440:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATATTAGATTTGTAAATTG+TGG | + | chr3_1:80571122-80571141 | None:intergenic | 15.0% |
| !! | AATAGATAATAATGTGAAAA+GGG | + | chr3_1:80571628-80571647 | None:intergenic | 15.0% |
| !! | TAATAGATAATAATGTGAAA+AGG | + | chr3_1:80571629-80571648 | None:intergenic | 15.0% |
| !! | TATATTAGATTTGTAAATTG+TGG | + | chr3_1:80571122-80571141 | None:intergenic | 15.0% |
| !! | AATAGATAATAATGTGAAAA+GGG | + | chr3_1:80571628-80571647 | None:intergenic | 15.0% |
| !! | TAATAGATAATAATGTGAAA+AGG | + | chr3_1:80571629-80571648 | None:intergenic | 15.0% |
| !! | GTAGTATTAATTAGTAATCT+AGG | - | chr3_1:80571692-80571711 | Msa0379440:CDS | 20.0% |
| !!! | TGTTTGTTTTTTTACTTCTT+TGG | - | chr3_1:80571778-80571797 | Msa0379440:five_prime_UTR | 20.0% |
| !!! | GTTTGTTTTTTTACTTCTTT+GGG | - | chr3_1:80571779-80571798 | Msa0379440:five_prime_UTR | 20.0% |
| !!! | TCAATTCAATTTTTTTTAGG+TGG | - | chr3_1:80571802-80571821 | Msa0379440:five_prime_UTR | 20.0% |
| !!! | TGCATTTTAGACATTATTTT+AGG | + | chr3_1:80571877-80571896 | None:intergenic | 20.0% |
| !! | GTAGTATTAATTAGTAATCT+AGG | - | chr3_1:80571692-80571711 | Msa0379440:CDS | 20.0% |
| !!! | TGTTTGTTTTTTTACTTCTT+TGG | - | chr3_1:80571778-80571797 | Msa0379440:five_prime_UTR | 20.0% |
| !!! | GTTTGTTTTTTTACTTCTTT+GGG | - | chr3_1:80571779-80571798 | Msa0379440:five_prime_UTR | 20.0% |
| !!! | TCAATTCAATTTTTTTTAGG+TGG | - | chr3_1:80571802-80571821 | Msa0379440:five_prime_UTR | 20.0% |
| !!! | TGCATTTTAGACATTATTTT+AGG | + | chr3_1:80571877-80571896 | None:intergenic | 20.0% |
| !!! | TCTAATCCTTCTTTGATTTT+AGG | - | chr3_1:80570831-80570850 | Msa0379440:three_prime_UTR | 25.0% |
| ! | CTTCTTCTTAGCAATTAATA+TGG | - | chr3_1:80570854-80570873 | Msa0379440:three_prime_UTR | 25.0% |
| ! | GTGAAAAATAAAGCAACAAT+TGG | + | chr3_1:80571514-80571533 | None:intergenic | 25.0% |
| !!! | CTTTATTTTTCACTGTTTCA+TGG | - | chr3_1:80571521-80571540 | Msa0379440:intron | 25.0% |
| ! | GATCTTGATCAGTTATATAT+TGG | - | chr3_1:80571543-80571562 | Msa0379440:intron | 25.0% |
| !! | TAATTTTCCAAGATATAGTC+AGG | - | chr3_1:80571573-80571592 | Msa0379440:intron | 25.0% |
| !! | TTTTGTGCTTGAATGATTAT+TGG | - | chr3_1:80571745-80571764 | Msa0379440:CDS | 25.0% |
| !!! | GGGTCAATTCAATTTTTTTT+AGG | - | chr3_1:80571799-80571818 | Msa0379440:five_prime_UTR | 25.0% |
| !!! | AATTTTTTTTAGGTGGTAGT+GGG | - | chr3_1:80571809-80571828 | Msa0379440:five_prime_UTR | 25.0% |
| !!! | TCTAATCCTTCTTTGATTTT+AGG | - | chr3_1:80570831-80570850 | Msa0379440:three_prime_UTR | 25.0% |
| ! | CTTCTTCTTAGCAATTAATA+TGG | - | chr3_1:80570854-80570873 | Msa0379440:three_prime_UTR | 25.0% |
| ! | GTGAAAAATAAAGCAACAAT+TGG | + | chr3_1:80571514-80571533 | None:intergenic | 25.0% |
| !!! | CTTTATTTTTCACTGTTTCA+TGG | - | chr3_1:80571521-80571540 | Msa0379440:intron | 25.0% |
| ! | GATCTTGATCAGTTATATAT+TGG | - | chr3_1:80571543-80571562 | Msa0379440:intron | 25.0% |
| !! | TAATTTTCCAAGATATAGTC+AGG | - | chr3_1:80571573-80571592 | Msa0379440:intron | 25.0% |
| !! | TTTTGTGCTTGAATGATTAT+TGG | - | chr3_1:80571745-80571764 | Msa0379440:CDS | 25.0% |
| !!! | GGGTCAATTCAATTTTTTTT+AGG | - | chr3_1:80571799-80571818 | Msa0379440:five_prime_UTR | 25.0% |
| !!! | AATTTTTTTTAGGTGGTAGT+GGG | - | chr3_1:80571809-80571828 | Msa0379440:five_prime_UTR | 25.0% |
| TATAATTGCAAGCAAAGAAG+AGG | + | chr3_1:80570703-80570722 | None:intergenic | 30.0% | |
| !!! | ATGTTTTTTCTAAAGGAAGG+AGG | + | chr3_1:80570762-80570781 | None:intergenic | 30.0% |
| !!! | GCTATGTTTTTTCTAAAGGA+AGG | + | chr3_1:80570765-80570784 | None:intergenic | 30.0% |
| !!! | GATGGCTATGTTTTTTCTAA+AGG | + | chr3_1:80570769-80570788 | None:intergenic | 30.0% |
| AAGAAGCCTAAAATCAAAGA+AGG | + | chr3_1:80570840-80570859 | None:intergenic | 30.0% | |
| !! | TTGGTTCTGATTATAACACA+TGG | - | chr3_1:80570931-80570950 | Msa0379440:three_prime_UTR | 30.0% |
| !! | TGGTTCTGATTATAACACAT+GGG | - | chr3_1:80570932-80570951 | Msa0379440:three_prime_UTR | 30.0% |
| GAAACTTTCTGTTAAGGTTA+AGG | - | chr3_1:80571336-80571355 | Msa0379440:CDS | 30.0% | |
| GTTTGATCTATCCAGATTTA+TGG | - | chr3_1:80571661-80571680 | Msa0379440:CDS | 30.0% | |
| !!! | CAATTTTTTTTAGGTGGTAG+TGG | - | chr3_1:80571808-80571827 | Msa0379440:five_prime_UTR | 30.0% |
| TATAATTGCAAGCAAAGAAG+AGG | + | chr3_1:80570703-80570722 | None:intergenic | 30.0% | |
| !!! | ATGTTTTTTCTAAAGGAAGG+AGG | + | chr3_1:80570762-80570781 | None:intergenic | 30.0% |
| !!! | GCTATGTTTTTTCTAAAGGA+AGG | + | chr3_1:80570765-80570784 | None:intergenic | 30.0% |
| !!! | GATGGCTATGTTTTTTCTAA+AGG | + | chr3_1:80570769-80570788 | None:intergenic | 30.0% |
| AAGAAGCCTAAAATCAAAGA+AGG | + | chr3_1:80570840-80570859 | None:intergenic | 30.0% | |
| !! | TTGGTTCTGATTATAACACA+TGG | - | chr3_1:80570931-80570950 | Msa0379440:three_prime_UTR | 30.0% |
| !! | TGGTTCTGATTATAACACAT+GGG | - | chr3_1:80570932-80570951 | Msa0379440:three_prime_UTR | 30.0% |
| GAAACTTTCTGTTAAGGTTA+AGG | - | chr3_1:80571336-80571355 | Msa0379440:CDS | 30.0% | |
| GTTTGATCTATCCAGATTTA+TGG | - | chr3_1:80571661-80571680 | Msa0379440:CDS | 30.0% | |
| !!! | CAATTTTTTTTAGGTGGTAG+TGG | - | chr3_1:80571808-80571827 | Msa0379440:five_prime_UTR | 30.0% |
| TGAGGATATTGCTGTGATAA+TGG | + | chr3_1:80570736-80570755 | None:intergenic | 35.0% | |
| CCATCTTAAGAGATAGTGAA+CGG | + | chr3_1:80570806-80570825 | None:intergenic | 35.0% | |
| ACTATGACAGTGTTCAACTA+TGG | - | chr3_1:80571151-80571170 | Msa0379440:CDS | 35.0% | |
| GACTATAAATCATGCACAAC+TGG | - | chr3_1:80571208-80571227 | Msa0379440:CDS | 35.0% | |
| TCAATTAGTACAGACAGTAG+TGG | - | chr3_1:80571235-80571254 | Msa0379440:CDS | 35.0% | |
| TGGCATGAAACTTTCTGTTA+AGG | - | chr3_1:80571330-80571349 | Msa0379440:CDS | 35.0% | |
| TGAAAAGGGAAAAGAAACCA+TGG | + | chr3_1:80571614-80571633 | None:intergenic | 35.0% | |
| TGATCTATCCAGATTTATGG+AGG | - | chr3_1:80571664-80571683 | Msa0379440:CDS | 35.0% | |
| TTGACAACCTATCACAATGA+AGG | - | chr3_1:80571834-80571853 | Msa0379440:five_prime_UTR | 35.0% | |
| GTCATTTCCTTCATTGTGAT+AGG | + | chr3_1:80571844-80571863 | None:intergenic | 35.0% | |
| TCACAATGAAGGAAATGACA+TGG | - | chr3_1:80571845-80571864 | Msa0379440:five_prime_UTR | 35.0% | |
| TGAGGATATTGCTGTGATAA+TGG | + | chr3_1:80570736-80570755 | None:intergenic | 35.0% | |
| CCATCTTAAGAGATAGTGAA+CGG | + | chr3_1:80570806-80570825 | None:intergenic | 35.0% | |
| ACTATGACAGTGTTCAACTA+TGG | - | chr3_1:80571151-80571170 | Msa0379440:CDS | 35.0% | |
| GACTATAAATCATGCACAAC+TGG | - | chr3_1:80571208-80571227 | Msa0379440:CDS | 35.0% | |
| TCAATTAGTACAGACAGTAG+TGG | - | chr3_1:80571235-80571254 | Msa0379440:CDS | 35.0% | |
| TGGCATGAAACTTTCTGTTA+AGG | - | chr3_1:80571330-80571349 | Msa0379440:CDS | 35.0% | |
| TGAAAAGGGAAAAGAAACCA+TGG | + | chr3_1:80571614-80571633 | None:intergenic | 35.0% | |
| TGATCTATCCAGATTTATGG+AGG | - | chr3_1:80571664-80571683 | Msa0379440:CDS | 35.0% | |
| TTGACAACCTATCACAATGA+AGG | - | chr3_1:80571834-80571853 | Msa0379440:five_prime_UTR | 35.0% | |
| GTCATTTCCTTCATTGTGAT+AGG | + | chr3_1:80571844-80571863 | None:intergenic | 35.0% | |
| TCACAATGAAGGAAATGACA+TGG | - | chr3_1:80571845-80571864 | Msa0379440:five_prime_UTR | 35.0% | |
| CCGTTCACTATCTCTTAAGA+TGG | - | chr3_1:80570803-80570822 | Msa0379440:three_prime_UTR | 40.0% | |
| CCAACCTGATTTATCTCCAA+CGG | + | chr3_1:80570907-80570926 | None:intergenic | 40.0% | |
| CGTTGGAGATAAATCAGGTT+GGG | - | chr3_1:80570905-80570924 | Msa0379440:three_prime_UTR | 40.0% | |
| !! | GATAAATCAGGTTGGGCAAT+TGG | - | chr3_1:80570912-80570931 | Msa0379440:three_prime_UTR | 40.0% |
| GGCTAGTGACAAAACATTTG+CGG | - | chr3_1:80570953-80570972 | Msa0379440:three_prime_UTR | 40.0% | |
| AGTGACAAAACATTTGCGGT+TGG | - | chr3_1:80570957-80570976 | Msa0379440:three_prime_UTR | 40.0% | |
| ! | TACTTCATATGTGCTGTTCC+TGG | - | chr3_1:80571295-80571314 | Msa0379440:CDS | 40.0% |
| TACAAGAGCCTCCATAAATC+TGG | + | chr3_1:80571675-80571694 | None:intergenic | 40.0% | |
| GATTTGAGTATGTTCTCTCG+TGG | - | chr3_1:80571902-80571921 | Msa0379440:five_prime_UTR | 40.0% | |
| CCGTTCACTATCTCTTAAGA+TGG | - | chr3_1:80570803-80570822 | Msa0379440:three_prime_UTR | 40.0% | |
| CCAACCTGATTTATCTCCAA+CGG | + | chr3_1:80570907-80570926 | None:intergenic | 40.0% | |
| CGTTGGAGATAAATCAGGTT+GGG | - | chr3_1:80570905-80570924 | Msa0379440:three_prime_UTR | 40.0% | |
| !! | GATAAATCAGGTTGGGCAAT+TGG | - | chr3_1:80570912-80570931 | Msa0379440:three_prime_UTR | 40.0% |
| GGCTAGTGACAAAACATTTG+CGG | - | chr3_1:80570953-80570972 | Msa0379440:three_prime_UTR | 40.0% | |
| AGTGACAAAACATTTGCGGT+TGG | - | chr3_1:80570957-80570976 | Msa0379440:three_prime_UTR | 40.0% | |
| ! | TACTTCATATGTGCTGTTCC+TGG | - | chr3_1:80571295-80571314 | Msa0379440:CDS | 40.0% |
| TACAAGAGCCTCCATAAATC+TGG | + | chr3_1:80571675-80571694 | None:intergenic | 40.0% | |
| GATTTGAGTATGTTCTCTCG+TGG | - | chr3_1:80571902-80571921 | Msa0379440:five_prime_UTR | 40.0% | |
| TTGCAAGCAAAGAAGAGGAG+AGG | + | chr3_1:80570698-80570717 | None:intergenic | 45.0% | |
| TCTAAAGGAAGGAGGCTATG+AGG | + | chr3_1:80570754-80570773 | None:intergenic | 45.0% | |
| ACGGAAAGCTGGAAAACAGA+TGG | + | chr3_1:80570787-80570806 | None:intergenic | 45.0% | |
| AGAGATAGTGAACGGAAAGC+TGG | + | chr3_1:80570798-80570817 | None:intergenic | 45.0% | |
| CTGATTTATCTCCAACGGTG+TGG | + | chr3_1:80570902-80570921 | None:intergenic | 45.0% | |
| CACACCGTTGGAGATAAATC+AGG | - | chr3_1:80570900-80570919 | Msa0379440:three_prime_UTR | 45.0% | |
| CCGTTGGAGATAAATCAGGT+TGG | - | chr3_1:80570904-80570923 | Msa0379440:three_prime_UTR | 45.0% | |
| ACAGTGTTCAACTATGGTGC+TGG | - | chr3_1:80571157-80571176 | Msa0379440:CDS | 45.0% | |
| TTTCTTGAGAGGGATGGTTG+TGG | + | chr3_1:80571263-80571282 | None:intergenic | 45.0% | |
| GTGTTCCTGCTTTCTTGAGA+GGG | + | chr3_1:80571273-80571292 | None:intergenic | 45.0% | |
| TGTGTTCCTGCTTTCTTGAG+AGG | + | chr3_1:80571274-80571293 | None:intergenic | 45.0% | |
| GAAGATGCACTTTGTGTGGA+AGG | + | chr3_1:80571475-80571494 | None:intergenic | 45.0% | |
| AGCTGAAGATGCACTTTGTG+TGG | + | chr3_1:80571479-80571498 | None:intergenic | 45.0% | |
| CCTCTGTCCTGACTATATCT+TGG | + | chr3_1:80571583-80571602 | None:intergenic | 45.0% | |
| CCAAGATATAGTCAGGACAG+AGG | - | chr3_1:80571580-80571599 | Msa0379440:intron | 45.0% | |
| TTGCAAGCAAAGAAGAGGAG+AGG | + | chr3_1:80570698-80570717 | None:intergenic | 45.0% | |
| TCTAAAGGAAGGAGGCTATG+AGG | + | chr3_1:80570754-80570773 | None:intergenic | 45.0% | |
| ACGGAAAGCTGGAAAACAGA+TGG | + | chr3_1:80570787-80570806 | None:intergenic | 45.0% | |
| AGAGATAGTGAACGGAAAGC+TGG | + | chr3_1:80570798-80570817 | None:intergenic | 45.0% | |
| CTGATTTATCTCCAACGGTG+TGG | + | chr3_1:80570902-80570921 | None:intergenic | 45.0% | |
| CACACCGTTGGAGATAAATC+AGG | - | chr3_1:80570900-80570919 | Msa0379440:three_prime_UTR | 45.0% | |
| CCGTTGGAGATAAATCAGGT+TGG | - | chr3_1:80570904-80570923 | Msa0379440:three_prime_UTR | 45.0% | |
| ACAGTGTTCAACTATGGTGC+TGG | - | chr3_1:80571157-80571176 | Msa0379440:CDS | 45.0% | |
| TTTCTTGAGAGGGATGGTTG+TGG | + | chr3_1:80571263-80571282 | None:intergenic | 45.0% | |
| GTGTTCCTGCTTTCTTGAGA+GGG | + | chr3_1:80571273-80571292 | None:intergenic | 45.0% | |
| TGTGTTCCTGCTTTCTTGAG+AGG | + | chr3_1:80571274-80571293 | None:intergenic | 45.0% | |
| GAAGATGCACTTTGTGTGGA+AGG | + | chr3_1:80571475-80571494 | None:intergenic | 45.0% | |
| AGCTGAAGATGCACTTTGTG+TGG | + | chr3_1:80571479-80571498 | None:intergenic | 45.0% | |
| CCTCTGTCCTGACTATATCT+TGG | + | chr3_1:80571583-80571602 | None:intergenic | 45.0% | |
| CCAAGATATAGTCAGGACAG+AGG | - | chr3_1:80571580-80571599 | Msa0379440:intron | 45.0% | |
| !! | AAAAAAAAAAAAAAAAACTT+TGG | - | chr3_1:80570667-80570686 | Msa0379440:three_prime_UTR | 5.0% |
| !! | AAAAAAAAAAAAAAAAACTT+TGG | - | chr3_1:80570667-80570686 | Msa0379440:three_prime_UTR | 5.0% |
| GTGTGGACAGTTGCAAGAGT+TGG | + | chr3_1:80570885-80570904 | None:intergenic | 50.0% | |
| !! | TTTGCGGTTGGTGACAGTCT+TGG | - | chr3_1:80570969-80570988 | Msa0379440:three_prime_UTR | 50.0% |
| ACCATCCCTCTCAAGAAAGC+AGG | - | chr3_1:80571265-80571284 | Msa0379440:CDS | 50.0% | |
| TCCTGCTTTCTTGAGAGGGA+TGG | + | chr3_1:80571269-80571288 | None:intergenic | 50.0% | |
| !! | GATGGTGATGGTGTTGCAGA+AGG | + | chr3_1:80571385-80571404 | None:intergenic | 50.0% |
| TCTGCAACACCATCACCATC+AGG | - | chr3_1:80571385-80571404 | Msa0379440:CDS | 50.0% | |
| CTGCAACACCATCACCATCA+GGG | - | chr3_1:80571386-80571405 | Msa0379440:CDS | 50.0% | |
| ACACCATCACCATCAGGGAA+AGG | - | chr3_1:80571391-80571410 | Msa0379440:CDS | 50.0% | |
| ! | GAACCTTTCCCTGATGGTGA+TGG | + | chr3_1:80571397-80571416 | None:intergenic | 50.0% |
| GAAGGTGAACCTTTCCCTGA+TGG | + | chr3_1:80571403-80571422 | None:intergenic | 50.0% | |
| ACTTTGTGTGGAAGGAGTGG+TGG | + | chr3_1:80571467-80571486 | None:intergenic | 50.0% | |
| TGCACTTTGTGTGGAAGGAG+TGG | + | chr3_1:80571470-80571489 | None:intergenic | 50.0% | |
| GTGTGGACAGTTGCAAGAGT+TGG | + | chr3_1:80570885-80570904 | None:intergenic | 50.0% | |
| !! | TTTGCGGTTGGTGACAGTCT+TGG | - | chr3_1:80570969-80570988 | Msa0379440:three_prime_UTR | 50.0% |
| ACCATCCCTCTCAAGAAAGC+AGG | - | chr3_1:80571265-80571284 | Msa0379440:CDS | 50.0% | |
| TCCTGCTTTCTTGAGAGGGA+TGG | + | chr3_1:80571269-80571288 | None:intergenic | 50.0% | |
| !! | GATGGTGATGGTGTTGCAGA+AGG | + | chr3_1:80571385-80571404 | None:intergenic | 50.0% |
| TCTGCAACACCATCACCATC+AGG | - | chr3_1:80571385-80571404 | Msa0379440:CDS | 50.0% | |
| CTGCAACACCATCACCATCA+GGG | - | chr3_1:80571386-80571405 | Msa0379440:CDS | 50.0% | |
| ACACCATCACCATCAGGGAA+AGG | - | chr3_1:80571391-80571410 | Msa0379440:CDS | 50.0% | |
| ! | GAACCTTTCCCTGATGGTGA+TGG | + | chr3_1:80571397-80571416 | None:intergenic | 50.0% |
| GAAGGTGAACCTTTCCCTGA+TGG | + | chr3_1:80571403-80571422 | None:intergenic | 50.0% | |
| ACTTTGTGTGGAAGGAGTGG+TGG | + | chr3_1:80571467-80571486 | None:intergenic | 50.0% | |
| TGCACTTTGTGTGGAAGGAG+TGG | + | chr3_1:80571470-80571489 | None:intergenic | 50.0% | |
| CTTGCAACTGTCCACACCGT+TGG | - | chr3_1:80570888-80570907 | Msa0379440:three_prime_UTR | 55.0% | |
| ! | CTATGGTGCTGGACACACAG+TGG | - | chr3_1:80571168-80571187 | Msa0379440:CDS | 55.0% |
| GCTGTTCCTGGACATTGCAC+AGG | - | chr3_1:80571307-80571326 | Msa0379440:CDS | 55.0% | |
| GTTCCTGGACATTGCACAGG+TGG | - | chr3_1:80571310-80571329 | Msa0379440:CDS | 55.0% | |
| ATGCCACCTGTGCAATGTCC+AGG | + | chr3_1:80571316-80571335 | None:intergenic | 55.0% | |
| GGGAAAGGTTCACCTTCCGA+TGG | - | chr3_1:80571406-80571425 | Msa0379440:CDS | 55.0% | |
| TTGTGTGGAAGGAGTGGTGG+TGG | + | chr3_1:80571464-80571483 | None:intergenic | 55.0% | |
| CTTGCAACTGTCCACACCGT+TGG | - | chr3_1:80570888-80570907 | Msa0379440:three_prime_UTR | 55.0% | |
| ! | CTATGGTGCTGGACACACAG+TGG | - | chr3_1:80571168-80571187 | Msa0379440:CDS | 55.0% |
| GCTGTTCCTGGACATTGCAC+AGG | - | chr3_1:80571307-80571326 | Msa0379440:CDS | 55.0% | |
| GTTCCTGGACATTGCACAGG+TGG | - | chr3_1:80571310-80571329 | Msa0379440:CDS | 55.0% | |
| ATGCCACCTGTGCAATGTCC+AGG | + | chr3_1:80571316-80571335 | None:intergenic | 55.0% | |
| GGGAAAGGTTCACCTTCCGA+TGG | - | chr3_1:80571406-80571425 | Msa0379440:CDS | 55.0% | |
| TTGTGTGGAAGGAGTGGTGG+TGG | + | chr3_1:80571464-80571483 | None:intergenic | 55.0% | |
| !! | TGTGGTGGTGGTTGCAGCAG+GGG | + | chr3_1:80571434-80571453 | None:intergenic | 60.0% |
| !! | GTGTGGTGGTGGTTGCAGCA+GGG | + | chr3_1:80571435-80571454 | None:intergenic | 60.0% |
| !! | GAAGGAGTGGTGGTGGTGGA+GGG | + | chr3_1:80571457-80571476 | None:intergenic | 60.0% |
| !! | TGTGGAAGGAGTGGTGGTGG+TGG | + | chr3_1:80571461-80571480 | None:intergenic | 60.0% |
| GGACAGAGGCAGTGCTTCCA+TGG | - | chr3_1:80571594-80571613 | Msa0379440:intron | 60.0% | |
| !! | TGTGGTGGTGGTTGCAGCAG+GGG | + | chr3_1:80571434-80571453 | None:intergenic | 60.0% |
| !! | GTGTGGTGGTGGTTGCAGCA+GGG | + | chr3_1:80571435-80571454 | None:intergenic | 60.0% |
| !! | GAAGGAGTGGTGGTGGTGGA+GGG | + | chr3_1:80571457-80571476 | None:intergenic | 60.0% |
| !! | TGTGGAAGGAGTGGTGGTGG+TGG | + | chr3_1:80571461-80571480 | None:intergenic | 60.0% |
| GGACAGAGGCAGTGCTTCCA+TGG | - | chr3_1:80571594-80571613 | Msa0379440:intron | 60.0% | |
| !! | GGTTGCAGCAGGGGTGCCAT+CGG | + | chr3_1:80571425-80571444 | None:intergenic | 65.0% |
| !! | GGTGTGGTGGTGGTTGCAGC+AGG | + | chr3_1:80571436-80571455 | None:intergenic | 65.0% |
| !! | AGTGGTGGTGGTGGAGGGTG+TGG | + | chr3_1:80571452-80571471 | None:intergenic | 65.0% |
| !! | GGAAGGAGTGGTGGTGGTGG+AGG | + | chr3_1:80571458-80571477 | None:intergenic | 65.0% |
| !! | GGTTGCAGCAGGGGTGCCAT+CGG | + | chr3_1:80571425-80571444 | None:intergenic | 65.0% |
| !! | GGTGTGGTGGTGGTTGCAGC+AGG | + | chr3_1:80571436-80571455 | None:intergenic | 65.0% |
| !! | AGTGGTGGTGGTGGAGGGTG+TGG | + | chr3_1:80571452-80571471 | None:intergenic | 65.0% |
| !! | GGAAGGAGTGGTGGTGGTGG+AGG | + | chr3_1:80571458-80571477 | None:intergenic | 65.0% |
| !! | GCAGCAGGGGTGCCATCGGA+AGG | + | chr3_1:80571421-80571440 | None:intergenic | 70.0% |
| !! | GGTGGTGGAGGGTGTGGTGG+TGG | + | chr3_1:80571446-80571465 | None:intergenic | 70.0% |
| !! | GGTGGTGGTGGAGGGTGTGG+TGG | + | chr3_1:80571449-80571468 | None:intergenic | 70.0% |
| !! | GCAGCAGGGGTGCCATCGGA+AGG | + | chr3_1:80571421-80571440 | None:intergenic | 70.0% |
| !! | GGTGGTGGAGGGTGTGGTGG+TGG | + | chr3_1:80571446-80571465 | None:intergenic | 70.0% |
| !! | GGTGGTGGTGGAGGGTGTGG+TGG | + | chr3_1:80571449-80571468 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 80570649 | 80571942 | 80570649 | ID=Msa0379440;Name=Msa0379440 |
| chr3_1 | mRNA | 80570649 | 80571942 | 80570649 | ID=Msa0379440-mRNA-1;Parent=Msa0379440;Name=Msa0379440-mRNA-1;_AED=0.17;_eAED=0.17;_QI=173|1|1|1|1|1|2|372|192 |
| chr3_1 | exon | 80570649 | 80571430 | 80570649 | ID=Msa0379440-mRNA-1:exon:20142;Parent=Msa0379440-mRNA-1 |
| chr3_1 | exon | 80571601 | 80571942 | 80571601 | ID=Msa0379440-mRNA-1:exon:20141;Parent=Msa0379440-mRNA-1 |
| chr3_1 | five_prime_UTR | 80571770 | 80571942 | 80571770 | ID=Msa0379440-mRNA-1:five_prime_utr;Parent=Msa0379440-mRNA-1 |
| chr3_1 | CDS | 80571601 | 80571769 | 80571601 | ID=Msa0379440-mRNA-1:cds;Parent=Msa0379440-mRNA-1 |
| chr3_1 | CDS | 80571021 | 80571430 | 80571021 | ID=Msa0379440-mRNA-1:cds;Parent=Msa0379440-mRNA-1 |
| chr3_1 | three_prime_UTR | 80570649 | 80571020 | 80570649 | ID=Msa0379440-mRNA-1:three_prime_utr;Parent=Msa0379440-mRNA-1 |
| Gene Sequence |
| Protein sequence |
