Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1130430 | XP_013450601.1 | 97.304 | 408 | 11 | 0 | 1 | 408 | 1 | 408 | 0.0 | 821 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1130430 | sp|Q9M363|B561I_ARATH | 52.770 | 343 | 155 | 5 | 37 | 375 | 32 | 371 | 6.25e-129 | 380 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1130430 | A0A072U4F8 | 97.304 | 408 | 11 | 0 | 1 | 408 | 1 | 408 | 0.0 | 821 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0040660 | Msa1130430 | 0.819795 | 9.628445e-53 | -8.615850e-47 |
Msa0642950 | Msa1130430 | 0.882835 | 7.460897e-71 | -8.615850e-47 |
Msa0688820 | Msa1130430 | 0.828397 | 9.197389e-55 | -8.615850e-47 |
Msa0184680 | Msa1130430 | 0.800644 | 1.308326e-48 | -8.615850e-47 |
Msa0193850 | Msa1130430 | 0.830144 | 3.465095e-55 | -8.615850e-47 |
Msa0199960 | Msa1130430 | 0.851383 | 9.196654e-61 | -8.615850e-47 |
Msa0235710 | Msa1130430 | 0.830520 | 2.804422e-55 | -8.615850e-47 |
Msa0379400 | Msa1130430 | 0.816538 | 5.251449e-52 | -8.615850e-47 |
Msa0379440 | Msa1130430 | 0.837570 | 4.808732e-57 | -8.615850e-47 |
Msa0389500 | Msa1130430 | 0.801315 | 9.542641e-49 | -8.615850e-47 |
Msa0475290 | Msa1130430 | 0.859497 | 3.970822e-63 | -8.615850e-47 |
Msa1037550 | Msa1130430 | 0.951101 | 4.150803e-109 | -8.615850e-47 |
Msa1078930 | Msa1130430 | 0.828067 | 1.104660e-54 | -8.615850e-47 |
Msa0242490 | Msa1130430 | 0.855817 | 4.892079e-62 | -8.615850e-47 |
Msa0243600 | Msa1130430 | 0.822684 | 2.076598e-53 | -8.615850e-47 |
Msa0274440 | Msa1130430 | 0.853800 | 1.880633e-61 | -8.615850e-47 |
Msa0280690 | Msa1130430 | 0.857235 | 1.873847e-62 | -8.615850e-47 |
Msa0282220 | Msa1130430 | 0.840759 | 7.165937e-58 | -8.615850e-47 |
Msa0314170 | Msa1130430 | 0.863257 | 2.832092e-64 | -8.615850e-47 |
Msa0319940 | Msa1130430 | 0.824510 | 7.760839e-54 | -8.615850e-47 |
Msa0333070 | Msa1130430 | 0.804197 | 2.425384e-49 | -8.615850e-47 |
Msa1123930 | Msa1130430 | 0.845333 | 4.335056e-59 | -8.615850e-47 |
Msa1130430 | Msa1169230 | 0.822157 | 2.753320e-53 | -8.615850e-47 |
Msa1130430 | Msa1222590 | 0.859274 | 4.632548e-63 | -8.615850e-47 |
Msa1130430 | Msa1264570 | 0.856706 | 2.683741e-62 | -8.615850e-47 |
Msa1130430 | Msa1327650 | 0.818182 | 2.240296e-52 | -8.615850e-47 |
Msa1130430 | Msa1340700 | 0.844977 | 5.411569e-59 | -8.615850e-47 |
Msa1130430 | Msa1426070 | 0.830776 | 2.427069e-55 | -8.615850e-47 |
Msa1130430 | Msa1430750 | 0.861953 | 7.139853e-64 | -8.615850e-47 |
Msa1130430 | Msa1436420 | 0.845372 | 4.230727e-59 | -8.615850e-47 |
Msa1130430 | Msa1446110 | 0.921100 | 5.511551e-88 | -8.615850e-47 |
Msa0546800 | Msa1130430 | 0.806822 | 6.823909e-50 | -8.615850e-47 |
Msa0547110 | Msa1130430 | 0.815248 | 1.018909e-51 | -8.615850e-47 |
Msa0968350 | Msa1130430 | 0.833553 | 4.991211e-56 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1130430 | MtrunA17_Chr7g0275621 | 97.304 | 408 | 11 | 0 | 1 | 408 | 1 | 408 | 0.0 | 821 |
Msa1130430 | MtrunA17_Chr8g0347591 | 35.608 | 337 | 205 | 6 | 44 | 374 | 44 | 374 | 1.62e-72 | 232 |
Msa1130430 | MtrunA17_Chr8g0347581 | 35.366 | 246 | 146 | 7 | 37 | 275 | 29 | 268 | 4.43e-40 | 144 |
Msa1130430 | MtrunA17_Chr7g0234191 | 29.684 | 411 | 235 | 20 | 6 | 385 | 38 | 425 | 1.96e-32 | 127 |
Msa1130430 | MtrunA17_Chr4g0076051 | 28.571 | 308 | 187 | 10 | 101 | 385 | 87 | 384 | 1.26e-31 | 124 |
Msa1130430 | MtrunA17_Chr2g0278181 | 28.720 | 289 | 186 | 8 | 104 | 378 | 1 | 283 | 2.57e-31 | 121 |
Msa1130430 | MtrunA17_Chr5g0444651 | 27.616 | 344 | 215 | 10 | 63 | 379 | 51 | 387 | 4.60e-31 | 123 |
Msa1130430 | MtrunA17_Chr2g0290131 | 29.470 | 302 | 183 | 10 | 104 | 384 | 94 | 386 | 6.16e-29 | 116 |
Msa1130430 | MtrunA17_Chr5g0447771 | 35.593 | 177 | 106 | 4 | 218 | 386 | 247 | 423 | 6.50e-27 | 111 |
Msa1130430 | MtrunA17_Chr3g0101961 | 26.316 | 285 | 197 | 6 | 104 | 378 | 87 | 368 | 4.60e-25 | 105 |
Msa1130430 | MtrunA17_Chr8g0347601 | 32.948 | 173 | 109 | 5 | 39 | 205 | 23 | 194 | 1.33e-19 | 86.3 |
Msa1130430 | MtrunA17_Chr2g0285681 | 24.427 | 262 | 166 | 8 | 74 | 315 | 518 | 767 | 4.04e-15 | 77.4 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1130430 | AT3G61750.1 | 52.770 | 343 | 155 | 5 | 37 | 375 | 32 | 371 | 6.35e-130 | 380 |
Msa1130430 | AT3G61750.2 | 54.392 | 296 | 130 | 3 | 82 | 375 | 2 | 294 | 7.14e-115 | 338 |
Msa1130430 | AT3G07570.1 | 35.519 | 366 | 218 | 9 | 26 | 380 | 11 | 369 | 9.11e-69 | 222 |
Msa1130430 | AT5G47530.1 | 28.521 | 284 | 181 | 8 | 104 | 373 | 88 | 363 | 3.86e-31 | 123 |
Msa1130430 | AT4G12980.1 | 35.556 | 180 | 109 | 3 | 216 | 388 | 212 | 391 | 7.66e-31 | 122 |
Msa1130430 | AT3G25290.1 | 34.359 | 195 | 119 | 4 | 201 | 388 | 198 | 390 | 1.37e-30 | 121 |
Msa1130430 | AT3G25290.2 | 34.359 | 195 | 119 | 4 | 201 | 388 | 198 | 390 | 1.37e-30 | 121 |
Msa1130430 | AT5G35735.1 | 25.581 | 344 | 223 | 11 | 74 | 398 | 57 | 386 | 1.75e-27 | 113 |
Msa1130430 | AT3G59070.1 | 30.667 | 225 | 140 | 5 | 187 | 397 | 183 | 405 | 2.45e-25 | 107 |
Msa1130430 | AT4G17280.1 | 26.625 | 323 | 208 | 9 | 72 | 375 | 58 | 370 | 3.03e-25 | 106 |
Msa1130430 | AT2G04850.1 | 26.398 | 322 | 197 | 12 | 92 | 383 | 71 | 382 | 1.39e-20 | 93.2 |
Msa1130430 | AT5G54830.1 | 23.423 | 333 | 205 | 12 | 79 | 379 | 535 | 849 | 1.12e-12 | 70.5 |
Find 136 sgRNAs with CRISPR-Local
Find 217 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AAATGGGGCTGAAATTTATT+TGG | 0.168870 | 7_3:-82593199 | Msa1130430:CDS |
AGAGGATCCATTTGGAAATT+TGG | 0.184762 | 7_3:+82591627 | None:intergenic |
TGCATTTCAAGTTTGGAATT+TGG | 0.193087 | 7_3:+82594502 | None:intergenic |
ACTACCATTGTTCCTATCTT+TGG | 0.226002 | 7_3:-82594403 | Msa1130430:five_prime_UTR |
GTACTAAAAGCCAATAAAAT+TGG | 0.228379 | 7_3:+82593138 | None:intergenic |
CGAAACTTGGAATCCCTATT+TGG | 0.245262 | 7_3:+82591855 | None:intergenic |
AGAAAGAATCATGGAATAAT+TGG | 0.246187 | 7_3:-82592330 | Msa1130430:CDS |
AGTTATCGTTCTCGAAATAT+TGG | 0.252993 | 7_3:-82591685 | Msa1130430:CDS |
TGCAGCCTTGAACATAGTTT+TGG | 0.253562 | 7_3:-82591781 | Msa1130430:CDS |
CATTCTTCTTGAGACCAAAT+AGG | 0.267115 | 7_3:-82591869 | Msa1130430:CDS |
GGACTTGCTACTGTCCTTCT+TGG | 0.268455 | 7_3:-82592189 | Msa1130430:CDS |
CATGGAATAATTGGTATTAT+AGG | 0.273911 | 7_3:-82592321 | Msa1130430:CDS |
AAATCAAGCAATATTATCTA+AGG | 0.278902 | 7_3:-82593296 | Msa1130430:CDS |
CATTCAATCATTCAATTTGT+TGG | 0.280269 | 7_3:-82592222 | Msa1130430:CDS |
AGTCTCTTGCATTTCAAGTT+TGG | 0.289905 | 7_3:+82594495 | None:intergenic |
TGCCAAACGGGTTTGCATAT+TGG | 0.291944 | 7_3:+82594178 | None:intergenic |
GTCCTTCTTGGCAAACTTCT+AGG | 0.297800 | 7_3:+82591420 | None:intergenic |
AATGGCAAAGCTAAGATCTT+TGG | 0.310082 | 7_3:-82594359 | Msa1130430:CDS |
CCTGCTGCTGTGGCAACAAA+TGG | 0.314910 | 7_3:-82593216 | Msa1130430:CDS |
CCTTGTGCTAAGTATTCTTC+AGG | 0.315018 | 7_3:-82592103 | Msa1130430:intron |
CAATTTGTTGGATTTGCATT+TGG | 0.319893 | 7_3:-82592210 | Msa1130430:CDS |
AAAGTTAGGATTGTCCTTCT+TGG | 0.329171 | 7_3:+82591408 | None:intergenic |
CCCTACACAGTTGGGTGGGT+GGG | 0.331717 | 7_3:-82593396 | Msa1130430:CDS |
CTTCAAACAACAATTCCATT+TGG | 0.339138 | 7_3:-82593168 | Msa1130430:CDS |
CTGCTGCTGTGGCAACAAAT+GGG | 0.354136 | 7_3:-82593215 | Msa1130430:CDS |
CCACAGTTGGTTTGGAAGAA+TGG | 0.354486 | 7_3:-82591814 | Msa1130430:CDS |
ATGGAATAATTGGTATTATA+GGG | 0.356476 | 7_3:-82592320 | Msa1130430:CDS |
ACAGTTGGGTGGGTGGGGAT+TGG | 0.365724 | 7_3:-82593390 | Msa1130430:CDS |
AAATGTGTATGCCTCTTAAC+TGG | 0.366457 | 7_3:+82591090 | None:intergenic |
AAGATTTAAATCCAGTTAAG+AGG | 0.367391 | 7_3:-82591101 | Msa1130430:three_prime_UTR |
AACTTCAATACCATTGCATT+AGG | 0.373456 | 7_3:-82594286 | Msa1130430:CDS |
CTGGTATGTGGACATGCATT+TGG | 0.374194 | 7_3:+82592151 | None:intergenic |
CTCTCAACTGTCTTGTTGTT+AGG | 0.381805 | 7_3:-82594467 | Msa1130430:five_prime_UTR |
ATTCTTCTTGAGACCAAATA+GGG | 0.382671 | 7_3:-82591868 | Msa1130430:CDS |
GCAGCAGGCACGTTATTTAG+AGG | 0.384723 | 7_3:+82593231 | None:intergenic |
CTTCTCCAAGAGGATCCATT+TGG | 0.387230 | 7_3:+82591619 | None:intergenic |
TTGAAATTTAAGAATCAGAT+TGG | 0.395957 | 7_3:-82591239 | Msa1130430:three_prime_UTR |
AGTTTCTGCTGCTGCTTGAT+CGG | 0.396757 | 7_3:-82591331 | Msa1130430:three_prime_UTR |
CATTCCCAAAACTATGTTCA+AGG | 0.410754 | 7_3:+82591776 | None:intergenic |
CATGCGAGGAAGCCAAAGTT+AGG | 0.413562 | 7_3:+82591394 | None:intergenic |
ATACCAGCTCACAGAGGAAT+TGG | 0.414517 | 7_3:-82592135 | Msa1130430:CDS |
AAAATTGGTTGCTTTCCAAA+TGG | 0.417606 | 7_3:+82593153 | None:intergenic |
CCTACACAGTTGGGTGGGTG+GGG | 0.424223 | 7_3:-82593395 | Msa1130430:CDS |
AATTCATATGTATGCCAAAC+GGG | 0.434998 | 7_3:+82594166 | None:intergenic |
GTTTCTGCTGCTGCTTGATC+GGG | 0.435140 | 7_3:-82591330 | Msa1130430:three_prime_UTR |
ACAAGCTATGGATTCCTTGT+TGG | 0.442212 | 7_3:-82591723 | Msa1130430:CDS |
CTCCAATATGCAAACCCGTT+TGG | 0.444241 | 7_3:-82594180 | Msa1130430:CDS |
CCATTTGTTGCCACAGCAGC+AGG | 0.445115 | 7_3:+82593216 | None:intergenic |
AATTTGTACCACAGTTGGTT+TGG | 0.448506 | 7_3:-82591822 | Msa1130430:CDS |
CCAAGAAATATTCAAACAAA+AGG | 0.450332 | 7_3:-82591588 | Msa1130430:intron |
CCTTCCACCAAATTTCCAAA+TGG | 0.454867 | 7_3:-82591634 | Msa1130430:CDS |
TGCGAGGTACTTCAAACATA+AGG | 0.459343 | 7_3:-82592265 | Msa1130430:CDS |
AAATATTGGCATATTTAAAA+CGG | 0.460423 | 7_3:-82591671 | Msa1130430:CDS |
ATCTTTGGATCACACTGATC+TGG | 0.464570 | 7_3:-82594388 | Msa1130430:five_prime_UTR |
TGGTATGTGGACATGCATTT+GGG | 0.466439 | 7_3:+82592152 | None:intergenic |
CAGCAGGAGCAACGAATGCT+TGG | 0.473840 | 7_3:-82591749 | Msa1130430:CDS |
AAGAAGGACAATCCTAACTT+TGG | 0.474137 | 7_3:-82591406 | Msa1130430:three_prime_UTR |
TCTCATTTGAATCAAACCAT+TGG | 0.474801 | 7_3:+82592350 | None:intergenic |
TACCTAGAAGTTTGCCAAGA+AGG | 0.479211 | 7_3:-82591422 | Msa1130430:three_prime_UTR |
GATCAGTGTGATCCAAAGAT+AGG | 0.481592 | 7_3:+82594391 | None:intergenic |
CCATTTGGAAATTTGGTGGA+AGG | 0.482086 | 7_3:+82591634 | None:intergenic |
TGAATCAAACCATTGGATGC+TGG | 0.484210 | 7_3:+82592357 | None:intergenic |
ATTCAAATGAGAAAGAATCA+TGG | 0.487178 | 7_3:-82592339 | Msa1130430:CDS |
AATTTCCAAATGGATCCTCT+TGG | 0.487835 | 7_3:-82591624 | Msa1130430:CDS |
TCAAACATAAGGAACCCCTT+TGG | 0.493885 | 7_3:-82592254 | Msa1130430:CDS |
TGTCATCATGCTTTGACAGA+TGG | 0.495892 | 7_3:+82593097 | None:intergenic |
ACCCTACACAGTTGGGTGGG+TGG | 0.496193 | 7_3:-82593397 | Msa1130430:CDS |
TATATCTACATCATTCGATA+AGG | 0.496508 | 7_3:+82591451 | None:intergenic |
GCAAAATTTCTACAACATGT+AGG | 0.500492 | 7_3:-82591127 | Msa1130430:three_prime_UTR |
TTGGCATACATATGAATTGA+GGG | 0.509114 | 7_3:-82594161 | Msa1130430:intron |
CATTTGGAAATTTGGTGGAA+GGG | 0.509644 | 7_3:+82591635 | None:intergenic |
GGATCCATTTGGAAATTTGG+TGG | 0.510637 | 7_3:+82591630 | None:intergenic |
CCCACCCACCCAACTGTGTA+GGG | 0.511172 | 7_3:+82593396 | None:intergenic |
ATGCATATCCTAACAAAAGA+TGG | 0.513584 | 7_3:+82594325 | None:intergenic |
TGTGGAATTTGTACCACAGT+TGG | 0.515734 | 7_3:-82591827 | Msa1130430:CDS |
TGCTGCTGTGGCAACAAATG+GGG | 0.517059 | 7_3:-82593214 | Msa1130430:CDS |
CTCGCAACAATTGCACCTAC+TGG | 0.521608 | 7_3:+82592282 | None:intergenic |
ATTTCAAGTTTGGAATTTGG+TGG | 0.522605 | 7_3:+82594505 | None:intergenic |
AATCAAGCAATATTATCTAA+GGG | 0.526965 | 7_3:-82593295 | Msa1130430:CDS |
TGATCAAAAGAGCATATTCA+CGG | 0.529334 | 7_3:-82591201 | Msa1130430:three_prime_UTR |
GGTCGGTTCAAGTGCAATGG+TGG | 0.531243 | 7_3:-82593346 | Msa1130430:CDS |
GATATGTTCTGATAAGGTGG+AGG | 0.531436 | 7_3:+82594205 | None:intergenic |
GATGATATGTTCTGATAAGG+TGG | 0.532974 | 7_3:+82594202 | None:intergenic |
CAATTCATATGTATGCCAAA+CGG | 0.533146 | 7_3:+82594165 | None:intergenic |
TATCTGCACCCTACACAGTT+GGG | 0.533408 | 7_3:-82593404 | Msa1130430:CDS |
ATTCCAAGTTTCGCAAAATG+TGG | 0.534133 | 7_3:-82591845 | Msa1130430:CDS |
ATAATTGGTATTATAGGGTG+GGG | 0.536263 | 7_3:-82592315 | Msa1130430:CDS |
GGAGATGATATGTTCTGATA+AGG | 0.538172 | 7_3:+82594199 | None:intergenic |
TAAGATCTTTGGTTCAGCTA+TGG | 0.539939 | 7_3:-82594348 | Msa1130430:CDS |
TTCCTCTGTGAGCTGGTATG+TGG | 0.543323 | 7_3:+82592139 | None:intergenic |
ACACTGATCTGGTCTATGAA+TGG | 0.544015 | 7_3:-82594377 | Msa1130430:exon |
CTGCACCCTACACAGTTGGG+TGG | 0.544650 | 7_3:-82593401 | Msa1130430:CDS |
ATGCCAATTCCTCTGTGAGC+TGG | 0.546668 | 7_3:+82592132 | None:intergenic |
AATAATTGGTATTATAGGGT+GGG | 0.550790 | 7_3:-82592316 | Msa1130430:CDS |
AATGCTTGGAAGACAAGCTA+TGG | 0.552134 | 7_3:-82591735 | Msa1130430:CDS |
TTATCTGCACCCTACACAGT+TGG | 0.554095 | 7_3:-82593405 | Msa1130430:CDS |
GAATAATTGGTATTATAGGG+TGG | 0.554975 | 7_3:-82592317 | Msa1130430:CDS |
TTTGGCATACATATGAATTG+AGG | 0.559705 | 7_3:-82594162 | Msa1130430:CDS |
ATGGTGTTCATGTGGATGCT+TGG | 0.562567 | 7_3:+82593116 | None:intergenic |
TGTTCTGATAAGGTGGAGGG+AGG | 0.564304 | 7_3:+82594209 | None:intergenic |
GATCAAAAGAGCATATTCAC+GGG | 0.566726 | 7_3:-82591200 | Msa1130430:three_prime_UTR |
TTGAATGTAGATAGAACCAA+AGG | 0.567909 | 7_3:+82592238 | None:intergenic |
AAATAACGTGCCTGCTGCTG+TGG | 0.575038 | 7_3:-82593226 | Msa1130430:CDS |
GTTCAAGTGCAATGGTGGGA+TGG | 0.583060 | 7_3:-82593341 | Msa1130430:CDS |
TGCACCCTACACAGTTGGGT+GGG | 0.592706 | 7_3:-82593400 | Msa1130430:CDS |
TGAATGTAGATAGAACCAAA+GGG | 0.600269 | 7_3:+82592239 | None:intergenic |
AGTAGAGTTGTAATCCAAGA+AGG | 0.601579 | 7_3:+82592175 | None:intergenic |
GGAAAGATTTCTTCTCCAAG+AGG | 0.601984 | 7_3:+82591609 | None:intergenic |
TCTATGGATCCAGCATCCAA+TGG | 0.602260 | 7_3:-82592366 | Msa1130430:CDS |
CCCCACCCACCCAACTGTGT+AGG | 0.602301 | 7_3:+82593395 | None:intergenic |
ATATGTTCTGATAAGGTGGA+GGG | 0.605129 | 7_3:+82594206 | None:intergenic |
CACGAGGAGTCTAACTGAAG+AGG | 0.608139 | 7_3:-82591149 | Msa1130430:three_prime_UTR |
ATCAAGCAATATTATCTAAG+GGG | 0.611248 | 7_3:-82593294 | Msa1130430:CDS |
TTCAATCTCAAGTTCATGCG+AGG | 0.613465 | 7_3:+82591380 | None:intergenic |
CCTGAAGAATACTTAGCACA+AGG | 0.616760 | 7_3:+82592103 | None:intergenic |
ACAAAACTCAAGAATAAGAG+AGG | 0.617617 | 7_3:+82594427 | None:intergenic |
TCAGAAGTCATTGCAAACAA+AGG | 0.618190 | 7_3:-82593261 | Msa1130430:CDS |
CAACAATTGCACCTACTGGT+AGG | 0.621409 | 7_3:+82592286 | None:intergenic |
AATGGTCGGTTCAAGTGCAA+TGG | 0.628638 | 7_3:-82593349 | Msa1130430:CDS |
TGATCCAAAGATAGGAACAA+TGG | 0.629638 | 7_3:+82594399 | None:intergenic |
AGGAGATGACACAACATCGT+CGG | 0.644400 | 7_3:-82594266 | Msa1130430:CDS |
TGCAGATAATATGATTGTTG+TGG | 0.646735 | 7_3:+82593419 | None:intergenic |
CATCGTCGGAAAGTACATGC+AGG | 0.648599 | 7_3:-82594252 | Msa1130430:CDS |
CCATTCTTCCAAACCAACTG+TGG | 0.660006 | 7_3:+82591814 | None:intergenic |
GTCGGTTCAAGTGCAATGGT+GGG | 0.660569 | 7_3:-82593345 | Msa1130430:CDS |
TGGGGATTAATCCTACCAGT+AGG | 0.662402 | 7_3:-82592297 | Msa1130430:CDS |
ATAATGCAGGGTGAATGTGT+TGG | 0.669771 | 7_3:-82591503 | Msa1130430:intron |
TGTGTCATCTCCTAATGCAA+TGG | 0.677178 | 7_3:+82594276 | None:intergenic |
CAGTAGGTGCAATTGTTGCG+AGG | 0.680721 | 7_3:-82592281 | Msa1130430:CDS |
TTTGACAGATGGTGTTCATG+TGG | 0.686431 | 7_3:+82593108 | None:intergenic |
GAATGTAGATAGAACCAAAG+GGG | 0.711232 | 7_3:+82592240 | None:intergenic |
CTAACAACAAGACAGTTGAG+AGG | 0.723501 | 7_3:+82594468 | None:intergenic |
GTGGGATGGATTAATAAACG+TGG | 0.733010 | 7_3:-82593327 | Msa1130430:CDS |
TAACAATTATAATACCAACA+AGG | 0.736320 | 7_3:+82591709 | None:intergenic |
ATGTTATTCTATGAAGCACG+AGG | 0.740815 | 7_3:-82591165 | Msa1130430:three_prime_UTR |
GTCCACATACCAGCTCACAG+AGG | 0.789985 | 7_3:-82592141 | Msa1130430:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | AATAATAAATCTTTAATTTC+TGG | + | chr7_3:82592063-82592082 | None:intergenic | 10.0% |
!!! | TCAATTTTAAATCAAAATAA+TGG | + | chr7_3:82593108-82593127 | None:intergenic | 10.0% |
!!! | TCTTTTATAACTTTGTTATT+AGG | - | chr7_3:82591716-82591735 | Msa1130430:CDS | 15.0% |
!!! | ATTATATTTGATTTTTCTTC+AGG | - | chr7_3:82592483-82592502 | Msa1130430:intron | 15.0% |
!! | AATTAAAGTTAGCAATAATT+TGG | + | chr7_3:82592572-82592591 | None:intergenic | 15.0% |
!! | ATTCTTTGTTAATGTTAAAA+GGG | + | chr7_3:82592716-82592735 | None:intergenic | 15.0% |
!! | TATTCTTTGTTAATGTTAAA+AGG | + | chr7_3:82592717-82592736 | None:intergenic | 15.0% |
!! | AAAGAATAATATCATTTCAA+TGG | - | chr7_3:82592729-82592748 | Msa1130430:intron | 15.0% |
!! | AAATATTGGCATATTTAAAA+CGG | - | chr7_3:82593878-82593897 | Msa1130430:intron | 15.0% |
!! | ATCAAACATAATAAGTGAAA+TGG | + | chr7_3:82591480-82591499 | None:intergenic | 20.0% |
!! | ATCAATGATAGATATTACTT+TGG | + | chr7_3:82591591-82591610 | None:intergenic | 20.0% |
!! | AAATCAAGCAATATTATCTA+AGG | - | chr7_3:82592253-82592272 | Msa1130430:CDS | 20.0% |
!! | AATCAAGCAATATTATCTAA+GGG | - | chr7_3:82592254-82592273 | Msa1130430:CDS | 20.0% |
!! | TTCTTTGTTAATGTTAAAAG+GGG | + | chr7_3:82592715-82592734 | None:intergenic | 20.0% |
!! | ATCACAAAAATTAAGAAAGT+TGG | - | chr7_3:82592803-82592822 | Msa1130430:intron | 20.0% |
!! | TGCAAACATAAACTAATTAT+CGG | + | chr7_3:82592875-82592894 | None:intergenic | 20.0% |
!! | ATGGAATAATTGGTATTATA+GGG | - | chr7_3:82593229-82593248 | Msa1130430:CDS | 20.0% |
!! | TCGCAAAAGTTATTTAAATT+TGG | - | chr7_3:82593587-82593606 | Msa1130430:intron | 20.0% |
!! | TAACAATTATAATACCAACA+AGG | + | chr7_3:82593843-82593862 | None:intergenic | 20.0% |
!! | ACAAAACAACTTAAAAAACA+AGG | + | chr7_3:82593997-82594016 | None:intergenic | 20.0% |
!!! | TTTTATACAAGTACAAAACT+AGG | + | chr7_3:82594074-82594093 | None:intergenic | 20.0% |
!! | TTGAAATTTAAGAATCAGAT+TGG | - | chr7_3:82594310-82594329 | Msa1130430:CDS | 20.0% |
!!! | TGTTTGATTGTTGTTTAGAA+TGG | - | chr7_3:82591492-82591511 | Msa1130430:three_prime_UTR | 25.0% |
! | ATAGATATTACTTTGGACTT+TGG | + | chr7_3:82591584-82591603 | None:intergenic | 25.0% |
! | TGATGTGATGAATAAATGAA+TGG | - | chr7_3:82591607-82591626 | Msa1130430:CDS | 25.0% |
! | TTTCAACGAACTTATGAATT+AGG | + | chr7_3:82591651-82591670 | None:intergenic | 25.0% |
!! | TTCGTTGAAATAACAACTTT+TGG | - | chr7_3:82591661-82591680 | Msa1130430:CDS | 25.0% |
!! | GCTTTAAGTTATAAAACTCA+TGG | + | chr7_3:82591751-82591770 | None:intergenic | 25.0% |
!!! | TATTTTGATCTGATTGGAAT+TGG | + | chr7_3:82591928-82591947 | None:intergenic | 25.0% |
!!! | CAACATTATTTTGATCTGAT+TGG | + | chr7_3:82591934-82591953 | None:intergenic | 25.0% |
! | CAATCAGATCAAAATAATGT+TGG | - | chr7_3:82591932-82591951 | Msa1130430:intron | 25.0% |
!!! | ATTTTCTAGAGATGGAAAAA+TGG | - | chr7_3:82592182-82592201 | Msa1130430:CDS | 25.0% |
! | ATCAAGCAATATTATCTAAG+GGG | - | chr7_3:82592255-82592274 | Msa1130430:CDS | 25.0% |
! | GTACTAAAAGCCAATAAAAT+TGG | + | chr7_3:82592414-82592433 | None:intergenic | 25.0% |
! | CAAACATAAACTAATTATCG+GGG | + | chr7_3:82592873-82592892 | None:intergenic | 25.0% |
! | GCAAACATAAACTAATTATC+GGG | + | chr7_3:82592874-82592893 | None:intergenic | 25.0% |
!! | TTGAAAGGAGTCTTATATAA+AGG | - | chr7_3:82592972-82592991 | Msa1130430:intron | 25.0% |
! | GATTAATTTCAACTGAATCT+TGG | - | chr7_3:82593016-82593035 | Msa1130430:intron | 25.0% |
! | ATTCAAATGAGAAAGAATCA+TGG | - | chr7_3:82593210-82593229 | Msa1130430:CDS | 25.0% |
! | AGAAAGAATCATGGAATAAT+TGG | - | chr7_3:82593219-82593238 | Msa1130430:CDS | 25.0% |
! | CATGGAATAATTGGTATTAT+AGG | - | chr7_3:82593228-82593247 | Msa1130430:CDS | 25.0% |
! | AATAATTGGTATTATAGGGT+GGG | - | chr7_3:82593233-82593252 | Msa1130430:CDS | 25.0% |
! | CATTCAATCATTCAATTTGT+TGG | - | chr7_3:82593327-82593346 | Msa1130430:CDS | 25.0% |
! | ATTATTATAACATGAGTCAG+TGG | + | chr7_3:82593476-82593495 | None:intergenic | 25.0% |
!!! | CCTTTTGTTTGAATATTTCT+TGG | + | chr7_3:82593964-82593983 | None:intergenic | 25.0% |
! | CCAAGAAATATTCAAACAAA+AGG | - | chr7_3:82593961-82593980 | Msa1130430:intron | 25.0% |
!!! | TAATACAATCTTGATAATGC+AGG | - | chr7_3:82594033-82594052 | Msa1130430:intron | 25.0% |
!!! | AATACAATCTTGATAATGCA+GGG | - | chr7_3:82594034-82594053 | Msa1130430:intron | 25.0% |
! | TATATCTACATCATTCGATA+AGG | + | chr7_3:82594101-82594120 | None:intergenic | 25.0% |
! | AAGATTTAAATCCAGTTAAG+AGG | - | chr7_3:82594448-82594467 | Msa1130430:five_prime_UTR | 25.0% |
!! | ATTTCAAGTTTGGAATTTGG+TGG | + | chr7_3:82591047-82591066 | None:intergenic | 30.0% |
!! | TGCATTTCAAGTTTGGAATT+TGG | + | chr7_3:82591050-82591069 | None:intergenic | 30.0% |
ACAAAACTCAAGAATAAGAG+AGG | + | chr7_3:82591125-82591144 | None:intergenic | 30.0% | |
ATGCATATCCTAACAAAAGA+TGG | + | chr7_3:82591227-82591246 | None:intergenic | 30.0% | |
AACTTCAATACCATTGCATT+AGG | - | chr7_3:82591263-82591282 | Msa1130430:three_prime_UTR | 30.0% | |
AATTCATATGTATGCCAAAC+GGG | + | chr7_3:82591386-82591405 | None:intergenic | 30.0% | |
CAATTCATATGTATGCCAAA+CGG | + | chr7_3:82591387-82591406 | None:intergenic | 30.0% | |
TTTGGCATACATATGAATTG+AGG | - | chr7_3:82591387-82591406 | Msa1130430:three_prime_UTR | 30.0% | |
TTGGCATACATATGAATTGA+GGG | - | chr7_3:82591388-82591407 | Msa1130430:three_prime_UTR | 30.0% | |
GAATTCTAATTCCTCATTGT+TGG | - | chr7_3:82591429-82591448 | Msa1130430:three_prime_UTR | 30.0% | |
!!! | TTAGAATGGACTCGTTTTTT+TGG | - | chr7_3:82591506-82591525 | Msa1130430:intron | 30.0% |
TGAATGGAAAAAATGTGGTT+GGG | + | chr7_3:82591867-82591886 | None:intergenic | 30.0% | |
!!! | TTCTGGCTAGATTTTAGAAT+TGG | + | chr7_3:82592046-82592065 | None:intergenic | 30.0% |
TGCAGATAATATGATTGTTG+TGG | + | chr7_3:82592133-82592152 | None:intergenic | 30.0% | |
AAATGGGGCTGAAATTTATT+TGG | - | chr7_3:82592350-82592369 | Msa1130430:CDS | 30.0% | |
CTTCAAACAACAATTCCATT+TGG | - | chr7_3:82592381-82592400 | Msa1130430:intron | 30.0% | |
! | AAAATTGGTTGCTTTCCAAA+TGG | + | chr7_3:82592399-82592418 | None:intergenic | 30.0% |
! | TGGAAAGCAACCAATTTTAT+TGG | - | chr7_3:82592401-82592420 | Msa1130430:intron | 30.0% |
ACGATCATACTAGTAAATTG+TGG | + | chr7_3:82592756-82592775 | None:intergenic | 30.0% | |
! | TCAACGAGATCTTATGTTTT+GGG | + | chr7_3:82592779-82592798 | None:intergenic | 30.0% |
TAATGCAGCTGAAATTTGAA+AGG | - | chr7_3:82592957-82592976 | Msa1130430:intron | 30.0% | |
! | TTGAAAATTATCCCTTTTGC+AGG | - | chr7_3:82593159-82593178 | Msa1130430:CDS | 30.0% |
TCTCATTTGAATCAAACCAT+TGG | + | chr7_3:82593202-82593221 | None:intergenic | 30.0% | |
GAATAATTGGTATTATAGGG+TGG | - | chr7_3:82593232-82593251 | Msa1130430:CDS | 30.0% | |
ATAATTGGTATTATAGGGTG+GGG | - | chr7_3:82593234-82593253 | Msa1130430:CDS | 30.0% | |
TGAATGTAGATAGAACCAAA+GGG | + | chr7_3:82593313-82593332 | None:intergenic | 30.0% | |
TTGAATGTAGATAGAACCAA+AGG | + | chr7_3:82593314-82593333 | None:intergenic | 30.0% | |
!! | CAATTTGTTGGATTTGCATT+TGG | - | chr7_3:82593339-82593358 | Msa1130430:CDS | 30.0% |
AACCATGTATGTTCAGATAT+TGG | - | chr7_3:82593657-82593676 | Msa1130430:intron | 30.0% | |
ATTCTTCTTGAGACCAAATA+GGG | - | chr7_3:82593681-82593700 | Msa1130430:intron | 30.0% | |
AGTTATCGTTCTCGAAATAT+TGG | - | chr7_3:82593864-82593883 | Msa1130430:intron | 30.0% | |
! | TGATCAAAAGAGCATATTCA+CGG | - | chr7_3:82594348-82594367 | Msa1130430:CDS | 30.0% |
GCAAAATTTCTACAACATGT+AGG | - | chr7_3:82594422-82594441 | Msa1130430:five_prime_UTR | 30.0% | |
!! | AGTCTCTTGCATTTCAAGTT+TGG | + | chr7_3:82591057-82591076 | None:intergenic | 35.0% |
ACTACCATTGTTCCTATCTT+TGG | - | chr7_3:82591146-82591165 | Msa1130430:three_prime_UTR | 35.0% | |
TGATCCAAAGATAGGAACAA+TGG | + | chr7_3:82591153-82591172 | None:intergenic | 35.0% | |
AATGGCAAAGCTAAGATCTT+TGG | - | chr7_3:82591190-82591209 | Msa1130430:three_prime_UTR | 35.0% | |
! | TAAGATCTTTGGTTCAGCTA+TGG | - | chr7_3:82591201-82591220 | Msa1130430:three_prime_UTR | 35.0% |
ATATGTTCTGATAAGGTGGA+GGG | + | chr7_3:82591346-82591365 | None:intergenic | 35.0% | |
GATGATATGTTCTGATAAGG+TGG | + | chr7_3:82591350-82591369 | None:intergenic | 35.0% | |
GGAGATGATATGTTCTGATA+AGG | + | chr7_3:82591353-82591372 | None:intergenic | 35.0% | |
TAGAAGTAGAACCAACAATG+AGG | + | chr7_3:82591443-82591462 | None:intergenic | 35.0% | |
GTGAATGGAAAAAATGTGGT+TGG | + | chr7_3:82591868-82591887 | None:intergenic | 35.0% | |
CCTTGTGAATGGAAAAAATG+TGG | + | chr7_3:82591872-82591891 | None:intergenic | 35.0% | |
!!! | CCACATTTTTTCCATTCACA+AGG | - | chr7_3:82591869-82591888 | Msa1130430:CDS | 35.0% |
TCTAGAGATGGAAAAATGGT+CGG | - | chr7_3:82592186-82592205 | Msa1130430:CDS | 35.0% | |
TCAGAAGTCATTGCAAACAA+AGG | - | chr7_3:82592288-82592307 | Msa1130430:CDS | 35.0% | |
! | TTTTCTTCAGGTGCAAAATC+AGG | - | chr7_3:82592495-82592514 | Msa1130430:intron | 35.0% |
!!! | GTTTTTTTTTTCCTTCGCCT+CGG | - | chr7_3:82592651-82592670 | Msa1130430:intron | 35.0% |
! | GTTAATGTTAAAAGGGGTGT+TGG | + | chr7_3:82592709-82592728 | None:intergenic | 35.0% |
! | GTCAACGAGATCTTATGTTT+TGG | + | chr7_3:82592780-82592799 | None:intergenic | 35.0% |
!! | AGCAGAGAGCTTTTTATTTG+AGG | - | chr7_3:82593064-82593083 | Msa1130430:CDS | 35.0% |
!! | GCAGAGAGCTTTTTATTTGA+GGG | - | chr7_3:82593065-82593084 | Msa1130430:CDS | 35.0% |
GAATGTAGATAGAACCAAAG+GGG | + | chr7_3:82593312-82593331 | None:intergenic | 35.0% | |
AGTAGAGTTGTAATCCAAGA+AGG | + | chr7_3:82593377-82593396 | None:intergenic | 35.0% | |
TGCCAATATCTGAACATACA+TGG | + | chr7_3:82593662-82593681 | None:intergenic | 35.0% | |
CATTCTTCTTGAGACCAAAT+AGG | - | chr7_3:82593680-82593699 | Msa1130430:intron | 35.0% | |
ATTCCAAGTTTCGCAAAATG+TGG | - | chr7_3:82593704-82593723 | Msa1130430:intron | 35.0% | |
! | ATTCCACATTTTGCGAAACT+TGG | + | chr7_3:82593710-82593729 | None:intergenic | 35.0% |
AATTTGTACCACAGTTGGTT+TGG | - | chr7_3:82593727-82593746 | Msa1130430:intron | 35.0% | |
CATTCCCAAAACTATGTTCA+AGG | + | chr7_3:82593776-82593795 | None:intergenic | 35.0% | |
! | CATTTGGAAATTTGGTGGAA+GGG | + | chr7_3:82593917-82593936 | None:intergenic | 35.0% |
AGAGGATCCATTTGGAAATT+TGG | + | chr7_3:82593925-82593944 | None:intergenic | 35.0% | |
AATTTCCAAATGGATCCTCT+TGG | - | chr7_3:82593925-82593944 | Msa1130430:intron | 35.0% | |
AAAGTTAGGATTGTCCTTCT+TGG | + | chr7_3:82594144-82594163 | None:intergenic | 35.0% | |
AAGAAGGACAATCCTAACTT+TGG | - | chr7_3:82594143-82594162 | Msa1130430:intron | 35.0% | |
! | GATCAAAAGAGCATATTCAC+GGG | - | chr7_3:82594349-82594368 | Msa1130430:CDS | 35.0% |
ATGTTATTCTATGAAGCACG+AGG | - | chr7_3:82594384-82594403 | Msa1130430:five_prime_UTR | 35.0% | |
AAATGTGTATGCCTCTTAAC+TGG | + | chr7_3:82594462-82594481 | None:intergenic | 35.0% | |
CTAACAACAAGACAGTTGAG+AGG | + | chr7_3:82591084-82591103 | None:intergenic | 40.0% | |
!! | CTCTCAACTGTCTTGTTGTT+AGG | - | chr7_3:82591082-82591101 | Msa1130430:three_prime_UTR | 40.0% |
GATCAGTGTGATCCAAAGAT+AGG | + | chr7_3:82591161-82591180 | None:intergenic | 40.0% | |
ATCTTTGGATCACACTGATC+TGG | - | chr7_3:82591161-82591180 | Msa1130430:three_prime_UTR | 40.0% | |
ACACTGATCTGGTCTATGAA+TGG | - | chr7_3:82591172-82591191 | Msa1130430:three_prime_UTR | 40.0% | |
! | AGCTATGGCCATCTTTTGTT+AGG | - | chr7_3:82591216-82591235 | Msa1130430:three_prime_UTR | 40.0% |
TGTGTCATCTCCTAATGCAA+TGG | + | chr7_3:82591276-82591295 | None:intergenic | 40.0% | |
GATATGTTCTGATAAGGTGG+AGG | + | chr7_3:82591347-82591366 | None:intergenic | 40.0% | |
TGGAAAAAATGTGGTTGGGA+TGG | + | chr7_3:82591863-82591882 | None:intergenic | 40.0% | |
GATCTGATTGGAATTGGACT+CGG | + | chr7_3:82591922-82591941 | None:intergenic | 40.0% | |
!! | GGGATTGGATTTTCTAGAGA+TGG | - | chr7_3:82592174-82592193 | Msa1130430:CDS | 40.0% |
!! | GTGGGATGGATTAATAAACG+TGG | - | chr7_3:82592222-82592241 | Msa1130430:CDS | 40.0% |
TTTGACAGATGGTGTTCATG+TGG | + | chr7_3:82592444-82592463 | None:intergenic | 40.0% | |
TGTCATCATGCTTTGACAGA+TGG | + | chr7_3:82592455-82592474 | None:intergenic | 40.0% | |
TTGGATAGCTCAAGAGTTAG+AGG | + | chr7_3:82592690-82592709 | None:intergenic | 40.0% | |
! | TATCCCTTTTGCAGGTTCTA+TGG | - | chr7_3:82593167-82593186 | Msa1130430:CDS | 40.0% |
GATCCATAGAACCTGCAAAA+GGG | + | chr7_3:82593173-82593192 | None:intergenic | 40.0% | |
TGAATCAAACCATTGGATGC+TGG | + | chr7_3:82593195-82593214 | None:intergenic | 40.0% | |
! | TGCGAGGTACTTCAAACATA+AGG | - | chr7_3:82593284-82593303 | Msa1130430:CDS | 40.0% |
TCAAACATAAGGAACCCCTT+TGG | - | chr7_3:82593295-82593314 | Msa1130430:CDS | 40.0% | |
TGGTATGTGGACATGCATTT+GGG | + | chr7_3:82593400-82593419 | None:intergenic | 40.0% | |
CCTGAAGAATACTTAGCACA+AGG | + | chr7_3:82593449-82593468 | None:intergenic | 40.0% | |
CCTTGTGCTAAGTATTCTTC+AGG | - | chr7_3:82593446-82593465 | Msa1130430:intron | 40.0% | |
CGAAACTTGGAATCCCTATT+TGG | + | chr7_3:82593697-82593716 | None:intergenic | 40.0% | |
TGTGGAATTTGTACCACAGT+TGG | - | chr7_3:82593722-82593741 | Msa1130430:intron | 40.0% | |
! | TGCAGCCTTGAACATAGTTT+TGG | - | chr7_3:82593768-82593787 | Msa1130430:intron | 40.0% |
! | GCAGCCTTGAACATAGTTTT+GGG | - | chr7_3:82593769-82593788 | Msa1130430:intron | 40.0% |
AATGCTTGGAAGACAAGCTA+TGG | - | chr7_3:82593814-82593833 | Msa1130430:intron | 40.0% | |
ACAAGCTATGGATTCCTTGT+TGG | - | chr7_3:82593826-82593845 | Msa1130430:intron | 40.0% | |
! | CCATTTGGAAATTTGGTGGA+AGG | + | chr7_3:82593918-82593937 | None:intergenic | 40.0% |
CCTTCCACCAAATTTCCAAA+TGG | - | chr7_3:82593915-82593934 | Msa1130430:intron | 40.0% | |
GGATCCATTTGGAAATTTGG+TGG | + | chr7_3:82593922-82593941 | None:intergenic | 40.0% | |
GGAAAGATTTCTTCTCCAAG+AGG | + | chr7_3:82593943-82593962 | None:intergenic | 40.0% | |
ATAATGCAGGGTGAATGTGT+TGG | - | chr7_3:82594046-82594065 | Msa1130430:intron | 40.0% | |
TACCTAGAAGTTTGCCAAGA+AGG | - | chr7_3:82594127-82594146 | Msa1130430:intron | 40.0% | |
TTCAATCTCAAGTTCATGCG+AGG | + | chr7_3:82594172-82594191 | None:intergenic | 40.0% | |
AGGAGATGACACAACATCGT+CGG | - | chr7_3:82591283-82591302 | Msa1130430:three_prime_UTR | 45.0% | |
CTCCAATATGCAAACCCGTT+TGG | - | chr7_3:82591369-82591388 | Msa1130430:three_prime_UTR | 45.0% | |
! | TGCCAAACGGGTTTGCATAT+TGG | + | chr7_3:82591374-82591393 | None:intergenic | 45.0% |
ACCAGATTCTCTACGGAAGT+CGG | + | chr7_3:82591818-82591837 | None:intergenic | 45.0% | |
ACTTCCGTAGAGAATCTGGT+TGG | - | chr7_3:82591818-82591837 | Msa1130430:CDS | 45.0% | |
ATGGATGATCTCGCTAAAGG+TGG | + | chr7_3:82591844-82591863 | None:intergenic | 45.0% | |
TCGGGTTCAAACCTTGTGAA+TGG | + | chr7_3:82591883-82591902 | None:intergenic | 45.0% | |
TGAACCCGAAGCCTTTCTTA+AGG | - | chr7_3:82591894-82591913 | Msa1130430:intron | 45.0% | |
GGATCCTTAAGAAAGGCTTC+GGG | + | chr7_3:82591901-82591920 | None:intergenic | 45.0% | |
CGGATCCTTAAGAAAGGCTT+CGG | + | chr7_3:82591902-82591921 | None:intergenic | 45.0% | |
TGGACTCGGATCCTTAAGAA+AGG | + | chr7_3:82591908-82591927 | None:intergenic | 45.0% | |
TTATCTGCACCCTACACAGT+TGG | - | chr7_3:82592144-82592163 | Msa1130430:CDS | 45.0% | |
TATCTGCACCCTACACAGTT+GGG | - | chr7_3:82592145-82592164 | Msa1130430:CDS | 45.0% | |
! | AATGGTCGGTTCAAGTGCAA+TGG | - | chr7_3:82592200-82592219 | Msa1130430:CDS | 45.0% |
ATGGTGTTCATGTGGATGCT+TGG | + | chr7_3:82592436-82592455 | None:intergenic | 45.0% | |
GGATCCATAGAACCTGCAAA+AGG | + | chr7_3:82593174-82593193 | None:intergenic | 45.0% | |
TCTATGGATCCAGCATCCAA+TGG | - | chr7_3:82593183-82593202 | Msa1130430:CDS | 45.0% | |
TGGGGATTAATCCTACCAGT+AGG | - | chr7_3:82593252-82593271 | Msa1130430:CDS | 45.0% | |
CAACAATTGCACCTACTGGT+AGG | + | chr7_3:82593266-82593285 | None:intergenic | 45.0% | |
CTGGTATGTGGACATGCATT+TGG | + | chr7_3:82593401-82593420 | None:intergenic | 45.0% | |
ATACCAGCTCACAGAGGAAT+TGG | - | chr7_3:82593414-82593433 | Msa1130430:CDS | 45.0% | |
CCATTCTTCCAAACCAACTG+TGG | + | chr7_3:82593738-82593757 | None:intergenic | 45.0% | |
!! | CCACAGTTGGTTTGGAAGAA+TGG | - | chr7_3:82593735-82593754 | Msa1130430:intron | 45.0% |
CTTCTCCAAGAGGATCCATT+TGG | + | chr7_3:82593933-82593952 | None:intergenic | 45.0% | |
GTCCTTCTTGGCAAACTTCT+AGG | + | chr7_3:82594132-82594151 | None:intergenic | 45.0% | |
! | AGTTTCTGCTGCTGCTTGAT+CGG | - | chr7_3:82594218-82594237 | Msa1130430:CDS | 45.0% |
! | CATCGTCGGAAAGTACATGC+AGG | - | chr7_3:82591297-82591316 | Msa1130430:three_prime_UTR | 50.0% |
TGTTCTGATAAGGTGGAGGG+AGG | + | chr7_3:82591343-82591362 | None:intergenic | 50.0% | |
CCAGATTCTCTACGGAAGTC+GGG | + | chr7_3:82591817-82591836 | None:intergenic | 50.0% | |
GTGGCCAACCAGATTCTCTA+CGG | + | chr7_3:82591825-82591844 | None:intergenic | 50.0% | |
GGGATGGATGATCTCGCTAA+AGG | + | chr7_3:82591847-82591866 | None:intergenic | 50.0% | |
! | GTCGGTTCAAGTGCAATGGT+GGG | - | chr7_3:82592204-82592223 | Msa1130430:CDS | 50.0% |
! | GTTCAAGTGCAATGGTGGGA+TGG | - | chr7_3:82592208-82592227 | Msa1130430:CDS | 50.0% |
GCAGCAGGCACGTTATTTAG+AGG | + | chr7_3:82592321-82592340 | None:intergenic | 50.0% | |
AAATAACGTGCCTGCTGCTG+TGG | - | chr7_3:82592323-82592342 | Msa1130430:CDS | 50.0% | |
CTGCTGCTGTGGCAACAAAT+GGG | - | chr7_3:82592334-82592353 | Msa1130430:CDS | 50.0% | |
TGCTGCTGTGGCAACAAATG+GGG | - | chr7_3:82592335-82592354 | Msa1130430:CDS | 50.0% | |
ATGAGTTCAAACCGAGGCGA+AGG | + | chr7_3:82592665-82592684 | None:intergenic | 50.0% | |
GAGGTCATGAGTTCAAACCG+AGG | + | chr7_3:82592671-82592690 | None:intergenic | 50.0% | |
CTCGCAACAATTGCACCTAC+TGG | + | chr7_3:82593270-82593289 | None:intergenic | 50.0% | |
CAGTAGGTGCAATTGTTGCG+AGG | - | chr7_3:82593268-82593287 | Msa1130430:CDS | 50.0% | |
!! | GGACTTGCTACTGTCCTTCT+TGG | - | chr7_3:82593360-82593379 | Msa1130430:CDS | 50.0% |
TTCCTCTGTGAGCTGGTATG+TGG | + | chr7_3:82593413-82593432 | None:intergenic | 50.0% | |
ATGCCAATTCCTCTGTGAGC+TGG | + | chr7_3:82593420-82593439 | None:intergenic | 50.0% | |
!!! | GTTTTGGGAATGCAAGCAGC+AGG | - | chr7_3:82593784-82593803 | Msa1130430:intron | 50.0% |
CATGCGAGGAAGCCAAAGTT+AGG | + | chr7_3:82594158-82594177 | None:intergenic | 50.0% | |
! | GTTTCTGCTGCTGCTTGATC+GGG | - | chr7_3:82594219-82594238 | Msa1130430:CDS | 50.0% |
CACGAGGAGTCTAACTGAAG+AGG | - | chr7_3:82594400-82594419 | Msa1130430:five_prime_UTR | 50.0% | |
CCCGACTTCCGTAGAGAATC+TGG | - | chr7_3:82591814-82591833 | Msa1130430:CDS | 55.0% | |
TGCACCCTACACAGTTGGGT+GGG | - | chr7_3:82592149-82592168 | Msa1130430:CDS | 55.0% | |
! | GGTCGGTTCAAGTGCAATGG+TGG | - | chr7_3:82592203-82592222 | Msa1130430:CDS | 55.0% |
! | CCATTTGTTGCCACAGCAGC+AGG | + | chr7_3:82592336-82592355 | None:intergenic | 55.0% |
CCTGCTGCTGTGGCAACAAA+TGG | - | chr7_3:82592333-82592352 | Msa1130430:CDS | 55.0% | |
GTCCACATACCAGCTCACAG+AGG | - | chr7_3:82593408-82593427 | Msa1130430:CDS | 55.0% | |
CAGCAGGAGCAACGAATGCT+TGG | - | chr7_3:82593800-82593819 | Msa1130430:intron | 55.0% | |
CTGCACCCTACACAGTTGGG+TGG | - | chr7_3:82592148-82592167 | Msa1130430:CDS | 60.0% | |
ACCCTACACAGTTGGGTGGG+TGG | - | chr7_3:82592152-82592171 | Msa1130430:CDS | 60.0% | |
CCCACCCACCCAACTGTGTA+GGG | + | chr7_3:82592156-82592175 | None:intergenic | 60.0% | |
CCCTACACAGTTGGGTGGGT+GGG | - | chr7_3:82592153-82592172 | Msa1130430:CDS | 60.0% | |
CCTACACAGTTGGGTGGGTG+GGG | - | chr7_3:82592154-82592173 | Msa1130430:CDS | 60.0% | |
ACAGTTGGGTGGGTGGGGAT+TGG | - | chr7_3:82592159-82592178 | Msa1130430:CDS | 60.0% | |
CCCCACCCACCCAACTGTGT+AGG | + | chr7_3:82592157-82592176 | None:intergenic | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr7_3 | gene | 82591041 | 82594530 | 82591041 | ID=Msa1130430;Name=Msa1130430 |
chr7_3 | mRNA | 82591041 | 82594530 | 82591041 | ID=Msa1130430-mRNA-1;Parent=Msa1130430;Name=Msa1130430-mRNA-1;_AED=0.01;_eAED=0.01;_QI=150|1|1|1|1|1|5|471|408 |
chr7_3 | exon | 82591041 | 82591516 | 82591041 | ID=Msa1130430-mRNA-1:exon:24422;Parent=Msa1130430-mRNA-1 |
chr7_3 | exon | 82591589 | 82591898 | 82591589 | ID=Msa1130430-mRNA-1:exon:24421;Parent=Msa1130430-mRNA-1 |
chr7_3 | exon | 82592104 | 82592390 | 82592104 | ID=Msa1130430-mRNA-1:exon:24420;Parent=Msa1130430-mRNA-1 |
chr7_3 | exon | 82593055 | 82593460 | 82593055 | ID=Msa1130430-mRNA-1:exon:24419;Parent=Msa1130430-mRNA-1 |
chr7_3 | exon | 82594162 | 82594530 | 82594162 | ID=Msa1130430-mRNA-1:exon:24418;Parent=Msa1130430-mRNA-1 |
chr7_3 | five_prime_UTR | 82594381 | 82594530 | 82594381 | ID=Msa1130430-mRNA-1:five_prime_utr;Parent=Msa1130430-mRNA-1 |
chr7_3 | CDS | 82594162 | 82594380 | 82594162 | ID=Msa1130430-mRNA-1:cds;Parent=Msa1130430-mRNA-1 |
chr7_3 | CDS | 82593055 | 82593460 | 82593055 | ID=Msa1130430-mRNA-1:cds;Parent=Msa1130430-mRNA-1 |
chr7_3 | CDS | 82592104 | 82592390 | 82592104 | ID=Msa1130430-mRNA-1:cds;Parent=Msa1130430-mRNA-1 |
chr7_3 | CDS | 82591589 | 82591898 | 82591589 | ID=Msa1130430-mRNA-1:cds;Parent=Msa1130430-mRNA-1 |
chr7_3 | CDS | 82591512 | 82591516 | 82591512 | ID=Msa1130430-mRNA-1:cds;Parent=Msa1130430-mRNA-1 |
chr7_3 | three_prime_UTR | 82591041 | 82591511 | 82591041 | ID=Msa1130430-mRNA-1:three_prime_utr;Parent=Msa1130430-mRNA-1 |
Gene Sequence |
Protein sequence |