Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1037550 | XP_013450601.1 | 97.304 | 408 | 11 | 0 | 1 | 408 | 1 | 408 | 0.0 | 821 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1037550 | sp|Q9M363|B561I_ARATH | 52.770 | 343 | 155 | 5 | 37 | 375 | 32 | 371 | 6.25e-129 | 380 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1037550 | A0A072U4F8 | 97.304 | 408 | 11 | 0 | 1 | 408 | 1 | 408 | 0.0 | 821 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0040660 | Msa1037550 | 0.830109 | 3.534258e-55 | -8.615850e-47 |
Msa0629600 | Msa1037550 | 0.806757 | 7.043002e-50 | -8.615850e-47 |
Msa0642950 | Msa1037550 | 0.882800 | 7.685612e-71 | -8.615850e-47 |
Msa0667370 | Msa1037550 | 0.809128 | 2.204662e-50 | -8.615850e-47 |
Msa0688820 | Msa1037550 | 0.851091 | 1.112114e-60 | -8.615850e-47 |
Msa0726330 | Msa1037550 | 0.815107 | 1.095145e-51 | -8.615850e-47 |
Msa0128310 | Msa1037550 | 0.805953 | 1.040418e-49 | -8.615850e-47 |
Msa0174450 | Msa1037550 | 0.802054 | 6.729545e-49 | -8.615850e-47 |
Msa0184680 | Msa1037550 | 0.824222 | 9.070839e-54 | -8.615850e-47 |
Msa0193850 | Msa1037550 | 0.814441 | 1.538119e-51 | -8.615850e-47 |
Msa0199960 | Msa1037550 | 0.886728 | 2.657117e-72 | -8.615850e-47 |
Msa0228250 | Msa1037550 | 0.809290 | 2.035563e-50 | -8.615850e-47 |
Msa0235710 | Msa1037550 | 0.819945 | 8.898257e-53 | -8.615850e-47 |
Msa0379400 | Msa1037550 | 0.828988 | 6.617530e-55 | -8.615850e-47 |
Msa0379440 | Msa1037550 | 0.867748 | 1.088304e-65 | -8.615850e-47 |
Msa0392380 | Msa1037550 | 0.815846 | 7.497173e-52 | -8.615850e-47 |
Msa0440320 | Msa1037550 | 0.828593 | 8.245544e-55 | -8.615850e-47 |
Msa0475290 | Msa1037550 | 0.871245 | 7.916455e-67 | -8.615850e-47 |
Msa1037550 | Msa1078930 | 0.862986 | 3.436293e-64 | -8.615850e-47 |
Msa1037550 | Msa1123930 | 0.874535 | 6.262764e-68 | -8.615850e-47 |
Msa1037550 | Msa1130430 | 0.951101 | 4.150803e-109 | -8.615850e-47 |
Msa1037550 | Msa1169230 | 0.847590 | 1.050655e-59 | -8.615850e-47 |
Msa1037550 | Msa1222590 | 0.866640 | 2.460381e-65 | -8.615850e-47 |
Msa1037550 | Msa1264570 | 0.857928 | 1.168111e-62 | -8.615850e-47 |
Msa1037550 | Msa1327650 | 0.840408 | 8.851287e-58 | -8.615850e-47 |
Msa1037550 | Msa1336610 | 0.812180 | 4.827530e-51 | -8.615850e-47 |
Msa1037550 | Msa1340700 | 0.845951 | 2.947315e-59 | -8.615850e-47 |
Msa1037550 | Msa1426070 | 0.863479 | 2.417542e-64 | -8.615850e-47 |
Msa1037550 | Msa1430750 | 0.864629 | 1.059450e-64 | -8.615850e-47 |
Msa1037550 | Msa1433250 | 0.810786 | 9.692931e-51 | -8.615850e-47 |
Msa1037550 | Msa1436420 | 0.858506 | 7.860465e-63 | -8.615850e-47 |
Msa1037550 | Msa1446110 | 0.944956 | 7.500899e-104 | -8.615850e-47 |
Msa0242490 | Msa1037550 | 0.871647 | 5.827051e-67 | -8.615850e-47 |
Msa0243600 | Msa1037550 | 0.849051 | 4.142865e-60 | -8.615850e-47 |
Msa0255620 | Msa1037550 | 0.817565 | 3.087084e-52 | -8.615850e-47 |
Msa0274440 | Msa1037550 | 0.858181 | 9.825369e-63 | -8.615850e-47 |
Msa0280690 | Msa1037550 | 0.870321 | 1.594440e-66 | -8.615850e-47 |
Msa0282220 | Msa1037550 | 0.854753 | 9.976851e-62 | -8.615850e-47 |
Msa0314170 | Msa1037550 | 0.856753 | 2.599226e-62 | -8.615850e-47 |
Msa0319940 | Msa1037550 | 0.841380 | 4.921611e-58 | -8.615850e-47 |
Msa0333070 | Msa1037550 | 0.834600 | 2.729020e-56 | -8.615850e-47 |
Msa0487500 | Msa1037550 | 0.823292 | 1.498692e-53 | -8.615850e-47 |
Msa0546800 | Msa1037550 | 0.811041 | 8.535033e-51 | -8.615850e-47 |
Msa0601820 | Msa1037550 | 0.809916 | 1.493279e-50 | -8.615850e-47 |
Msa0968350 | Msa1037550 | 0.865924 | 4.147193e-65 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1037550 | MtrunA17_Chr7g0275621 | 97.304 | 408 | 11 | 0 | 1 | 408 | 1 | 408 | 0.0 | 821 |
Msa1037550 | MtrunA17_Chr8g0347591 | 35.608 | 337 | 205 | 6 | 44 | 374 | 44 | 374 | 1.62e-72 | 232 |
Msa1037550 | MtrunA17_Chr8g0347581 | 35.366 | 246 | 146 | 7 | 37 | 275 | 29 | 268 | 4.43e-40 | 144 |
Msa1037550 | MtrunA17_Chr7g0234191 | 29.684 | 411 | 235 | 20 | 6 | 385 | 38 | 425 | 1.96e-32 | 127 |
Msa1037550 | MtrunA17_Chr4g0076051 | 28.571 | 308 | 187 | 10 | 101 | 385 | 87 | 384 | 1.26e-31 | 124 |
Msa1037550 | MtrunA17_Chr2g0278181 | 28.720 | 289 | 186 | 8 | 104 | 378 | 1 | 283 | 2.57e-31 | 121 |
Msa1037550 | MtrunA17_Chr5g0444651 | 27.616 | 344 | 215 | 10 | 63 | 379 | 51 | 387 | 4.60e-31 | 123 |
Msa1037550 | MtrunA17_Chr2g0290131 | 29.470 | 302 | 183 | 10 | 104 | 384 | 94 | 386 | 6.16e-29 | 116 |
Msa1037550 | MtrunA17_Chr5g0447771 | 35.593 | 177 | 106 | 4 | 218 | 386 | 247 | 423 | 6.50e-27 | 111 |
Msa1037550 | MtrunA17_Chr3g0101961 | 26.316 | 285 | 197 | 6 | 104 | 378 | 87 | 368 | 4.60e-25 | 105 |
Msa1037550 | MtrunA17_Chr8g0347601 | 32.948 | 173 | 109 | 5 | 39 | 205 | 23 | 194 | 1.33e-19 | 86.3 |
Msa1037550 | MtrunA17_Chr2g0285681 | 24.427 | 262 | 166 | 8 | 74 | 315 | 518 | 767 | 4.04e-15 | 77.4 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1037550 | AT3G61750.1 | 52.770 | 343 | 155 | 5 | 37 | 375 | 32 | 371 | 6.35e-130 | 380 |
Msa1037550 | AT3G61750.2 | 54.392 | 296 | 130 | 3 | 82 | 375 | 2 | 294 | 7.14e-115 | 338 |
Msa1037550 | AT3G07570.1 | 35.519 | 366 | 218 | 9 | 26 | 380 | 11 | 369 | 9.11e-69 | 222 |
Msa1037550 | AT5G47530.1 | 28.521 | 284 | 181 | 8 | 104 | 373 | 88 | 363 | 3.86e-31 | 123 |
Msa1037550 | AT4G12980.1 | 35.556 | 180 | 109 | 3 | 216 | 388 | 212 | 391 | 7.66e-31 | 122 |
Msa1037550 | AT3G25290.1 | 34.359 | 195 | 119 | 4 | 201 | 388 | 198 | 390 | 1.37e-30 | 121 |
Msa1037550 | AT3G25290.2 | 34.359 | 195 | 119 | 4 | 201 | 388 | 198 | 390 | 1.37e-30 | 121 |
Msa1037550 | AT5G35735.1 | 25.581 | 344 | 223 | 11 | 74 | 398 | 57 | 386 | 1.75e-27 | 113 |
Msa1037550 | AT3G59070.1 | 30.667 | 225 | 140 | 5 | 187 | 397 | 183 | 405 | 2.45e-25 | 107 |
Msa1037550 | AT4G17280.1 | 26.625 | 323 | 208 | 9 | 72 | 375 | 58 | 370 | 3.03e-25 | 106 |
Msa1037550 | AT2G04850.1 | 26.398 | 322 | 197 | 12 | 92 | 383 | 71 | 382 | 1.39e-20 | 93.2 |
Msa1037550 | AT5G54830.1 | 23.423 | 333 | 205 | 12 | 79 | 379 | 535 | 849 | 1.12e-12 | 70.5 |
Find 134 sgRNAs with CRISPR-Local
Find 214 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AAATGGGGCTGAAATTTATT+TGG | 0.168870 | 7_1:-74214856 | Msa1037550:CDS |
AGAGGATCCATTTGGAAATT+TGG | 0.184762 | 7_1:+74213284 | None:intergenic |
TGCATTTCAAGTTTGGAATT+TGG | 0.193087 | 7_1:+74216158 | None:intergenic |
ACTACCATTGTTCCTATCTT+TGG | 0.226002 | 7_1:-74216059 | Msa1037550:five_prime_UTR |
GTACTAAAAGCCAATAAAAT+TGG | 0.228379 | 7_1:+74214795 | None:intergenic |
CGAAACTTGGAATCCCTATT+TGG | 0.245262 | 7_1:+74213512 | None:intergenic |
AGAAAGAATCATGGAATAAT+TGG | 0.246187 | 7_1:-74213984 | Msa1037550:CDS |
AGTTATCGTTCTCGAAATAT+TGG | 0.252993 | 7_1:-74213342 | Msa1037550:CDS |
TGCAGCCTTGAACATAGTTT+TGG | 0.253562 | 7_1:-74213438 | Msa1037550:CDS |
CATTCTTCTTGAGACCAAAT+AGG | 0.267115 | 7_1:-74213526 | Msa1037550:CDS |
GGACTTGCTACTGTCCTTCT+TGG | 0.268455 | 7_1:-74213843 | Msa1037550:CDS |
CATGGAATAATTGGTATTAT+AGG | 0.273911 | 7_1:-74213975 | Msa1037550:CDS |
CATTCAATCATTCAATTTGT+TGG | 0.280269 | 7_1:-74213876 | Msa1037550:CDS |
AGTCTCTTGCATTTCAAGTT+TGG | 0.289905 | 7_1:+74216151 | None:intergenic |
TGCCAAACGGGTTTGCATAT+TGG | 0.291944 | 7_1:+74215834 | None:intergenic |
GTCCTTCTTGGCAAACTTCT+AGG | 0.297800 | 7_1:+74213077 | None:intergenic |
AATGGCAAAGCTAAGATCTT+TGG | 0.310082 | 7_1:-74216015 | Msa1037550:CDS |
CCTGCTGCTGTGGCAACAAA+TGG | 0.314910 | 7_1:-74214873 | Msa1037550:CDS |
CCTTGTGCTAAGTATTCTTC+AGG | 0.315018 | 7_1:-74213757 | Msa1037550:intron |
CAATTTGTTGGATTTGCATT+TGG | 0.319893 | 7_1:-74213864 | Msa1037550:CDS |
AAAGTTAGGATTGTCCTTCT+TGG | 0.329171 | 7_1:+74213065 | None:intergenic |
CCCTACACAGTTGGGTGGGT+GGG | 0.331717 | 7_1:-74215053 | Msa1037550:CDS |
CTTCAAACAACAATTCCATT+TGG | 0.339138 | 7_1:-74214825 | Msa1037550:CDS |
CTGCTGCTGTGGCAACAAAT+GGG | 0.354136 | 7_1:-74214872 | Msa1037550:CDS |
CCACAGTTGGTTTGGAAGAA+TGG | 0.354486 | 7_1:-74213471 | Msa1037550:CDS |
ATGGAATAATTGGTATTATA+GGG | 0.356476 | 7_1:-74213974 | Msa1037550:CDS |
ACAGTTGGGTGGGTGGGGAT+TGG | 0.365724 | 7_1:-74215047 | Msa1037550:CDS |
AAATGTGTATGCCTCTTAAC+TGG | 0.366457 | 7_1:+74212748 | None:intergenic |
AAGATTTAAATCCAGTTAAG+AGG | 0.367391 | 7_1:-74212759 | Msa1037550:three_prime_UTR |
AACTTCAATACCATTGCATT+AGG | 0.373456 | 7_1:-74215942 | Msa1037550:CDS |
CTGGTATGTGGACATGCATT+TGG | 0.374194 | 7_1:+74213805 | None:intergenic |
CTCTCAACTGTCTTGTTGTT+AGG | 0.381805 | 7_1:-74216123 | Msa1037550:five_prime_UTR |
ATTCTTCTTGAGACCAAATA+GGG | 0.382671 | 7_1:-74213525 | Msa1037550:CDS |
GCAGCAGGCACGTTATTTAG+AGG | 0.384723 | 7_1:+74214888 | None:intergenic |
CTTCTCCAAGAGGATCCATT+TGG | 0.387230 | 7_1:+74213276 | None:intergenic |
TTGAAATTTAAGAATCAGAT+TGG | 0.395957 | 7_1:-74212897 | Msa1037550:three_prime_UTR |
AGTTTCTGCTGCTGCTTGAT+CGG | 0.396757 | 7_1:-74212988 | Msa1037550:three_prime_UTR |
CATTCCCAAAACTATGTTCA+AGG | 0.410754 | 7_1:+74213433 | None:intergenic |
CATGCGAGGAAGCCAAAGTT+AGG | 0.413562 | 7_1:+74213051 | None:intergenic |
ATACCAGCTCACAGAGGAAT+TGG | 0.414517 | 7_1:-74213789 | Msa1037550:CDS |
AAAATTGGTTGCTTTCCAAA+TGG | 0.417606 | 7_1:+74214810 | None:intergenic |
CCTACACAGTTGGGTGGGTG+GGG | 0.424223 | 7_1:-74215052 | Msa1037550:CDS |
AATTCATATGTATGCCAAAC+GGG | 0.434998 | 7_1:+74215822 | None:intergenic |
GTTTCTGCTGCTGCTTGATC+GGG | 0.435140 | 7_1:-74212987 | Msa1037550:three_prime_UTR |
ACAAGCTATGGATTCCTTGT+TGG | 0.442212 | 7_1:-74213380 | Msa1037550:CDS |
CTCCAATATGCAAACCCGTT+TGG | 0.444241 | 7_1:-74215836 | Msa1037550:CDS |
CCATTTGTTGCCACAGCAGC+AGG | 0.445115 | 7_1:+74214873 | None:intergenic |
AATTTGTACCACAGTTGGTT+TGG | 0.448506 | 7_1:-74213479 | Msa1037550:CDS |
CCAAGAAATATTCAAACAAA+AGG | 0.450332 | 7_1:-74213245 | Msa1037550:intron |
ATCAAGCAGTATTATCTAAG+AGG | 0.452095 | 7_1:-74214951 | Msa1037550:CDS |
CCTTCCACCAAATTTCCAAA+TGG | 0.454867 | 7_1:-74213291 | Msa1037550:CDS |
TGCGAGGTACTTCAAACATA+AGG | 0.459343 | 7_1:-74213919 | Msa1037550:CDS |
AAATATTGGCATATTTAAAA+CGG | 0.460423 | 7_1:-74213328 | Msa1037550:CDS |
ATCTTTGGATCACACTGATC+TGG | 0.464570 | 7_1:-74216044 | Msa1037550:five_prime_UTR |
TGGTATGTGGACATGCATTT+GGG | 0.466439 | 7_1:+74213806 | None:intergenic |
CAGCAGGAGCAACGAATGCT+TGG | 0.473840 | 7_1:-74213406 | Msa1037550:CDS |
AAGAAGGACAATCCTAACTT+TGG | 0.474137 | 7_1:-74213063 | Msa1037550:three_prime_UTR |
TCTCATTTGAATCAAACCAT+TGG | 0.474801 | 7_1:+74214004 | None:intergenic |
TACCTAGAAGTTTGCCAAGA+AGG | 0.479211 | 7_1:-74213079 | Msa1037550:three_prime_UTR |
GATCAGTGTGATCCAAAGAT+AGG | 0.481592 | 7_1:+74216047 | None:intergenic |
CCATTTGGAAATTTGGTGGA+AGG | 0.482086 | 7_1:+74213291 | None:intergenic |
TGAATCAAACCATTGGATGC+TGG | 0.484210 | 7_1:+74214011 | None:intergenic |
ATTCAAATGAGAAAGAATCA+TGG | 0.487178 | 7_1:-74213993 | Msa1037550:CDS |
AATTTCCAAATGGATCCTCT+TGG | 0.487835 | 7_1:-74213281 | Msa1037550:CDS |
TCAAACATAAGGAACCCCTT+TGG | 0.493885 | 7_1:-74213908 | Msa1037550:CDS |
TGTCATCATGCTTTGACAGA+TGG | 0.495892 | 7_1:+74214754 | None:intergenic |
ACCCTACACAGTTGGGTGGG+TGG | 0.496193 | 7_1:-74215054 | Msa1037550:CDS |
TATATCTACATCATTCGATA+AGG | 0.496508 | 7_1:+74213108 | None:intergenic |
GCAAAATTTCTACAACATGT+AGG | 0.500492 | 7_1:-74212785 | Msa1037550:three_prime_UTR |
TTGGCATACATATGAATTGA+GGG | 0.509114 | 7_1:-74215817 | Msa1037550:intron |
CATTTGGAAATTTGGTGGAA+GGG | 0.509644 | 7_1:+74213292 | None:intergenic |
GGATCCATTTGGAAATTTGG+TGG | 0.510637 | 7_1:+74213287 | None:intergenic |
CCCACCCACCCAACTGTGTA+GGG | 0.511172 | 7_1:+74215053 | None:intergenic |
ATGCATATCCTAACAAAAGA+TGG | 0.513584 | 7_1:+74215981 | None:intergenic |
TGTGGAATTTGTACCACAGT+TGG | 0.515734 | 7_1:-74213484 | Msa1037550:CDS |
TGCTGCTGTGGCAACAAATG+GGG | 0.517059 | 7_1:-74214871 | Msa1037550:CDS |
CTCGCAACAATTGCACCTAC+TGG | 0.521608 | 7_1:+74213936 | None:intergenic |
ATTTCAAGTTTGGAATTTGG+TGG | 0.522605 | 7_1:+74216161 | None:intergenic |
TGATCAAAAGAGCATATTCA+CGG | 0.529334 | 7_1:-74212859 | Msa1037550:three_prime_UTR |
GGTCGGTTCAAGTGCAATGG+TGG | 0.531243 | 7_1:-74215003 | Msa1037550:CDS |
GATATGTTCTGATAAGGTGG+AGG | 0.531436 | 7_1:+74215861 | None:intergenic |
GATGATATGTTCTGATAAGG+TGG | 0.532974 | 7_1:+74215858 | None:intergenic |
CAATTCATATGTATGCCAAA+CGG | 0.533146 | 7_1:+74215821 | None:intergenic |
TATCTGCACCCTACACAGTT+GGG | 0.533408 | 7_1:-74215061 | Msa1037550:CDS |
ATTCCAAGTTTCGCAAAATG+TGG | 0.534133 | 7_1:-74213502 | Msa1037550:CDS |
ATAATTGGTATTATAGGGTG+GGG | 0.536263 | 7_1:-74213969 | Msa1037550:CDS |
GGAGATGATATGTTCTGATA+AGG | 0.538172 | 7_1:+74215855 | None:intergenic |
TAAGATCTTTGGTTCAGCTA+TGG | 0.539939 | 7_1:-74216004 | Msa1037550:CDS |
TTCCTCTGTGAGCTGGTATG+TGG | 0.543323 | 7_1:+74213793 | None:intergenic |
ACACTGATCTGGTCTATGAA+TGG | 0.544015 | 7_1:-74216033 | Msa1037550:exon |
CTGCACCCTACACAGTTGGG+TGG | 0.544650 | 7_1:-74215058 | Msa1037550:CDS |
ATGCCAATTCCTCTGTGAGC+TGG | 0.546668 | 7_1:+74213786 | None:intergenic |
AATAATTGGTATTATAGGGT+GGG | 0.550790 | 7_1:-74213970 | Msa1037550:CDS |
AATGCTTGGAAGACAAGCTA+TGG | 0.552134 | 7_1:-74213392 | Msa1037550:CDS |
TTATCTGCACCCTACACAGT+TGG | 0.554095 | 7_1:-74215062 | Msa1037550:CDS |
GAATAATTGGTATTATAGGG+TGG | 0.554975 | 7_1:-74213971 | Msa1037550:CDS |
TTTGGCATACATATGAATTG+AGG | 0.559705 | 7_1:-74215818 | Msa1037550:CDS |
ATGGTGTTCATGTGGATGCT+TGG | 0.562567 | 7_1:+74214773 | None:intergenic |
TGTTCTGATAAGGTGGAGGG+AGG | 0.564304 | 7_1:+74215865 | None:intergenic |
GATCAAAAGAGCATATTCAC+GGG | 0.566726 | 7_1:-74212858 | Msa1037550:three_prime_UTR |
TTGAATGTAGATAGAACCAA+AGG | 0.567909 | 7_1:+74213892 | None:intergenic |
AAATAACGTGCCTGCTGCTG+TGG | 0.575038 | 7_1:-74214883 | Msa1037550:CDS |
GTTCAAGTGCAATGGTGGGA+TGG | 0.583060 | 7_1:-74214998 | Msa1037550:CDS |
TGCACCCTACACAGTTGGGT+GGG | 0.592706 | 7_1:-74215057 | Msa1037550:CDS |
TGAATGTAGATAGAACCAAA+GGG | 0.600269 | 7_1:+74213893 | None:intergenic |
AGTAGAGTTGTAATCCAAGA+AGG | 0.601579 | 7_1:+74213829 | None:intergenic |
GGAAAGATTTCTTCTCCAAG+AGG | 0.601984 | 7_1:+74213266 | None:intergenic |
TCTATGGATCCAGCATCCAA+TGG | 0.602260 | 7_1:-74214020 | Msa1037550:CDS |
CCCCACCCACCCAACTGTGT+AGG | 0.602301 | 7_1:+74215052 | None:intergenic |
ATATGTTCTGATAAGGTGGA+GGG | 0.605129 | 7_1:+74215862 | None:intergenic |
CACGAGGAGTCTAACTGAAG+AGG | 0.608139 | 7_1:-74212807 | Msa1037550:three_prime_UTR |
TTCAATCTCAAGTTCATGCG+AGG | 0.613465 | 7_1:+74213037 | None:intergenic |
CCTGAAGAATACTTAGCACA+AGG | 0.616760 | 7_1:+74213757 | None:intergenic |
ACAAAACTCAAGAATAAGAG+AGG | 0.617617 | 7_1:+74216083 | None:intergenic |
TCAGAAGTCATTGCAAACAA+AGG | 0.618190 | 7_1:-74214918 | Msa1037550:CDS |
CAACAATTGCACCTACTGGT+AGG | 0.621409 | 7_1:+74213940 | None:intergenic |
AATGGTCGGTTCAAGTGCAA+TGG | 0.628638 | 7_1:-74215006 | Msa1037550:CDS |
TGATCCAAAGATAGGAACAA+TGG | 0.629638 | 7_1:+74216055 | None:intergenic |
AGGAGATGACACAACATCGT+CGG | 0.644400 | 7_1:-74215922 | Msa1037550:CDS |
TGCAGATAATATGATTGTTG+TGG | 0.646735 | 7_1:+74215076 | None:intergenic |
CATCGTCGGAAAGTACATGC+AGG | 0.648599 | 7_1:-74215908 | Msa1037550:CDS |
CCATTCTTCCAAACCAACTG+TGG | 0.660006 | 7_1:+74213471 | None:intergenic |
GTCGGTTCAAGTGCAATGGT+GGG | 0.660569 | 7_1:-74215002 | Msa1037550:CDS |
TGGGGATTAATCCTACCAGT+AGG | 0.662402 | 7_1:-74213951 | Msa1037550:CDS |
ATAATGCAGGGTGAATGTGT+TGG | 0.669771 | 7_1:-74213160 | Msa1037550:intron |
TGTGTCATCTCCTAATGCAA+TGG | 0.677178 | 7_1:+74215932 | None:intergenic |
CAGTAGGTGCAATTGTTGCG+AGG | 0.680721 | 7_1:-74213935 | Msa1037550:CDS |
TTTGACAGATGGTGTTCATG+TGG | 0.686431 | 7_1:+74214765 | None:intergenic |
GAATGTAGATAGAACCAAAG+GGG | 0.711232 | 7_1:+74213894 | None:intergenic |
CTAACAACAAGACAGTTGAG+AGG | 0.723501 | 7_1:+74216124 | None:intergenic |
GTGGGATGGATTAATAAACG+TGG | 0.733010 | 7_1:-74214984 | Msa1037550:CDS |
TAACAATTATAATACCAACA+AGG | 0.736320 | 7_1:+74213366 | None:intergenic |
ATGTTATTCTATGAAGCACG+AGG | 0.740815 | 7_1:-74212823 | Msa1037550:three_prime_UTR |
GTCCACATACCAGCTCACAG+AGG | 0.789985 | 7_1:-74213795 | Msa1037550:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | AATAATAAATCTTTAATTTC+TGG | + | chr7_1:74213720-74213739 | None:intergenic | 10.0% |
!!! | TCAATTTTAAATCAAAATAA+TGG | + | chr7_1:74214768-74214787 | None:intergenic | 10.0% |
!!! | TCTTTTATAACTTTGTTATT+AGG | - | chr7_1:74213373-74213392 | Msa1037550:CDS | 15.0% |
!!! | ATTATATTTGATTTTTCTTC+AGG | - | chr7_1:74214140-74214159 | Msa1037550:intron | 15.0% |
!! | AATTAAAGTTAGCAATAATT+TGG | + | chr7_1:74214229-74214248 | None:intergenic | 15.0% |
!! | ATTCTTTGTTAATGTTAAAA+GGG | + | chr7_1:74214376-74214395 | None:intergenic | 15.0% |
!! | TATTCTTTGTTAATGTTAAA+AGG | + | chr7_1:74214377-74214396 | None:intergenic | 15.0% |
!! | AAAGAATAATATCATTTCAA+TGG | - | chr7_1:74214389-74214408 | Msa1037550:intron | 15.0% |
!! | AAATATTGGCATATTTAAAA+CGG | - | chr7_1:74215535-74215554 | Msa1037550:intron | 15.0% |
!! | ATCAAACATAATAAGTGAAA+TGG | + | chr7_1:74213138-74213157 | None:intergenic | 20.0% |
!! | ATCAATGATAGATATTACTT+TGG | + | chr7_1:74213248-74213267 | None:intergenic | 20.0% |
!! | TTCTTTGTTAATGTTAAAAG+GGG | + | chr7_1:74214375-74214394 | None:intergenic | 20.0% |
!! | ATCACAAAAATTAAGAAAGT+TGG | - | chr7_1:74214463-74214482 | Msa1037550:intron | 20.0% |
!! | TGCAAACATAAACTAATTAT+CGG | + | chr7_1:74214535-74214554 | None:intergenic | 20.0% |
!! | ATGGAATAATTGGTATTATA+GGG | - | chr7_1:74214889-74214908 | Msa1037550:CDS | 20.0% |
!! | TCGCAAAAGTTATTTAAATT+TGG | - | chr7_1:74215244-74215263 | Msa1037550:intron | 20.0% |
!! | TAACAATTATAATACCAACA+AGG | + | chr7_1:74215500-74215519 | None:intergenic | 20.0% |
!! | ACAAAACAACTTAAAAAACA+AGG | + | chr7_1:74215654-74215673 | None:intergenic | 20.0% |
!!! | TTTTATACAAGTACAAAACT+AGG | + | chr7_1:74215731-74215750 | None:intergenic | 20.0% |
!! | TTGAAATTTAAGAATCAGAT+TGG | - | chr7_1:74215966-74215985 | Msa1037550:CDS | 20.0% |
!!! | TGTTTGATTGTTGTTTAGAA+TGG | - | chr7_1:74213150-74213169 | Msa1037550:exon | 25.0% |
! | ATAGATATTACTTTGGACTT+TGG | + | chr7_1:74213241-74213260 | None:intergenic | 25.0% |
! | TGATGTGATGAATAAATGAA+TGG | - | chr7_1:74213264-74213283 | Msa1037550:CDS | 25.0% |
! | TTTCAACGAACTTATGAATT+AGG | + | chr7_1:74213308-74213327 | None:intergenic | 25.0% |
!! | TTCGTTGAAATAACAACTTT+TGG | - | chr7_1:74213318-74213337 | Msa1037550:CDS | 25.0% |
!! | GCTTTAAGTTATAAAACTCA+TGG | + | chr7_1:74213408-74213427 | None:intergenic | 25.0% |
!!! | TATTTTGATCTGATTGGAAT+TGG | + | chr7_1:74213585-74213604 | None:intergenic | 25.0% |
!!! | CAACATTATTTTGATCTGAT+TGG | + | chr7_1:74213591-74213610 | None:intergenic | 25.0% |
! | CAATCAGATCAAAATAATGT+TGG | - | chr7_1:74213589-74213608 | Msa1037550:intron | 25.0% |
!!! | ATTTTCTAGAGATGGAAAAA+TGG | - | chr7_1:74213839-74213858 | Msa1037550:CDS | 25.0% |
! | GTACTAAAAGCCAATAAAAT+TGG | + | chr7_1:74214071-74214090 | None:intergenic | 25.0% |
! | CAAACATAAACTAATTATCG+GGG | + | chr7_1:74214533-74214552 | None:intergenic | 25.0% |
! | GCAAACATAAACTAATTATC+GGG | + | chr7_1:74214534-74214553 | None:intergenic | 25.0% |
!! | TTGAAAGGAGTCTTATATAA+AGG | - | chr7_1:74214632-74214651 | Msa1037550:intron | 25.0% |
! | GATTAATTTCAACTGAATCT+TGG | - | chr7_1:74214676-74214695 | Msa1037550:intron | 25.0% |
! | ATTCAAATGAGAAAGAATCA+TGG | - | chr7_1:74214870-74214889 | Msa1037550:CDS | 25.0% |
! | AGAAAGAATCATGGAATAAT+TGG | - | chr7_1:74214879-74214898 | Msa1037550:CDS | 25.0% |
! | CATGGAATAATTGGTATTAT+AGG | - | chr7_1:74214888-74214907 | Msa1037550:CDS | 25.0% |
! | AATAATTGGTATTATAGGGT+GGG | - | chr7_1:74214893-74214912 | Msa1037550:CDS | 25.0% |
! | CATTCAATCATTCAATTTGT+TGG | - | chr7_1:74214987-74215006 | Msa1037550:CDS | 25.0% |
!!! | CCTTTTGTTTGAATATTTCT+TGG | + | chr7_1:74215621-74215640 | None:intergenic | 25.0% |
! | CCAAGAAATATTCAAACAAA+AGG | - | chr7_1:74215618-74215637 | Msa1037550:intron | 25.0% |
!!! | TAATACAATCTTGATAATGC+AGG | - | chr7_1:74215690-74215709 | Msa1037550:intron | 25.0% |
!!! | AATACAATCTTGATAATGCA+GGG | - | chr7_1:74215691-74215710 | Msa1037550:intron | 25.0% |
! | TATATCTACATCATTCGATA+AGG | + | chr7_1:74215758-74215777 | None:intergenic | 25.0% |
! | AAGATTTAAATCCAGTTAAG+AGG | - | chr7_1:74216104-74216123 | Msa1037550:five_prime_UTR | 25.0% |
!! | ATTTCAAGTTTGGAATTTGG+TGG | + | chr7_1:74212705-74212724 | None:intergenic | 30.0% |
!! | TGCATTTCAAGTTTGGAATT+TGG | + | chr7_1:74212708-74212727 | None:intergenic | 30.0% |
ACAAAACTCAAGAATAAGAG+AGG | + | chr7_1:74212783-74212802 | None:intergenic | 30.0% | |
ATGCATATCCTAACAAAAGA+TGG | + | chr7_1:74212885-74212904 | None:intergenic | 30.0% | |
AACTTCAATACCATTGCATT+AGG | - | chr7_1:74212921-74212940 | Msa1037550:three_prime_UTR | 30.0% | |
AATTCATATGTATGCCAAAC+GGG | + | chr7_1:74213044-74213063 | None:intergenic | 30.0% | |
CAATTCATATGTATGCCAAA+CGG | + | chr7_1:74213045-74213064 | None:intergenic | 30.0% | |
TTTGGCATACATATGAATTG+AGG | - | chr7_1:74213045-74213064 | Msa1037550:three_prime_UTR | 30.0% | |
TTGGCATACATATGAATTGA+GGG | - | chr7_1:74213046-74213065 | Msa1037550:three_prime_UTR | 30.0% | |
GAATTCTAATTCCTCATTGT+TGG | - | chr7_1:74213087-74213106 | Msa1037550:three_prime_UTR | 30.0% | |
TGAATGGAAAAAATGTGGTT+GGG | + | chr7_1:74213524-74213543 | None:intergenic | 30.0% | |
!!! | TTCTGGCTAGATTTTAGAAT+TGG | + | chr7_1:74213703-74213722 | None:intergenic | 30.0% |
TGCAGATAATATGATTGTTG+TGG | + | chr7_1:74213790-74213809 | None:intergenic | 30.0% | |
ATCAAGCAGTATTATCTAAG+AGG | - | chr7_1:74213912-74213931 | Msa1037550:CDS | 30.0% | |
AAATGGGGCTGAAATTTATT+TGG | - | chr7_1:74214007-74214026 | Msa1037550:CDS | 30.0% | |
CTTCAAACAACAATTCCATT+TGG | - | chr7_1:74214038-74214057 | Msa1037550:intron | 30.0% | |
! | AAAATTGGTTGCTTTCCAAA+TGG | + | chr7_1:74214056-74214075 | None:intergenic | 30.0% |
! | TGGAAAGCAACCAATTTTAT+TGG | - | chr7_1:74214058-74214077 | Msa1037550:intron | 30.0% |
!!! | TTTTTTTTTTTCCTTCGCCT+CGG | - | chr7_1:74214311-74214330 | Msa1037550:intron | 30.0% |
ACGATCATACTAGTAAATTG+TGG | + | chr7_1:74214416-74214435 | None:intergenic | 30.0% | |
! | TCAACGAGATCTTATGTTTT+GGG | + | chr7_1:74214439-74214458 | None:intergenic | 30.0% |
TAATGCAGCTGAAATTTGAA+AGG | - | chr7_1:74214617-74214636 | Msa1037550:intron | 30.0% | |
! | TTGAAAATTATCCCTTTTGC+AGG | - | chr7_1:74214819-74214838 | Msa1037550:CDS | 30.0% |
TCTCATTTGAATCAAACCAT+TGG | + | chr7_1:74214862-74214881 | None:intergenic | 30.0% | |
GAATAATTGGTATTATAGGG+TGG | - | chr7_1:74214892-74214911 | Msa1037550:CDS | 30.0% | |
ATAATTGGTATTATAGGGTG+GGG | - | chr7_1:74214894-74214913 | Msa1037550:CDS | 30.0% | |
TGAATGTAGATAGAACCAAA+GGG | + | chr7_1:74214973-74214992 | None:intergenic | 30.0% | |
TTGAATGTAGATAGAACCAA+AGG | + | chr7_1:74214974-74214993 | None:intergenic | 30.0% | |
!! | CAATTTGTTGGATTTGCATT+TGG | - | chr7_1:74214999-74215018 | Msa1037550:CDS | 30.0% |
GTTATTATAACATGAGTCAG+TGG | + | chr7_1:74215136-74215155 | None:intergenic | 30.0% | |
AACCATGTATGTTCAGATAT+TGG | - | chr7_1:74215314-74215333 | Msa1037550:intron | 30.0% | |
ATTCTTCTTGAGACCAAATA+GGG | - | chr7_1:74215338-74215357 | Msa1037550:intron | 30.0% | |
AGTTATCGTTCTCGAAATAT+TGG | - | chr7_1:74215521-74215540 | Msa1037550:intron | 30.0% | |
! | TGATCAAAAGAGCATATTCA+CGG | - | chr7_1:74216004-74216023 | Msa1037550:CDS | 30.0% |
GCAAAATTTCTACAACATGT+AGG | - | chr7_1:74216078-74216097 | Msa1037550:five_prime_UTR | 30.0% | |
!! | AGTCTCTTGCATTTCAAGTT+TGG | + | chr7_1:74212715-74212734 | None:intergenic | 35.0% |
ACTACCATTGTTCCTATCTT+TGG | - | chr7_1:74212804-74212823 | Msa1037550:three_prime_UTR | 35.0% | |
TGATCCAAAGATAGGAACAA+TGG | + | chr7_1:74212811-74212830 | None:intergenic | 35.0% | |
AATGGCAAAGCTAAGATCTT+TGG | - | chr7_1:74212848-74212867 | Msa1037550:three_prime_UTR | 35.0% | |
! | TAAGATCTTTGGTTCAGCTA+TGG | - | chr7_1:74212859-74212878 | Msa1037550:three_prime_UTR | 35.0% |
ATATGTTCTGATAAGGTGGA+GGG | + | chr7_1:74213004-74213023 | None:intergenic | 35.0% | |
GATGATATGTTCTGATAAGG+TGG | + | chr7_1:74213008-74213027 | None:intergenic | 35.0% | |
GGAGATGATATGTTCTGATA+AGG | + | chr7_1:74213011-74213030 | None:intergenic | 35.0% | |
TAGAAGTAGAACCAACAATG+AGG | + | chr7_1:74213101-74213120 | None:intergenic | 35.0% | |
GTGAATGGAAAAAATGTGGT+TGG | + | chr7_1:74213525-74213544 | None:intergenic | 35.0% | |
CCTTGTGAATGGAAAAAATG+TGG | + | chr7_1:74213529-74213548 | None:intergenic | 35.0% | |
!!! | CCACATTTTTTCCATTCACA+AGG | - | chr7_1:74213526-74213545 | Msa1037550:CDS | 35.0% |
TCTAGAGATGGAAAAATGGT+CGG | - | chr7_1:74213843-74213862 | Msa1037550:CDS | 35.0% | |
TCAGAAGTCATTGCAAACAA+AGG | - | chr7_1:74213945-74213964 | Msa1037550:CDS | 35.0% | |
! | TTTTCTTCAGGTGCAAAATC+AGG | - | chr7_1:74214152-74214171 | Msa1037550:intron | 35.0% |
! | GTTAATGTTAAAAGGGGTGT+TGG | + | chr7_1:74214369-74214388 | None:intergenic | 35.0% |
! | GTCAACGAGATCTTATGTTT+TGG | + | chr7_1:74214440-74214459 | None:intergenic | 35.0% |
!! | AGCAGAGAGCTTTTTATTTG+AGG | - | chr7_1:74214724-74214743 | Msa1037550:CDS | 35.0% |
!! | GCAGAGAGCTTTTTATTTGA+GGG | - | chr7_1:74214725-74214744 | Msa1037550:CDS | 35.0% |
GAATGTAGATAGAACCAAAG+GGG | + | chr7_1:74214972-74214991 | None:intergenic | 35.0% | |
AGTAGAGTTGTAATCCAAGA+AGG | + | chr7_1:74215037-74215056 | None:intergenic | 35.0% | |
TGCCAATATCTGAACATACA+TGG | + | chr7_1:74215319-74215338 | None:intergenic | 35.0% | |
CATTCTTCTTGAGACCAAAT+AGG | - | chr7_1:74215337-74215356 | Msa1037550:intron | 35.0% | |
ATTCCAAGTTTCGCAAAATG+TGG | - | chr7_1:74215361-74215380 | Msa1037550:intron | 35.0% | |
! | ATTCCACATTTTGCGAAACT+TGG | + | chr7_1:74215367-74215386 | None:intergenic | 35.0% |
AATTTGTACCACAGTTGGTT+TGG | - | chr7_1:74215384-74215403 | Msa1037550:intron | 35.0% | |
CATTCCCAAAACTATGTTCA+AGG | + | chr7_1:74215433-74215452 | None:intergenic | 35.0% | |
! | CATTTGGAAATTTGGTGGAA+GGG | + | chr7_1:74215574-74215593 | None:intergenic | 35.0% |
AGAGGATCCATTTGGAAATT+TGG | + | chr7_1:74215582-74215601 | None:intergenic | 35.0% | |
AATTTCCAAATGGATCCTCT+TGG | - | chr7_1:74215582-74215601 | Msa1037550:intron | 35.0% | |
AAAGTTAGGATTGTCCTTCT+TGG | + | chr7_1:74215801-74215820 | None:intergenic | 35.0% | |
AAGAAGGACAATCCTAACTT+TGG | - | chr7_1:74215800-74215819 | Msa1037550:intron | 35.0% | |
! | GATCAAAAGAGCATATTCAC+GGG | - | chr7_1:74216005-74216024 | Msa1037550:CDS | 35.0% |
ATGTTATTCTATGAAGCACG+AGG | - | chr7_1:74216040-74216059 | Msa1037550:five_prime_UTR | 35.0% | |
AAATGTGTATGCCTCTTAAC+TGG | + | chr7_1:74216118-74216137 | None:intergenic | 35.0% | |
CTAACAACAAGACAGTTGAG+AGG | + | chr7_1:74212742-74212761 | None:intergenic | 40.0% | |
!! | CTCTCAACTGTCTTGTTGTT+AGG | - | chr7_1:74212740-74212759 | Msa1037550:three_prime_UTR | 40.0% |
GATCAGTGTGATCCAAAGAT+AGG | + | chr7_1:74212819-74212838 | None:intergenic | 40.0% | |
ATCTTTGGATCACACTGATC+TGG | - | chr7_1:74212819-74212838 | Msa1037550:three_prime_UTR | 40.0% | |
ACACTGATCTGGTCTATGAA+TGG | - | chr7_1:74212830-74212849 | Msa1037550:three_prime_UTR | 40.0% | |
! | AGCTATGGCCATCTTTTGTT+AGG | - | chr7_1:74212874-74212893 | Msa1037550:three_prime_UTR | 40.0% |
TGTGTCATCTCCTAATGCAA+TGG | + | chr7_1:74212934-74212953 | None:intergenic | 40.0% | |
GATATGTTCTGATAAGGTGG+AGG | + | chr7_1:74213005-74213024 | None:intergenic | 40.0% | |
TGGAAAAAATGTGGTTGGGA+TGG | + | chr7_1:74213520-74213539 | None:intergenic | 40.0% | |
GATCTGATTGGAATTGGACT+CGG | + | chr7_1:74213579-74213598 | None:intergenic | 40.0% | |
!! | GGGATTGGATTTTCTAGAGA+TGG | - | chr7_1:74213831-74213850 | Msa1037550:CDS | 40.0% |
!! | GTGGGATGGATTAATAAACG+TGG | - | chr7_1:74213879-74213898 | Msa1037550:CDS | 40.0% |
TTTGACAGATGGTGTTCATG+TGG | + | chr7_1:74214101-74214120 | None:intergenic | 40.0% | |
TGTCATCATGCTTTGACAGA+TGG | + | chr7_1:74214112-74214131 | None:intergenic | 40.0% | |
TTGGATAGCTCAAGAGTTAG+AGG | + | chr7_1:74214350-74214369 | None:intergenic | 40.0% | |
! | TATCCCTTTTGCAGGTTCTA+TGG | - | chr7_1:74214827-74214846 | Msa1037550:CDS | 40.0% |
GATCCATAGAACCTGCAAAA+GGG | + | chr7_1:74214833-74214852 | None:intergenic | 40.0% | |
TGAATCAAACCATTGGATGC+TGG | + | chr7_1:74214855-74214874 | None:intergenic | 40.0% | |
! | TGCGAGGTACTTCAAACATA+AGG | - | chr7_1:74214944-74214963 | Msa1037550:CDS | 40.0% |
TCAAACATAAGGAACCCCTT+TGG | - | chr7_1:74214955-74214974 | Msa1037550:CDS | 40.0% | |
TGGTATGTGGACATGCATTT+GGG | + | chr7_1:74215060-74215079 | None:intergenic | 40.0% | |
CCTGAAGAATACTTAGCACA+AGG | + | chr7_1:74215109-74215128 | None:intergenic | 40.0% | |
CCTTGTGCTAAGTATTCTTC+AGG | - | chr7_1:74215106-74215125 | Msa1037550:intron | 40.0% | |
CGAAACTTGGAATCCCTATT+TGG | + | chr7_1:74215354-74215373 | None:intergenic | 40.0% | |
TGTGGAATTTGTACCACAGT+TGG | - | chr7_1:74215379-74215398 | Msa1037550:intron | 40.0% | |
! | TGCAGCCTTGAACATAGTTT+TGG | - | chr7_1:74215425-74215444 | Msa1037550:intron | 40.0% |
! | GCAGCCTTGAACATAGTTTT+GGG | - | chr7_1:74215426-74215445 | Msa1037550:intron | 40.0% |
AATGCTTGGAAGACAAGCTA+TGG | - | chr7_1:74215471-74215490 | Msa1037550:intron | 40.0% | |
ACAAGCTATGGATTCCTTGT+TGG | - | chr7_1:74215483-74215502 | Msa1037550:intron | 40.0% | |
! | CCATTTGGAAATTTGGTGGA+AGG | + | chr7_1:74215575-74215594 | None:intergenic | 40.0% |
CCTTCCACCAAATTTCCAAA+TGG | - | chr7_1:74215572-74215591 | Msa1037550:intron | 40.0% | |
GGATCCATTTGGAAATTTGG+TGG | + | chr7_1:74215579-74215598 | None:intergenic | 40.0% | |
GGAAAGATTTCTTCTCCAAG+AGG | + | chr7_1:74215600-74215619 | None:intergenic | 40.0% | |
ATAATGCAGGGTGAATGTGT+TGG | - | chr7_1:74215703-74215722 | Msa1037550:intron | 40.0% | |
TACCTAGAAGTTTGCCAAGA+AGG | - | chr7_1:74215784-74215803 | Msa1037550:intron | 40.0% | |
TTCAATCTCAAGTTCATGCG+AGG | + | chr7_1:74215829-74215848 | None:intergenic | 40.0% | |
AGGAGATGACACAACATCGT+CGG | - | chr7_1:74212941-74212960 | Msa1037550:three_prime_UTR | 45.0% | |
CTCCAATATGCAAACCCGTT+TGG | - | chr7_1:74213027-74213046 | Msa1037550:three_prime_UTR | 45.0% | |
! | TGCCAAACGGGTTTGCATAT+TGG | + | chr7_1:74213032-74213051 | None:intergenic | 45.0% |
ACCAGATTCTCTACGGAAGT+CGG | + | chr7_1:74213475-74213494 | None:intergenic | 45.0% | |
ACTTCCGTAGAGAATCTGGT+TGG | - | chr7_1:74213475-74213494 | Msa1037550:CDS | 45.0% | |
ATGGATGATCTCGCTAAAGG+TGG | + | chr7_1:74213501-74213520 | None:intergenic | 45.0% | |
TCGGGTTCAAACCTTGTGAA+TGG | + | chr7_1:74213540-74213559 | None:intergenic | 45.0% | |
TGAACCCGAAGCCTTTCTTA+AGG | - | chr7_1:74213551-74213570 | Msa1037550:intron | 45.0% | |
GGATCCTTAAGAAAGGCTTC+GGG | + | chr7_1:74213558-74213577 | None:intergenic | 45.0% | |
CGGATCCTTAAGAAAGGCTT+CGG | + | chr7_1:74213559-74213578 | None:intergenic | 45.0% | |
TGGACTCGGATCCTTAAGAA+AGG | + | chr7_1:74213565-74213584 | None:intergenic | 45.0% | |
TTATCTGCACCCTACACAGT+TGG | - | chr7_1:74213801-74213820 | Msa1037550:CDS | 45.0% | |
TATCTGCACCCTACACAGTT+GGG | - | chr7_1:74213802-74213821 | Msa1037550:CDS | 45.0% | |
! | AATGGTCGGTTCAAGTGCAA+TGG | - | chr7_1:74213857-74213876 | Msa1037550:CDS | 45.0% |
ATGGTGTTCATGTGGATGCT+TGG | + | chr7_1:74214093-74214112 | None:intergenic | 45.0% | |
GGATCCATAGAACCTGCAAA+AGG | + | chr7_1:74214834-74214853 | None:intergenic | 45.0% | |
TCTATGGATCCAGCATCCAA+TGG | - | chr7_1:74214843-74214862 | Msa1037550:CDS | 45.0% | |
TGGGGATTAATCCTACCAGT+AGG | - | chr7_1:74214912-74214931 | Msa1037550:CDS | 45.0% | |
CAACAATTGCACCTACTGGT+AGG | + | chr7_1:74214926-74214945 | None:intergenic | 45.0% | |
CTGGTATGTGGACATGCATT+TGG | + | chr7_1:74215061-74215080 | None:intergenic | 45.0% | |
ATACCAGCTCACAGAGGAAT+TGG | - | chr7_1:74215074-74215093 | Msa1037550:CDS | 45.0% | |
CCATTCTTCCAAACCAACTG+TGG | + | chr7_1:74215395-74215414 | None:intergenic | 45.0% | |
!! | CCACAGTTGGTTTGGAAGAA+TGG | - | chr7_1:74215392-74215411 | Msa1037550:intron | 45.0% |
CTTCTCCAAGAGGATCCATT+TGG | + | chr7_1:74215590-74215609 | None:intergenic | 45.0% | |
GTCCTTCTTGGCAAACTTCT+AGG | + | chr7_1:74215789-74215808 | None:intergenic | 45.0% | |
! | AGTTTCTGCTGCTGCTTGAT+CGG | - | chr7_1:74215875-74215894 | Msa1037550:CDS | 45.0% |
! | CATCGTCGGAAAGTACATGC+AGG | - | chr7_1:74212955-74212974 | Msa1037550:three_prime_UTR | 50.0% |
TGTTCTGATAAGGTGGAGGG+AGG | + | chr7_1:74213001-74213020 | None:intergenic | 50.0% | |
CCAGATTCTCTACGGAAGTC+GGG | + | chr7_1:74213474-74213493 | None:intergenic | 50.0% | |
GTGGCCAACCAGATTCTCTA+CGG | + | chr7_1:74213482-74213501 | None:intergenic | 50.0% | |
GGGATGGATGATCTCGCTAA+AGG | + | chr7_1:74213504-74213523 | None:intergenic | 50.0% | |
! | GTCGGTTCAAGTGCAATGGT+GGG | - | chr7_1:74213861-74213880 | Msa1037550:CDS | 50.0% |
! | GTTCAAGTGCAATGGTGGGA+TGG | - | chr7_1:74213865-74213884 | Msa1037550:CDS | 50.0% |
GCAGCAGGCACGTTATTTAG+AGG | + | chr7_1:74213978-74213997 | None:intergenic | 50.0% | |
AAATAACGTGCCTGCTGCTG+TGG | - | chr7_1:74213980-74213999 | Msa1037550:CDS | 50.0% | |
CTGCTGCTGTGGCAACAAAT+GGG | - | chr7_1:74213991-74214010 | Msa1037550:CDS | 50.0% | |
TGCTGCTGTGGCAACAAATG+GGG | - | chr7_1:74213992-74214011 | Msa1037550:CDS | 50.0% | |
ATGAGTTCAAACCGAGGCGA+AGG | + | chr7_1:74214325-74214344 | None:intergenic | 50.0% | |
GAGGTCATGAGTTCAAACCG+AGG | + | chr7_1:74214331-74214350 | None:intergenic | 50.0% | |
CTCGCAACAATTGCACCTAC+TGG | + | chr7_1:74214930-74214949 | None:intergenic | 50.0% | |
CAGTAGGTGCAATTGTTGCG+AGG | - | chr7_1:74214928-74214947 | Msa1037550:CDS | 50.0% | |
!! | GGACTTGCTACTGTCCTTCT+TGG | - | chr7_1:74215020-74215039 | Msa1037550:CDS | 50.0% |
TTCCTCTGTGAGCTGGTATG+TGG | + | chr7_1:74215073-74215092 | None:intergenic | 50.0% | |
ATGCCAATTCCTCTGTGAGC+TGG | + | chr7_1:74215080-74215099 | None:intergenic | 50.0% | |
!!! | GTTTTGGGAATGCAAGCAGC+AGG | - | chr7_1:74215441-74215460 | Msa1037550:intron | 50.0% |
CATGCGAGGAAGCCAAAGTT+AGG | + | chr7_1:74215815-74215834 | None:intergenic | 50.0% | |
! | GTTTCTGCTGCTGCTTGATC+GGG | - | chr7_1:74215876-74215895 | Msa1037550:CDS | 50.0% |
CACGAGGAGTCTAACTGAAG+AGG | - | chr7_1:74216056-74216075 | Msa1037550:five_prime_UTR | 50.0% | |
CCCGACTTCCGTAGAGAATC+TGG | - | chr7_1:74213471-74213490 | Msa1037550:CDS | 55.0% | |
TGCACCCTACACAGTTGGGT+GGG | - | chr7_1:74213806-74213825 | Msa1037550:CDS | 55.0% | |
! | GGTCGGTTCAAGTGCAATGG+TGG | - | chr7_1:74213860-74213879 | Msa1037550:CDS | 55.0% |
! | CCATTTGTTGCCACAGCAGC+AGG | + | chr7_1:74213993-74214012 | None:intergenic | 55.0% |
CCTGCTGCTGTGGCAACAAA+TGG | - | chr7_1:74213990-74214009 | Msa1037550:CDS | 55.0% | |
GTCCACATACCAGCTCACAG+AGG | - | chr7_1:74215068-74215087 | Msa1037550:CDS | 55.0% | |
CAGCAGGAGCAACGAATGCT+TGG | - | chr7_1:74215457-74215476 | Msa1037550:intron | 55.0% | |
CTGCACCCTACACAGTTGGG+TGG | - | chr7_1:74213805-74213824 | Msa1037550:CDS | 60.0% | |
ACCCTACACAGTTGGGTGGG+TGG | - | chr7_1:74213809-74213828 | Msa1037550:CDS | 60.0% | |
CCCACCCACCCAACTGTGTA+GGG | + | chr7_1:74213813-74213832 | None:intergenic | 60.0% | |
CCCTACACAGTTGGGTGGGT+GGG | - | chr7_1:74213810-74213829 | Msa1037550:CDS | 60.0% | |
CCTACACAGTTGGGTGGGTG+GGG | - | chr7_1:74213811-74213830 | Msa1037550:CDS | 60.0% | |
ACAGTTGGGTGGGTGGGGAT+TGG | - | chr7_1:74213816-74213835 | Msa1037550:CDS | 60.0% | |
CCCCACCCACCCAACTGTGT+AGG | + | chr7_1:74213814-74213833 | None:intergenic | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr7_1 | gene | 74212699 | 74216186 | 74212699 | ID=Msa1037550;Name=Msa1037550 |
chr7_1 | mRNA | 74212699 | 74216186 | 74212699 | ID=Msa1037550-mRNA-1;Parent=Msa1037550;Name=Msa1037550-mRNA-1;_AED=0.01;_eAED=0.01;_QI=150|1|1|1|1|1|5|470|408 |
chr7_1 | exon | 74212699 | 74213173 | 74212699 | ID=Msa1037550-mRNA-1:exon:18618;Parent=Msa1037550-mRNA-1 |
chr7_1 | exon | 74213246 | 74213555 | 74213246 | ID=Msa1037550-mRNA-1:exon:18617;Parent=Msa1037550-mRNA-1 |
chr7_1 | exon | 74213758 | 74214044 | 74213758 | ID=Msa1037550-mRNA-1:exon:18616;Parent=Msa1037550-mRNA-1 |
chr7_1 | exon | 74214712 | 74215117 | 74214712 | ID=Msa1037550-mRNA-1:exon:18615;Parent=Msa1037550-mRNA-1 |
chr7_1 | exon | 74215818 | 74216186 | 74215818 | ID=Msa1037550-mRNA-1:exon:18614;Parent=Msa1037550-mRNA-1 |
chr7_1 | five_prime_UTR | 74216037 | 74216186 | 74216037 | ID=Msa1037550-mRNA-1:five_prime_utr;Parent=Msa1037550-mRNA-1 |
chr7_1 | CDS | 74215818 | 74216036 | 74215818 | ID=Msa1037550-mRNA-1:cds;Parent=Msa1037550-mRNA-1 |
chr7_1 | CDS | 74214712 | 74215117 | 74214712 | ID=Msa1037550-mRNA-1:cds;Parent=Msa1037550-mRNA-1 |
chr7_1 | CDS | 74213758 | 74214044 | 74213758 | ID=Msa1037550-mRNA-1:cds;Parent=Msa1037550-mRNA-1 |
chr7_1 | CDS | 74213246 | 74213555 | 74213246 | ID=Msa1037550-mRNA-1:cds;Parent=Msa1037550-mRNA-1 |
chr7_1 | CDS | 74213169 | 74213173 | 74213169 | ID=Msa1037550-mRNA-1:cds;Parent=Msa1037550-mRNA-1 |
chr7_1 | three_prime_UTR | 74212699 | 74213168 | 74212699 | ID=Msa1037550-mRNA-1:three_prime_utr;Parent=Msa1037550-mRNA-1 |
Gene Sequence |
Protein sequence |