Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0475290 | XP_003602846.2 | 85.938 | 192 | 22 | 2 | 1 | 192 | 1 | 187 | 9.54e-89 | 268 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0475290 | sp|Q41001|BCP_PEA | 73.196 | 194 | 45 | 5 | 1 | 192 | 1 | 189 | 2.06e-76 | 230 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0475290 | B7FGF6 | 85.938 | 192 | 22 | 2 | 1 | 192 | 1 | 187 | 4.55e-89 | 268 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0040660 | Msa0475290 | 0.804142 | 2.489775e-49 | -8.615850e-47 |
| Msa0199960 | Msa0475290 | 0.826187 | 3.112317e-54 | -8.615850e-47 |
| Msa0379400 | Msa0475290 | 0.913507 | 5.681416e-84 | -8.615850e-47 |
| Msa0379440 | Msa0475290 | 0.936559 | 1.431611e-97 | -8.615850e-47 |
| Msa0475290 | Msa0526550 | 0.802502 | 5.443230e-49 | -8.615850e-47 |
| Msa0475290 | Msa0642950 | 0.803599 | 3.227652e-49 | -8.615850e-47 |
| Msa0475290 | Msa0688820 | 0.825723 | 4.013132e-54 | -8.615850e-47 |
| Msa0475290 | Msa0968350 | 0.805838 | 1.100046e-49 | -8.615850e-47 |
| Msa0475290 | Msa1037550 | 0.871245 | 7.916455e-67 | -8.615850e-47 |
| Msa0475290 | Msa1078930 | 0.811146 | 8.098980e-51 | -8.615850e-47 |
| Msa0475290 | Msa1123930 | 0.813842 | 2.085465e-51 | -8.615850e-47 |
| Msa0475290 | Msa1130430 | 0.859497 | 3.970822e-63 | -8.615850e-47 |
| Msa0475290 | Msa1169230 | 0.809983 | 1.444432e-50 | -8.615850e-47 |
| Msa0475290 | Msa1222590 | 0.809449 | 1.881720e-50 | -8.615850e-47 |
| Msa0475290 | Msa1363340 | 0.802859 | 4.593812e-49 | -8.615850e-47 |
| Msa0475290 | Msa1386610 | 0.804703 | 1.901975e-49 | -8.615850e-47 |
| Msa0475290 | Msa1426070 | 0.816720 | 4.782331e-52 | -8.615850e-47 |
| Msa0475290 | Msa1430750 | 0.807724 | 4.395680e-50 | -8.615850e-47 |
| Msa0475290 | Msa1436420 | 0.830912 | 2.248371e-55 | -8.615850e-47 |
| Msa0475290 | Msa1446110 | 0.855351 | 6.686236e-62 | -8.615850e-47 |
| Msa0242490 | Msa0475290 | 0.820389 | 7.040289e-53 | -8.615850e-47 |
| Msa0243600 | Msa0475290 | 0.820933 | 5.278812e-53 | -8.615850e-47 |
| Msa0280690 | Msa0475290 | 0.817666 | 2.929379e-52 | -8.615850e-47 |
| Msa0282220 | Msa0475290 | 0.831113 | 2.006341e-55 | -8.615850e-47 |
| Msa0314170 | Msa0475290 | 0.804473 | 2.124086e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0475290 | MtrunA17_Chr3g0132441 | 85.938 | 192 | 22 | 2 | 1 | 192 | 1 | 187 | 8.77e-93 | 268 |
| Msa0475290 | MtrunA17_Chr3g0132431 | 77.083 | 192 | 36 | 3 | 1 | 192 | 1 | 184 | 1.82e-91 | 265 |
| Msa0475290 | MtrunA17_Chr3g0132511 | 60.909 | 220 | 43 | 4 | 7 | 188 | 6 | 220 | 5.91e-70 | 212 |
| Msa0475290 | MtrunA17_Chr3g0132701 | 61.468 | 218 | 43 | 4 | 7 | 188 | 6 | 218 | 2.12e-69 | 210 |
| Msa0475290 | MtrunA17_Chr3g0132411 | 67.717 | 127 | 41 | 0 | 1 | 127 | 39 | 165 | 5.70e-57 | 177 |
| Msa0475290 | MtrunA17_Chr8g0335531 | 47.027 | 185 | 88 | 6 | 7 | 186 | 4 | 183 | 1.91e-40 | 135 |
| Msa0475290 | MtrunA17_Chr8g0335571 | 56.098 | 123 | 50 | 3 | 5 | 124 | 2 | 123 | 8.54e-40 | 134 |
| Msa0475290 | MtrunA17_Chr1g0196801 | 37.576 | 165 | 94 | 3 | 24 | 186 | 20 | 177 | 1.96e-32 | 115 |
| Msa0475290 | MtrunA17_Chr5g0394321 | 42.282 | 149 | 75 | 7 | 13 | 156 | 10 | 152 | 3.77e-29 | 106 |
| Msa0475290 | MtrunA17_Chr2g0323021 | 40.816 | 147 | 79 | 4 | 13 | 153 | 12 | 156 | 3.01e-28 | 105 |
| Msa0475290 | MtrunA17_Chr4g0064041 | 50.833 | 120 | 51 | 4 | 25 | 138 | 27 | 144 | 4.68e-28 | 108 |
| Msa0475290 | MtrunA17_Chr4g0064041 | 50.000 | 100 | 45 | 2 | 27 | 121 | 191 | 290 | 1.55e-25 | 101 |
| Msa0475290 | MtrunA17_Chr6g0481491 | 48.000 | 100 | 52 | 0 | 27 | 126 | 28 | 127 | 8.80e-28 | 103 |
| Msa0475290 | MtrunA17_Chr1g0211101 | 34.694 | 147 | 85 | 4 | 3 | 138 | 7 | 153 | 1.12e-25 | 97.8 |
| Msa0475290 | MtrunA17_Chr2g0306461 | 39.516 | 124 | 72 | 1 | 3 | 123 | 4 | 127 | 2.48e-25 | 97.4 |
| Msa0475290 | MtrunA17_Chr1g0205701 | 38.710 | 124 | 71 | 5 | 1 | 121 | 1 | 122 | 2.58e-24 | 94.4 |
| Msa0475290 | MtrunA17_Chr6g0459441 | 44.118 | 102 | 56 | 1 | 21 | 121 | 20 | 121 | 9.84e-24 | 92.4 |
| Msa0475290 | MtrunA17_Chr4g0033131 | 39.552 | 134 | 74 | 4 | 3 | 129 | 4 | 137 | 2.12e-23 | 91.7 |
| Msa0475290 | MtrunA17_Chr4g0033531 | 39.552 | 134 | 74 | 4 | 3 | 129 | 4 | 137 | 2.12e-23 | 91.7 |
| Msa0475290 | MtrunA17_Chr7g0253701 | 41.860 | 129 | 66 | 4 | 1 | 124 | 1 | 125 | 3.92e-23 | 90.5 |
| Msa0475290 | MtrunA17_Chr7g0253671 | 41.860 | 129 | 66 | 4 | 1 | 124 | 1 | 125 | 3.92e-23 | 90.5 |
| Msa0475290 | MtrunA17_Chr7g0253681 | 38.889 | 126 | 75 | 2 | 1 | 124 | 1 | 126 | 4.30e-22 | 87.8 |
| Msa0475290 | MtrunA17_Chr1g0177341 | 39.474 | 114 | 64 | 3 | 13 | 121 | 8 | 121 | 1.34e-21 | 86.3 |
| Msa0475290 | MtrunA17_Chr1g0177331 | 39.474 | 114 | 64 | 3 | 13 | 121 | 8 | 121 | 1.34e-21 | 86.3 |
| Msa0475290 | MtrunA17_Chr8g0387804 | 41.748 | 103 | 56 | 2 | 24 | 122 | 26 | 128 | 4.62e-21 | 84.3 |
| Msa0475290 | MtrunA17_Chr7g0253631 | 38.400 | 125 | 71 | 3 | 1 | 122 | 1 | 122 | 7.14e-20 | 84.0 |
| Msa0475290 | MtrunA17_Chr7g0253731 | 36.434 | 129 | 72 | 4 | 1 | 124 | 1 | 124 | 7.29e-20 | 82.0 |
| Msa0475290 | MtrunA17_Chr6g0483981 | 35.326 | 184 | 109 | 7 | 1 | 174 | 1 | 184 | 8.76e-20 | 86.3 |
| Msa0475290 | MtrunA17_Chr2g0289741 | 36.029 | 136 | 83 | 3 | 16 | 147 | 16 | 151 | 2.29e-19 | 80.9 |
| Msa0475290 | MtrunA17_Chr7g0253641 | 38.525 | 122 | 73 | 2 | 1 | 121 | 1 | 121 | 3.20e-19 | 82.0 |
| Msa0475290 | MtrunA17_Chr4g0041811 | 39.316 | 117 | 66 | 2 | 10 | 121 | 15 | 131 | 4.54e-19 | 81.3 |
| Msa0475290 | MtrunA17_Chr2g0301431 | 40.870 | 115 | 61 | 4 | 7 | 120 | 15 | 123 | 9.39e-19 | 78.2 |
| Msa0475290 | MtrunA17_Chr8g0360371 | 35.075 | 134 | 79 | 4 | 12 | 141 | 8 | 137 | 2.36e-18 | 80.9 |
| Msa0475290 | MtrunA17_Chr7g0253761 | 36.585 | 123 | 76 | 2 | 1 | 122 | 1 | 122 | 2.87e-18 | 78.2 |
| Msa0475290 | MtrunA17_Chr2g0319611 | 42.157 | 102 | 52 | 2 | 29 | 123 | 28 | 129 | 3.97e-18 | 79.7 |
| Msa0475290 | MtrunA17_Chr4g0039721 | 28.485 | 165 | 108 | 3 | 2 | 160 | 7 | 167 | 2.35e-17 | 75.9 |
| Msa0475290 | MtrunA17_Chr3g0125791 | 43.299 | 97 | 51 | 3 | 24 | 119 | 30 | 123 | 3.36e-17 | 73.9 |
| Msa0475290 | MtrunA17_Chr6g0453921 | 36.842 | 133 | 74 | 6 | 8 | 136 | 20 | 146 | 4.75e-17 | 75.1 |
| Msa0475290 | MtrunA17_Chr2g0331181 | 34.641 | 153 | 88 | 4 | 7 | 149 | 3 | 153 | 5.06e-17 | 75.1 |
| Msa0475290 | MtrunA17_Chr2g0324721 | 36.691 | 139 | 77 | 4 | 29 | 159 | 29 | 164 | 6.00e-17 | 75.1 |
| Msa0475290 | MtrunA17_Chr4g0062341 | 32.680 | 153 | 87 | 6 | 13 | 159 | 24 | 166 | 8.45e-17 | 74.3 |
| Msa0475290 | MtrunA17_Chr4g0062311 | 32.680 | 153 | 87 | 6 | 13 | 159 | 24 | 166 | 8.45e-17 | 74.3 |
| Msa0475290 | MtrunA17_Chr4g0001571 | 38.835 | 103 | 61 | 2 | 21 | 122 | 23 | 124 | 2.07e-16 | 73.2 |
| Msa0475290 | MtrunA17_Chr6g0453801 | 30.409 | 171 | 100 | 6 | 1 | 167 | 8 | 163 | 3.84e-16 | 72.4 |
| Msa0475290 | MtrunA17_Chr2g0324711 | 36.364 | 121 | 70 | 3 | 8 | 121 | 2 | 122 | 7.82e-16 | 74.3 |
| Msa0475290 | MtrunA17_Chr6g0458331 | 37.864 | 103 | 58 | 3 | 24 | 121 | 34 | 135 | 8.43e-16 | 71.6 |
| Msa0475290 | MtrunA17_Chr4g0040291 | 32.258 | 155 | 100 | 4 | 29 | 180 | 27 | 179 | 2.31e-15 | 70.9 |
| Msa0475290 | MtrunA17_Chr1g0150131 | 38.614 | 101 | 58 | 2 | 42 | 138 | 45 | 145 | 2.36e-14 | 68.2 |
| Msa0475290 | MtrunA17_Chr3g0136871 | 35.714 | 98 | 62 | 1 | 42 | 138 | 47 | 144 | 2.90e-14 | 67.8 |
| Msa0475290 | MtrunA17_Chr4g0073901 | 30.714 | 140 | 91 | 3 | 1 | 134 | 3 | 142 | 5.05e-14 | 67.0 |
| Msa0475290 | MtrunA17_Chr8g0385021 | 29.381 | 194 | 109 | 7 | 8 | 174 | 1 | 193 | 9.52e-14 | 67.8 |
| Msa0475290 | MtrunA17_Chr4g0064031 | 37.037 | 108 | 59 | 5 | 18 | 116 | 18 | 125 | 1.24e-13 | 65.5 |
| Msa0475290 | MtrunA17_Chr8g0385031 | 31.250 | 176 | 100 | 6 | 8 | 166 | 1 | 172 | 1.25e-13 | 67.8 |
| Msa0475290 | MtrunA17_Chr4g0073921 | 34.375 | 128 | 76 | 5 | 1 | 121 | 3 | 129 | 1.25e-13 | 67.4 |
| Msa0475290 | MtrunA17_Chr8g0380711 | 39.000 | 100 | 52 | 5 | 24 | 119 | 25 | 119 | 4.41e-13 | 63.2 |
| Msa0475290 | MtrunA17_Chr8g0385041 | 33.557 | 149 | 79 | 5 | 28 | 162 | 26 | 168 | 6.83e-13 | 65.9 |
| Msa0475290 | MtrunA17_Chr6g0453791 | 30.435 | 138 | 93 | 3 | 7 | 142 | 11 | 147 | 5.40e-12 | 61.6 |
| Msa0475290 | MtrunA17_Chr5g0440804 | 33.929 | 112 | 68 | 4 | 30 | 138 | 33 | 141 | 1.86e-11 | 59.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0475290 | AT1G72230.1 | 46.809 | 188 | 84 | 4 | 3 | 183 | 1 | 179 | 4.62e-49 | 157 |
| Msa0475290 | AT1G22480.1 | 64.130 | 92 | 33 | 0 | 35 | 126 | 27 | 118 | 4.21e-36 | 124 |
| Msa0475290 | AT2G32300.1 | 43.651 | 126 | 70 | 1 | 4 | 128 | 3 | 128 | 8.62e-30 | 110 |
| Msa0475290 | AT2G32300.2 | 43.651 | 126 | 70 | 1 | 4 | 128 | 33 | 158 | 2.94e-29 | 110 |
| Msa0475290 | AT3G60270.1 | 46.667 | 105 | 56 | 0 | 22 | 126 | 21 | 125 | 5.88e-28 | 103 |
| Msa0475290 | AT2G26720.1 | 38.182 | 165 | 98 | 4 | 25 | 186 | 27 | 190 | 7.23e-27 | 101 |
| Msa0475290 | AT5G07475.1 | 38.926 | 149 | 81 | 3 | 24 | 172 | 27 | 165 | 1.23e-26 | 100 |
| Msa0475290 | AT2G31050.1 | 45.217 | 115 | 58 | 3 | 25 | 137 | 27 | 138 | 2.41e-25 | 97.8 |
| Msa0475290 | AT2G44790.1 | 50.526 | 95 | 45 | 1 | 35 | 127 | 36 | 130 | 5.10e-25 | 97.1 |
| Msa0475290 | AT5G26330.1 | 44.554 | 101 | 53 | 2 | 24 | 121 | 21 | 121 | 1.02e-23 | 93.2 |
| Msa0475290 | AT3G27200.1 | 39.161 | 143 | 76 | 4 | 1 | 140 | 1 | 135 | 5.65e-23 | 90.9 |
| Msa0475290 | AT3G17675.1 | 38.095 | 105 | 64 | 1 | 18 | 121 | 23 | 127 | 3.30e-21 | 85.1 |
| Msa0475290 | AT3G60280.1 | 42.157 | 102 | 59 | 0 | 23 | 124 | 20 | 121 | 1.96e-20 | 85.5 |
| Msa0475290 | AT5G53870.2 | 34.810 | 158 | 93 | 4 | 28 | 175 | 31 | 188 | 3.50e-18 | 81.3 |
| Msa0475290 | AT5G53870.1 | 34.810 | 158 | 93 | 4 | 28 | 175 | 31 | 188 | 5.28e-18 | 80.9 |
| Msa0475290 | AT5G20230.1 | 36.047 | 172 | 91 | 5 | 27 | 179 | 25 | 196 | 7.70e-18 | 77.8 |
| Msa0475290 | AT4G31840.1 | 33.803 | 142 | 86 | 4 | 3 | 136 | 1 | 142 | 4.45e-17 | 75.5 |
| Msa0475290 | AT2G25060.1 | 37.719 | 114 | 65 | 3 | 28 | 135 | 32 | 145 | 8.16e-17 | 74.7 |
| Msa0475290 | AT3G18590.1 | 34.646 | 127 | 76 | 2 | 1 | 121 | 1 | 126 | 1.31e-16 | 74.3 |
| Msa0475290 | AT4G28365.1 | 32.895 | 152 | 94 | 4 | 29 | 177 | 31 | 177 | 7.47e-16 | 72.8 |
| Msa0475290 | AT1G64640.1 | 37.705 | 122 | 69 | 3 | 24 | 138 | 30 | 151 | 1.15e-15 | 72.0 |
| Msa0475290 | AT5G15350.1 | 36.667 | 120 | 71 | 3 | 8 | 122 | 7 | 126 | 3.07e-15 | 70.5 |
| Msa0475290 | AT5G57920.1 | 37.113 | 97 | 59 | 2 | 42 | 137 | 43 | 138 | 4.84e-15 | 70.1 |
| Msa0475290 | AT5G57920.3 | 37.113 | 97 | 59 | 2 | 42 | 137 | 75 | 170 | 5.42e-15 | 70.9 |
| Msa0475290 | AT4G27520.1 | 34.722 | 144 | 83 | 4 | 10 | 142 | 9 | 152 | 7.05e-15 | 72.0 |
| Msa0475290 | AT5G57920.2 | 37.113 | 97 | 59 | 2 | 42 | 137 | 42 | 137 | 8.51e-15 | 69.3 |
| Msa0475290 | AT3G53330.1 | 32.540 | 126 | 78 | 4 | 23 | 144 | 184 | 306 | 1.92e-14 | 70.5 |
| Msa0475290 | AT4G30590.1 | 33.673 | 98 | 64 | 1 | 42 | 138 | 48 | 145 | 5.37e-14 | 67.4 |
| Msa0475290 | AT4G12880.1 | 34.167 | 120 | 72 | 5 | 7 | 122 | 10 | 126 | 7.15e-14 | 66.2 |
| Msa0475290 | AT1G45063.2 | 36.207 | 116 | 63 | 5 | 26 | 135 | 148 | 258 | 9.47e-14 | 68.2 |
| Msa0475290 | AT1G45063.1 | 36.207 | 116 | 63 | 5 | 26 | 135 | 148 | 258 | 1.04e-13 | 68.9 |
| Msa0475290 | AT5G14345.1 | 30.469 | 128 | 81 | 3 | 13 | 133 | 2 | 128 | 1.67e-13 | 65.1 |
| Msa0475290 | AT3G20570.1 | 33.721 | 172 | 102 | 5 | 9 | 171 | 15 | 183 | 3.05e-13 | 65.9 |
| Msa0475290 | AT1G48940.1 | 37.755 | 98 | 54 | 3 | 30 | 121 | 29 | 125 | 6.53e-13 | 64.3 |
| Msa0475290 | AT4G32490.1 | 30.841 | 107 | 71 | 2 | 29 | 132 | 33 | 139 | 1.26e-12 | 64.3 |
| Msa0475290 | AT2G02850.1 | 39.000 | 100 | 51 | 4 | 24 | 119 | 33 | 126 | 2.09e-12 | 62.0 |
| Msa0475290 | AT1G79800.1 | 33.333 | 117 | 67 | 3 | 29 | 135 | 36 | 151 | 2.25e-12 | 63.2 |
| Msa0475290 | AT2G23990.1 | 33.684 | 95 | 61 | 2 | 42 | 134 | 47 | 141 | 2.87e-12 | 63.2 |
| Msa0475290 | AT5G25090.1 | 32.258 | 124 | 77 | 3 | 7 | 125 | 9 | 130 | 2.17e-11 | 60.5 |
| Msa0475290 | AT4G01380.1 | 31.193 | 109 | 65 | 4 | 33 | 133 | 78 | 184 | 4.25e-11 | 60.1 |
| Msa0475290 | AT3G01070.1 | 38.462 | 117 | 66 | 3 | 9 | 122 | 12 | 125 | 5.38e-11 | 58.9 |
Find 82 sgRNAs with CRISPR-Local
Find 200 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAAACAAAAGTTTGTTTAAA+AGG | 0.118930 | 3_3:-78402115 | None:intergenic |
| GTTTGATCTATCCAGATTTA+TGG | 0.172815 | 3_3:-78401110 | Msa0475290:three_prime_UTR |
| CTTCTTCTTAGCAATTAATA+TGG | 0.256926 | 3_3:-78401911 | Msa0475290:CDS |
| AGTGGTGGTGGTGGAGGGTG+TGG | 0.258082 | 3_3:+78401322 | None:intergenic |
| GTTGAAAATTTAAATGAGTT+TGG | 0.262842 | 3_3:+78400807 | None:intergenic |
| AATTCAAACAGAAGATTATT+AGG | 0.263314 | 3_3:-78400740 | Msa0475290:three_prime_UTR |
| GGTGTGGTGGTGGTTGCAGC+AGG | 0.286767 | 3_3:+78401338 | None:intergenic |
| GGTGGTGGAGGGTGTGGTGG+TGG | 0.288673 | 3_3:+78401328 | None:intergenic |
| GGTGGTGGTGGAGGGTGTGG+TGG | 0.299929 | 3_3:+78401325 | None:intergenic |
| GGAAGGAGTGGTGGTGGTGG+AGG | 0.314330 | 3_3:+78401316 | None:intergenic |
| GATCTTGATCAGTTATATAT+TGG | 0.317167 | 3_3:-78401228 | Msa0475290:CDS |
| GAAACTTTCTGTTAAGGTTA+AGG | 0.337776 | 3_3:-78401435 | Msa0475290:CDS |
| TGTTGAAAGCGTATAGATAA+AGG | 0.339435 | 3_3:+78400841 | None:intergenic |
| TACTTCATATGTGCTGTTCC+TGG | 0.349993 | 3_3:-78401476 | Msa0475290:CDS |
| GATAAATCAGGTTGGGCAAT+TGG | 0.365257 | 3_3:-78401853 | Msa0475290:CDS |
| GACTATAAATCATGCACAAC+TGG | 0.368543 | 3_3:-78401563 | Msa0475290:CDS |
| GTAGTATTAATTAGTAATCT+AGG | 0.376294 | 3_3:-78401079 | Msa0475290:three_prime_UTR |
| ACTATGACAGTGTTCAACTA+TGG | 0.385966 | 3_3:-78401620 | Msa0475290:intron |
| TACAAGAGCCTCCATAAATC+TGG | 0.389722 | 3_3:+78401099 | None:intergenic |
| GAAGGAGTGGTGGTGGTGGA+GGG | 0.390042 | 3_3:+78401317 | None:intergenic |
| TGTGGAAGGAGTGGTGGTGG+TGG | 0.402692 | 3_3:+78401313 | None:intergenic |
| TGAGGATATTGCTGTGATAA+TGG | 0.412201 | 3_3:+78402032 | None:intergenic |
| AAACAAAAGTTTGTTTAAAA+GGG | 0.415988 | 3_3:-78402114 | None:intergenic |
| AGTAGATAATAATGTGAAAA+GGG | 0.424945 | 3_3:+78401146 | None:intergenic |
| TGGCATGAAACTTTCTGTTA+AGG | 0.430118 | 3_3:-78401441 | Msa0475290:CDS |
| TGTGGTGGTGGTTGCAGCAG+GGG | 0.433694 | 3_3:+78401340 | None:intergenic |
| TAGTAGATAATAATGTGAAA+AGG | 0.436826 | 3_3:+78401145 | None:intergenic |
| TCCTGCTTTCTTGAGAGGGA+TGG | 0.445617 | 3_3:+78401505 | None:intergenic |
| AACCATGGAAGCACTGCCTC+TGG | 0.445987 | 3_3:+78401175 | None:intergenic |
| GGCCAGAGGCAGTGCTTCCA+TGG | 0.449052 | 3_3:-78401177 | Msa0475290:three_prime_UTR |
| CCGTTCACTATCTCTTAAGA+TGG | 0.450951 | 3_3:-78401962 | Msa0475290:exon |
| TCTGCAACACCATCACCATC+AGG | 0.461815 | 3_3:-78401386 | Msa0475290:CDS |
| GTGTGGTGGTGGTTGCAGCA+GGG | 0.463658 | 3_3:+78401339 | None:intergenic |
| GATTTGAGTATGTTCTCTCT+TGG | 0.463980 | 3_3:-78400868 | Msa0475290:three_prime_UTR |
| AGAGATAGTGAACGGAAAGC+TGG | 0.469761 | 3_3:+78401970 | None:intergenic |
| ATGCCACCTGTGCAATGTCC+AGG | 0.481287 | 3_3:+78401458 | None:intergenic |
| GTGTTCCTGCTTTCTTGAGA+GGG | 0.482705 | 3_3:+78401501 | None:intergenic |
| TGTGTTCCTGCTTTCTTGAG+AGG | 0.493116 | 3_3:+78401500 | None:intergenic |
| TTTCTTGAGAGGGATGGTTG+TGG | 0.493786 | 3_3:+78401511 | None:intergenic |
| CACACCGTTGGAGATAAATC+AGG | 0.494660 | 3_3:-78401865 | Msa0475290:CDS |
| GGCTAGTGACAAAACATTTG+CGG | 0.495560 | 3_3:-78401812 | Msa0475290:CDS |
| TTTGCGGTTGGTGACAGTCT+TGG | 0.500707 | 3_3:-78401796 | Msa0475290:intron |
| TCTAAAGGAAGGAGGCTATG+AGG | 0.511510 | 3_3:+78402014 | None:intergenic |
| CGTTGGAGATAAATCAGGTT+GGG | 0.514147 | 3_3:-78401860 | Msa0475290:CDS |
| GGTTGCAGCAGGGGTGCCAT+CGG | 0.524569 | 3_3:+78401349 | None:intergenic |
| AAGAAGCCTAAAATCAAAGA+AGG | 0.528032 | 3_3:+78401928 | None:intergenic |
| TATAATTGCAAGCAAAGAAG+AGG | 0.528967 | 3_3:+78402065 | None:intergenic |
| CTTGCAACTGTCCACACCGT+TGG | 0.529565 | 3_3:-78401877 | Msa0475290:CDS |
| TTGTGTGGAAGGAGTGGTGG+TGG | 0.529906 | 3_3:+78401310 | None:intergenic |
| TTGACAACCTATCACAATGA+AGG | 0.548937 | 3_3:-78400937 | Msa0475290:three_prime_UTR |
| GCAGCAGGGGTGCCATCGGA+AGG | 0.553762 | 3_3:+78401353 | None:intergenic |
| ACCATCCCTCTCAAGAAAGC+AGG | 0.564418 | 3_3:-78401506 | Msa0475290:CDS |
| GAACCTTTCCCTGATGGTGA+TGG | 0.566964 | 3_3:+78401377 | None:intergenic |
| GTTCCTGGACATTGCACAGG+TGG | 0.574513 | 3_3:-78401461 | Msa0475290:CDS |
| GAAGGTGAACCTTTCCCTGA+TGG | 0.578557 | 3_3:+78401371 | None:intergenic |
| ACAGTGTTCAACTATGGTGC+TGG | 0.581813 | 3_3:-78401614 | Msa0475290:intron |
| TGATCTATCCAGATTTATGG+AGG | 0.584610 | 3_3:-78401107 | Msa0475290:three_prime_UTR |
| CCTCTGGCCTGACTATATCT+CGG | 0.585149 | 3_3:+78401191 | None:intergenic |
| CCAACCTGATTTATCTCCAA+CGG | 0.588831 | 3_3:+78401861 | None:intergenic |
| GTGTGGACAGTTGCAAGAGT+TGG | 0.591396 | 3_3:+78401883 | None:intergenic |
| AGTGACAAAACATTTGCGGT+TGG | 0.594495 | 3_3:-78401808 | Msa0475290:CDS |
| GCTGTTCCTGGACATTGCAC+AGG | 0.594776 | 3_3:-78401464 | Msa0475290:CDS |
| CACAATGAAGGAAAATGACA+TGG | 0.598978 | 3_3:-78400925 | Msa0475290:three_prime_UTR |
| GATGGTGATGGTGTTGCAGA+AGG | 0.612608 | 3_3:+78401389 | None:intergenic |
| TGAAAAGGGAAAAGAAACCA+TGG | 0.614527 | 3_3:+78401160 | None:intergenic |
| TTGGTTCTGATTATAACACA+TGG | 0.617869 | 3_3:-78401834 | Msa0475290:CDS |
| AGCTGAAGATGCACTTTGTG+TGG | 0.619201 | 3_3:+78401295 | None:intergenic |
| CCGAGATATAGTCAGGCCAG+AGG | 0.619599 | 3_3:-78401191 | Msa0475290:three_prime_UTR |
| ACGGAAAGCTGGAAAACAGA+TGG | 0.622538 | 3_3:+78401981 | None:intergenic |
| CCATCTTAAGAGATAGTGAA+CGG | 0.626253 | 3_3:+78401962 | None:intergenic |
| CTGCAACACCATCACCATCA+GGG | 0.628504 | 3_3:-78401385 | Msa0475290:CDS |
| GAAGATGCACTTTGTGTGGA+AGG | 0.630949 | 3_3:+78401299 | None:intergenic |
| TGCACTTTGTGTGGAAGGAG+TGG | 0.632667 | 3_3:+78401304 | None:intergenic |
| CCGTTGGAGATAAATCAGGT+TGG | 0.633245 | 3_3:-78401861 | Msa0475290:CDS |
| TTGCAAGCAAAGAAGAGGAG+AGG | 0.633584 | 3_3:+78402070 | None:intergenic |
| GGGAAAGGTTCACCTTCCGA+TGG | 0.642087 | 3_3:-78401365 | Msa0475290:CDS |
| ACTTTGTGTGGAAGGAGTGG+TGG | 0.644852 | 3_3:+78401307 | None:intergenic |
| ACACCATCACCATCAGGGAA+AGG | 0.655836 | 3_3:-78401380 | Msa0475290:CDS |
| TGGTTCTGATTATAACACAT+GGG | 0.658992 | 3_3:-78401833 | Msa0475290:CDS |
| CTGATTTATCTCCAACGGTG+TGG | 0.663800 | 3_3:+78401866 | None:intergenic |
| TCAATTAGTACAGACAGTAG+TGG | 0.678569 | 3_3:-78401536 | Msa0475290:CDS |
| CTATGGTGCTGGACACACAG+TGG | 0.764173 | 3_3:-78401603 | Msa0475290:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAGGGAAAAAAAAAACTT+TGG | - | chr3_3:78400746-78400765 | Msa0475290:three_prime_UTR | 20.0% |
| !!! | CTATATTTTTCACTTTTTCA+TGG | - | chr3_3:78401594-78401613 | Msa0475290:CDS | 20.0% |
| !! | AGTAGATAATAATGTGAAAA+GGG | + | chr3_3:78401701-78401720 | None:intergenic | 20.0% |
| !! | TAGTAGATAATAATGTGAAA+AGG | + | chr3_3:78401702-78401721 | None:intergenic | 20.0% |
| !! | GTAGTATTAATTAGTAATCT+AGG | - | chr3_3:78401765-78401784 | Msa0475290:intron | 20.0% |
| !!! | TGTTTGTTTTTTTACTTCTT+TGG | - | chr3_3:78401851-78401870 | Msa0475290:CDS | 20.0% |
| !!! | GTTTGTTTTTTTACTTCTTT+GGG | - | chr3_3:78401852-78401871 | Msa0475290:CDS | 20.0% |
| !!! | TCAATTCAATTTTTTTTAGG+TGG | - | chr3_3:78401875-78401894 | Msa0475290:CDS | 20.0% |
| !!! | TGCATTTTAGACATTATTTT+AGG | + | chr3_3:78401951-78401970 | None:intergenic | 20.0% |
| !! | GTTGAAAATTTAAATGAGTT+TGG | + | chr3_3:78402040-78402059 | None:intergenic | 20.0% |
| !!! | ACTCATTTAAATTTTCAACA+TGG | - | chr3_3:78402041-78402060 | Msa0475290:five_prime_UTR | 20.0% |
| !! | AATTCAAACAGAAGATTATT+AGG | - | chr3_3:78402104-78402123 | Msa0475290:five_prime_UTR | 20.0% |
| !! | AAAAGGGAAAAAAAAAACTT+TGG | - | chr3_3:78400746-78400765 | Msa0475290:three_prime_UTR | 20.0% |
| !!! | CTATATTTTTCACTTTTTCA+TGG | - | chr3_3:78401594-78401613 | Msa0475290:CDS | 20.0% |
| !! | AGTAGATAATAATGTGAAAA+GGG | + | chr3_3:78401701-78401720 | None:intergenic | 20.0% |
| !! | TAGTAGATAATAATGTGAAA+AGG | + | chr3_3:78401702-78401721 | None:intergenic | 20.0% |
| !! | GTAGTATTAATTAGTAATCT+AGG | - | chr3_3:78401765-78401784 | Msa0475290:intron | 20.0% |
| !!! | TGTTTGTTTTTTTACTTCTT+TGG | - | chr3_3:78401851-78401870 | Msa0475290:CDS | 20.0% |
| !!! | GTTTGTTTTTTTACTTCTTT+GGG | - | chr3_3:78401852-78401871 | Msa0475290:CDS | 20.0% |
| !!! | TCAATTCAATTTTTTTTAGG+TGG | - | chr3_3:78401875-78401894 | Msa0475290:CDS | 20.0% |
| !!! | TGCATTTTAGACATTATTTT+AGG | + | chr3_3:78401951-78401970 | None:intergenic | 20.0% |
| !! | GTTGAAAATTTAAATGAGTT+TGG | + | chr3_3:78402040-78402059 | None:intergenic | 20.0% |
| !!! | ACTCATTTAAATTTTCAACA+TGG | - | chr3_3:78402041-78402060 | Msa0475290:five_prime_UTR | 20.0% |
| !! | AATTCAAACAGAAGATTATT+AGG | - | chr3_3:78402104-78402123 | Msa0475290:five_prime_UTR | 20.0% |
| !!! | TCTAATCCTTCTTTGATTTT+AGG | - | chr3_3:78400910-78400929 | Msa0475290:three_prime_UTR | 25.0% |
| ! | CTTCTTCTTAGCAATTAATA+TGG | - | chr3_3:78400933-78400952 | Msa0475290:three_prime_UTR | 25.0% |
| ! | TTACATAGGTTTGTAAATTG+TGG | + | chr3_3:78401200-78401219 | None:intergenic | 25.0% |
| ! | GTGAAAAATATAGCAACAAT+TGG | + | chr3_3:78401587-78401606 | None:intergenic | 25.0% |
| ! | GATCTTGATCAGTTATATAT+TGG | - | chr3_3:78401616-78401635 | Msa0475290:intron | 25.0% |
| !!! | GGGTCAATTCAATTTTTTTT+AGG | - | chr3_3:78401872-78401891 | Msa0475290:CDS | 25.0% |
| !!! | AATTTTTTTTAGGTGGTAGT+GGG | - | chr3_3:78401882-78401901 | Msa0475290:CDS | 25.0% |
| !!! | TCTAATCCTTCTTTGATTTT+AGG | - | chr3_3:78400910-78400929 | Msa0475290:three_prime_UTR | 25.0% |
| ! | CTTCTTCTTAGCAATTAATA+TGG | - | chr3_3:78400933-78400952 | Msa0475290:three_prime_UTR | 25.0% |
| ! | TTACATAGGTTTGTAAATTG+TGG | + | chr3_3:78401200-78401219 | None:intergenic | 25.0% |
| ! | GTGAAAAATATAGCAACAAT+TGG | + | chr3_3:78401587-78401606 | None:intergenic | 25.0% |
| ! | GATCTTGATCAGTTATATAT+TGG | - | chr3_3:78401616-78401635 | Msa0475290:intron | 25.0% |
| !!! | GGGTCAATTCAATTTTTTTT+AGG | - | chr3_3:78401872-78401891 | Msa0475290:CDS | 25.0% |
| !!! | AATTTTTTTTAGGTGGTAGT+GGG | - | chr3_3:78401882-78401901 | Msa0475290:CDS | 25.0% |
| TATAATTGCAAGCAAAGAAG+AGG | + | chr3_3:78400782-78400801 | None:intergenic | 30.0% | |
| !!! | ATGTTTTTTCTAAAGGAAGG+AGG | + | chr3_3:78400841-78400860 | None:intergenic | 30.0% |
| !!! | GCTATGTTTTTTCTAAAGGA+AGG | + | chr3_3:78400844-78400863 | None:intergenic | 30.0% |
| !!! | GATGGCTATGTTTTTTCTAA+AGG | + | chr3_3:78400848-78400867 | None:intergenic | 30.0% |
| AAGAAGCCTAAAATCAAAGA+AGG | + | chr3_3:78400919-78400938 | None:intergenic | 30.0% | |
| !! | TTGGTTCTGATTATAACACA+TGG | - | chr3_3:78401010-78401029 | Msa0475290:three_prime_UTR | 30.0% |
| !! | TGGTTCTGATTATAACACAT+GGG | - | chr3_3:78401011-78401030 | Msa0475290:three_prime_UTR | 30.0% |
| CTGTCATAGTAAAGTTACAT+AGG | + | chr3_3:78401214-78401233 | None:intergenic | 30.0% | |
| GAAACTTTCTGTTAAGGTTA+AGG | - | chr3_3:78401409-78401428 | Msa0475290:CDS | 30.0% | |
| ! | TAATTTTCCGAGATATAGTC+AGG | - | chr3_3:78401646-78401665 | Msa0475290:intron | 30.0% |
| GTTTGATCTATCCAGATTTA+TGG | - | chr3_3:78401734-78401753 | Msa0475290:intron | 30.0% | |
| ! | TTTTGTGCTTGAATGATTAC+TGG | - | chr3_3:78401818-78401837 | Msa0475290:CDS | 30.0% |
| !!! | CAATTTTTTTTAGGTGGTAG+TGG | - | chr3_3:78401881-78401900 | Msa0475290:CDS | 30.0% |
| ! | TCATTTTCCTTCATTGTGAT+AGG | + | chr3_3:78401917-78401936 | None:intergenic | 30.0% |
| ! | TGTTGAAAGCGTATAGATAA+AGG | + | chr3_3:78402006-78402025 | None:intergenic | 30.0% |
| TATAATTGCAAGCAAAGAAG+AGG | + | chr3_3:78400782-78400801 | None:intergenic | 30.0% | |
| !!! | ATGTTTTTTCTAAAGGAAGG+AGG | + | chr3_3:78400841-78400860 | None:intergenic | 30.0% |
| !!! | GCTATGTTTTTTCTAAAGGA+AGG | + | chr3_3:78400844-78400863 | None:intergenic | 30.0% |
| !!! | GATGGCTATGTTTTTTCTAA+AGG | + | chr3_3:78400848-78400867 | None:intergenic | 30.0% |
| AAGAAGCCTAAAATCAAAGA+AGG | + | chr3_3:78400919-78400938 | None:intergenic | 30.0% | |
| !! | TTGGTTCTGATTATAACACA+TGG | - | chr3_3:78401010-78401029 | Msa0475290:three_prime_UTR | 30.0% |
| !! | TGGTTCTGATTATAACACAT+GGG | - | chr3_3:78401011-78401030 | Msa0475290:three_prime_UTR | 30.0% |
| CTGTCATAGTAAAGTTACAT+AGG | + | chr3_3:78401214-78401233 | None:intergenic | 30.0% | |
| GAAACTTTCTGTTAAGGTTA+AGG | - | chr3_3:78401409-78401428 | Msa0475290:CDS | 30.0% | |
| ! | TAATTTTCCGAGATATAGTC+AGG | - | chr3_3:78401646-78401665 | Msa0475290:intron | 30.0% |
| GTTTGATCTATCCAGATTTA+TGG | - | chr3_3:78401734-78401753 | Msa0475290:intron | 30.0% | |
| ! | TTTTGTGCTTGAATGATTAC+TGG | - | chr3_3:78401818-78401837 | Msa0475290:CDS | 30.0% |
| !!! | CAATTTTTTTTAGGTGGTAG+TGG | - | chr3_3:78401881-78401900 | Msa0475290:CDS | 30.0% |
| ! | TCATTTTCCTTCATTGTGAT+AGG | + | chr3_3:78401917-78401936 | None:intergenic | 30.0% |
| ! | TGTTGAAAGCGTATAGATAA+AGG | + | chr3_3:78402006-78402025 | None:intergenic | 30.0% |
| TGAGGATATTGCTGTGATAA+TGG | + | chr3_3:78400815-78400834 | None:intergenic | 35.0% | |
| CCATCTTAAGAGATAGTGAA+CGG | + | chr3_3:78400885-78400904 | None:intergenic | 35.0% | |
| ACTATGACAGTGTTCAACTA+TGG | - | chr3_3:78401224-78401243 | Msa0475290:CDS | 35.0% | |
| GACTATAAATCATGCACAAC+TGG | - | chr3_3:78401281-78401300 | Msa0475290:CDS | 35.0% | |
| TCAATTAGTACAGACAGTAG+TGG | - | chr3_3:78401308-78401327 | Msa0475290:CDS | 35.0% | |
| TGGCATGAAACTTTCTGTTA+AGG | - | chr3_3:78401403-78401422 | Msa0475290:CDS | 35.0% | |
| TGAAAAGGGAAAAGAAACCA+TGG | + | chr3_3:78401687-78401706 | None:intergenic | 35.0% | |
| TGATCTATCCAGATTTATGG+AGG | - | chr3_3:78401737-78401756 | Msa0475290:intron | 35.0% | |
| TTGACAACCTATCACAATGA+AGG | - | chr3_3:78401907-78401926 | Msa0475290:CDS | 35.0% | |
| CACAATGAAGGAAAATGACA+TGG | - | chr3_3:78401919-78401938 | Msa0475290:CDS | 35.0% | |
| GATTTGAGTATGTTCTCTCT+TGG | - | chr3_3:78401976-78401995 | Msa0475290:five_prime_UTR | 35.0% | |
| TGAGGATATTGCTGTGATAA+TGG | + | chr3_3:78400815-78400834 | None:intergenic | 35.0% | |
| CCATCTTAAGAGATAGTGAA+CGG | + | chr3_3:78400885-78400904 | None:intergenic | 35.0% | |
| ACTATGACAGTGTTCAACTA+TGG | - | chr3_3:78401224-78401243 | Msa0475290:CDS | 35.0% | |
| GACTATAAATCATGCACAAC+TGG | - | chr3_3:78401281-78401300 | Msa0475290:CDS | 35.0% | |
| TCAATTAGTACAGACAGTAG+TGG | - | chr3_3:78401308-78401327 | Msa0475290:CDS | 35.0% | |
| TGGCATGAAACTTTCTGTTA+AGG | - | chr3_3:78401403-78401422 | Msa0475290:CDS | 35.0% | |
| TGAAAAGGGAAAAGAAACCA+TGG | + | chr3_3:78401687-78401706 | None:intergenic | 35.0% | |
| TGATCTATCCAGATTTATGG+AGG | - | chr3_3:78401737-78401756 | Msa0475290:intron | 35.0% | |
| TTGACAACCTATCACAATGA+AGG | - | chr3_3:78401907-78401926 | Msa0475290:CDS | 35.0% | |
| CACAATGAAGGAAAATGACA+TGG | - | chr3_3:78401919-78401938 | Msa0475290:CDS | 35.0% | |
| GATTTGAGTATGTTCTCTCT+TGG | - | chr3_3:78401976-78401995 | Msa0475290:five_prime_UTR | 35.0% | |
| CCGTTCACTATCTCTTAAGA+TGG | - | chr3_3:78400882-78400901 | Msa0475290:three_prime_UTR | 40.0% | |
| CCAACCTGATTTATCTCCAA+CGG | + | chr3_3:78400986-78401005 | None:intergenic | 40.0% | |
| CGTTGGAGATAAATCAGGTT+GGG | - | chr3_3:78400984-78401003 | Msa0475290:three_prime_UTR | 40.0% | |
| !! | GATAAATCAGGTTGGGCAAT+TGG | - | chr3_3:78400991-78401010 | Msa0475290:three_prime_UTR | 40.0% |
| GGCTAGTGACAAAACATTTG+CGG | - | chr3_3:78401032-78401051 | Msa0475290:three_prime_UTR | 40.0% | |
| AGTGACAAAACATTTGCGGT+TGG | - | chr3_3:78401036-78401055 | Msa0475290:three_prime_UTR | 40.0% | |
| ! | TACTTCATATGTGCTGTTCC+TGG | - | chr3_3:78401368-78401387 | Msa0475290:CDS | 40.0% |
| TACAAGAGCCTCCATAAATC+TGG | + | chr3_3:78401748-78401767 | None:intergenic | 40.0% | |
| CCGTTCACTATCTCTTAAGA+TGG | - | chr3_3:78400882-78400901 | Msa0475290:three_prime_UTR | 40.0% | |
| CCAACCTGATTTATCTCCAA+CGG | + | chr3_3:78400986-78401005 | None:intergenic | 40.0% | |
| CGTTGGAGATAAATCAGGTT+GGG | - | chr3_3:78400984-78401003 | Msa0475290:three_prime_UTR | 40.0% | |
| !! | GATAAATCAGGTTGGGCAAT+TGG | - | chr3_3:78400991-78401010 | Msa0475290:three_prime_UTR | 40.0% |
| GGCTAGTGACAAAACATTTG+CGG | - | chr3_3:78401032-78401051 | Msa0475290:three_prime_UTR | 40.0% | |
| AGTGACAAAACATTTGCGGT+TGG | - | chr3_3:78401036-78401055 | Msa0475290:three_prime_UTR | 40.0% | |
| ! | TACTTCATATGTGCTGTTCC+TGG | - | chr3_3:78401368-78401387 | Msa0475290:CDS | 40.0% |
| TACAAGAGCCTCCATAAATC+TGG | + | chr3_3:78401748-78401767 | None:intergenic | 40.0% | |
| TTGCAAGCAAAGAAGAGGAG+AGG | + | chr3_3:78400777-78400796 | None:intergenic | 45.0% | |
| TCTAAAGGAAGGAGGCTATG+AGG | + | chr3_3:78400833-78400852 | None:intergenic | 45.0% | |
| ACGGAAAGCTGGAAAACAGA+TGG | + | chr3_3:78400866-78400885 | None:intergenic | 45.0% | |
| AGAGATAGTGAACGGAAAGC+TGG | + | chr3_3:78400877-78400896 | None:intergenic | 45.0% | |
| CTGATTTATCTCCAACGGTG+TGG | + | chr3_3:78400981-78401000 | None:intergenic | 45.0% | |
| CACACCGTTGGAGATAAATC+AGG | - | chr3_3:78400979-78400998 | Msa0475290:three_prime_UTR | 45.0% | |
| CCGTTGGAGATAAATCAGGT+TGG | - | chr3_3:78400983-78401002 | Msa0475290:three_prime_UTR | 45.0% | |
| ACAGTGTTCAACTATGGTGC+TGG | - | chr3_3:78401230-78401249 | Msa0475290:CDS | 45.0% | |
| TTTCTTGAGAGGGATGGTTG+TGG | + | chr3_3:78401336-78401355 | None:intergenic | 45.0% | |
| GTGTTCCTGCTTTCTTGAGA+GGG | + | chr3_3:78401346-78401365 | None:intergenic | 45.0% | |
| TGTGTTCCTGCTTTCTTGAG+AGG | + | chr3_3:78401347-78401366 | None:intergenic | 45.0% | |
| GAAGATGCACTTTGTGTGGA+AGG | + | chr3_3:78401548-78401567 | None:intergenic | 45.0% | |
| AGCTGAAGATGCACTTTGTG+TGG | + | chr3_3:78401552-78401571 | None:intergenic | 45.0% | |
| TTGCAAGCAAAGAAGAGGAG+AGG | + | chr3_3:78400777-78400796 | None:intergenic | 45.0% | |
| TCTAAAGGAAGGAGGCTATG+AGG | + | chr3_3:78400833-78400852 | None:intergenic | 45.0% | |
| ACGGAAAGCTGGAAAACAGA+TGG | + | chr3_3:78400866-78400885 | None:intergenic | 45.0% | |
| AGAGATAGTGAACGGAAAGC+TGG | + | chr3_3:78400877-78400896 | None:intergenic | 45.0% | |
| CTGATTTATCTCCAACGGTG+TGG | + | chr3_3:78400981-78401000 | None:intergenic | 45.0% | |
| CACACCGTTGGAGATAAATC+AGG | - | chr3_3:78400979-78400998 | Msa0475290:three_prime_UTR | 45.0% | |
| CCGTTGGAGATAAATCAGGT+TGG | - | chr3_3:78400983-78401002 | Msa0475290:three_prime_UTR | 45.0% | |
| ACAGTGTTCAACTATGGTGC+TGG | - | chr3_3:78401230-78401249 | Msa0475290:CDS | 45.0% | |
| TTTCTTGAGAGGGATGGTTG+TGG | + | chr3_3:78401336-78401355 | None:intergenic | 45.0% | |
| GTGTTCCTGCTTTCTTGAGA+GGG | + | chr3_3:78401346-78401365 | None:intergenic | 45.0% | |
| TGTGTTCCTGCTTTCTTGAG+AGG | + | chr3_3:78401347-78401366 | None:intergenic | 45.0% | |
| GAAGATGCACTTTGTGTGGA+AGG | + | chr3_3:78401548-78401567 | None:intergenic | 45.0% | |
| AGCTGAAGATGCACTTTGTG+TGG | + | chr3_3:78401552-78401571 | None:intergenic | 45.0% | |
| GTGTGGACAGTTGCAAGAGT+TGG | + | chr3_3:78400964-78400983 | None:intergenic | 50.0% | |
| !! | TTTGCGGTTGGTGACAGTCT+TGG | - | chr3_3:78401048-78401067 | Msa0475290:three_prime_UTR | 50.0% |
| ACCATCCCTCTCAAGAAAGC+AGG | - | chr3_3:78401338-78401357 | Msa0475290:CDS | 50.0% | |
| TCCTGCTTTCTTGAGAGGGA+TGG | + | chr3_3:78401342-78401361 | None:intergenic | 50.0% | |
| !! | GATGGTGATGGTGTTGCAGA+AGG | + | chr3_3:78401458-78401477 | None:intergenic | 50.0% |
| TCTGCAACACCATCACCATC+AGG | - | chr3_3:78401458-78401477 | Msa0475290:CDS | 50.0% | |
| CTGCAACACCATCACCATCA+GGG | - | chr3_3:78401459-78401478 | Msa0475290:CDS | 50.0% | |
| ACACCATCACCATCAGGGAA+AGG | - | chr3_3:78401464-78401483 | Msa0475290:CDS | 50.0% | |
| ! | GAACCTTTCCCTGATGGTGA+TGG | + | chr3_3:78401470-78401489 | None:intergenic | 50.0% |
| GAAGGTGAACCTTTCCCTGA+TGG | + | chr3_3:78401476-78401495 | None:intergenic | 50.0% | |
| ACTTTGTGTGGAAGGAGTGG+TGG | + | chr3_3:78401540-78401559 | None:intergenic | 50.0% | |
| TGCACTTTGTGTGGAAGGAG+TGG | + | chr3_3:78401543-78401562 | None:intergenic | 50.0% | |
| CCTCTGGCCTGACTATATCT+CGG | + | chr3_3:78401656-78401675 | None:intergenic | 50.0% | |
| GTGTGGACAGTTGCAAGAGT+TGG | + | chr3_3:78400964-78400983 | None:intergenic | 50.0% | |
| !! | TTTGCGGTTGGTGACAGTCT+TGG | - | chr3_3:78401048-78401067 | Msa0475290:three_prime_UTR | 50.0% |
| ACCATCCCTCTCAAGAAAGC+AGG | - | chr3_3:78401338-78401357 | Msa0475290:CDS | 50.0% | |
| TCCTGCTTTCTTGAGAGGGA+TGG | + | chr3_3:78401342-78401361 | None:intergenic | 50.0% | |
| !! | GATGGTGATGGTGTTGCAGA+AGG | + | chr3_3:78401458-78401477 | None:intergenic | 50.0% |
| TCTGCAACACCATCACCATC+AGG | - | chr3_3:78401458-78401477 | Msa0475290:CDS | 50.0% | |
| CTGCAACACCATCACCATCA+GGG | - | chr3_3:78401459-78401478 | Msa0475290:CDS | 50.0% | |
| ACACCATCACCATCAGGGAA+AGG | - | chr3_3:78401464-78401483 | Msa0475290:CDS | 50.0% | |
| ! | GAACCTTTCCCTGATGGTGA+TGG | + | chr3_3:78401470-78401489 | None:intergenic | 50.0% |
| GAAGGTGAACCTTTCCCTGA+TGG | + | chr3_3:78401476-78401495 | None:intergenic | 50.0% | |
| ACTTTGTGTGGAAGGAGTGG+TGG | + | chr3_3:78401540-78401559 | None:intergenic | 50.0% | |
| TGCACTTTGTGTGGAAGGAG+TGG | + | chr3_3:78401543-78401562 | None:intergenic | 50.0% | |
| CCTCTGGCCTGACTATATCT+CGG | + | chr3_3:78401656-78401675 | None:intergenic | 50.0% | |
| CTTGCAACTGTCCACACCGT+TGG | - | chr3_3:78400967-78400986 | Msa0475290:three_prime_UTR | 55.0% | |
| ! | CTATGGTGCTGGACACACAG+TGG | - | chr3_3:78401241-78401260 | Msa0475290:CDS | 55.0% |
| GCTGTTCCTGGACATTGCAC+AGG | - | chr3_3:78401380-78401399 | Msa0475290:CDS | 55.0% | |
| GTTCCTGGACATTGCACAGG+TGG | - | chr3_3:78401383-78401402 | Msa0475290:CDS | 55.0% | |
| ATGCCACCTGTGCAATGTCC+AGG | + | chr3_3:78401389-78401408 | None:intergenic | 55.0% | |
| GGGAAAGGTTCACCTTCCGA+TGG | - | chr3_3:78401479-78401498 | Msa0475290:CDS | 55.0% | |
| TTGTGTGGAAGGAGTGGTGG+TGG | + | chr3_3:78401537-78401556 | None:intergenic | 55.0% | |
| CCGAGATATAGTCAGGCCAG+AGG | - | chr3_3:78401653-78401672 | Msa0475290:intron | 55.0% | |
| !! | AACCATGGAAGCACTGCCTC+TGG | + | chr3_3:78401672-78401691 | None:intergenic | 55.0% |
| CTTGCAACTGTCCACACCGT+TGG | - | chr3_3:78400967-78400986 | Msa0475290:three_prime_UTR | 55.0% | |
| ! | CTATGGTGCTGGACACACAG+TGG | - | chr3_3:78401241-78401260 | Msa0475290:CDS | 55.0% |
| GCTGTTCCTGGACATTGCAC+AGG | - | chr3_3:78401380-78401399 | Msa0475290:CDS | 55.0% | |
| GTTCCTGGACATTGCACAGG+TGG | - | chr3_3:78401383-78401402 | Msa0475290:CDS | 55.0% | |
| ATGCCACCTGTGCAATGTCC+AGG | + | chr3_3:78401389-78401408 | None:intergenic | 55.0% | |
| GGGAAAGGTTCACCTTCCGA+TGG | - | chr3_3:78401479-78401498 | Msa0475290:CDS | 55.0% | |
| TTGTGTGGAAGGAGTGGTGG+TGG | + | chr3_3:78401537-78401556 | None:intergenic | 55.0% | |
| CCGAGATATAGTCAGGCCAG+AGG | - | chr3_3:78401653-78401672 | Msa0475290:intron | 55.0% | |
| !! | AACCATGGAAGCACTGCCTC+TGG | + | chr3_3:78401672-78401691 | None:intergenic | 55.0% |
| !! | TGTGGTGGTGGTTGCAGCAG+GGG | + | chr3_3:78401507-78401526 | None:intergenic | 60.0% |
| !! | GTGTGGTGGTGGTTGCAGCA+GGG | + | chr3_3:78401508-78401527 | None:intergenic | 60.0% |
| !! | GAAGGAGTGGTGGTGGTGGA+GGG | + | chr3_3:78401530-78401549 | None:intergenic | 60.0% |
| !! | TGTGGAAGGAGTGGTGGTGG+TGG | + | chr3_3:78401534-78401553 | None:intergenic | 60.0% |
| !! | TGTGGTGGTGGTTGCAGCAG+GGG | + | chr3_3:78401507-78401526 | None:intergenic | 60.0% |
| !! | GTGTGGTGGTGGTTGCAGCA+GGG | + | chr3_3:78401508-78401527 | None:intergenic | 60.0% |
| !! | GAAGGAGTGGTGGTGGTGGA+GGG | + | chr3_3:78401530-78401549 | None:intergenic | 60.0% |
| !! | TGTGGAAGGAGTGGTGGTGG+TGG | + | chr3_3:78401534-78401553 | None:intergenic | 60.0% |
| !! | GGTTGCAGCAGGGGTGCCAT+CGG | + | chr3_3:78401498-78401517 | None:intergenic | 65.0% |
| !! | GGTGTGGTGGTGGTTGCAGC+AGG | + | chr3_3:78401509-78401528 | None:intergenic | 65.0% |
| !! | AGTGGTGGTGGTGGAGGGTG+TGG | + | chr3_3:78401525-78401544 | None:intergenic | 65.0% |
| !! | GGAAGGAGTGGTGGTGGTGG+AGG | + | chr3_3:78401531-78401550 | None:intergenic | 65.0% |
| GGCCAGAGGCAGTGCTTCCA+TGG | - | chr3_3:78401667-78401686 | Msa0475290:intron | 65.0% | |
| !! | GGTTGCAGCAGGGGTGCCAT+CGG | + | chr3_3:78401498-78401517 | None:intergenic | 65.0% |
| !! | GGTGTGGTGGTGGTTGCAGC+AGG | + | chr3_3:78401509-78401528 | None:intergenic | 65.0% |
| !! | AGTGGTGGTGGTGGAGGGTG+TGG | + | chr3_3:78401525-78401544 | None:intergenic | 65.0% |
| !! | GGAAGGAGTGGTGGTGGTGG+AGG | + | chr3_3:78401531-78401550 | None:intergenic | 65.0% |
| GGCCAGAGGCAGTGCTTCCA+TGG | - | chr3_3:78401667-78401686 | Msa0475290:intron | 65.0% | |
| !! | GCAGCAGGGGTGCCATCGGA+AGG | + | chr3_3:78401494-78401513 | None:intergenic | 70.0% |
| !! | GGTGGTGGAGGGTGTGGTGG+TGG | + | chr3_3:78401519-78401538 | None:intergenic | 70.0% |
| !! | GGTGGTGGTGGAGGGTGTGG+TGG | + | chr3_3:78401522-78401541 | None:intergenic | 70.0% |
| !! | GCAGCAGGGGTGCCATCGGA+AGG | + | chr3_3:78401494-78401513 | None:intergenic | 70.0% |
| !! | GGTGGTGGAGGGTGTGGTGG+TGG | + | chr3_3:78401519-78401538 | None:intergenic | 70.0% |
| !! | GGTGGTGGTGGAGGGTGTGG+TGG | + | chr3_3:78401522-78401541 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 78400734 | 78402132 | 78400734 | ID=Msa0475290;Name=Msa0475290 |
| chr3_3 | mRNA | 78400734 | 78402132 | 78400734 | ID=Msa0475290-mRNA-1;Parent=Msa0475290;Name=Msa0475290-mRNA-1;_AED=0.03;_eAED=0.03;_QI=167|1|1|1|1|1|2|489|192 |
| chr3_3 | exon | 78400734 | 78401632 | 78400734 | ID=Msa0475290-mRNA-1:exon:21142;Parent=Msa0475290-mRNA-1 |
| chr3_3 | exon | 78401797 | 78402132 | 78401797 | ID=Msa0475290-mRNA-1:exon:21141;Parent=Msa0475290-mRNA-1 |
| chr3_3 | five_prime_UTR | 78401966 | 78402132 | 78401966 | ID=Msa0475290-mRNA-1:five_prime_utr;Parent=Msa0475290-mRNA-1 |
| chr3_3 | CDS | 78401797 | 78401965 | 78401797 | ID=Msa0475290-mRNA-1:cds;Parent=Msa0475290-mRNA-1 |
| chr3_3 | CDS | 78401223 | 78401632 | 78401223 | ID=Msa0475290-mRNA-1:cds;Parent=Msa0475290-mRNA-1 |
| chr3_3 | three_prime_UTR | 78400734 | 78401222 | 78400734 | ID=Msa0475290-mRNA-1:three_prime_utr;Parent=Msa0475290-mRNA-1 |
| Gene Sequence |
| Protein sequence |
