AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0380460

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0380460 MtrunA17_Chr3g0133891 95.354 947 24 1 1 927 1 947 0.0 1779
Msa0380460 MtrunA17_Chr1g0153431 66.057 766 236 7 173 927 167 919 0.0 906
Msa0380460 MtrunA17_Chr8g0369191 51.982 681 265 13 256 925 6 635 3.17e-171 512
Msa0380460 MtrunA17_Chr3g0102681 29.412 595 386 8 249 836 4 571 1.45e-33 138
Msa0380460 MtrunA17_Chr4g0013151 34.091 264 169 2 574 836 229 488 1.40e-26 116
Msa0380460 MtrunA17_Chr7g0244501 31.047 277 187 2 575 851 177 449 1.55e-26 115
Msa0380460 MtrunA17_Chr2g0290651 28.718 585 349 14 271 831 22 562 2.24e-26 115
Msa0380460 MtrunA17_Chr5g0446731 28.892 668 414 16 269 921 21 642 3.43e-23 105
Msa0380460 MtrunA17_Chr3g0078801 29.630 594 373 13 269 846 21 585 5.47e-20 95.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0380460 AT2G26570.1 67.311 673 209 3 252 924 146 807 0.0 838
Msa0380460 AT2G26570.2 67.311 673 209 3 252 924 146 807 0.0 838
Msa0380460 AT4G33390.1 61.061 660 226 6 264 922 149 778 0.0 692
Msa0380460 AT5G42880.1 48.817 676 303 7 251 925 118 751 1.38e-175 528
Msa0380460 AT1G45545.1 47.904 668 267 10 270 925 154 752 2.40e-169 512
Msa0380460 AT1G45545.2 47.904 668 267 10 270 925 155 753 2.45e-169 512
Msa0380460 AT5G55860.1 27.697 686 423 15 253 922 6 634 3.71e-21 99.8
Msa0380460 AT2G38370.2 28.173 323 199 5 519 841 113 402 1.33e-15 81.6
Msa0380460 AT2G38370.1 28.173 323 199 5 519 841 96 385 2.21e-15 80.9
Msa0380460 AT1G12150.2 23.902 569 378 8 269 829 19 540 7.67e-11 66.2
Msa0380460 AT1G12150.1 23.902 569 378 8 269 829 19 540 7.67e-11 66.2

Find 232 sgRNAs with CRISPR-Local

Find 455 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TACCTCCTCAAGTTCCTTTC+TGG 0.088150 3_1:-82117856 None:intergenic
CAATGCACATAATTTCAATT+TGG 0.147472 3_1:-82118928 None:intergenic
CACCTGATTAGGAAGTAATT+AGG 0.198633 3_1:-82113059 None:intergenic
AGCTAAATTAACTGTTTATA+TGG 0.204674 3_1:+82117731 Msa0380460:CDS
AACAAGCGACCAGCTAAATT+TGG 0.239282 3_1:+82114873 Msa0380460:CDS
CAGTGGGGTTACACTTTCTT+TGG 0.239820 3_1:+82118364 Msa0380460:CDS
TATCTTGCCTCCCATCCTTT+TGG 0.256194 3_1:+82118963 Msa0380460:three_prime_UTR
GCTGTTAGTTGCAGCTTCTT+TGG 0.261793 3_1:-82118110 None:intergenic
TTTCGGGAAGGTTCCTGTTC+TGG 0.262334 3_1:+82119459 Msa0380460:three_prime_UTR
TCAATCAATATAGTGAGTTT+TGG 0.270356 3_1:-82119314 None:intergenic
CACTGACTTCTCTACTTCCT+TGG 0.274617 3_1:-82117466 None:intergenic
AAGGAAGCTGTTTCTAAGTT+TGG 0.278467 3_1:+82115141 Msa0380460:CDS
TTGTGAGGACTTAAGAAAAT+AGG 0.279719 3_1:+82119119 Msa0380460:three_prime_UTR
CTTGAACATCCTCCATTATA+AGG 0.281721 3_1:-82114294 None:intergenic
AAGTTCGGTCATTTGTTCTT+TGG 0.298214 3_1:-82118087 None:intergenic
TGAGATTGTGGAAAAGTAAA+AGG 0.304092 3_1:-82112960 None:intergenic
CTCACTTGATGGATGGTATA+CGG 0.304973 3_1:+82119080 Msa0380460:three_prime_UTR
CGGAGAAAGGCTGGTGAGTC+TGG 0.309159 3_1:+82118644 Msa0380460:CDS
TTTGGCAACACTGATAATTC+AGG 0.310576 3_1:-82114760 None:intergenic
AATGCACATAATTTCAATTT+GGG 0.317639 3_1:-82118927 None:intergenic
GAGATCAAGATTCACTCAAT+TGG 0.319924 3_1:+82117592 Msa0380460:CDS
TACATCAACCTGCTTGGTTT+GGG 0.329348 3_1:-82115076 None:intergenic
TTACATCAACCTGCTTGGTT+TGG 0.331984 3_1:-82115077 None:intergenic
TGCATCTCTAGAAGCTGAAT+TGG 0.337620 3_1:+82118016 Msa0380460:CDS
CTCTGACCAGCATGAATTGC+AGG 0.342985 3_1:+82114930 Msa0380460:CDS
CTCCCGAGCCCTCCTTATAA+TGG 0.343343 3_1:+82114282 Msa0380460:exon
AATGAAGTAAAGATGTCTTC+TGG 0.344172 3_1:+82115036 Msa0380460:CDS
AAGGCAAAGGAAGGTAAATT+AGG 0.350324 3_1:+82118578 Msa0380460:CDS
AGGAAATTCAAACAGAATAA+TGG 0.351259 3_1:-82119528 None:intergenic
CGTTGCAGCCAAGGCACAAC+TGG 0.354618 3_1:+82117299 Msa0380460:CDS
AACAGCTGAAGAGGCTAATC+AGG 0.354780 3_1:+82118127 Msa0380460:CDS
TCTCCGTTACTAAGTGGAAT+TGG 0.361118 3_1:-82114700 None:intergenic
ACATTTGCTCATTGATTCTC+TGG 0.363605 3_1:-82117647 None:intergenic
GTCACATCCACTGTATCATT+TGG 0.367014 3_1:-82114847 None:intergenic
ACTTCGCAAAACACCTGATT+AGG 0.370968 3_1:-82113070 None:intergenic
GTGCAGGATTAGTTGCATAC+TGG 0.374116 3_1:-82118745 None:intergenic
ATTGGATTATACTCACTTGA+TGG 0.379193 3_1:+82119069 Msa0380460:three_prime_UTR
ATATTGATACTAATTATTAG+AGG 0.380745 3_1:-82112995 None:intergenic
CTTCAGTTTGTGCTCTCTCT+AGG 0.384605 3_1:-82117197 None:intergenic
TAACTCTTCTATAAGTCTCT+TGG 0.385789 3_1:-82117166 None:intergenic
AAAGGATCTCAAATCTAAAC+TGG 0.393667 3_1:+82117677 Msa0380460:CDS
TGCTGGTCAGAGATATCTTC+TGG 0.394578 3_1:-82114919 None:intergenic
TTGCAGCTTCTTTGGAAGTT+CGG 0.399807 3_1:-82118102 None:intergenic
AGCACAAACTGAAGAGCAAC+AGG 0.400039 3_1:+82117206 Msa0380460:CDS
TGCATGGAATATACACATAA+AGG 0.407863 3_1:+82119397 Msa0380460:three_prime_UTR
AGCAGCTGCAATCCTTGTAT+TGG 0.408027 3_1:-82118435 None:intergenic
CACCTTCAACCGTTGATGTT+CGG 0.408491 3_1:-82113178 None:intergenic
CACGGTGATCGATTTGTGTA+TGG 0.409462 3_1:+82119038 Msa0380460:three_prime_UTR
AGCAACTTCCAGTTGTGCCT+TGG 0.410573 3_1:-82117307 None:intergenic
TCCCTAATTACTTCCTAATC+AGG 0.415170 3_1:+82113057 Msa0380460:five_prime_UTR
GTTTGACCATCAGAAACATT+TGG 0.415469 3_1:-82114778 None:intergenic
AAAGAAAAGAAAAGAAAAGA+AGG 0.416352 3_1:-82112930 None:intergenic
ACCTGATTAGGAAGTAATTA+GGG 0.419012 3_1:-82113058 None:intergenic
AATAGCTTTGGTTCAAATGA+AGG 0.419296 3_1:+82118055 Msa0380460:CDS
TACTGGCACAGTACAGCTTT+TGG 0.420919 3_1:-82119015 None:intergenic
GAAAATAGGTTCGTCTATGT+TGG 0.421649 3_1:+82119133 Msa0380460:three_prime_UTR
CACAACTAGTGAACTGTGAA+TGG 0.421857 3_1:-82119364 None:intergenic
AAAACACATTCAAACAAGTC+AGG 0.424040 3_1:+82118899 Msa0380460:CDS
CAGGTTACTTGCAGCTCAAA+AGG 0.424256 3_1:+82118241 Msa0380460:CDS
ATAGAGAGATAGCTGCTAGA+AGG 0.425984 3_1:+82118522 Msa0380460:CDS
TCTGCATGCATATAAGTCTT+CGG 0.426670 3_1:-82118782 None:intergenic
CAAGGTACTTACTCCAGCCT+TGG 0.427633 3_1:-82118213 None:intergenic
GACTGCTCATGCTGCACACT+TGG 0.430032 3_1:+82117533 Msa0380460:CDS
TTGGGAGAAGGAACTTAAAC+AGG 0.433707 3_1:+82117611 Msa0380460:CDS
AATCTTCAACCAAATTTAGC+TGG 0.435466 3_1:-82114882 None:intergenic
ATCATCAAATGATCCAGAAC+AGG 0.443786 3_1:-82119472 None:intergenic
CCTCCATTATAAGGAGGGCT+CGG 0.447164 3_1:-82114285 None:intergenic
TGCAAAGGCTTCTGAAAAGT+TGG 0.447891 3_1:+82118274 Msa0380460:CDS
TTCCTTTCTGGCTGATTCCA+CGG 0.450504 3_1:-82117844 None:intergenic
TTGTGTATGGTTTGACGGAT+TGG 0.455348 3_1:+82119051 Msa0380460:three_prime_UTR
TATTCTGGTTAACCACTCCT+TGG 0.457248 3_1:-82118667 None:intergenic
AGTTGCTAAAGCTAGGTATA+CGG 0.460121 3_1:+82117323 Msa0380460:CDS
CGAATCTAGCGTTGCAGCCA+AGG 0.460134 3_1:+82117290 Msa0380460:CDS
GACTAGATCAGAAATAGCTT+TGG 0.461244 3_1:+82118043 Msa0380460:CDS
AGATCAAGATTCACTCAATT+GGG 0.461638 3_1:+82117593 Msa0380460:CDS
ACTGAAATCCTTCGAGAAGT+TGG 0.462011 3_1:+82118490 Msa0380460:CDS
TCGATTTGTGTATGGTTTGA+CGG 0.462652 3_1:+82119046 Msa0380460:three_prime_UTR
TGCAGGATTAGTTGCATACT+GGG 0.468145 3_1:-82118744 None:intergenic
AAAATAGGTTCGTCTATGTT+GGG 0.475771 3_1:+82119134 Msa0380460:three_prime_UTR
GTGTAGAACAAGAACTTAGA+AGG 0.477088 3_1:+82118600 Msa0380460:CDS
AATCATCTCTTGCCTCGATT+AGG 0.477119 3_1:+82117964 Msa0380460:CDS
GAAGCTGTTTCTAAGTTTGG+AGG 0.479133 3_1:+82115144 Msa0380460:CDS
ATCAACCTGCTTGGTTTGGG+CGG 0.480255 3_1:-82115073 None:intergenic
GAAGCAGAACAAGCCAAGGC+TGG 0.481127 3_1:+82118200 Msa0380460:CDS
GAGGCGCAATCTAGTAGAAC+AGG 0.482497 3_1:+82117047 Msa0380460:intron
TACATCTTTAAAATCAGAAC+TGG 0.483592 3_1:+82117932 Msa0380460:CDS
TTCTGAAGTTGAGGTAGCTA+AGG 0.484672 3_1:+82118460 Msa0380460:CDS
TGAAAATGAGCAACGGAGAA+AGG 0.485253 3_1:+82118631 Msa0380460:CDS
GAGTAAGTACCTTGGAAAGC+AGG 0.485484 3_1:+82118222 Msa0380460:CDS
ATCTGAGTGACTCGAAATGT+TGG 0.487709 3_1:+82118988 Msa0380460:three_prime_UTR
TGAAGAGCAACAGGCAAGAC+AGG 0.487822 3_1:+82117215 Msa0380460:CDS
ACATATATACCTCCACAGTC+TGG 0.487953 3_1:-82115194 None:intergenic
TCTAAACTGGAAGCAGCCTC+TGG 0.489857 3_1:+82117690 Msa0380460:CDS
GGACTTGACAAATATTGTGC+AGG 0.492349 3_1:-82118761 None:intergenic
TGCAGCTCAAAAGGAGATAG+AGG 0.495277 3_1:+82118250 Msa0380460:CDS
GTGATTTGAAGCACTTTGAA+TGG 0.495742 3_1:+82119276 Msa0380460:three_prime_UTR
ATGAAATTAAAGTGAGATTG+TGG 0.499806 3_1:-82112972 None:intergenic
AAATCAAGTACTAAAGGAGC+TGG 0.502391 3_1:+82117137 Msa0380460:CDS
CACTCAGATCTCCAAAAGGA+TGG 0.503255 3_1:-82118974 None:intergenic
AGTAACGGAGAAGTGGAGTC+TGG 0.504133 3_1:+82114712 Msa0380460:CDS
TAGAGAGATAGCTGCTAGAA+GGG 0.509873 3_1:+82118523 Msa0380460:CDS
TCAACCTGCTTGGTTTGGGC+GGG 0.510437 3_1:-82115072 None:intergenic
TTCCGAACATCAACGGTTGA+AGG 0.511277 3_1:+82113176 Msa0380460:five_prime_UTR
ACAAATCGATCACCGTGTAC+TGG 0.512599 3_1:-82119032 None:intergenic
TTCATCTCTATCAGTCACTA+AGG 0.513821 3_1:-82117409 None:intergenic
GGAGGCAGTTACAGCATCCA+AGG 0.516525 3_1:+82117449 Msa0380460:CDS
CAGAAGAGCGAGCCAATACA+AGG 0.517906 3_1:+82118423 Msa0380460:CDS
CTCCATTATAAGGAGGGCTC+GGG 0.518464 3_1:-82114284 None:intergenic
AATGAGCAACGGAGAAAGGC+TGG 0.523536 3_1:+82118635 Msa0380460:CDS
GAAGCAGAGGAACAAAGAAT+AGG 0.523697 3_1:+82117555 Msa0380460:CDS
TTGGTTGAAGATTCTAAACC+AGG 0.523832 3_1:+82114892 Msa0380460:CDS
TCACTATATTGATTGATACT+AGG 0.524588 3_1:+82119321 Msa0380460:three_prime_UTR
TGCTGCACACTTGGAAGCAG+AGG 0.524988 3_1:+82117542 Msa0380460:CDS
CATTCACAGTTCACTAGTTG+TGG 0.530459 3_1:+82119365 Msa0380460:three_prime_UTR
TGGAGGAATTGTCGATTGGA+AGG 0.530992 3_1:+82115161 Msa0380460:CDS
GAGATATCTTCTGGAGCACC+TGG 0.532106 3_1:-82114910 None:intergenic
AGTTACTGAAGAGACACATA+TGG 0.533215 3_1:+82114483 Msa0380460:CDS
AGCAGCTGTGAAAGAAGAGC+TGG 0.533861 3_1:+82117362 Msa0380460:CDS
TCCACTTCTCCGTTACTAAG+TGG 0.535969 3_1:-82114706 None:intergenic
TTGGCAACACTGATAATTCA+GGG 0.536150 3_1:-82114759 None:intergenic
ATGTGGTGGGTTTACCACTT+CGG 0.537990 3_1:-82114656 None:intergenic
TGATGGATCTAATCTGAGGT+AGG 0.538879 3_1:+82112870 None:intergenic
GAAGAAATCGTTGTTCCCAC+GGG 0.541661 3_1:+82118853 Msa0380460:CDS
AGGAAGATTGATTATGTGGT+GGG 0.543145 3_1:-82114669 None:intergenic
AGAAGAAATCGTTGTTCCCA+CGG 0.544605 3_1:+82118852 Msa0380460:CDS
GATTATACTCACTTGATGGA+TGG 0.544785 3_1:+82119073 Msa0380460:three_prime_UTR
CACTTCATCCAACTTCTCGA+AGG 0.544839 3_1:-82118498 None:intergenic
AGCTGCTAATTCTGAAGTTG+AGG 0.545403 3_1:+82118451 Msa0380460:CDS
AGCCGTGGAATCAGCCAGAA+AGG 0.546535 3_1:+82117842 Msa0380460:CDS
TGTGGAAAAGTAAAAGGAGG+TGG 0.547393 3_1:-82112954 None:intergenic
TCTGAGGAAGATTGATTATG+TGG 0.549334 3_1:-82114673 None:intergenic
TCCTTGACAGATTCGAATGG+AGG 0.549570 3_1:-82115123 None:intergenic
GGATGCTGTAACTGCCTCCT+CGG 0.551757 3_1:-82117445 None:intergenic
ATGAAGTGGACCCGTCCAGT+GGG 0.555823 3_1:+82118348 Msa0380460:CDS
AATACACGAGTGAAAGGAAA+CGG 0.558234 3_1:-82113153 None:intergenic
AAAGTGTAACCCCACTGGAC+GGG 0.558997 3_1:-82118358 None:intergenic
AGTTTGGAGGAATTGTCGAT+TGG 0.559426 3_1:+82115157 Msa0380460:CDS
TGAGCAAATGTTGTCTGCAA+AGG 0.559704 3_1:+82117659 Msa0380460:CDS
GTCCTCACAAAACACTGAGC+AGG 0.559854 3_1:-82119106 None:intergenic
TCCACTTAGTAACGGAGAAG+TGG 0.562086 3_1:+82114705 Msa0380460:CDS
GATTAGTTGCATACTGGGAC+CGG 0.562727 3_1:-82118739 None:intergenic
TGAAGAGGATTCAGAATCAG+AGG 0.565843 3_1:-82114458 None:intergenic
TGAAGAACTGCAGAAAGTAA+AGG 0.567540 3_1:+82118175 Msa0380460:CDS
TCGGAAAATACACGAGTGAA+AGG 0.570436 3_1:-82113159 None:intergenic
ACAACTAGTGAACTGTGAAT+GGG 0.572318 3_1:-82119363 None:intergenic
GATTAGGCAAAGAGAGGGAA+TGG 0.573233 3_1:+82117980 Msa0380460:CDS
TAGAAGGGAATCCTTGAAGA+TGG 0.574172 3_1:+82118538 Msa0380460:CDS
AACATCCTCCATTATAAGGA+GGG 0.578229 3_1:-82114290 None:intergenic
TCTTCAATATGTTCTGCTAG+TGG 0.579090 3_1:-82114361 None:intergenic
AGATGAAGGTGGATCATCAC+CGG 0.581928 3_1:+82118808 Msa0380460:CDS
TAGAGATGCAACTGCAATGG+AGG 0.583713 3_1:-82118003 None:intergenic
AGCTGCTTGAGCAAGCAAGT+TGG 0.584333 3_1:-82118150 None:intergenic
GAAGAGGATTCAGAATCAGA+GGG 0.585481 3_1:-82114457 None:intergenic
GATGGATCTAATCTGAGGTA+GGG 0.586248 3_1:+82112871 None:intergenic
AATTTCTGAAGAGACGCCAC+TGG 0.586404 3_1:+82114549 Msa0380460:CDS
CAAAGAAAGTGTAACCCCAC+TGG 0.586929 3_1:-82118363 None:intergenic
GTTGTGGACCTTCTGATGCA+TGG 0.587074 3_1:+82119381 Msa0380460:three_prime_UTR
CACAGATATACAAGCAGCCG+TGG 0.587150 3_1:+82117827 Msa0380460:CDS
TGTATATTCCATGCATCAGA+AGG 0.587934 3_1:-82119389 None:intergenic
TGCAAGTAACCTGCTTTCCA+AGG 0.587944 3_1:-82118231 None:intergenic
GCTGCAACTAACAGCTGAAG+AGG 0.588648 3_1:+82118118 Msa0380460:CDS
AGAGCTGGATGCATTGCGTA+AGG 0.589983 3_1:+82117377 Msa0380460:CDS
CTCACCCGCCCAAACCAAGC+AGG 0.590022 3_1:+82115068 Msa0380460:CDS
CATCAACCTGCAATTCATGC+TGG 0.590549 3_1:-82114936 None:intergenic
GAGTCACTCAGATCTCCAAA+AGG 0.591878 3_1:-82118978 None:intergenic
TCTTCAACATGTTCTGCTAG+TGG 0.593335 3_1:-82114427 None:intergenic
GAATCAAAGTTAAAGCAAGA+AGG 0.593429 3_1:+82117753 Msa0380460:CDS
GGCAGAAGCAGAACAAGCCA+AGG 0.593446 3_1:+82118196 Msa0380460:CDS
TTAACCAGAATAAAAGCCCC+AGG 0.593700 3_1:+82118678 Msa0380460:CDS
TCTTCAACATGTTCTGCCAG+TGG 0.594746 3_1:-82114565 None:intergenic
ACAAATCTTTACACAAGCCG+AGG 0.596314 3_1:-82119210 None:intergenic
AGTTACTGAGACACAACTGA+TGG 0.596510 3_1:+82114615 Msa0380460:CDS
AGCTGTACTGTGCCAGTACA+CGG 0.596548 3_1:+82119020 Msa0380460:three_prime_UTR
GGAATCCTTGAAGATGGCAA+TGG 0.598116 3_1:+82118544 Msa0380460:CDS
AAAGGAGATAGAGGCTGCAA+AGG 0.598223 3_1:+82118259 Msa0380460:CDS
TCAAACTATAATACAAGATG+AGG 0.599392 3_1:+82114795 Msa0380460:CDS
TTCTAGAGATGCAACTGCAA+TGG 0.599491 3_1:-82118006 None:intergenic
AAAGCTCAGAGTGGAAGAGA+TGG 0.599941 3_1:+82117251 Msa0380460:CDS
TCCCTCTCTTTGCCTAATCG+AGG 0.600136 3_1:-82117976 None:intergenic
CTCTGAAGAAAATACCGAAG+TGG 0.600805 3_1:+82114642 Msa0380460:CDS
ACTCAGATCTCCAAAAGGAT+GGG 0.602523 3_1:-82118973 None:intergenic
AAGGCTGGTGAGTCTGGCCA+AGG 0.604901 3_1:+82118650 Msa0380460:CDS
GAGGAAGATTGATTATGTGG+TGG 0.606655 3_1:-82114670 None:intergenic
AGATTCACTCAATTGGGAGA+AGG 0.607074 3_1:+82117599 Msa0380460:CDS
CTTCCAATTCCACTTAGTAA+CGG 0.607417 3_1:+82114697 Msa0380460:CDS
ATCAGCCAGAAAGGAACTTG+AGG 0.607425 3_1:+82117851 Msa0380460:CDS
AATGAAGTGGACCCGTCCAG+TGG 0.610356 3_1:+82118347 Msa0380460:CDS
CCGAGCCCTCCTTATAATGG+AGG 0.611792 3_1:+82114285 Msa0380460:exon
AAACACATTCAAACAAGTCA+GGG 0.611913 3_1:+82118900 Msa0380460:CDS
GCCTCGATTAGGCAAAGAGA+GGG 0.612208 3_1:+82117975 Msa0380460:CDS
GAAAGTGTAACCCCACTGGA+CGG 0.613134 3_1:-82118359 None:intergenic
GAACATCCTCCATTATAAGG+AGG 0.613704 3_1:-82114291 None:intergenic
ACCTCCATTCGAATCTGTCA+AGG 0.613789 3_1:+82115122 Msa0380460:CDS
ATACAGAAAACAAGCAGAGA+CGG 0.617490 3_1:+82117101 Msa0380460:CDS
CAAGGCTGGAGTAAGTACCT+TGG 0.617948 3_1:+82118214 Msa0380460:CDS
AGTGCTTCAAATCACAAACA+TGG 0.620747 3_1:-82119268 None:intergenic
AGCCAGAAAGGAACTTGAGG+AGG 0.622529 3_1:+82117854 Msa0380460:CDS
AAGTGGAATTGGAAGTTCTG+AGG 0.622609 3_1:-82114689 None:intergenic
TGGTGAGTCTGGCCAAGGAG+TGG 0.623365 3_1:+82118655 Msa0380460:CDS
GCTTCCTTGACAGATTCGAA+TGG 0.625828 3_1:-82115126 None:intergenic
AACTGGAAGTTGCTAAAGCT+AGG 0.628167 3_1:+82117316 Msa0380460:CDS
GCAAAGAACATCATAACCCG+TGG 0.628232 3_1:-82118869 None:intergenic
TCTTCAGATATATTGAACCT+CGG 0.628243 3_1:+82119193 Msa0380460:three_prime_UTR
GAGATGATGGATCTAATCTG+AGG 0.628857 3_1:+82112866 None:intergenic
CAAGGAAGTAGAGAAGTCAG+TGG 0.629489 3_1:+82117467 Msa0380460:CDS
GTGTTGCCAAATGTTTCTGA+TGG 0.631392 3_1:+82114772 Msa0380460:CDS
TAATTAGGGATGAGATTAAG+CGG 0.631548 3_1:-82113044 None:intergenic
GACAGATTCGAATGGAGGTG+TGG 0.633110 3_1:-82115118 None:intergenic
GCTTAGCAAACGAGCTCACG+AGG 0.633240 3_1:+82118400 Msa0380460:CDS
ACAAAGAATAGGAACAGTCA+TGG 0.635786 3_1:+82117566 Msa0380460:CDS
GGTGATGATGAACTCTCGCA+AGG 0.637677 3_1:+82117774 Msa0380460:CDS
AGCTATTAAGAAAGCCGAGG+AGG 0.640981 3_1:+82117431 Msa0380460:CDS
CAGATCTCCAAAAGGATGGG+AGG 0.641222 3_1:-82118970 None:intergenic
TAGAACAAGAACTTAGAAGG+TGG 0.641248 3_1:+82118603 Msa0380460:CDS
AGAGTGGAAGAGATGGAGCA+AGG 0.643532 3_1:+82117258 Msa0380460:CDS
AAAGCTGAGAAGGCAAAGGA+AGG 0.644947 3_1:+82118569 Msa0380460:CDS
GGAGAGCTGAAAATGAGCAA+CGG 0.649631 3_1:+82118624 Msa0380460:CDS
TGAAGCTATTAAGAAAGCCG+AGG 0.649803 3_1:+82117428 Msa0380460:CDS
TGCCTCGATTAGGCAAAGAG+AGG 0.651833 3_1:+82117974 Msa0380460:CDS
CAAATCAAGCAGCAAACCAG+AGG 0.652776 3_1:-82117706 None:intergenic
TCATCACCGGAATCAAAACA+TGG 0.652989 3_1:+82118821 Msa0380460:CDS
GATTGTGGAAAAGTAAAAGG+AGG 0.654254 3_1:-82112957 None:intergenic
TGAACTTGCAAAGCTCAGAG+TGG 0.657807 3_1:+82117242 Msa0380460:CDS
GGCTCATCGAATCCAGACTG+TGG 0.664456 3_1:+82115182 Msa0380460:CDS
CATAGAGAAAGCAAATGCTG+AGG 0.667742 3_1:+82117887 Msa0380460:CDS
TTCAGTTCCAAATGATACAG+TGG 0.670675 3_1:+82114840 Msa0380460:CDS
TCATCGAATCCAGACTGTGG+AGG 0.679040 3_1:+82115185 Msa0380460:CDS
CAAAGAACATCATAACCCGT+GGG 0.683684 3_1:-82118868 None:intergenic
TAACCAGAATAAAAGCCCCA+GGG 0.691189 3_1:+82118679 Msa0380460:CDS
GATGATGAACTCTCGCAAGG+AGG 0.713634 3_1:+82117777 Msa0380460:CDS
TGAAGTGGACCCGTCCAGTG+GGG 0.735490 3_1:+82118349 Msa0380460:CDS
GGGCTCGGGAGTGCTAACAG+CGG 0.757037 3_1:-82114270 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTGATATAGTTATAAAATTT+TGG - chr3_1:82116586-82116605 None:intergenic 10.0%
!! ATATTGATACTAATTATTAG+AGG - chr3_1:82112998-82113017 None:intergenic 15.0%
!!! TATTGTTATAATACTTCTTT+TGG + chr3_1:82114193-82114212 Msa0380460:intron 15.0%
!! AAAAATACTAGTAAAAGAAA+AGG - chr3_1:82115714-82115733 None:intergenic 15.0%
!! TATCTAAAAATGTACTAAAA+CGG + chr3_1:82116056-82116075 Msa0380460:intron 15.0%
!!! ATTAGTAGTAACTTATTTTT+GGG - chr3_1:82116462-82116481 None:intergenic 15.0%
!!! AATTAGTAGTAACTTATTTT+TGG - chr3_1:82116463-82116482 None:intergenic 15.0%
!!! ATAATTTTTAAAGCTGTTTT+CGG + chr3_1:82119442-82119461 Msa0380460:three_prime_UTR 15.0%
!! AAAGAAAAGAAAAGAAAAGA+AGG - chr3_1:82112933-82112952 None:intergenic 20.0%
!! TCGATTTATTATGTATGTTA+TGG + chr3_1:82113340-82113359 Msa0380460:intron 20.0%
!!! CTAAAGTTGATAGATAATTT+GGG - chr3_1:82113816-82113835 None:intergenic 20.0%
!! AGTTAGATGAAATTATTTCA+AGG - chr3_1:82113998-82114017 None:intergenic 20.0%
!!! ATGTGAGTTTTAAATTTAAG+TGG - chr3_1:82114114-82114133 None:intergenic 20.0%
!! TGAAAAGAAATAAGAGTAAT+AGG - chr3_1:82115300-82115319 None:intergenic 20.0%
!!! ATTACTCTTATTTCTTTTCA+AGG + chr3_1:82115300-82115319 Msa0380460:intron 20.0%
!! GCTTATACAATATCTATTAA+AGG + chr3_1:82115359-82115378 Msa0380460:intron 20.0%
!! TACAATATCTATTAAAGGAT+AGG + chr3_1:82115364-82115383 Msa0380460:intron 20.0%
!! AGTATCAATTTGATTATAAG+TGG + chr3_1:82115437-82115456 Msa0380460:intron 20.0%
!! ATGTAGCATATAATCAAAAT+TGG + chr3_1:82115624-82115643 Msa0380460:intron 20.0%
!!! GTATTTTTCTATCAATTTTC+TGG + chr3_1:82115726-82115745 Msa0380460:intron 20.0%
!! ATCTAATATCACAAAATTAC+AGG - chr3_1:82115805-82115824 None:intergenic 20.0%
!! TAGATAAAGAAAAATTTGAG+TGG - chr3_1:82116042-82116061 None:intergenic 20.0%
!! ATCTAAAAATGTACTAAAAC+GGG + chr3_1:82116057-82116076 Msa0380460:intron 20.0%
!!! AATAAGTGCTTTTCTTTTAA+TGG - chr3_1:82116414-82116433 None:intergenic 20.0%
!!! TTCGTATATGAAAAAAGTAT+TGG - chr3_1:82116535-82116554 None:intergenic 20.0%
!! GATACTAATTGTAAAATACA+AGG + chr3_1:82116773-82116792 Msa0380460:intron 20.0%
!!! TTTTTTTCTTCTTTTCTTTC+TGG + chr3_1:82117017-82117036 Msa0380460:intron 20.0%
!! AGCTAAATTAACTGTTTATA+TGG + chr3_1:82117731-82117750 Msa0380460:CDS 20.0%
!! AATGCACATAATTTCAATTT+GGG - chr3_1:82118930-82118949 None:intergenic 20.0%
!!! TAATTTTTAAAGCTGTTTTC+GGG + chr3_1:82119443-82119462 Msa0380460:three_prime_UTR 20.0%
! AATTAGAACACAGAAAAACA+CGG - chr3_1:82112904-82112923 None:intergenic 25.0%
! ATGAAATTAAAGTGAGATTG+TGG - chr3_1:82112975-82112994 None:intergenic 25.0%
! TAGTTATAGATTAGTGCTAT+AGG + chr3_1:82113219-82113238 Msa0380460:intron 25.0%
!! CTGGAAATTGCATTTTATTA+TGG + chr3_1:82113372-82113391 Msa0380460:intron 25.0%
!!! GATAGATAATTTGGGTTTTA+AGG - chr3_1:82113808-82113827 None:intergenic 25.0%
!!! CCTAAAGTTGATAGATAATT+TGG - chr3_1:82113817-82113836 None:intergenic 25.0%
! CCAAATTATCTATCAACTTT+AGG + chr3_1:82113814-82113833 Msa0380460:intron 25.0%
! AAATCAAAACTGAATGTGAA+CGG - chr3_1:82113863-82113882 None:intergenic 25.0%
! TTAAATTGTATGTACCAGTT+AGG - chr3_1:82114056-82114075 None:intergenic 25.0%
!!! TCAATTTGTCTCTTGTTTTT+GGG + chr3_1:82114079-82114098 Msa0380460:intron 25.0%
!!! GAGTTTTAAATTTAAGTGGA+TGG - chr3_1:82114110-82114129 None:intergenic 25.0%
!! TCTCTTCAGAAATTTTTGAA+GGG - chr3_1:82114543-82114562 None:intergenic 25.0%
! TCAAACTATAATACAAGATG+AGG + chr3_1:82114795-82114814 Msa0380460:CDS 25.0%
!!! AGAGAATTAGGTTGAATATT+GGG + chr3_1:82115323-82115342 Msa0380460:intron 25.0%
! ACGTGTCAAATTAATTATTC+TGG + chr3_1:82115656-82115675 Msa0380460:intron 25.0%
! TGTGTTACATCATATTAACT+TGG + chr3_1:82115838-82115857 Msa0380460:intron 25.0%
! TTTCATTACCTTGCTTAAAA+CGG - chr3_1:82115882-82115901 None:intergenic 25.0%
! TCTAAAAATGTACTAAAACG+GGG + chr3_1:82116058-82116077 Msa0380460:intron 25.0%
! TGTTATTAGTCATATATCCT+AGG + chr3_1:82116316-82116335 Msa0380460:intron 25.0%
!!! TAACTTATTTTTGGGTATAG+TGG - chr3_1:82116454-82116473 None:intergenic 25.0%
! ATTACCACTATTATATATCC+TGG + chr3_1:82116480-82116499 Msa0380460:intron 25.0%
! TTACCACTATTATATATCCT+GGG + chr3_1:82116481-82116500 Msa0380460:intron 25.0%
!!! AATTTGTTGAATGCATTGTA+AGG - chr3_1:82116851-82116870 None:intergenic 25.0%
! TACAATGCATTCAACAAATT+AGG + chr3_1:82116851-82116870 Msa0380460:intron 25.0%
! ACAATGCATTCAACAAATTA+GGG + chr3_1:82116852-82116871 Msa0380460:intron 25.0%
!!! TACATCTTTAAAATCAGAAC+TGG + chr3_1:82117932-82117951 Msa0380460:CDS 25.0%
! AAATAGAAGCAAAAATGAAG+TGG + chr3_1:82118334-82118353 Msa0380460:CDS 25.0%
!!! TTTTTTCCATGTTTTGATTC+CGG - chr3_1:82118830-82118849 None:intergenic 25.0%
! CAATGCACATAATTTCAATT+TGG - chr3_1:82118931-82118950 None:intergenic 25.0%
!! CAATCAATATAGTGAGTTTT+GGG - chr3_1:82119316-82119335 None:intergenic 25.0%
!! TCAATCAATATAGTGAGTTT+TGG - chr3_1:82119317-82119336 None:intergenic 25.0%
!! TCACTATATTGATTGATACT+AGG + chr3_1:82119321-82119340 Msa0380460:three_prime_UTR 25.0%
TGAGATTGTGGAAAAGTAAA+AGG - chr3_1:82112963-82112982 None:intergenic 30.0%
TAATTAGGGATGAGATTAAG+CGG - chr3_1:82113047-82113066 None:intergenic 30.0%
ACCTGATTAGGAAGTAATTA+GGG - chr3_1:82113061-82113080 None:intergenic 30.0%
TTAGTGCTATAGGTTTAATC+TGG + chr3_1:82113229-82113248 Msa0380460:intron 30.0%
TATGTTATGGTCTTTGTTAC+TGG + chr3_1:82113353-82113372 Msa0380460:intron 30.0%
TTACTTGTAGTTGGAACTTA+AGG + chr3_1:82113627-82113646 Msa0380460:intron 30.0%
TACTTGTAGTTGGAACTTAA+GGG + chr3_1:82113628-82113647 Msa0380460:intron 30.0%
!!! AAGGTTTTAAATAGTCGTCA+CGG + chr3_1:82113687-82113706 Msa0380460:intron 30.0%
!! CATGATTTTGTTGTGATCAT+TGG + chr3_1:82113711-82113730 Msa0380460:intron 30.0%
ATTACTTGTGATCACAATTG+TGG + chr3_1:82113759-82113778 Msa0380460:intron 30.0%
ATCCCTACAAAAAAAAGTCT+TGG + chr3_1:82113906-82113925 Msa0380460:intron 30.0%
!!! GACCAAGACTTTTTTTTGTA+GGG - chr3_1:82113911-82113930 None:intergenic 30.0%
!!! AGACCAAGACTTTTTTTTGT+AGG - chr3_1:82113912-82113931 None:intergenic 30.0%
AAATTCAGACACTGAAAACT+TGG + chr3_1:82113939-82113958 Msa0380460:intron 30.0%
AATTCAGACACTGAAAACTT+GGG + chr3_1:82113940-82113959 Msa0380460:intron 30.0%
TTGGGAAACATCATTATTTC+AGG + chr3_1:82113958-82113977 Msa0380460:intron 30.0%
!! TCACAAACACTACTTTTCTT+TGG - chr3_1:82114022-82114041 None:intergenic 30.0%
TGAAAAGAAAAACACCTAAC+TGG + chr3_1:82114039-82114058 Msa0380460:intron 30.0%
!!! CTCAATTTGTCTCTTGTTTT+TGG + chr3_1:82114078-82114097 Msa0380460:intron 30.0%
!! CTCTTCAGAAATTTTTGAAG+GGG - chr3_1:82114542-82114561 None:intergenic 30.0%
! GTCTCTTCAGAAATTTTTGA+AGG - chr3_1:82114544-82114563 None:intergenic 30.0%
AATCTTCAACCAAATTTAGC+TGG - chr3_1:82114885-82114904 None:intergenic 30.0%
!! CAAATCTTTTGTTTCAGAAG+AGG - chr3_1:82115004-82115023 None:intergenic 30.0%
AATGAAGTAAAGATGTCTTC+TGG + chr3_1:82115036-82115055 Msa0380460:CDS 30.0%
!! TTCTTTTCAAGGAGAGAATT+AGG + chr3_1:82115311-82115330 Msa0380460:intron 30.0%
!! GAGAGAATTAGGTTGAATAT+TGG + chr3_1:82115322-82115341 Msa0380460:intron 30.0%
!! GAGAATTAGGTTGAATATTG+GGG + chr3_1:82115324-82115343 Msa0380460:intron 30.0%
TTAGGCCTATAATATGACTT+TGG - chr3_1:82115534-82115553 None:intergenic 30.0%
! CATGCAAGTAATGTGTTATT+AGG - chr3_1:82115552-82115571 None:intergenic 30.0%
TTAAGCAAGGTAATGAAAAC+CGG + chr3_1:82115884-82115903 Msa0380460:intron 30.0%
TTCTTTAACAAGAGAAAGAG+CGG + chr3_1:82116140-82116159 Msa0380460:intron 30.0%
ATAATCTTAAGTGTCCTTCT+AGG - chr3_1:82116387-82116406 None:intergenic 30.0%
TATTATATATCCTGGGAAGT+TGG + chr3_1:82116488-82116507 Msa0380460:intron 30.0%
AAAACCAAGGTAATCAAAAC+TGG - chr3_1:82116723-82116742 None:intergenic 30.0%
ACGTTTAACACTTAAAACCA+AGG - chr3_1:82116736-82116755 None:intergenic 30.0%
ACAAGGAAACTATGATTGTA+TGG + chr3_1:82116790-82116809 Msa0380460:intron 30.0%
AAACCATAAACAGTTTCCTT+GGG - chr3_1:82116821-82116840 None:intergenic 30.0%
AAAACCATAAACAGTTTCCT+TGG - chr3_1:82116822-82116841 None:intergenic 30.0%
AGATACTTTGCATCTCAATA+TGG + chr3_1:82116885-82116904 Msa0380460:intron 30.0%
!! GAACGTTTTATTACATCAGT+AGG - chr3_1:82116913-82116932 None:intergenic 30.0%
! TTTTCTTTCTGGATATACAG+AGG + chr3_1:82117028-82117047 Msa0380460:intron 30.0%
GACGAAAAATCAAGTACTAA+AGG + chr3_1:82117131-82117150 Msa0380460:CDS 30.0%
TAACTCTTCTATAAGTCTCT+TGG - chr3_1:82117169-82117188 None:intergenic 30.0%
AGATCAAGATTCACTCAATT+GGG + chr3_1:82117593-82117612 Msa0380460:CDS 30.0%
AAAGGATCTCAAATCTAAAC+TGG + chr3_1:82117677-82117696 Msa0380460:CDS 30.0%
GAATCAAAGTTAAAGCAAGA+AGG + chr3_1:82117753-82117772 Msa0380460:CDS 30.0%
!! AATAGCTTTGGTTCAAATGA+AGG + chr3_1:82118055-82118074 Msa0380460:CDS 30.0%
!! AGGAAGCAAATAATTTTGAC+CGG + chr3_1:82118720-82118739 Msa0380460:CDS 30.0%
AAAACACATTCAAACAAGTC+AGG + chr3_1:82118899-82118918 Msa0380460:CDS 30.0%
AAACACATTCAAACAAGTCA+GGG + chr3_1:82118900-82118919 Msa0380460:CDS 30.0%
ATTGGATTATACTCACTTGA+TGG + chr3_1:82119069-82119088 Msa0380460:three_prime_UTR 30.0%
TTGTGAGGACTTAAGAAAAT+AGG + chr3_1:82119119-82119138 Msa0380460:three_prime_UTR 30.0%
AAAATAGGTTCGTCTATGTT+GGG + chr3_1:82119134-82119153 Msa0380460:three_prime_UTR 30.0%
TCTTCAGATATATTGAACCT+CGG + chr3_1:82119193-82119212 Msa0380460:three_prime_UTR 30.0%
! ACTAGGAAGAATTTTCTCAA+TGG + chr3_1:82119338-82119357 Msa0380460:three_prime_UTR 30.0%
! CTAGGAAGAATTTTCTCAAT+GGG + chr3_1:82119339-82119358 Msa0380460:three_prime_UTR 30.0%
TGCATGGAATATACACATAA+AGG + chr3_1:82119397-82119416 Msa0380460:three_prime_UTR 30.0%
GATTGTGGAAAAGTAAAAGG+AGG - chr3_1:82112960-82112979 None:intergenic 35.0%
TCCCTAATTACTTCCTAATC+AGG + chr3_1:82113057-82113076 Msa0380460:five_prime_UTR 35.0%
CACCTGATTAGGAAGTAATT+AGG - chr3_1:82113062-82113081 None:intergenic 35.0%
AATACACGAGTGAAAGGAAA+CGG - chr3_1:82113156-82113175 None:intergenic 35.0%
! GTGTATTTTCCGAACATCAA+CGG + chr3_1:82113169-82113188 Msa0380460:five_prime_UTR 35.0%
!! AAGGTGTTTTGTCTACGAAA+AGG + chr3_1:82113195-82113214 Msa0380460:five_prime_UTR 35.0%
TGCAGTTACTTACTTGTAGT+TGG + chr3_1:82113618-82113637 Msa0380460:intron 35.0%
ACTTGTAGTTGGAACTTAAG+GGG + chr3_1:82113629-82113648 Msa0380460:intron 35.0%
AACTGAATGTGAACGGTTAA+TGG - chr3_1:82113856-82113875 None:intergenic 35.0%
! TTTTCAGTGTCTGAATTTGC+AGG - chr3_1:82113937-82113956 None:intergenic 35.0%
AACATCCTCCATTATAAGGA+GGG - chr3_1:82114293-82114312 None:intergenic 35.0%
CTTGAACATCCTCCATTATA+AGG - chr3_1:82114297-82114316 None:intergenic 35.0%
! ATTTTTGTAGAGGAGTCAGA+GGG - chr3_1:82114328-82114347 None:intergenic 35.0%
! AATTTTTGTAGAGGAGTCAG+AGG - chr3_1:82114329-82114348 None:intergenic 35.0%
! CTCTTCAGCAATTTTTGTAG+AGG - chr3_1:82114338-82114357 None:intergenic 35.0%
TCTTCAATATGTTCTGCTAG+TGG - chr3_1:82114364-82114383 None:intergenic 35.0%
!! ACTTTTGAAGAGGATTCAGA+GGG - chr3_1:82114394-82114413 None:intergenic 35.0%
!! AACTTTTGAAGAGGATTCAG+AGG - chr3_1:82114395-82114414 None:intergenic 35.0%
!! CTCTTCAGTAACTTTTGAAG+AGG - chr3_1:82114404-82114423 None:intergenic 35.0%
!! CTCTTCAGTAACTTTTGAAG+AGG - chr3_1:82114404-82114423 None:intergenic 35.0%
AGTTACTGAAGAGACACATA+TGG + chr3_1:82114483-82114502 Msa0380460:CDS 35.0%
!! ATTTTTGAAGGGGATTCAGA+TGG - chr3_1:82114532-82114551 None:intergenic 35.0%
AGGAAGATTGATTATGTGGT+GGG - chr3_1:82114672-82114691 None:intergenic 35.0%
TCTGAGGAAGATTGATTATG+TGG - chr3_1:82114676-82114695 None:intergenic 35.0%
CTTCCAATTCCACTTAGTAA+CGG + chr3_1:82114697-82114716 Msa0380460:CDS 35.0%
TTGGCAACACTGATAATTCA+GGG - chr3_1:82114762-82114781 None:intergenic 35.0%
TTTGGCAACACTGATAATTC+AGG - chr3_1:82114763-82114782 None:intergenic 35.0%
GTTTGACCATCAGAAACATT+TGG - chr3_1:82114781-82114800 None:intergenic 35.0%
TTCAGTTCCAAATGATACAG+TGG + chr3_1:82114840-82114859 Msa0380460:CDS 35.0%
TTGGTTGAAGATTCTAAACC+AGG + chr3_1:82114892-82114911 Msa0380460:CDS 35.0%
! TCTTTTTACATCAACCTGCT+TGG - chr3_1:82115085-82115104 None:intergenic 35.0%
!! AAGCAGGTTGATGTAAAAAG+AGG + chr3_1:82115084-82115103 Msa0380460:CDS 35.0%
!! AAGGAAGCTGTTTCTAAGTT+TGG + chr3_1:82115141-82115160 Msa0380460:CDS 35.0%
! TTATGCAAGAAGTGTGAAGA+AGG - chr3_1:82115267-82115286 None:intergenic 35.0%
TCTATTAAAGGATAGGCAAG+AGG + chr3_1:82115371-82115390 Msa0380460:intron 35.0%
CAAGAGGCAAATGTTGTTAT+GGG + chr3_1:82115387-82115406 Msa0380460:intron 35.0%
AAGAGGCAAATGTTGTTATG+GGG + chr3_1:82115388-82115407 Msa0380460:intron 35.0%
GCCAACCAAAGTCATATTAT+AGG + chr3_1:82115526-82115545 Msa0380460:intron 35.0%
GCCTATAATATGACTTTGGT+TGG - chr3_1:82115530-82115549 None:intergenic 35.0%
AAACCACTCTGTTGTTAAAC+CGG + chr3_1:82115959-82115978 Msa0380460:intron 35.0%
! GTTCTGCGTTTTCTTCTTAA+AGG + chr3_1:82116103-82116122 Msa0380460:intron 35.0%
TCTTTAACAAGAGAAAGAGC+GGG + chr3_1:82116141-82116160 Msa0380460:intron 35.0%
TGGGTATTAACAAAGACACT+TGG + chr3_1:82116217-82116236 Msa0380460:intron 35.0%
CTTCCCAGGATATATAATAG+TGG - chr3_1:82116487-82116506 None:intergenic 35.0%
AGAGAAGACATGTGAGAAAA+CGG + chr3_1:82116627-82116646 Msa0380460:intron 35.0%
! TGATTGTATGGTTTTTCCCA+AGG + chr3_1:82116802-82116821 Msa0380460:intron 35.0%
TTTCCCAAGGAAACTGTTTA+TGG + chr3_1:82116815-82116834 Msa0380460:intron 35.0%
! TACCTTGCTTGATTTTCTGT+TGG + chr3_1:82116975-82116994 Msa0380460:intron 35.0%
!! TCTGCTTGTTTTCTGTATTC+TGG - chr3_1:82117099-82117118 None:intergenic 35.0%
ATACAGAAAACAAGCAGAGA+CGG + chr3_1:82117101-82117120 Msa0380460:CDS 35.0%
AAATCAAGTACTAAAGGAGC+TGG + chr3_1:82117137-82117156 Msa0380460:CDS 35.0%
AGTTGCTAAAGCTAGGTATA+CGG + chr3_1:82117323-82117342 Msa0380460:CDS 35.0%
TTCATCTCTATCAGTCACTA+AGG - chr3_1:82117412-82117431 None:intergenic 35.0%
! AGTCTCTAATGACTCTTTTG+TGG - chr3_1:82117517-82117536 None:intergenic 35.0%
ACAAAGAATAGGAACAGTCA+TGG + chr3_1:82117566-82117585 Msa0380460:CDS 35.0%
GAGATCAAGATTCACTCAAT+TGG + chr3_1:82117592-82117611 Msa0380460:CDS 35.0%
!! ACATTTGCTCATTGATTCTC+TGG - chr3_1:82117650-82117669 None:intergenic 35.0%
!!! TCTTCTTTTCTGGTTCTTCT+TGG - chr3_1:82117803-82117822 None:intergenic 35.0%
GACTAGATCAGAAATAGCTT+TGG + chr3_1:82118043-82118062 Msa0380460:CDS 35.0%
AAGTTCGGTCATTTGTTCTT+TGG - chr3_1:82118090-82118109 None:intergenic 35.0%
TGAAGAACTGCAGAAAGTAA+AGG + chr3_1:82118175-82118194 Msa0380460:CDS 35.0%
! TTTTTCCATTGCCATCTTCA+AGG - chr3_1:82118552-82118571 None:intergenic 35.0%
AAGGCAAAGGAAGGTAAATT+AGG + chr3_1:82118578-82118597 Msa0380460:CDS 35.0%
GTGTAGAACAAGAACTTAGA+AGG + chr3_1:82118600-82118619 Msa0380460:CDS 35.0%
TAGAACAAGAACTTAGAAGG+TGG + chr3_1:82118603-82118622 Msa0380460:CDS 35.0%
TCTGCATGCATATAAGTCTT+CGG - chr3_1:82118785-82118804 None:intergenic 35.0%
ATGCATGCAGAAAAAGATGA+AGG + chr3_1:82118794-82118813 Msa0380460:CDS 35.0%
! TCGATTTGTGTATGGTTTGA+CGG + chr3_1:82119046-82119065 Msa0380460:three_prime_UTR 35.0%
GATTATACTCACTTGATGGA+TGG + chr3_1:82119073-82119092 Msa0380460:three_prime_UTR 35.0%
GAAAATAGGTTCGTCTATGT+TGG + chr3_1:82119133-82119152 Msa0380460:three_prime_UTR 35.0%
AGTGCTTCAAATCACAAACA+TGG - chr3_1:82119271-82119290 None:intergenic 35.0%
! GTGATTTGAAGCACTTTGAA+TGG + chr3_1:82119276-82119295 Msa0380460:three_prime_UTR 35.0%
ACAACTAGTGAACTGTGAAT+GGG - chr3_1:82119366-82119385 None:intergenic 35.0%
TGTATATTCCATGCATCAGA+AGG - chr3_1:82119392-82119411 None:intergenic 35.0%
!!! TTTTAAAGCTGTTTTCGGGA+AGG + chr3_1:82119447-82119466 Msa0380460:three_prime_UTR 35.0%
ATCATCAAATGATCCAGAAC+AGG - chr3_1:82119475-82119494 None:intergenic 35.0%
AACACAGAAAAACACGGAAG+TGG - chr3_1:82112898-82112917 None:intergenic 40.0%
TGTGGAAAAGTAAAAGGAGG+TGG - chr3_1:82112957-82112976 None:intergenic 40.0%
ACTTCGCAAAACACCTGATT+AGG - chr3_1:82113073-82113092 None:intergenic 40.0%
TCGGAAAATACACGAGTGAA+AGG - chr3_1:82113162-82113181 None:intergenic 40.0%
GAGATCTCTGCATTTGTCAA+AGG + chr3_1:82113668-82113687 Msa0380460:intron 40.0%
ATTTCAAGGTGTAAGCTCGA+TGG - chr3_1:82113984-82114003 None:intergenic 40.0%
GAACATCCTCCATTATAAGG+AGG - chr3_1:82114294-82114313 None:intergenic 40.0%
TCTTCAACATGTTCTGCTAG+TGG - chr3_1:82114430-82114449 None:intergenic 40.0%
GAAGAGGATTCAGAATCAGA+GGG - chr3_1:82114460-82114479 None:intergenic 40.0%
TGAAGAGGATTCAGAATCAG+AGG - chr3_1:82114461-82114480 None:intergenic 40.0%
AGTTACTGAGACACAACTGA+TGG + chr3_1:82114615-82114634 Msa0380460:CDS 40.0%
! CACTTCGGTATTTTCTTCAG+AGG - chr3_1:82114644-82114663 None:intergenic 40.0%
! CTCTGAAGAAAATACCGAAG+TGG + chr3_1:82114642-82114661 Msa0380460:CDS 40.0%
GAGGAAGATTGATTATGTGG+TGG - chr3_1:82114673-82114692 None:intergenic 40.0%
AAGTGGAATTGGAAGTTCTG+AGG - chr3_1:82114692-82114711 None:intergenic 40.0%
TCTCCGTTACTAAGTGGAAT+TGG - chr3_1:82114703-82114722 None:intergenic 40.0%
! GTGTTGCCAAATGTTTCTGA+TGG + chr3_1:82114772-82114791 Msa0380460:CDS 40.0%
GTCACATCCACTGTATCATT+TGG - chr3_1:82114850-82114869 None:intergenic 40.0%
AACAAGCGACCAGCTAAATT+TGG + chr3_1:82114873-82114892 Msa0380460:CDS 40.0%
TACATCAACCTGCTTGGTTT+GGG - chr3_1:82115079-82115098 None:intergenic 40.0%
TTACATCAACCTGCTTGGTT+TGG - chr3_1:82115080-82115099 None:intergenic 40.0%
!! GAAGCTGTTTCTAAGTTTGG+AGG + chr3_1:82115144-82115163 Msa0380460:CDS 40.0%
AGTTTGGAGGAATTGTCGAT+TGG + chr3_1:82115157-82115176 Msa0380460:CDS 40.0%
ACATATATACCTCCACAGTC+TGG - chr3_1:82115197-82115216 None:intergenic 40.0%
GCAAGAGGCAAATGTTGTTA+TGG + chr3_1:82115386-82115405 Msa0380460:intron 40.0%
!! GCTATGATCCGTTTTAAGCA+AGG + chr3_1:82115871-82115890 Msa0380460:intron 40.0%
CAAGGTAATGAAAACCGGAT+CGG + chr3_1:82115889-82115908 Msa0380460:intron 40.0%
AACCACTCTGTTGTTAAACC+GGG + chr3_1:82115960-82115979 Msa0380460:intron 40.0%
AATTTGAGTGGTCCAACCTA+TGG - chr3_1:82116030-82116049 None:intergenic 40.0%
CTTTAACAAGAGAAAGAGCG+GGG + chr3_1:82116142-82116161 Msa0380460:intron 40.0%
! TGAAAGCATACACTGGAGAA+GGG + chr3_1:82116173-82116192 Msa0380460:intron 40.0%
TTGGAGAATAAGATGTGCAC+AGG + chr3_1:82116236-82116255 Msa0380460:intron 40.0%
TACTACTAGTCGAACTTCCT+AGG - chr3_1:82116336-82116355 None:intergenic 40.0%
AATTAGTCATGAGACCCTAG+TGG + chr3_1:82116355-82116374 Msa0380460:intron 40.0%
AAATCATAGTCCAACTTCCC+AGG - chr3_1:82116501-82116520 None:intergenic 40.0%
! GGGAAGTTGGACTATGATTT+TGG + chr3_1:82116501-82116520 Msa0380460:intron 40.0%
CAAGGTAATCAAAACTGGAC+CGG - chr3_1:82116718-82116737 None:intergenic 40.0%
GTTGAATGCATTGTAAGGCA+AGG - chr3_1:82116846-82116865 None:intergenic 40.0%
CTCCAACAGAAAATCAAGCA+AGG - chr3_1:82116980-82116999 None:intergenic 40.0%
AACTGGAAGTTGCTAAAGCT+AGG + chr3_1:82117316-82117335 Msa0380460:CDS 40.0%
TGAAGCTATTAAGAAAGCCG+AGG + chr3_1:82117428-82117447 Msa0380460:CDS 40.0%
GAAGCAGAGGAACAAAGAAT+AGG + chr3_1:82117555-82117574 Msa0380460:CDS 40.0%
AGATTCACTCAATTGGGAGA+AGG + chr3_1:82117599-82117618 Msa0380460:CDS 40.0%
TTGGGAGAAGGAACTTAAAC+AGG + chr3_1:82117611-82117630 Msa0380460:CDS 40.0%
TGAGCAAATGTTGTCTGCAA+AGG + chr3_1:82117659-82117678 Msa0380460:CDS 40.0%
! TCTGTGTGTGTCTTCTTTTC+TGG - chr3_1:82117813-82117832 None:intergenic 40.0%
CATAGAGAAAGCAAATGCTG+AGG + chr3_1:82117887-82117906 Msa0380460:CDS 40.0%
AATCATCTCTTGCCTCGATT+AGG + chr3_1:82117964-82117983 Msa0380460:CDS 40.0%
! TTCTAGAGATGCAACTGCAA+TGG - chr3_1:82118009-82118028 None:intergenic 40.0%
! TGCATCTCTAGAAGCTGAAT+TGG + chr3_1:82118016-82118035 Msa0380460:CDS 40.0%
! TTGCAGCTTCTTTGGAAGTT+CGG - chr3_1:82118105-82118124 None:intergenic 40.0%
! TGCAAAGGCTTCTGAAAAGT+TGG + chr3_1:82118274-82118293 Msa0380460:CDS 40.0%
!! AGCTGCTAATTCTGAAGTTG+AGG + chr3_1:82118451-82118470 Msa0380460:CDS 40.0%
!! TTCTGAAGTTGAGGTAGCTA+AGG + chr3_1:82118460-82118479 Msa0380460:CDS 40.0%
ACTGAAATCCTTCGAGAAGT+TGG + chr3_1:82118490-82118509 Msa0380460:CDS 40.0%
ATAGAGAGATAGCTGCTAGA+AGG + chr3_1:82118522-82118541 Msa0380460:CDS 40.0%
TAGAGAGATAGCTGCTAGAA+GGG + chr3_1:82118523-82118542 Msa0380460:CDS 40.0%
TAGAAGGGAATCCTTGAAGA+TGG + chr3_1:82118538-82118557 Msa0380460:CDS 40.0%
TGAAAATGAGCAACGGAGAA+AGG + chr3_1:82118631-82118650 Msa0380460:CDS 40.0%
! TATTCTGGTTAACCACTCCT+TGG - chr3_1:82118670-82118689 None:intergenic 40.0%
TTAACCAGAATAAAAGCCCC+AGG + chr3_1:82118678-82118697 Msa0380460:CDS 40.0%
TAACCAGAATAAAAGCCCCA+GGG + chr3_1:82118679-82118698 Msa0380460:CDS 40.0%
!! TGCAGGATTAGTTGCATACT+GGG - chr3_1:82118747-82118766 None:intergenic 40.0%
GGACTTGACAAATATTGTGC+AGG - chr3_1:82118764-82118783 None:intergenic 40.0%
CATGCAGAAAAAGATGAAGG+TGG + chr3_1:82118797-82118816 Msa0380460:CDS 40.0%
TCATCACCGGAATCAAAACA+TGG + chr3_1:82118821-82118840 Msa0380460:CDS 40.0%
AGAAGAAATCGTTGTTCCCA+CGG + chr3_1:82118852-82118871 Msa0380460:CDS 40.0%
CAAAGAACATCATAACCCGT+GGG - chr3_1:82118871-82118890 None:intergenic 40.0%
ACTCAGATCTCCAAAAGGAT+GGG - chr3_1:82118976-82118995 None:intergenic 40.0%
ATCTGAGTGACTCGAAATGT+TGG + chr3_1:82118988-82119007 Msa0380460:three_prime_UTR 40.0%
! TTGTGTATGGTTTGACGGAT+TGG + chr3_1:82119051-82119070 Msa0380460:three_prime_UTR 40.0%
! CTCACTTGATGGATGGTATA+CGG + chr3_1:82119080-82119099 Msa0380460:three_prime_UTR 40.0%
ACAAATCTTTACACAAGCCG+AGG - chr3_1:82119213-82119232 None:intergenic 40.0%
CACAACTAGTGAACTGTGAA+TGG - chr3_1:82119367-82119386 None:intergenic 40.0%
CATTCACAGTTCACTAGTTG+TGG + chr3_1:82119365-82119384 Msa0380460:three_prime_UTR 40.0%
TTCCGAACATCAACGGTTGA+AGG + chr3_1:82113176-82113195 Msa0380460:five_prime_UTR 45.0%
CACCTTCAACCGTTGATGTT+CGG - chr3_1:82113181-82113200 None:intergenic 45.0%
AGCACAATACTTATCCGCAC+CGG + chr3_1:82113417-82113436 Msa0380460:intron 45.0%
AACCTGTCAGTGTCGTGTTA+GGG + chr3_1:82113505-82113524 Msa0380460:intron 45.0%
TCACAATTGTGGTTGCGATG+TGG + chr3_1:82113770-82113789 Msa0380460:intron 45.0%
! AATTTCTGAAGAGACGCCAC+TGG + chr3_1:82114549-82114568 Msa0380460:CDS 45.0%
TCTTCAACATGTTCTGCCAG+TGG - chr3_1:82114568-82114587 None:intergenic 45.0%
!! ATGTGGTGGGTTTACCACTT+CGG - chr3_1:82114659-82114678 None:intergenic 45.0%
! TCCACTTAGTAACGGAGAAG+TGG + chr3_1:82114705-82114724 Msa0380460:CDS 45.0%
TCCACTTCTCCGTTACTAAG+TGG - chr3_1:82114709-82114728 None:intergenic 45.0%
TGCTGGTCAGAGATATCTTC+TGG - chr3_1:82114922-82114941 None:intergenic 45.0%
CATCAACCTGCAATTCATGC+TGG - chr3_1:82114939-82114958 None:intergenic 45.0%
ACCTCCATTCGAATCTGTCA+AGG + chr3_1:82115122-82115141 Msa0380460:CDS 45.0%
TCCTTGACAGATTCGAATGG+AGG - chr3_1:82115126-82115145 None:intergenic 45.0%
GCTTCCTTGACAGATTCGAA+TGG - chr3_1:82115129-82115148 None:intergenic 45.0%
! TGGAGGAATTGTCGATTGGA+AGG + chr3_1:82115161-82115180 Msa0380460:CDS 45.0%
GTACCAAACAGACCAGACAT+AGG - chr3_1:82115936-82115955 None:intergenic 45.0%
!! CCACTTTTGCACGGTTTTAG+CGG - chr3_1:82115993-82116012 None:intergenic 45.0%
CTAAAACCGTGCAAAAGTGG+CGG + chr3_1:82115993-82116012 Msa0380460:intron 45.0%
! GGATGAGTGAAAGCATACAC+TGG + chr3_1:82116166-82116185 Msa0380460:intron 45.0%
! GTGAAAGCATACACTGGAGA+AGG + chr3_1:82116172-82116191 Msa0380460:intron 45.0%
! CTTCTAGGTTCTAGCCACTA+GGG - chr3_1:82116372-82116391 None:intergenic 45.0%
CAAGGTTCAAAGGTTGGACA+GGG - chr3_1:82116669-82116688 None:intergenic 45.0%
TCAAGGTTCAAAGGTTGGAC+AGG - chr3_1:82116670-82116689 None:intergenic 45.0%
ACATTGAACCAGTGTAGGCA+CGG - chr3_1:82116695-82116714 None:intergenic 45.0%
!!! CGGTCCAGTTTTGATTACCT+TGG + chr3_1:82116716-82116735 Msa0380460:intron 45.0%
! TTTTGCTTCCTGCTGTACTG+AGG + chr3_1:82116934-82116953 Msa0380460:intron 45.0%
CAATTGATCCTCAGTACAGC+AGG - chr3_1:82116945-82116964 None:intergenic 45.0%
CTTCAGTTTGTGCTCTCTCT+AGG - chr3_1:82117200-82117219 None:intergenic 45.0%
AGCACAAACTGAAGAGCAAC+AGG + chr3_1:82117206-82117225 Msa0380460:CDS 45.0%
TGAACTTGCAAAGCTCAGAG+TGG + chr3_1:82117242-82117261 Msa0380460:CDS 45.0%
AAAGCTCAGAGTGGAAGAGA+TGG + chr3_1:82117251-82117270 Msa0380460:CDS 45.0%
AGCTATTAAGAAAGCCGAGG+AGG + chr3_1:82117431-82117450 Msa0380460:CDS 45.0%
!! CACTGACTTCTCTACTTCCT+TGG - chr3_1:82117469-82117488 None:intergenic 45.0%
CAAGGAAGTAGAGAAGTCAG+TGG + chr3_1:82117467-82117486 Msa0380460:CDS 45.0%
CAAATCAAGCAGCAAACCAG+AGG - chr3_1:82117709-82117728 None:intergenic 45.0%
!! TTCCTTTCTGGCTGATTCCA+CGG - chr3_1:82117847-82117866 None:intergenic 45.0%
ATCAGCCAGAAAGGAACTTG+AGG + chr3_1:82117851-82117870 Msa0380460:CDS 45.0%
TACCTCCTCAAGTTCCTTTC+TGG - chr3_1:82117859-82117878 None:intergenic 45.0%
GATTAGGCAAAGAGAGGGAA+TGG + chr3_1:82117980-82117999 Msa0380460:CDS 45.0%
TAGAGATGCAACTGCAATGG+AGG - chr3_1:82118006-82118025 None:intergenic 45.0%
GCTGTTAGTTGCAGCTTCTT+TGG - chr3_1:82118113-82118132 None:intergenic 45.0%
AACAGCTGAAGAGGCTAATC+AGG + chr3_1:82118127-82118146 Msa0380460:CDS 45.0%
GAGTAAGTACCTTGGAAAGC+AGG + chr3_1:82118222-82118241 Msa0380460:CDS 45.0%
TGCAAGTAACCTGCTTTCCA+AGG - chr3_1:82118234-82118253 None:intergenic 45.0%
CAGGTTACTTGCAGCTCAAA+AGG + chr3_1:82118241-82118260 Msa0380460:CDS 45.0%
TGCAGCTCAAAAGGAGATAG+AGG + chr3_1:82118250-82118269 Msa0380460:CDS 45.0%
AAAGGAGATAGAGGCTGCAA+AGG + chr3_1:82118259-82118278 Msa0380460:CDS 45.0%
! CAAAGAAAGTGTAACCCCAC+TGG - chr3_1:82118366-82118385 None:intergenic 45.0%
CAGTGGGGTTACACTTTCTT+TGG + chr3_1:82118364-82118383 Msa0380460:CDS 45.0%
AGCAGCTGCAATCCTTGTAT+TGG - chr3_1:82118438-82118457 None:intergenic 45.0%
CACTTCATCCAACTTCTCGA+AGG - chr3_1:82118501-82118520 None:intergenic 45.0%
GGAATCCTTGAAGATGGCAA+TGG + chr3_1:82118544-82118563 Msa0380460:CDS 45.0%
GGCAATGGAAAAAGCTGAGA+AGG + chr3_1:82118559-82118578 Msa0380460:CDS 45.0%
GGAAAAAGCTGAGAAGGCAA+AGG + chr3_1:82118565-82118584 Msa0380460:CDS 45.0%
AAAGCTGAGAAGGCAAAGGA+AGG + chr3_1:82118569-82118588 Msa0380460:CDS 45.0%
GGAGAGCTGAAAATGAGCAA+CGG + chr3_1:82118624-82118643 Msa0380460:CDS 45.0%
! GATTAGTTGCATACTGGGAC+CGG - chr3_1:82118742-82118761 None:intergenic 45.0%
!! GTGCAGGATTAGTTGCATAC+TGG - chr3_1:82118748-82118767 None:intergenic 45.0%
AGATGAAGGTGGATCATCAC+CGG + chr3_1:82118808-82118827 Msa0380460:CDS 45.0%
GAAGAAATCGTTGTTCCCAC+GGG + chr3_1:82118853-82118872 Msa0380460:CDS 45.0%
GCAAAGAACATCATAACCCG+TGG - chr3_1:82118872-82118891 None:intergenic 45.0%
! TATCTTGCCTCCCATCCTTT+TGG + chr3_1:82118963-82118982 Msa0380460:three_prime_UTR 45.0%
CACTCAGATCTCCAAAAGGA+TGG - chr3_1:82118977-82118996 None:intergenic 45.0%
GAGTCACTCAGATCTCCAAA+AGG - chr3_1:82118981-82119000 None:intergenic 45.0%
! TACTGGCACAGTACAGCTTT+TGG - chr3_1:82119018-82119037 None:intergenic 45.0%
ACAAATCGATCACCGTGTAC+TGG - chr3_1:82119035-82119054 None:intergenic 45.0%
!! CACGGTGATCGATTTGTGTA+TGG + chr3_1:82119038-82119057 Msa0380460:three_prime_UTR 45.0%
! TTCCTGCTCAGTGTTTTGTG+AGG + chr3_1:82119104-82119123 Msa0380460:three_prime_UTR 45.0%
! CACATGTGTGAGTATCGTGC+CGG - chr3_1:82113451-82113470 None:intergenic 50.0%
CAACCTGTCAGTGTCGTGTT+AGG + chr3_1:82113504-82113523 Msa0380460:intron 50.0%
CTCCATTATAAGGAGGGCTC+GGG - chr3_1:82114287-82114306 None:intergenic 50.0%
CCTCCATTATAAGGAGGGCT+CGG - chr3_1:82114288-82114307 None:intergenic 50.0%
! AGTAACGGAGAAGTGGAGTC+TGG + chr3_1:82114712-82114731 Msa0380460:CDS 50.0%
!! GAGATATCTTCTGGAGCACC+TGG - chr3_1:82114913-82114932 None:intergenic 50.0%
CTCTGACCAGCATGAATTGC+AGG + chr3_1:82114930-82114949 Msa0380460:CDS 50.0%
!! ATCAACCTGCTTGGTTTGGG+CGG - chr3_1:82115076-82115095 None:intergenic 50.0%
GACAGATTCGAATGGAGGTG+TGG - chr3_1:82115121-82115140 None:intergenic 50.0%
TCATCGAATCCAGACTGTGG+AGG + chr3_1:82115185-82115204 Msa0380460:CDS 50.0%
GTAATGAAAACCGGATCGGC+CGG + chr3_1:82115893-82115912 Msa0380460:intron 50.0%
GGACCTATGTCTGGTCTGTT+TGG + chr3_1:82115930-82115949 Msa0380460:intron 50.0%
TGCCCGGTTTAACAACAGAG+TGG - chr3_1:82115965-82115984 None:intergenic 50.0%
!! GGTTTTAGCGGTTTACTGCC+CGG - chr3_1:82115981-82116000 None:intergenic 50.0%
CCGCTAAAACCGTGCAAAAG+TGG + chr3_1:82115990-82116009 Msa0380460:intron 50.0%
AGTGGTCCAACCTATGGATC+CGG - chr3_1:82116024-82116043 None:intergenic 50.0%
!!! AACGGGGCTTTTGAAGCTTC+CGG + chr3_1:82116074-82116093 Msa0380460:intron 50.0%
GAAAACGCAGAACAAGCTGC+CGG - chr3_1:82116096-82116115 None:intergenic 50.0%
TAACAAGAGAAAGAGCGGGG+AGG + chr3_1:82116145-82116164 Msa0380460:intron 50.0%
ACTGGAGAAGGGAGAAGAAG+AGG + chr3_1:82116184-82116203 Msa0380460:intron 50.0%
GAGAAGGGAGAAGAAGAGGA+GGG + chr3_1:82116188-82116207 Msa0380460:intron 50.0%
AAGAAGAGGAGGGTAGACGT+GGG + chr3_1:82116198-82116217 Msa0380460:intron 50.0%
! CCTTCTAGGTTCTAGCCACT+AGG - chr3_1:82116373-82116392 None:intergenic 50.0%
CCTAGTGGCTAGAACCTAGA+AGG + chr3_1:82116370-82116389 Msa0380460:intron 50.0%
CGGGTTCAAGGTTCAAAGGT+TGG - chr3_1:82116675-82116694 None:intergenic 50.0%
CATTGAACCAGTGTAGGCAC+GGG - chr3_1:82116694-82116713 None:intergenic 50.0%
!! GCCTACACTGGTTCAATGTC+CGG + chr3_1:82116696-82116715 Msa0380460:intron 50.0%
ACCGGACATTGAACCAGTGT+AGG - chr3_1:82116700-82116719 None:intergenic 50.0%
GAGGCGCAATCTAGTAGAAC+AGG + chr3_1:82117047-82117066 Msa0380460:intron 50.0%
TGAAGAGCAACAGGCAAGAC+AGG + chr3_1:82117215-82117234 Msa0380460:CDS 50.0%
AGAGTGGAAGAGATGGAGCA+AGG + chr3_1:82117258-82117277 Msa0380460:CDS 50.0%
AGCAACTTCCAGTTGTGCCT+TGG - chr3_1:82117310-82117329 None:intergenic 50.0%
AGCAGCTGTGAAAGAAGAGC+TGG + chr3_1:82117362-82117381 Msa0380460:CDS 50.0%
AGAGCTGGATGCATTGCGTA+AGG + chr3_1:82117377-82117396 Msa0380460:CDS 50.0%
TCTAAACTGGAAGCAGCCTC+TGG + chr3_1:82117690-82117709 Msa0380460:CDS 50.0%
! GGTGATGATGAACTCTCGCA+AGG + chr3_1:82117774-82117793 Msa0380460:CDS 50.0%
GATGATGAACTCTCGCAAGG+AGG + chr3_1:82117777-82117796 Msa0380460:CDS 50.0%
CACAGATATACAAGCAGCCG+TGG + chr3_1:82117827-82117846 Msa0380460:CDS 50.0%
AGCCAGAAAGGAACTTGAGG+AGG + chr3_1:82117854-82117873 Msa0380460:CDS 50.0%
TGCCTCGATTAGGCAAAGAG+AGG + chr3_1:82117974-82117993 Msa0380460:CDS 50.0%
GCCTCGATTAGGCAAAGAGA+GGG + chr3_1:82117975-82117994 Msa0380460:CDS 50.0%
TCCCTCTCTTTGCCTAATCG+AGG - chr3_1:82117979-82117998 None:intergenic 50.0%
GCTGCAACTAACAGCTGAAG+AGG + chr3_1:82118118-82118137 Msa0380460:CDS 50.0%
AGCTGCTTGAGCAAGCAAGT+TGG - chr3_1:82118153-82118172 None:intergenic 50.0%
! CAAGGTACTTACTCCAGCCT+TGG - chr3_1:82118216-82118235 None:intergenic 50.0%
CAAGGCTGGAGTAAGTACCT+TGG + chr3_1:82118214-82118233 Msa0380460:CDS 50.0%
AAAGTGTAACCCCACTGGAC+GGG - chr3_1:82118361-82118380 None:intergenic 50.0%
! GAAAGTGTAACCCCACTGGA+CGG - chr3_1:82118362-82118381 None:intergenic 50.0%
CAGAAGAGCGAGCCAATACA+AGG + chr3_1:82118423-82118442 Msa0380460:CDS 50.0%
AATGAGCAACGGAGAAAGGC+TGG + chr3_1:82118635-82118654 Msa0380460:CDS 50.0%
! TAGCCCTGGGGCTTTTATTC+TGG - chr3_1:82118685-82118704 None:intergenic 50.0%
CAGATCTCCAAAAGGATGGG+AGG - chr3_1:82118973-82118992 None:intergenic 50.0%
AGCTGTACTGTGCCAGTACA+CGG + chr3_1:82119020-82119039 Msa0380460:three_prime_UTR 50.0%
GTCCTCACAAAACACTGAGC+AGG - chr3_1:82119109-82119128 None:intergenic 50.0%
GTTGTGGACCTTCTGATGCA+TGG + chr3_1:82119381-82119400 Msa0380460:three_prime_UTR 50.0%
TTTCGGGAAGGTTCCTGTTC+TGG + chr3_1:82119459-82119478 Msa0380460:three_prime_UTR 50.0%
! ATACTTATCCGCACCGGCAC+CGG + chr3_1:82113423-82113442 Msa0380460:intron 55.0%
GACCCTAACACGACACTGAC+AGG - chr3_1:82113510-82113529 None:intergenic 55.0%
CTCCCGAGCCCTCCTTATAA+TGG + chr3_1:82114282-82114301 Msa0380460:exon 55.0%
CCGAGCCCTCCTTATAATGG+AGG + chr3_1:82114285-82114304 Msa0380460:exon 55.0%
!! TCAACCTGCTTGGTTTGGGC+GGG - chr3_1:82115075-82115094 None:intergenic 55.0%
GGCTCATCGAATCCAGACTG+TGG + chr3_1:82115182-82115201 Msa0380460:CDS 55.0%
TGGCAGTTGCAGTCGTGCTT+TGG + chr3_1:82115457-82115476 Msa0380460:intron 55.0%
CAGTTGCAGTCGTGCTTTGG+TGG + chr3_1:82115460-82115479 Msa0380460:intron 55.0%
CCAGACATAGGTCCAGTTCC+CGG - chr3_1:82115924-82115943 None:intergenic 55.0%
AACCGTGCAAAAGTGGCGGT+TGG + chr3_1:82115997-82116016 Msa0380460:intron 55.0%
ACCGTGCAAAAGTGGCGGTT+GGG + chr3_1:82115998-82116017 Msa0380460:intron 55.0%
GGAGAAGGGAGAAGAAGAGG+AGG + chr3_1:82116187-82116206 Msa0380460:intron 55.0%
GAAGAAGAGGAGGGTAGACG+TGG + chr3_1:82116197-82116216 Msa0380460:intron 55.0%
GTGAGAAAACGGTCTGACCC+TGG + chr3_1:82116638-82116657 Msa0380460:intron 55.0%
GGCACGGGTTCAAGGTTCAA+AGG - chr3_1:82116679-82116698 None:intergenic 55.0%
CGAATCTAGCGTTGCAGCCA+AGG + chr3_1:82117290-82117309 Msa0380460:CDS 55.0%
GGATGCTGTAACTGCCTCCT+CGG - chr3_1:82117448-82117467 None:intergenic 55.0%
GGAGGCAGTTACAGCATCCA+AGG + chr3_1:82117449-82117468 Msa0380460:CDS 55.0%
GACTGCTCATGCTGCACACT+TGG + chr3_1:82117533-82117552 Msa0380460:CDS 55.0%
TGCTGCACACTTGGAAGCAG+AGG + chr3_1:82117542-82117561 Msa0380460:CDS 55.0%
AGCCGTGGAATCAGCCAGAA+AGG + chr3_1:82117842-82117861 Msa0380460:CDS 55.0%
GGCAGAAGCAGAACAAGCCA+AGG + chr3_1:82118196-82118215 Msa0380460:CDS 55.0%
GAAGCAGAACAAGCCAAGGC+TGG + chr3_1:82118200-82118219 Msa0380460:CDS 55.0%
AATGAAGTGGACCCGTCCAG+TGG + chr3_1:82118347-82118366 Msa0380460:CDS 55.0%
ATGAAGTGGACCCGTCCAGT+GGG + chr3_1:82118348-82118367 Msa0380460:CDS 55.0%
GCTTAGCAAACGAGCTCACG+AGG + chr3_1:82118400-82118419 Msa0380460:CDS 55.0%
!!! AAGCCCCAGGGCTAGTTTTG+AGG + chr3_1:82118691-82118710 Msa0380460:CDS 55.0%
!!! AGCCCCAGGGCTAGTTTTGA+GGG + chr3_1:82118692-82118711 Msa0380460:CDS 55.0%
!!! GGCTAGTTTTGAGGGGGGTA+AGG + chr3_1:82118700-82118719 Msa0380460:CDS 55.0%
! TGTGAGTATCGTGCCGGTGC+CGG - chr3_1:82113445-82113464 None:intergenic 60.0%
GGTCCAGTTCCCGGTTCAAC+CGG - chr3_1:82115915-82115934 None:intergenic 60.0%
CCGGGAACTGGACCTATGTC+TGG + chr3_1:82115921-82115940 Msa0380460:intron 60.0%
!!! GCCCAACCGCCACTTTTGCA+CGG - chr3_1:82116002-82116021 None:intergenic 60.0%
TGCAAAAGTGGCGGTTGGGC+CGG + chr3_1:82116002-82116021 Msa0380460:intron 60.0%
GTTGGGCCGGATCCATAGGT+TGG + chr3_1:82116015-82116034 Msa0380460:intron 60.0%
GGTTGGACAGGGTTCGACCA+GGG - chr3_1:82116658-82116677 None:intergenic 60.0%
AGGTTGGACAGGGTTCGACC+AGG - chr3_1:82116659-82116678 None:intergenic 60.0%
CCAGTGTAGGCACGGGTTCA+AGG - chr3_1:82116687-82116706 None:intergenic 60.0%
CCTTGAACCCGTGCCTACAC+TGG + chr3_1:82116684-82116703 Msa0380460:intron 60.0%
CGTTGCAGCCAAGGCACAAC+TGG + chr3_1:82117299-82117318 Msa0380460:CDS 60.0%
TGAAGTGGACCCGTCCAGTG+GGG + chr3_1:82118349-82118368 Msa0380460:CDS 60.0%
CGGAGAAAGGCTGGTGAGTC+TGG + chr3_1:82118644-82118663 Msa0380460:CDS 60.0%
AAGGCTGGTGAGTCTGGCCA+AGG + chr3_1:82118650-82118669 Msa0380460:CDS 60.0%
TGGTGAGTCTGGCCAAGGAG+TGG + chr3_1:82118655-82118674 Msa0380460:CDS 60.0%
!!! GCCCCAGGGCTAGTTTTGAG+GGG + chr3_1:82118693-82118712 Msa0380460:CDS 60.0%
CCCCCTCAAAACTAGCCCTG+GGG - chr3_1:82118697-82118716 None:intergenic 60.0%
!!! CCCCAGGGCTAGTTTTGAGG+GGG + chr3_1:82118694-82118713 Msa0380460:CDS 60.0%
CCCCCCTCAAAACTAGCCCT+GGG - chr3_1:82118698-82118717 None:intergenic 60.0%
!!! CCCAGGGCTAGTTTTGAGGG+GGG + chr3_1:82118695-82118714 Msa0380460:CDS 60.0%
ACCCCCCTCAAAACTAGCCC+TGG - chr3_1:82118699-82118718 None:intergenic 60.0%
!! GGGCTCGGGAGTGCTAACAG+CGG - chr3_1:82114273-82114292 None:intergenic 65.0%
CTCACCCGCCCAAACCAAGC+AGG + chr3_1:82115068-82115087 Msa0380460:CDS 65.0%
ACCGGATCGGCCGGTTGAAC+CGG + chr3_1:82115902-82115921 Msa0380460:intron 65.0%
!! TATCGTGCCGGTGCCGGTGC+CGG - chr3_1:82113439-82113458 None:intergenic 70.0%
CCCGGTTCAACCGGCCGATC+CGG - chr3_1:82115906-82115925 None:intergenic 70.0%
CCGGATCGGCCGGTTGAACC+GGG + chr3_1:82115903-82115922 Msa0380460:intron 70.0%
CGGCCGGTTGAACCGGGAAC+TGG + chr3_1:82115909-82115928 Msa0380460:intron 70.0%
GGCGGTTGGGCCGGATCCAT+AGG + chr3_1:82116011-82116030 Msa0380460:intron 70.0%
!! ATCCGCACCGGCACCGGCAC+CGG + chr3_1:82113429-82113448 Msa0380460:intron 75.0%
!!! TGCCGGTGCCGGTGCCGGTG+CGG - chr3_1:82113434-82113453 None:intergenic 80.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 82112880 82119549 82112880 ID=Msa0380460;Name=Msa0380460
chr3_1 mRNA 82112880 82119549 82112880 ID=Msa0380460-mRNA-1;Parent=Msa0380460;Name=Msa0380460-mRNA-1;_AED=0.25;_eAED=0.25;_QI=375|1|1|1|0.5|0.33|3|624|927
chr3_1 exon 82112880 82113216 82112880 ID=Msa0380460-mRNA-1:exon:20942;Parent=Msa0380460-mRNA-1
chr3_1 exon 82114263 82115206 82114263 ID=Msa0380460-mRNA-1:exon:20943;Parent=Msa0380460-mRNA-1
chr3_1 exon 82117048 82119549 82117048 ID=Msa0380460-mRNA-1:exon:20944;Parent=Msa0380460-mRNA-1
chr3_1 five_prime_UTR 82112880 82113216 82112880 ID=Msa0380460-mRNA-1:five_prime_utr;Parent=Msa0380460-mRNA-1
chr3_1 five_prime_UTR 82114263 82114300 82114263 ID=Msa0380460-mRNA-1:five_prime_utr;Parent=Msa0380460-mRNA-1
chr3_1 CDS 82114301 82115206 82114301 ID=Msa0380460-mRNA-1:cds;Parent=Msa0380460-mRNA-1
chr3_1 CDS 82117048 82118925 82117048 ID=Msa0380460-mRNA-1:cds;Parent=Msa0380460-mRNA-1
chr3_1 three_prime_UTR 82118926 82119549 82118926 ID=Msa0380460-mRNA-1:three_prime_utr;Parent=Msa0380460-mRNA-1
Gene Sequence

>Msa0380460

ATGGAGGATGTTCAAGACAAGTTGCCCTCTGACTCCTCTACAAAAATTGCTGAAGAGACACCACTAGCAGAACATATTGAAGACATATTACCCTCTGAATCCTCTTCAAAAGTTACTGAAGAGATACCACTAGCAGAACATGTTGAAGACATGTTGCCCTCTGATTCTGAATCCTCTTCAAAAGTTACTGAAGAGACACATATGGCTGAACACGTTGAAGACAAGCTACCATCTGAATCCCCTTCAAAAATTTCTGAAGAGACGCCACTGGCAGAACATGTTGAAGACAATCTACTCTCTGAGTGCTCTACAAAAGTTACTGAGACACAACTGATGGAATCCTCTGAAGAAAATACCGAAGTGGTAAACCCACCACATAATCAATCTTCCTCAGAACTTCCAATTCCACTTAGTAACGGAGAAGTGGAGTCTGGCTCTCACTTGACAGTAAATGAGCTCCCTGAATTATCAGTGTTGCCAAATGTTTCTGATGGTCAAACTATAATACAAGATGAGGATGTTTCTGTAGATAATTCAGCTTCAGTTCCAAATGATACAGTGGATGTGACAGAAACAAGCGACCAGCTAAATTTGGTTGAAGATTCTAAACCAGGTGCTCCAGAAGATATCTCTGACCAGCATGAATTGCAGGTTGATGTTACTAATGTCGCTGCAGATAATGAGATTAGACTTTCAGCTTCCTCTTCTGAAACAAAAGATTTGTTAAATGATCTTAATGAAGTAAAGATGTCTTCTGGAGCAGTTGACTCACCCGCCCAAACCAAGCAGGTTGATGTAAAAAGAGGTCTTATTGATACCACACCTCCATTCGAATCTGTCAAGGAAGCTGTTTCTAAGTTTGGAGGAATTGTCGATTGGAAGGCTCATCGAATCCAGACTGTGGAGAGGCGCAATCTAGTAGAACAGGAACTTGATAAAGCAAATGAAGAGATACCAGAATACAGAAAACAAGCAGAGACGGCTGAACAGACGAAAAATCAAGTACTAAAGGAGCTGGACAGCACCAAGAGACTTATAGAAGAGTTAAAGCTTAACCTAGAGAGAGCACAAACTGAAGAGCAACAGGCAAGACAGGACTCTGAACTTGCAAAGCTCAGAGTGGAAGAGATGGAGCAAGGTATTGCAGACGAATCTAGCGTTGCAGCCAAGGCACAACTGGAAGTTGCTAAAGCTAGGTATACGGCAGCTATTACAGATTTAGCAGCTGTGAAAGAAGAGCTGGATGCATTGCGTAAGGAATATGCTTCCTTAGTGACTGATAGAGATGAAGCTATTAAGAAAGCCGAGGAGGCAGTTACAGCATCCAAGGAAGTAGAGAAGTCAGTGGAAGATTTAACTATTGAACTAATAGCCACAAAAGAGTCATTAGAGACTGCTCATGCTGCACACTTGGAAGCAGAGGAACAAAGAATAGGAACAGTCATGGCAAGAGATCAAGATTCACTCAATTGGGAGAAGGAACTTAAACAGGCAGAAGAAGAGCTCCAGAGAATCAATGAGCAAATGTTGTCTGCAAAGGATCTCAAATCTAAACTGGAAGCAGCCTCTGGTTTGCTGCTTGATTTGAAAGCTAAATTAACTGTTTATATGGAATCAAAGTTAAAGCAAGAAGGTGATGATGAACTCTCGCAAGGAGGCCAAGAAGAACCAGAAAAGAAGACACACACAGATATACAAGCAGCCGTGGAATCAGCCAGAAAGGAACTTGAGGAGGTAAAACTAAACATAGAGAAAGCAAATGCTGAGGTTAGTTGCTTGAAGCTAGCTGCTACATCTTTAAAATCAGAACTGGAACAAGAAAAATCATCTCTTGCCTCGATTAGGCAAAGAGAGGGAATGGCCTCCATTGCAGTTGCATCTCTAGAAGCTGAATTGGACAAGACTAGATCAGAAATAGCTTTGGTTCAAATGAAGGAGAAAGAAGCCAAAGAACAAATGACCGAACTTCCAAAGAAGCTGCAACTAACAGCTGAAGAGGCTAATCAGGCCAACTTGCTTGCTCAAGCAGCTCGTGAAGAACTGCAGAAAGTAAAGGCAGAAGCAGAACAAGCCAAGGCTGGAGTAAGTACCTTGGAAAGCAGGTTACTTGCAGCTCAAAAGGAGATAGAGGCTGCAAAGGCTTCTGAAAAGTTGGCAATAGCAGCAATTAAAGCATTGCAAGAGAGTGAAGCAAATAGAAGCAAAAATGAAGTGGACCCGTCCAGTGGGGTTACACTTTCTTTGGATGAGTACTATGAGCTTAGCAAACGAGCTCACGAGGCAGAAGAGCGAGCCAATACAAGGATTGCAGCTGCTAATTCTGAAGTTGAGGTAGCTAAGGAGTCTGAACTGAAATCCTTCGAGAAGTTGGATGAAGTGAATAGAGAGATAGCTGCTAGAAGGGAATCCTTGAAGATGGCAATGGAAAAAGCTGAGAAGGCAAAGGAAGGTAAATTAGGTGTAGAACAAGAACTTAGAAGGTGGAGAGCTGAAAATGAGCAACGGAGAAAGGCTGGTGAGTCTGGCCAAGGAGTGGTTAACCAGAATAAAAGCCCCAGGGCTAGTTTTGAGGGGGGTAAGGAAGCAAATAATTTTGACCGGTCCCAGTATGCAACTAATCCTGCACAATATTTGTCAAGTCCGAAGACTTATATGCATGCAGAAAAAGATGAAGGTGGATCATCACCGGAATCAAAACATGGAAAAAAGAAGAAGAAATCGTTGTTCCCACGGGTTATGATGTTCTTTGCTAGAAGAAAAACACATTCAAACAAGTCAGGGTAA
Protein sequence

>Msa0380460

MEDVQDKLPSDSSTKIAEETPLAEHIEDILPSESSSKVTEEIPLAEHVEDMLPSDSESSSKVTEETHMAEHVEDKLPSESPSKISEETPLAEHVEDNLLSECSTKVTETQLMESSEENTEVVNPPHNQSSSELPIPLSNGEVESGSHLTVNELPELSVLPNVSDGQTIIQDEDVSVDNSASVPNDTVDVTETSDQLNLVEDSKPGAPEDISDQHELQVDVTNVAADNEIRLSASSSETKDLLNDLNEVKMSSGAVDSPAQTKQVDVKRGLIDTTPPFESVKEAVSKFGGIVDWKAHRIQTVERRNLVEQELDKANEEIPEYRKQAETAEQTKNQVLKELDSTKRLIEELKLNLERAQTEEQQARQDSELAKLRVEEMEQGIADESSVAAKAQLEVAKARYTAAITDLAAVKEELDALRKEYASLVTDRDEAIKKAEEAVTASKEVEKSVEDLTIELIATKESLETAHAAHLEAEEQRIGTVMARDQDSLNWEKELKQAEEELQRINEQMLSAKDLKSKLEAASGLLLDLKAKLTVYMESKLKQEGDDELSQGGQEEPEKKTHTDIQAAVESARKELEEVKLNIEKANAEVSCLKLAATSLKSELEQEKSSLASIRQREGMASIAVASLEAELDKTRSEIALVQMKEKEAKEQMTELPKKLQLTAEEANQANLLAQAAREELQKVKAEAEQAKAGVSTLESRLLAAQKEIEAAKASEKLAIAAIKALQESEANRSKNEVDPSSGVTLSLDEYYELSKRAHEAEERANTRIAAANSEVEVAKESELKSFEKLDEVNREIAARRESLKMAMEKAEKAKEGKLGVEQELRRWRAENEQRRKAGESGQGVVNQNKSPRASFEGGKEANNFDRSQYATNPAQYLSSPKTYMHAEKDEGGSSPESKHGKKKKKSLFPRVMMFFARRKTHSNKSG*