AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0380480

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0380480 MtrunA17_Chr3g0133891 95.354 947 24 1 1 927 1 947 0.0 1779
Msa0380480 MtrunA17_Chr1g0153431 66.057 766 236 7 173 927 167 919 0.0 906
Msa0380480 MtrunA17_Chr8g0369191 51.982 681 265 13 256 925 6 635 3.17e-171 512
Msa0380480 MtrunA17_Chr3g0102681 29.412 595 386 8 249 836 4 571 1.45e-33 138
Msa0380480 MtrunA17_Chr4g0013151 34.091 264 169 2 574 836 229 488 1.40e-26 116
Msa0380480 MtrunA17_Chr7g0244501 31.047 277 187 2 575 851 177 449 1.55e-26 115
Msa0380480 MtrunA17_Chr2g0290651 28.718 585 349 14 271 831 22 562 2.24e-26 115
Msa0380480 MtrunA17_Chr5g0446731 28.892 668 414 16 269 921 21 642 3.43e-23 105
Msa0380480 MtrunA17_Chr3g0078801 29.630 594 373 13 269 846 21 585 5.47e-20 95.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0380480 AT2G26570.1 67.311 673 209 3 252 924 146 807 0.0 838
Msa0380480 AT2G26570.2 67.311 673 209 3 252 924 146 807 0.0 838
Msa0380480 AT4G33390.1 61.061 660 226 6 264 922 149 778 0.0 692
Msa0380480 AT5G42880.1 48.817 676 303 7 251 925 118 751 1.38e-175 528
Msa0380480 AT1G45545.1 47.904 668 267 10 270 925 154 752 2.40e-169 512
Msa0380480 AT1G45545.2 47.904 668 267 10 270 925 155 753 2.45e-169 512
Msa0380480 AT5G55860.1 27.697 686 423 15 253 922 6 634 3.71e-21 99.8
Msa0380480 AT2G38370.2 28.173 323 199 5 519 841 113 402 1.33e-15 81.6
Msa0380480 AT2G38370.1 28.173 323 199 5 519 841 96 385 2.21e-15 80.9
Msa0380480 AT1G12150.2 23.902 569 378 8 269 829 19 540 7.67e-11 66.2
Msa0380480 AT1G12150.1 23.902 569 378 8 269 829 19 540 7.67e-11 66.2

Find 232 sgRNAs with CRISPR-Local

Find 448 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TACCTCCTCAAGTTCCTTTC+TGG 0.088150 3_1:-82127053 Msa0380470:intron
CAATGCACATAATTTCAATT+TGG 0.147472 3_1:-82128125 Msa0380470:intron
CACCTGATTAGGAAGTAATT+AGG 0.198633 3_1:-82122280 Msa0380470:intron
AGCTAAATTAACTGTTTATA+TGG 0.204674 3_1:+82126928 Msa0380480:CDS
AACAAGCGACCAGCTAAATT+TGG 0.239282 3_1:+82124061 Msa0380480:CDS
CAGTGGGGTTACACTTTCTT+TGG 0.239820 3_1:+82127561 Msa0380480:CDS
TATCTTGCCTCCCATCCTTT+TGG 0.256194 3_1:+82128160 Msa0380480:three_prime_UTR
GCTGTTAGTTGCAGCTTCTT+TGG 0.261793 3_1:-82127307 Msa0380470:intron
TTTCGGGAAGGTTCCTGTTC+TGG 0.262334 3_1:+82128655 Msa0380480:three_prime_UTR
TCAATCAATATAGTGAGTTT+TGG 0.270356 3_1:-82128510 Msa0380470:intron
CACTGACTTCTCTACTTCCT+TGG 0.274617 3_1:-82126663 Msa0380470:intron
AAGGAAGCTGTTTCTAAGTT+TGG 0.278467 3_1:+82124329 Msa0380480:CDS
TTGTGAGGACTTAAGAAAAT+AGG 0.279719 3_1:+82128316 Msa0380480:three_prime_UTR
CTTGAACATCCTCCATTATA+AGG 0.281721 3_1:-82123482 Msa0380470:intron
AAGTTCGGTCATTTGTTCTT+TGG 0.298214 3_1:-82127284 Msa0380470:intron
TGAGATTGTGGAAAAGTAAA+AGG 0.304092 3_1:-82122181 Msa0380470:intron
CTCACTTGATGGATGGTATA+CGG 0.304973 3_1:+82128277 Msa0380480:three_prime_UTR
CGGAGAAAGGCTGGTGAGTC+TGG 0.309159 3_1:+82127841 Msa0380480:CDS
TTTGGCAACACTGATAATTC+AGG 0.310576 3_1:-82123948 Msa0380470:intron
AATGCACATAATTTCAATTT+GGG 0.317639 3_1:-82128124 Msa0380470:intron
GAGATCAAGATTCACTCAAT+TGG 0.319924 3_1:+82126789 Msa0380480:CDS
TACATCAACCTGCTTGGTTT+GGG 0.329348 3_1:-82124264 Msa0380470:intron
TTACATCAACCTGCTTGGTT+TGG 0.331984 3_1:-82124265 Msa0380470:intron
TGCATCTCTAGAAGCTGAAT+TGG 0.337620 3_1:+82127213 Msa0380480:CDS
CTCTGACCAGCATGAATTGC+AGG 0.342985 3_1:+82124118 Msa0380480:CDS
CTCCCGAGCCCTCCTTATAA+TGG 0.343343 3_1:+82123470 Msa0380480:exon
AATGAAGTAAAGATGTCTTC+TGG 0.344172 3_1:+82124224 Msa0380480:CDS
AAGGCAAAGGAAGGTAAATT+AGG 0.350324 3_1:+82127775 Msa0380480:CDS
AGGAAATTCAAACAGAATAA+TGG 0.351259 3_1:-82128724 Msa0380470:intron
CGTTGCAGCCAAGGCACAAC+TGG 0.354618 3_1:+82126496 Msa0380480:CDS
AACAGCTGAAGAGGCTAATC+AGG 0.354780 3_1:+82127324 Msa0380480:CDS
TCTCCGTTACTAAGTGGAAT+TGG 0.361118 3_1:-82123888 Msa0380470:intron
ACATTTGCTCATTGATTCTC+TGG 0.363605 3_1:-82126844 Msa0380470:intron
GTCACATCCACTGTATCATT+TGG 0.367014 3_1:-82124035 Msa0380470:intron
ACTTCGCAAAACACCTGATT+AGG 0.370968 3_1:-82122291 Msa0380470:intron
GTGCAGGATTAGTTGCATAC+TGG 0.374116 3_1:-82127942 Msa0380470:intron
ATTGGATTATACTCACTTGA+TGG 0.379193 3_1:+82128266 Msa0380480:three_prime_UTR
ATATTGATACTAATTATTAG+AGG 0.380745 3_1:-82122216 Msa0380470:intron
CTTCAGTTTGTGCTCTCTCT+AGG 0.384605 3_1:-82126394 Msa0380470:intron
TAACTCTTCTATAAGTCTCT+TGG 0.385789 3_1:-82126363 Msa0380470:intron
AAAGGATCTCAAATCTAAAC+TGG 0.393667 3_1:+82126874 Msa0380480:CDS
TGCTGGTCAGAGATATCTTC+TGG 0.394578 3_1:-82124107 Msa0380470:intron
TTGCAGCTTCTTTGGAAGTT+CGG 0.399807 3_1:-82127299 Msa0380470:intron
AGCACAAACTGAAGAGCAAC+AGG 0.400039 3_1:+82126403 Msa0380480:CDS
TGCATGGAATATACACATAA+AGG 0.407863 3_1:+82128593 Msa0380480:three_prime_UTR
AGCAGCTGCAATCCTTGTAT+TGG 0.408027 3_1:-82127632 Msa0380470:intron
CACCTTCAACCGTTGATGTT+CGG 0.408491 3_1:-82122399 Msa0380470:intron
CACGGTGATCGATTTGTGTA+TGG 0.409462 3_1:+82128235 Msa0380480:three_prime_UTR
AGCAACTTCCAGTTGTGCCT+TGG 0.410573 3_1:-82126504 Msa0380470:intron
TCCCTAATTACTTCCTAATC+AGG 0.415170 3_1:+82122278 Msa0380480:five_prime_UTR
GTTTGACCATCAGAAACATT+TGG 0.415469 3_1:-82123966 Msa0380470:intron
AAAGAAAAGAAAAGAAAAGA+AGG 0.416352 3_1:-82122151 Msa0380470:intron
ACCTGATTAGGAAGTAATTA+GGG 0.419012 3_1:-82122279 Msa0380470:intron
AATAGCTTTGGTTCAAATGA+AGG 0.419296 3_1:+82127252 Msa0380480:CDS
TACTGGCACAGTACAGCTTT+TGG 0.420919 3_1:-82128212 Msa0380470:intron
GAAAATAGGTTCGTCTATGT+TGG 0.421649 3_1:+82128330 Msa0380480:three_prime_UTR
CACAACTAGTGAACTGTGAA+TGG 0.421857 3_1:-82128560 Msa0380470:intron
AAAACACATTCAAACAAGTC+AGG 0.424040 3_1:+82128096 Msa0380480:CDS
CAGGTTACTTGCAGCTCAAA+AGG 0.424256 3_1:+82127438 Msa0380480:CDS
ATAGAGAGATAGCTGCTAGA+AGG 0.425984 3_1:+82127719 Msa0380480:CDS
TCTGCATGCATATAAGTCTT+CGG 0.426670 3_1:-82127979 Msa0380470:intron
CAAGGTACTTACTCCAGCCT+TGG 0.427633 3_1:-82127410 Msa0380470:intron
GACTGCTCATGCTGCACACT+TGG 0.430032 3_1:+82126730 Msa0380480:CDS
TTGGGAGAAGGAACTTAAAC+AGG 0.433707 3_1:+82126808 Msa0380480:CDS
AATCTTCAACCAAATTTAGC+TGG 0.435466 3_1:-82124070 Msa0380470:intron
ATCATCAAATGATCCAGAAC+AGG 0.443786 3_1:-82128668 Msa0380470:intron
CCTCCATTATAAGGAGGGCT+CGG 0.447164 3_1:-82123473 Msa0380470:intron
TGCAAAGGCTTCTGAAAAGT+TGG 0.447891 3_1:+82127471 Msa0380480:CDS
TTCCTTTCTGGCTGATTCCA+CGG 0.450504 3_1:-82127041 Msa0380470:intron
TTGTGTATGGTTTGACGGAT+TGG 0.455348 3_1:+82128248 Msa0380480:three_prime_UTR
TATTCTGGTTAACCACTCCT+TGG 0.457248 3_1:-82127864 Msa0380470:intron
AGTTGCTAAAGCTAGGTATA+CGG 0.460121 3_1:+82126520 Msa0380480:CDS
CGAATCTAGCGTTGCAGCCA+AGG 0.460134 3_1:+82126487 Msa0380480:CDS
GACTAGATCAGAAATAGCTT+TGG 0.461244 3_1:+82127240 Msa0380480:CDS
AGATCAAGATTCACTCAATT+GGG 0.461638 3_1:+82126790 Msa0380480:CDS
ACTGAAATCCTTCGAGAAGT+TGG 0.462011 3_1:+82127687 Msa0380480:CDS
TCGATTTGTGTATGGTTTGA+CGG 0.462652 3_1:+82128243 Msa0380480:three_prime_UTR
TGCAGGATTAGTTGCATACT+GGG 0.468145 3_1:-82127941 Msa0380470:intron
AAAATAGGTTCGTCTATGTT+GGG 0.475771 3_1:+82128331 Msa0380480:three_prime_UTR
GTGTAGAACAAGAACTTAGA+AGG 0.477088 3_1:+82127797 Msa0380480:CDS
AATCATCTCTTGCCTCGATT+AGG 0.477119 3_1:+82127161 Msa0380480:CDS
GAAGCTGTTTCTAAGTTTGG+AGG 0.479133 3_1:+82124332 Msa0380480:CDS
ATCAACCTGCTTGGTTTGGG+CGG 0.480255 3_1:-82124261 Msa0380470:intron
GAAGCAGAACAAGCCAAGGC+TGG 0.481127 3_1:+82127397 Msa0380480:CDS
GAGGCGCAATCTAGTAGAAC+AGG 0.482497 3_1:+82126244 Msa0380480:intron
TACATCTTTAAAATCAGAAC+TGG 0.483592 3_1:+82127129 Msa0380480:CDS
TTCTGAAGTTGAGGTAGCTA+AGG 0.484672 3_1:+82127657 Msa0380480:CDS
TGAAAATGAGCAACGGAGAA+AGG 0.485253 3_1:+82127828 Msa0380480:CDS
GAGTAAGTACCTTGGAAAGC+AGG 0.485484 3_1:+82127419 Msa0380480:CDS
ATCTGAGTGACTCGAAATGT+TGG 0.487709 3_1:+82128185 Msa0380480:three_prime_UTR
TGAAGAGCAACAGGCAAGAC+AGG 0.487822 3_1:+82126412 Msa0380480:CDS
ACATATATACCTCCACAGTC+TGG 0.487953 3_1:-82124382 Msa0380470:intron
TCTAAACTGGAAGCAGCCTC+TGG 0.489857 3_1:+82126887 Msa0380480:CDS
GGACTTGACAAATATTGTGC+AGG 0.492349 3_1:-82127958 Msa0380470:intron
TGCAGCTCAAAAGGAGATAG+AGG 0.495277 3_1:+82127447 Msa0380480:CDS
GTGATTTGAAGCACTTTGAA+TGG 0.495742 3_1:+82128472 Msa0380480:three_prime_UTR
ATGAAATTAAAGTGAGATTG+TGG 0.499806 3_1:-82122193 Msa0380470:intron
AAATCAAGTACTAAAGGAGC+TGG 0.502391 3_1:+82126334 Msa0380480:CDS
CACTCAGATCTCCAAAAGGA+TGG 0.503255 3_1:-82128171 Msa0380470:intron
AGTAACGGAGAAGTGGAGTC+TGG 0.504133 3_1:+82123900 Msa0380480:CDS
TAGAGAGATAGCTGCTAGAA+GGG 0.509873 3_1:+82127720 Msa0380480:CDS
TCAACCTGCTTGGTTTGGGC+GGG 0.510437 3_1:-82124260 Msa0380470:intron
TTCCGAACATCAACGGTTGA+AGG 0.511277 3_1:+82122397 Msa0380480:five_prime_UTR
ACAAATCGATCACCGTGTAC+TGG 0.512599 3_1:-82128229 Msa0380470:intron
TTCATCTCTATCAGTCACTA+AGG 0.513821 3_1:-82126606 Msa0380470:intron
GGAGGCAGTTACAGCATCCA+AGG 0.516525 3_1:+82126646 Msa0380480:CDS
CAGAAGAGCGAGCCAATACA+AGG 0.517906 3_1:+82127620 Msa0380480:CDS
CTCCATTATAAGGAGGGCTC+GGG 0.518464 3_1:-82123472 Msa0380470:intron
AATGAGCAACGGAGAAAGGC+TGG 0.523536 3_1:+82127832 Msa0380480:CDS
GAAGCAGAGGAACAAAGAAT+AGG 0.523697 3_1:+82126752 Msa0380480:CDS
TTGGTTGAAGATTCTAAACC+AGG 0.523832 3_1:+82124080 Msa0380480:CDS
TCACTATATTGATTGATACT+AGG 0.524588 3_1:+82128517 Msa0380480:three_prime_UTR
TGCTGCACACTTGGAAGCAG+AGG 0.524988 3_1:+82126739 Msa0380480:CDS
CATTCACAGTTCACTAGTTG+TGG 0.530459 3_1:+82128561 Msa0380480:three_prime_UTR
TGGAGGAATTGTCGATTGGA+AGG 0.530992 3_1:+82124349 Msa0380480:CDS
GAGATATCTTCTGGAGCACC+TGG 0.532106 3_1:-82124098 Msa0380470:intron
AGTTACTGAAGAGACACATA+TGG 0.533215 3_1:+82123671 Msa0380480:CDS
AGCAGCTGTGAAAGAAGAGC+TGG 0.533861 3_1:+82126559 Msa0380480:CDS
TCCACTTCTCCGTTACTAAG+TGG 0.535969 3_1:-82123894 Msa0380470:intron
TTGGCAACACTGATAATTCA+GGG 0.536150 3_1:-82123947 Msa0380470:intron
ATGTGGTGGGTTTACCACTT+CGG 0.537990 3_1:-82123844 Msa0380470:intron
TGATGGATCTAATCTGAGGT+AGG 0.538879 3_1:+82122091 None:intergenic
GAAGAAATCGTTGTTCCCAC+GGG 0.541661 3_1:+82128050 Msa0380480:CDS
AGGAAGATTGATTATGTGGT+GGG 0.543145 3_1:-82123857 Msa0380470:intron
AGAAGAAATCGTTGTTCCCA+CGG 0.544605 3_1:+82128049 Msa0380480:CDS
GATTATACTCACTTGATGGA+TGG 0.544785 3_1:+82128270 Msa0380480:three_prime_UTR
CACTTCATCCAACTTCTCGA+AGG 0.544839 3_1:-82127695 Msa0380470:intron
AGCTGCTAATTCTGAAGTTG+AGG 0.545403 3_1:+82127648 Msa0380480:CDS
AGCCGTGGAATCAGCCAGAA+AGG 0.546535 3_1:+82127039 Msa0380480:CDS
TGTGGAAAAGTAAAAGGAGG+TGG 0.547393 3_1:-82122175 Msa0380470:intron
TCTGAGGAAGATTGATTATG+TGG 0.549334 3_1:-82123861 Msa0380470:intron
TCCTTGACAGATTCGAATGG+AGG 0.549570 3_1:-82124311 Msa0380470:intron
GGATGCTGTAACTGCCTCCT+CGG 0.551757 3_1:-82126642 Msa0380470:intron
ATGAAGTGGACCCGTCCAGT+GGG 0.555823 3_1:+82127545 Msa0380480:CDS
GCAACAGGCAAGACAGGACT+CGG 0.556999 3_1:+82126418 Msa0380480:CDS
AATACACGAGTGAAAGGAAA+CGG 0.558234 3_1:-82122374 Msa0380470:intron
AAAGTGTAACCCCACTGGAC+GGG 0.558997 3_1:-82127555 Msa0380470:intron
AGTTTGGAGGAATTGTCGAT+TGG 0.559426 3_1:+82124345 Msa0380480:CDS
TGAGCAAATGTTGTCTGCAA+AGG 0.559704 3_1:+82126856 Msa0380480:CDS
GTCCTCACAAAACACTGAGC+AGG 0.559854 3_1:-82128303 Msa0380470:intron
TCCACTTAGTAACGGAGAAG+TGG 0.562086 3_1:+82123893 Msa0380480:CDS
GATTAGTTGCATACTGGGAC+CGG 0.562727 3_1:-82127936 Msa0380470:intron
TGAAGAGGATTCAGAATCAG+AGG 0.565843 3_1:-82123646 Msa0380470:intron
TGAAGAACTGCAGAAAGTAA+AGG 0.567540 3_1:+82127372 Msa0380480:CDS
TCGGAAAATACACGAGTGAA+AGG 0.570436 3_1:-82122380 Msa0380470:intron
ACAACTAGTGAACTGTGAAT+GGG 0.572318 3_1:-82128559 Msa0380470:intron
GATTAGGCAAAGAGAGGGAA+TGG 0.573233 3_1:+82127177 Msa0380480:CDS
TAGAAGGGAATCCTTGAAGA+TGG 0.574172 3_1:+82127735 Msa0380480:CDS
AACATCCTCCATTATAAGGA+GGG 0.578229 3_1:-82123478 Msa0380470:intron
TCTTCAATATGTTCTGCTAG+TGG 0.579090 3_1:-82123549 Msa0380470:intron
AGATGAAGGTGGATCATCAC+CGG 0.581928 3_1:+82128005 Msa0380480:CDS
TAGAGATGCAACTGCAATGG+AGG 0.583713 3_1:-82127200 Msa0380470:intron
AGCTGCTTGAGCAAGCAAGT+TGG 0.584333 3_1:-82127347 Msa0380470:intron
GAAGAGGATTCAGAATCAGA+GGG 0.585481 3_1:-82123645 Msa0380470:intron
GATGGATCTAATCTGAGGTA+GGG 0.586248 3_1:+82122092 None:intergenic
AATTTCTGAAGAGACGCCAC+TGG 0.586404 3_1:+82123737 Msa0380480:CDS
CAAAGAAAGTGTAACCCCAC+TGG 0.586929 3_1:-82127560 Msa0380470:intron
GTTGTGGACCTTCTGATGCA+TGG 0.587074 3_1:+82128577 Msa0380480:three_prime_UTR
CACAGATATACAAGCAGCCG+TGG 0.587150 3_1:+82127024 Msa0380480:CDS
TGTATATTCCATGCATCAGA+AGG 0.587934 3_1:-82128585 Msa0380470:intron
TGCAAGTAACCTGCTTTCCA+AGG 0.587944 3_1:-82127428 Msa0380470:intron
GCTGCAACTAACAGCTGAAG+AGG 0.588648 3_1:+82127315 Msa0380480:CDS
AGAGCTGGATGCATTGCGTA+AGG 0.589983 3_1:+82126574 Msa0380480:CDS
CTCACCCGCCCAAACCAAGC+AGG 0.590022 3_1:+82124256 Msa0380480:CDS
CATCAACCTGCAATTCATGC+TGG 0.590549 3_1:-82124124 Msa0380470:intron
GAGTCACTCAGATCTCCAAA+AGG 0.591878 3_1:-82128175 Msa0380470:intron
TCTTCAACATGTTCTGCTAG+TGG 0.593335 3_1:-82123615 Msa0380470:intron
GAATCAAAGTTAAAGCAAGA+AGG 0.593429 3_1:+82126950 Msa0380480:CDS
GGCAGAAGCAGAACAAGCCA+AGG 0.593446 3_1:+82127393 Msa0380480:CDS
TTAACCAGAATAAAAGCCCC+AGG 0.593700 3_1:+82127875 Msa0380480:CDS
TCTTCAACATGTTCTGCCAG+TGG 0.594746 3_1:-82123753 Msa0380470:intron
ACAAATCTTTACACAAGCCG+AGG 0.596314 3_1:-82128407 Msa0380470:intron
AGTTACTGAGACACAACTGA+TGG 0.596510 3_1:+82123803 Msa0380480:CDS
AGCTGTACTGTGCCAGTACA+CGG 0.596548 3_1:+82128217 Msa0380480:three_prime_UTR
GGAATCCTTGAAGATGGCAA+TGG 0.598116 3_1:+82127741 Msa0380480:CDS
AAAGGAGATAGAGGCTGCAA+AGG 0.598223 3_1:+82127456 Msa0380480:CDS
TCAAACTATAATACAAGATG+AGG 0.599392 3_1:+82123983 Msa0380480:CDS
TTCTAGAGATGCAACTGCAA+TGG 0.599491 3_1:-82127203 Msa0380470:intron
AAAGCTCAGAGTGGAAGAGA+TGG 0.599941 3_1:+82126448 Msa0380480:CDS
TCCCTCTCTTTGCCTAATCG+AGG 0.600136 3_1:-82127173 Msa0380470:intron
CTCTGAAGAAAATACCGAAG+TGG 0.600805 3_1:+82123830 Msa0380480:CDS
ACTCAGATCTCCAAAAGGAT+GGG 0.602523 3_1:-82128170 Msa0380470:intron
AAGGCTGGTGAGTCTGGCCA+AGG 0.604901 3_1:+82127847 Msa0380480:CDS
GAGGAAGATTGATTATGTGG+TGG 0.606655 3_1:-82123858 Msa0380470:intron
AGATTCACTCAATTGGGAGA+AGG 0.607074 3_1:+82126796 Msa0380480:CDS
CTTCCAATTCCACTTAGTAA+CGG 0.607417 3_1:+82123885 Msa0380480:CDS
ATCAGCCAGAAAGGAACTTG+AGG 0.607425 3_1:+82127048 Msa0380480:CDS
AATGAAGTGGACCCGTCCAG+TGG 0.610356 3_1:+82127544 Msa0380480:CDS
CCGAGCCCTCCTTATAATGG+AGG 0.611792 3_1:+82123473 Msa0380480:exon
AAACACATTCAAACAAGTCA+GGG 0.611913 3_1:+82128097 Msa0380480:CDS
GCCTCGATTAGGCAAAGAGA+GGG 0.612208 3_1:+82127172 Msa0380480:CDS
GAAAGTGTAACCCCACTGGA+CGG 0.613134 3_1:-82127556 Msa0380470:intron
GAACATCCTCCATTATAAGG+AGG 0.613704 3_1:-82123479 Msa0380470:intron
ACCTCCATTCGAATCTGTCA+AGG 0.613789 3_1:+82124310 Msa0380480:CDS
ATACAGAAAACAAGCAGAGA+CGG 0.617490 3_1:+82126298 Msa0380480:CDS
CAAGGCTGGAGTAAGTACCT+TGG 0.617948 3_1:+82127411 Msa0380480:CDS
AGTGCTTCAAATCACAAACA+TGG 0.620747 3_1:-82128464 Msa0380470:intron
AGCCAGAAAGGAACTTGAGG+AGG 0.622529 3_1:+82127051 Msa0380480:CDS
AAGTGGAATTGGAAGTTCTG+AGG 0.622609 3_1:-82123877 Msa0380470:intron
TGGTGAGTCTGGCCAAGGAG+TGG 0.623365 3_1:+82127852 Msa0380480:CDS
GCTTCCTTGACAGATTCGAA+TGG 0.625828 3_1:-82124314 Msa0380470:intron
AACTGGAAGTTGCTAAAGCT+AGG 0.628167 3_1:+82126513 Msa0380480:CDS
GCAAAGAACATCATAACCCG+TGG 0.628232 3_1:-82128066 Msa0380470:intron
TCTTCAGATATATTGAACCT+CGG 0.628243 3_1:+82128390 Msa0380480:three_prime_UTR
GAGATGATGGATCTAATCTG+AGG 0.628857 3_1:+82122087 None:intergenic
CAAGGAAGTAGAGAAGTCAG+TGG 0.629489 3_1:+82126664 Msa0380480:CDS
GTGTTGCCAAATGTTTCTGA+TGG 0.631392 3_1:+82123960 Msa0380480:CDS
TAATTAGGGATGAGATTAAG+CGG 0.631548 3_1:-82122265 Msa0380470:intron
GACAGATTCGAATGGAGGTG+TGG 0.633110 3_1:-82124306 Msa0380470:intron
GCTTAGCAAACGAGCTCACG+AGG 0.633240 3_1:+82127597 Msa0380480:CDS
ACAAAGAATAGGAACAGTCA+TGG 0.635786 3_1:+82126763 Msa0380480:CDS
GGTGATGATGAACTCTCGCA+AGG 0.637677 3_1:+82126971 Msa0380480:CDS
AGCTATTAAGAAAGCCGAGG+AGG 0.640981 3_1:+82126628 Msa0380480:CDS
CAGATCTCCAAAAGGATGGG+AGG 0.641222 3_1:-82128167 Msa0380470:intron
TAGAACAAGAACTTAGAAGG+TGG 0.641248 3_1:+82127800 Msa0380480:CDS
AGAGTGGAAGAGATGGAGCA+AGG 0.643532 3_1:+82126455 Msa0380480:CDS
AAAGCTGAGAAGGCAAAGGA+AGG 0.644947 3_1:+82127766 Msa0380480:CDS
GGAGAGCTGAAAATGAGCAA+CGG 0.649631 3_1:+82127821 Msa0380480:CDS
TGAAGCTATTAAGAAAGCCG+AGG 0.649803 3_1:+82126625 Msa0380480:CDS
TGCCTCGATTAGGCAAAGAG+AGG 0.651833 3_1:+82127171 Msa0380480:CDS
CAAATCAAGCAGCAAACCAG+AGG 0.652776 3_1:-82126903 Msa0380470:intron
TCATCACCGGAATCAAAACA+TGG 0.652989 3_1:+82128018 Msa0380480:CDS
GATTGTGGAAAAGTAAAAGG+AGG 0.654254 3_1:-82122178 Msa0380470:intron
GGCTCATCGAATCCAGACTG+TGG 0.664456 3_1:+82124370 Msa0380480:CDS
GGAACTTGCAAAGCTCAGAG+TGG 0.665822 3_1:+82126439 Msa0380480:CDS
CATAGAGAAAGCAAATGCTG+AGG 0.667742 3_1:+82127084 Msa0380480:CDS
TTCAGTTCCAAATGATACAG+TGG 0.670675 3_1:+82124028 Msa0380480:CDS
TCATCGAATCCAGACTGTGG+AGG 0.679040 3_1:+82124373 Msa0380480:CDS
CAAAGAACATCATAACCCGT+GGG 0.683684 3_1:-82128065 Msa0380470:intron
TAACCAGAATAAAAGCCCCA+GGG 0.691189 3_1:+82127876 Msa0380480:CDS
GATGATGAACTCTCGCAAGG+AGG 0.713634 3_1:+82126974 Msa0380480:CDS
TGAAGTGGACCCGTCCAGTG+GGG 0.735490 3_1:+82127546 Msa0380480:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTGATATAGTTATAAAATTT+TGG - chr3_1:82125775-82125794 Msa0380470:intron 10.0%
!! ATATTGATACTAATTATTAG+AGG - chr3_1:82122219-82122238 Msa0380470:intron 15.0%
!!! TATTGTTATAATACTTCTTT+TGG + chr3_1:82123408-82123427 Msa0380480:intron 15.0%
!! AAAAATACTAGTAAAAGAAA+AGG - chr3_1:82124908-82124927 Msa0380470:intron 15.0%
!! TATCTAAAAATGTACTAAAA+CGG + chr3_1:82125243-82125262 Msa0380480:intron 15.0%
!!! ATTAGTAGTAACTTATTTTT+GGG - chr3_1:82125651-82125670 Msa0380470:intron 15.0%
!!! AATTAGTAGTAACTTATTTT+TGG - chr3_1:82125652-82125671 Msa0380470:intron 15.0%
!!! ATAATTTTTAAAGCTGTTTT+CGG + chr3_1:82128638-82128657 Msa0380480:three_prime_UTR 15.0%
!! AAAGAAAAGAAAAGAAAAGA+AGG - chr3_1:82122154-82122173 Msa0380470:intron 20.0%
!! TCGATTTATTATGTATGTTA+TGG + chr3_1:82122562-82122581 Msa0380480:intron 20.0%
!!! CTAAAGTTGATAGATAATTT+GGG - chr3_1:82123031-82123050 Msa0380470:intron 20.0%
!! AGTTAGATGAAATTATTTCA+AGG - chr3_1:82123213-82123232 Msa0380470:intron 20.0%
!!! ATGTGAGTTTTAAATTTAAG+TGG - chr3_1:82123329-82123348 Msa0380470:intron 20.0%
!! TGAAAAGAAATAAGAGTAAT+AGG - chr3_1:82124488-82124507 Msa0380470:intron 20.0%
!!! ATTACTCTTATTTCTTTTCA+AGG + chr3_1:82124488-82124507 Msa0380480:intron 20.0%
!! GCTTATACAATATCTATTAA+AGG + chr3_1:82124547-82124566 Msa0380480:intron 20.0%
!! TACAATATCTATTAAAGGAT+AGG + chr3_1:82124552-82124571 Msa0380480:intron 20.0%
!! AGTATCAATTTGATTATAAG+TGG + chr3_1:82124625-82124644 Msa0380480:intron 20.0%
!! ATGTAGCATATAATCAAAAT+TGG + chr3_1:82124812-82124831 Msa0380480:intron 20.0%
!!! GTATTTTTCTATCAATTTTC+TGG + chr3_1:82124920-82124939 Msa0380480:intron 20.0%
!! ATCTAATATCACAAAATTAC+AGG - chr3_1:82124999-82125018 Msa0380470:intron 20.0%
!! TAGATAAAGAAAAATTTGAG+TGG - chr3_1:82125229-82125248 Msa0380470:intron 20.0%
!! ATCTAAAAATGTACTAAAAC+GGG + chr3_1:82125244-82125263 Msa0380480:intron 20.0%
!!! AATAAGTGCTTTTCTTTTAA+TGG - chr3_1:82125603-82125622 Msa0380470:intron 20.0%
!!! TTCGTATATGAAAAAAGTAT+TGG - chr3_1:82125724-82125743 Msa0380470:intron 20.0%
!! GATACTAATTGTAAAATACA+AGG + chr3_1:82125962-82125981 Msa0380480:intron 20.0%
!!! TTTTTTTCTTCTTTTCTTTC+TGG + chr3_1:82126214-82126233 Msa0380480:intron 20.0%
!! AGCTAAATTAACTGTTTATA+TGG + chr3_1:82126928-82126947 Msa0380480:CDS 20.0%
!! AATGCACATAATTTCAATTT+GGG - chr3_1:82128127-82128146 Msa0380470:intron 20.0%
!!! TAATTTTTAAAGCTGTTTTC+GGG + chr3_1:82128639-82128658 Msa0380480:three_prime_UTR 20.0%
! AATTAGAACACAGAAAAACA+CGG - chr3_1:82122125-82122144 Msa0380470:intron 25.0%
! ATGAAATTAAAGTGAGATTG+TGG - chr3_1:82122196-82122215 Msa0380470:intron 25.0%
! TAGTTATAGATTAGTGCTAT+AGG + chr3_1:82122440-82122459 Msa0380480:intron 25.0%
!! CTGGAAATTGCATTTTATTA+TGG + chr3_1:82122594-82122613 Msa0380480:intron 25.0%
!!! GATAGATAATTTGGGTTTTA+AGG - chr3_1:82123023-82123042 Msa0380470:intron 25.0%
!!! CCTAAAGTTGATAGATAATT+TGG - chr3_1:82123032-82123051 Msa0380470:intron 25.0%
! CCAAATTATCTATCAACTTT+AGG + chr3_1:82123029-82123048 Msa0380480:intron 25.0%
! AAATCAAAACTGAATGTGAA+CGG - chr3_1:82123078-82123097 Msa0380470:intron 25.0%
! TTAAATTGTATGTACCAGTT+AGG - chr3_1:82123271-82123290 Msa0380470:intron 25.0%
!!! TCAATTTGTCTCTTGTTTTT+GGG + chr3_1:82123294-82123313 Msa0380480:intron 25.0%
!!! GAGTTTTAAATTTAAGTGGA+TGG - chr3_1:82123325-82123344 Msa0380470:intron 25.0%
!! TCTCTTCAGAAATTTTTGAA+GGG - chr3_1:82123731-82123750 Msa0380470:intron 25.0%
! TCAAACTATAATACAAGATG+AGG + chr3_1:82123983-82124002 Msa0380480:CDS 25.0%
!!! AGAGAATTAGGTTGAATATT+GGG + chr3_1:82124511-82124530 Msa0380480:intron 25.0%
! ACGTGTCAAATTAATTATTC+TGG + chr3_1:82124850-82124869 Msa0380480:intron 25.0%
! TTTCATTACCTTGCTTAAAA+CGG - chr3_1:82125076-82125095 Msa0380470:intron 25.0%
! TCTAAAAATGTACTAAAACG+GGG + chr3_1:82125245-82125264 Msa0380480:intron 25.0%
! TGTTATTAGTCATATATCCT+AGG + chr3_1:82125505-82125524 Msa0380480:intron 25.0%
!!! TAACTTATTTTTGGGTATAG+TGG - chr3_1:82125643-82125662 Msa0380470:intron 25.0%
! ATTACCACTATTATATATCC+TGG + chr3_1:82125669-82125688 Msa0380480:intron 25.0%
! TTACCACTATTATATATCCT+GGG + chr3_1:82125670-82125689 Msa0380480:intron 25.0%
!! ATTTTGAACTGCAACAAATT+AGG + chr3_1:82126048-82126067 Msa0380480:intron 25.0%
!! TTTTGAACTGCAACAAATTA+GGG + chr3_1:82126049-82126068 Msa0380480:intron 25.0%
!!! TACATCTTTAAAATCAGAAC+TGG + chr3_1:82127129-82127148 Msa0380480:CDS 25.0%
! AAATAGAAGCAAAAATGAAG+TGG + chr3_1:82127531-82127550 Msa0380480:CDS 25.0%
!!! TTTTTTCCATGTTTTGATTC+CGG - chr3_1:82128027-82128046 Msa0380470:intron 25.0%
! CAATGCACATAATTTCAATT+TGG - chr3_1:82128128-82128147 Msa0380470:intron 25.0%
!! CAATCAATATAGTGAGTTTT+GGG - chr3_1:82128512-82128531 Msa0380470:intron 25.0%
!! TCAATCAATATAGTGAGTTT+TGG - chr3_1:82128513-82128532 Msa0380470:intron 25.0%
!! TCACTATATTGATTGATACT+AGG + chr3_1:82128517-82128536 Msa0380480:three_prime_UTR 25.0%
TGAGATTGTGGAAAAGTAAA+AGG - chr3_1:82122184-82122203 Msa0380470:intron 30.0%
TAATTAGGGATGAGATTAAG+CGG - chr3_1:82122268-82122287 Msa0380470:intron 30.0%
ACCTGATTAGGAAGTAATTA+GGG - chr3_1:82122282-82122301 Msa0380470:intron 30.0%
TTAGTGCTATAGGTTTAATC+TGG + chr3_1:82122450-82122469 Msa0380480:intron 30.0%
TATGTTATGGTCTTTGTTAC+TGG + chr3_1:82122575-82122594 Msa0380480:intron 30.0%
TTACTTGTAGTTGGAACTTA+AGG + chr3_1:82122842-82122861 Msa0380480:intron 30.0%
TACTTGTAGTTGGAACTTAA+GGG + chr3_1:82122843-82122862 Msa0380480:intron 30.0%
!!! AAGGTTTTAAATAGTCGTCA+CGG + chr3_1:82122902-82122921 Msa0380480:intron 30.0%
!! CATGATTTTGTTGTGATCAT+TGG + chr3_1:82122926-82122945 Msa0380480:intron 30.0%
ATTACTTGTGATCACAATTG+TGG + chr3_1:82122974-82122993 Msa0380480:intron 30.0%
ATCCCTACAAAAAAAAGTCT+TGG + chr3_1:82123121-82123140 Msa0380480:intron 30.0%
!!! GACCAAGACTTTTTTTTGTA+GGG - chr3_1:82123126-82123145 Msa0380470:intron 30.0%
!!! AGACCAAGACTTTTTTTTGT+AGG - chr3_1:82123127-82123146 Msa0380470:intron 30.0%
AAATTCAGACACTGAAAACT+TGG + chr3_1:82123154-82123173 Msa0380480:intron 30.0%
AATTCAGACACTGAAAACTT+GGG + chr3_1:82123155-82123174 Msa0380480:intron 30.0%
TTGGGAAACATCATTATTTC+AGG + chr3_1:82123173-82123192 Msa0380480:intron 30.0%
!! TCACAAACACTACTTTTCTT+TGG - chr3_1:82123237-82123256 Msa0380470:intron 30.0%
TGAAAAGAAAAACACCTAAC+TGG + chr3_1:82123254-82123273 Msa0380480:intron 30.0%
!!! CTCAATTTGTCTCTTGTTTT+TGG + chr3_1:82123293-82123312 Msa0380480:intron 30.0%
!! CTCTTCAGAAATTTTTGAAG+GGG - chr3_1:82123730-82123749 Msa0380470:intron 30.0%
! GTCTCTTCAGAAATTTTTGA+AGG - chr3_1:82123732-82123751 Msa0380470:intron 30.0%
AATCTTCAACCAAATTTAGC+TGG - chr3_1:82124073-82124092 Msa0380470:intron 30.0%
!! CAAATCTTTTGTTTCAGAAG+AGG - chr3_1:82124192-82124211 Msa0380470:intron 30.0%
AATGAAGTAAAGATGTCTTC+TGG + chr3_1:82124224-82124243 Msa0380480:CDS 30.0%
!! TTCTTTTCAAGGAGAGAATT+AGG + chr3_1:82124499-82124518 Msa0380480:intron 30.0%
!! GAGAGAATTAGGTTGAATAT+TGG + chr3_1:82124510-82124529 Msa0380480:intron 30.0%
!! GAGAATTAGGTTGAATATTG+GGG + chr3_1:82124512-82124531 Msa0380480:intron 30.0%
TTAGGCCTATAATATGACTT+TGG - chr3_1:82124722-82124741 Msa0380470:intron 30.0%
! CATGCAAGTAATGTGTTATT+AGG - chr3_1:82124740-82124759 Msa0380470:intron 30.0%
TGTGCTACATCATATTAACT+AGG + chr3_1:82125032-82125051 Msa0380480:intron 30.0%
TTAAGCAAGGTAATGAAAAC+CGG + chr3_1:82125078-82125097 Msa0380480:intron 30.0%
TTCTTTAACAAGAGAAAGAG+CGG + chr3_1:82125327-82125346 Msa0380480:intron 30.0%
GGTATTAACAAAAAGACACT+TGG + chr3_1:82125406-82125425 Msa0380480:intron 30.0%
ATAATCTTAAGTGTCCTTCT+AGG - chr3_1:82125576-82125595 Msa0380470:intron 30.0%
TATTATATATCCTGGGAAGT+TGG + chr3_1:82125677-82125696 Msa0380480:intron 30.0%
AAAACCAAGGTAATCAAAAC+TGG - chr3_1:82125912-82125931 Msa0380470:intron 30.0%
ACGTTTAACACTTAAAACCA+AGG - chr3_1:82125925-82125944 Msa0380470:intron 30.0%
ACAAGGAAACTATGATTGTA+TGG + chr3_1:82125979-82125998 Msa0380480:intron 30.0%
AAACCATAAACAGTTTCCTT+GGG - chr3_1:82126010-82126029 Msa0380470:intron 30.0%
AAAACCATAAACAGTTTCCT+TGG - chr3_1:82126011-82126030 Msa0380470:intron 30.0%
!! GAACGTTTTATTACATCAGT+AGG - chr3_1:82126110-82126129 Msa0380470:intron 30.0%
! TTTTCTTTCTGGATATACAG+AGG + chr3_1:82126225-82126244 Msa0380480:intron 30.0%
GACGAAAAATCAAGTACTAA+AGG + chr3_1:82126328-82126347 Msa0380480:CDS 30.0%
TAACTCTTCTATAAGTCTCT+TGG - chr3_1:82126366-82126385 Msa0380470:intron 30.0%
AGATCAAGATTCACTCAATT+GGG + chr3_1:82126790-82126809 Msa0380480:CDS 30.0%
AAAGGATCTCAAATCTAAAC+TGG + chr3_1:82126874-82126893 Msa0380480:CDS 30.0%
GAATCAAAGTTAAAGCAAGA+AGG + chr3_1:82126950-82126969 Msa0380480:CDS 30.0%
!! AATAGCTTTGGTTCAAATGA+AGG + chr3_1:82127252-82127271 Msa0380480:CDS 30.0%
!! AGGAAGCAAATAATTTTGAC+CGG + chr3_1:82127917-82127936 Msa0380480:CDS 30.0%
AAAACACATTCAAACAAGTC+AGG + chr3_1:82128096-82128115 Msa0380480:CDS 30.0%
AAACACATTCAAACAAGTCA+GGG + chr3_1:82128097-82128116 Msa0380480:CDS 30.0%
ATTGGATTATACTCACTTGA+TGG + chr3_1:82128266-82128285 Msa0380480:three_prime_UTR 30.0%
TTGTGAGGACTTAAGAAAAT+AGG + chr3_1:82128316-82128335 Msa0380480:three_prime_UTR 30.0%
AAAATAGGTTCGTCTATGTT+GGG + chr3_1:82128331-82128350 Msa0380480:three_prime_UTR 30.0%
TCTTCAGATATATTGAACCT+CGG + chr3_1:82128390-82128409 Msa0380480:three_prime_UTR 30.0%
! ACTAGGAAGAATTTTCTCAA+TGG + chr3_1:82128534-82128553 Msa0380480:three_prime_UTR 30.0%
! CTAGGAAGAATTTTCTCAAT+GGG + chr3_1:82128535-82128554 Msa0380480:three_prime_UTR 30.0%
TGCATGGAATATACACATAA+AGG + chr3_1:82128593-82128612 Msa0380480:three_prime_UTR 30.0%
GATTGTGGAAAAGTAAAAGG+AGG - chr3_1:82122181-82122200 Msa0380470:intron 35.0%
TCCCTAATTACTTCCTAATC+AGG + chr3_1:82122278-82122297 Msa0380480:five_prime_UTR 35.0%
CACCTGATTAGGAAGTAATT+AGG - chr3_1:82122283-82122302 Msa0380470:intron 35.0%
AATACACGAGTGAAAGGAAA+CGG - chr3_1:82122377-82122396 Msa0380470:intron 35.0%
! GTGTATTTTCCGAACATCAA+CGG + chr3_1:82122390-82122409 Msa0380480:five_prime_UTR 35.0%
!! AAGGTGTTTTGTCTACGAAA+AGG + chr3_1:82122416-82122435 Msa0380480:five_prime_UTR 35.0%
TGCAGTTACTTACTTGTAGT+TGG + chr3_1:82122833-82122852 Msa0380480:intron 35.0%
ACTTGTAGTTGGAACTTAAG+GGG + chr3_1:82122844-82122863 Msa0380480:intron 35.0%
AACTGAATGTGAACGGTTAA+TGG - chr3_1:82123071-82123090 Msa0380470:intron 35.0%
! TTTTCAGTGTCTGAATTTGC+AGG - chr3_1:82123152-82123171 Msa0380470:intron 35.0%
AACATCCTCCATTATAAGGA+GGG - chr3_1:82123481-82123500 Msa0380470:intron 35.0%
CTTGAACATCCTCCATTATA+AGG - chr3_1:82123485-82123504 Msa0380470:intron 35.0%
! ATTTTTGTAGAGGAGTCAGA+GGG - chr3_1:82123516-82123535 Msa0380470:intron 35.0%
! AATTTTTGTAGAGGAGTCAG+AGG - chr3_1:82123517-82123536 Msa0380470:intron 35.0%
! CTCTTCAGCAATTTTTGTAG+AGG - chr3_1:82123526-82123545 Msa0380470:intron 35.0%
TCTTCAATATGTTCTGCTAG+TGG - chr3_1:82123552-82123571 Msa0380470:intron 35.0%
!! ACTTTTGAAGAGGATTCAGA+GGG - chr3_1:82123582-82123601 Msa0380470:intron 35.0%
!! AACTTTTGAAGAGGATTCAG+AGG - chr3_1:82123583-82123602 Msa0380470:intron 35.0%
!! CTCTTCAGTAACTTTTGAAG+AGG - chr3_1:82123592-82123611 Msa0380470:intron 35.0%
!! CTCTTCAGTAACTTTTGAAG+AGG - chr3_1:82123592-82123611 Msa0380470:intron 35.0%
AGTTACTGAAGAGACACATA+TGG + chr3_1:82123671-82123690 Msa0380480:CDS 35.0%
!! ATTTTTGAAGGGGATTCAGA+TGG - chr3_1:82123720-82123739 Msa0380470:intron 35.0%
AGGAAGATTGATTATGTGGT+GGG - chr3_1:82123860-82123879 Msa0380470:intron 35.0%
TCTGAGGAAGATTGATTATG+TGG - chr3_1:82123864-82123883 Msa0380470:intron 35.0%
CTTCCAATTCCACTTAGTAA+CGG + chr3_1:82123885-82123904 Msa0380480:CDS 35.0%
TTGGCAACACTGATAATTCA+GGG - chr3_1:82123950-82123969 Msa0380470:intron 35.0%
TTTGGCAACACTGATAATTC+AGG - chr3_1:82123951-82123970 Msa0380470:intron 35.0%
GTTTGACCATCAGAAACATT+TGG - chr3_1:82123969-82123988 Msa0380470:intron 35.0%
TTCAGTTCCAAATGATACAG+TGG + chr3_1:82124028-82124047 Msa0380480:CDS 35.0%
TTGGTTGAAGATTCTAAACC+AGG + chr3_1:82124080-82124099 Msa0380480:CDS 35.0%
! TCTTTTTACATCAACCTGCT+TGG - chr3_1:82124273-82124292 Msa0380470:intron 35.0%
!! AAGCAGGTTGATGTAAAAAG+AGG + chr3_1:82124272-82124291 Msa0380480:CDS 35.0%
!! AAGGAAGCTGTTTCTAAGTT+TGG + chr3_1:82124329-82124348 Msa0380480:CDS 35.0%
! TTATGCAAGAAGTGTGAAGA+AGG - chr3_1:82124455-82124474 Msa0380470:intron 35.0%
TCTATTAAAGGATAGGCAAG+AGG + chr3_1:82124559-82124578 Msa0380480:intron 35.0%
CAAGAGGCAAATGTTGTTAT+GGG + chr3_1:82124575-82124594 Msa0380480:intron 35.0%
AAGAGGCAAATGTTGTTATG+GGG + chr3_1:82124576-82124595 Msa0380480:intron 35.0%
GCCAACCAAAGTCATATTAT+AGG + chr3_1:82124714-82124733 Msa0380480:intron 35.0%
GCCTATAATATGACTTTGGT+TGG - chr3_1:82124718-82124737 Msa0380470:intron 35.0%
AAACCACTCTGTTGTTAAAC+CGG + chr3_1:82125146-82125165 Msa0380480:intron 35.0%
! GTTCTGCGTTTTCTTCTTAA+AGG + chr3_1:82125290-82125309 Msa0380480:intron 35.0%
TCTTTAACAAGAGAAAGAGC+GGG + chr3_1:82125328-82125347 Msa0380480:intron 35.0%
CTTCCCAGGATATATAATAG+TGG - chr3_1:82125676-82125695 Msa0380470:intron 35.0%
AGAGAAGACATGTGAGAAAA+CGG + chr3_1:82125816-82125835 Msa0380480:intron 35.0%
! TGATTGTATGGTTTTTCCCA+AGG + chr3_1:82125991-82126010 Msa0380480:intron 35.0%
TTTCCCAAGGAAACTGTTTA+TGG + chr3_1:82126004-82126023 Msa0380480:intron 35.0%
TCAAAATGCATTGTAAGGCA+AGG - chr3_1:82126035-82126054 Msa0380470:intron 35.0%
GCAGTTCAAAATGCATTGTA+AGG - chr3_1:82126040-82126059 Msa0380470:intron 35.0%
! TACCTTGCTTGATTTTCTGT+TGG + chr3_1:82126172-82126191 Msa0380480:intron 35.0%
!! TCTGCTTGTTTTCTGTATTC+TGG - chr3_1:82126296-82126315 Msa0380470:intron 35.0%
ATACAGAAAACAAGCAGAGA+CGG + chr3_1:82126298-82126317 Msa0380480:CDS 35.0%
AAATCAAGTACTAAAGGAGC+TGG + chr3_1:82126334-82126353 Msa0380480:CDS 35.0%
AGTTGCTAAAGCTAGGTATA+CGG + chr3_1:82126520-82126539 Msa0380480:CDS 35.0%
TTCATCTCTATCAGTCACTA+AGG - chr3_1:82126609-82126628 Msa0380470:intron 35.0%
! AGTCTCTAATGACTCTTTTG+TGG - chr3_1:82126714-82126733 Msa0380470:intron 35.0%
ACAAAGAATAGGAACAGTCA+TGG + chr3_1:82126763-82126782 Msa0380480:CDS 35.0%
GAGATCAAGATTCACTCAAT+TGG + chr3_1:82126789-82126808 Msa0380480:CDS 35.0%
!! ACATTTGCTCATTGATTCTC+TGG - chr3_1:82126847-82126866 Msa0380470:intron 35.0%
!!! TCTTCTTTTCTGGTTCTTCT+TGG - chr3_1:82127000-82127019 Msa0380470:intron 35.0%
GACTAGATCAGAAATAGCTT+TGG + chr3_1:82127240-82127259 Msa0380480:CDS 35.0%
AAGTTCGGTCATTTGTTCTT+TGG - chr3_1:82127287-82127306 Msa0380470:intron 35.0%
TGAAGAACTGCAGAAAGTAA+AGG + chr3_1:82127372-82127391 Msa0380480:CDS 35.0%
! TTTTTCCATTGCCATCTTCA+AGG - chr3_1:82127749-82127768 Msa0380470:intron 35.0%
AAGGCAAAGGAAGGTAAATT+AGG + chr3_1:82127775-82127794 Msa0380480:CDS 35.0%
GTGTAGAACAAGAACTTAGA+AGG + chr3_1:82127797-82127816 Msa0380480:CDS 35.0%
TAGAACAAGAACTTAGAAGG+TGG + chr3_1:82127800-82127819 Msa0380480:CDS 35.0%
TCTGCATGCATATAAGTCTT+CGG - chr3_1:82127982-82128001 Msa0380470:intron 35.0%
ATGCATGCAGAAAAAGATGA+AGG + chr3_1:82127991-82128010 Msa0380480:CDS 35.0%
! TCGATTTGTGTATGGTTTGA+CGG + chr3_1:82128243-82128262 Msa0380480:three_prime_UTR 35.0%
GATTATACTCACTTGATGGA+TGG + chr3_1:82128270-82128289 Msa0380480:three_prime_UTR 35.0%
GAAAATAGGTTCGTCTATGT+TGG + chr3_1:82128330-82128349 Msa0380480:three_prime_UTR 35.0%
AGTGCTTCAAATCACAAACA+TGG - chr3_1:82128467-82128486 Msa0380470:intron 35.0%
! GTGATTTGAAGCACTTTGAA+TGG + chr3_1:82128472-82128491 Msa0380480:three_prime_UTR 35.0%
ACAACTAGTGAACTGTGAAT+GGG - chr3_1:82128562-82128581 Msa0380470:intron 35.0%
TGTATATTCCATGCATCAGA+AGG - chr3_1:82128588-82128607 Msa0380470:intron 35.0%
!!! TTTTAAAGCTGTTTTCGGGA+AGG + chr3_1:82128643-82128662 Msa0380480:three_prime_UTR 35.0%
ATCATCAAATGATCCAGAAC+AGG - chr3_1:82128671-82128690 Msa0380470:intron 35.0%
AACACAGAAAAACACGGAAG+TGG - chr3_1:82122119-82122138 Msa0380470:intron 40.0%
TGTGGAAAAGTAAAAGGAGG+TGG - chr3_1:82122178-82122197 Msa0380470:intron 40.0%
ACTTCGCAAAACACCTGATT+AGG - chr3_1:82122294-82122313 Msa0380470:intron 40.0%
TCGGAAAATACACGAGTGAA+AGG - chr3_1:82122383-82122402 Msa0380470:intron 40.0%
GAGATCTCTGCATTTGTCAA+AGG + chr3_1:82122883-82122902 Msa0380480:intron 40.0%
ATTTCAAGGTGTAAGCTCGA+TGG - chr3_1:82123199-82123218 Msa0380470:intron 40.0%
GAACATCCTCCATTATAAGG+AGG - chr3_1:82123482-82123501 Msa0380470:intron 40.0%
TCTTCAACATGTTCTGCTAG+TGG - chr3_1:82123618-82123637 Msa0380470:intron 40.0%
GAAGAGGATTCAGAATCAGA+GGG - chr3_1:82123648-82123667 Msa0380470:intron 40.0%
TGAAGAGGATTCAGAATCAG+AGG - chr3_1:82123649-82123668 Msa0380470:intron 40.0%
AGTTACTGAGACACAACTGA+TGG + chr3_1:82123803-82123822 Msa0380480:CDS 40.0%
! CACTTCGGTATTTTCTTCAG+AGG - chr3_1:82123832-82123851 Msa0380470:intron 40.0%
! CTCTGAAGAAAATACCGAAG+TGG + chr3_1:82123830-82123849 Msa0380480:CDS 40.0%
GAGGAAGATTGATTATGTGG+TGG - chr3_1:82123861-82123880 Msa0380470:intron 40.0%
AAGTGGAATTGGAAGTTCTG+AGG - chr3_1:82123880-82123899 Msa0380470:intron 40.0%
TCTCCGTTACTAAGTGGAAT+TGG - chr3_1:82123891-82123910 Msa0380470:intron 40.0%
! GTGTTGCCAAATGTTTCTGA+TGG + chr3_1:82123960-82123979 Msa0380480:CDS 40.0%
GTCACATCCACTGTATCATT+TGG - chr3_1:82124038-82124057 Msa0380470:intron 40.0%
AACAAGCGACCAGCTAAATT+TGG + chr3_1:82124061-82124080 Msa0380480:CDS 40.0%
TACATCAACCTGCTTGGTTT+GGG - chr3_1:82124267-82124286 Msa0380470:intron 40.0%
TTACATCAACCTGCTTGGTT+TGG - chr3_1:82124268-82124287 Msa0380470:intron 40.0%
!! GAAGCTGTTTCTAAGTTTGG+AGG + chr3_1:82124332-82124351 Msa0380480:CDS 40.0%
AGTTTGGAGGAATTGTCGAT+TGG + chr3_1:82124345-82124364 Msa0380480:CDS 40.0%
ACATATATACCTCCACAGTC+TGG - chr3_1:82124385-82124404 Msa0380470:intron 40.0%
GCAAGAGGCAAATGTTGTTA+TGG + chr3_1:82124574-82124593 Msa0380480:intron 40.0%
!! GCTATGATCCGTTTTAAGCA+AGG + chr3_1:82125065-82125084 Msa0380480:intron 40.0%
CAAGGTAATGAAAACCGGAT+CGG + chr3_1:82125083-82125102 Msa0380480:intron 40.0%
AACCACTCTGTTGTTAAACC+GGG + chr3_1:82125147-82125166 Msa0380480:intron 40.0%
AATTTGAGTGGTCCAACCTA+TGG - chr3_1:82125217-82125236 Msa0380470:intron 40.0%
CTTTAACAAGAGAAAGAGCG+GGG + chr3_1:82125329-82125348 Msa0380480:intron 40.0%
! TGAAAGCATACACTGGAGAA+GGG + chr3_1:82125360-82125379 Msa0380480:intron 40.0%
TTGGAGAATAAGATGTGCAC+AGG + chr3_1:82125425-82125444 Msa0380480:intron 40.0%
TACTACTAGTCGAACTTCCT+AGG - chr3_1:82125525-82125544 Msa0380470:intron 40.0%
AATTAGTCATGAGACCCTAG+TGG + chr3_1:82125544-82125563 Msa0380480:intron 40.0%
AAATCATAGTCCAACTTCCC+AGG - chr3_1:82125690-82125709 Msa0380470:intron 40.0%
! GGGAAGTTGGACTATGATTT+TGG + chr3_1:82125690-82125709 Msa0380480:intron 40.0%
CAAGGTAATCAAAACTGGAC+CGG - chr3_1:82125907-82125926 Msa0380470:intron 40.0%
CTCCAACAGAAAATCAAGCA+AGG - chr3_1:82126177-82126196 Msa0380470:intron 40.0%
AACTGGAAGTTGCTAAAGCT+AGG + chr3_1:82126513-82126532 Msa0380480:CDS 40.0%
TGAAGCTATTAAGAAAGCCG+AGG + chr3_1:82126625-82126644 Msa0380480:CDS 40.0%
GAAGCAGAGGAACAAAGAAT+AGG + chr3_1:82126752-82126771 Msa0380480:CDS 40.0%
AGATTCACTCAATTGGGAGA+AGG + chr3_1:82126796-82126815 Msa0380480:CDS 40.0%
TTGGGAGAAGGAACTTAAAC+AGG + chr3_1:82126808-82126827 Msa0380480:CDS 40.0%
TGAGCAAATGTTGTCTGCAA+AGG + chr3_1:82126856-82126875 Msa0380480:CDS 40.0%
! TCTGTGTGTGTCTTCTTTTC+TGG - chr3_1:82127010-82127029 Msa0380470:intron 40.0%
CATAGAGAAAGCAAATGCTG+AGG + chr3_1:82127084-82127103 Msa0380480:CDS 40.0%
AATCATCTCTTGCCTCGATT+AGG + chr3_1:82127161-82127180 Msa0380480:CDS 40.0%
! TTCTAGAGATGCAACTGCAA+TGG - chr3_1:82127206-82127225 Msa0380470:intron 40.0%
! TGCATCTCTAGAAGCTGAAT+TGG + chr3_1:82127213-82127232 Msa0380480:CDS 40.0%
! TTGCAGCTTCTTTGGAAGTT+CGG - chr3_1:82127302-82127321 Msa0380470:intron 40.0%
! TGCAAAGGCTTCTGAAAAGT+TGG + chr3_1:82127471-82127490 Msa0380480:CDS 40.0%
!! AGCTGCTAATTCTGAAGTTG+AGG + chr3_1:82127648-82127667 Msa0380480:CDS 40.0%
!! TTCTGAAGTTGAGGTAGCTA+AGG + chr3_1:82127657-82127676 Msa0380480:CDS 40.0%
ACTGAAATCCTTCGAGAAGT+TGG + chr3_1:82127687-82127706 Msa0380480:CDS 40.0%
ATAGAGAGATAGCTGCTAGA+AGG + chr3_1:82127719-82127738 Msa0380480:CDS 40.0%
TAGAGAGATAGCTGCTAGAA+GGG + chr3_1:82127720-82127739 Msa0380480:CDS 40.0%
TAGAAGGGAATCCTTGAAGA+TGG + chr3_1:82127735-82127754 Msa0380480:CDS 40.0%
TGAAAATGAGCAACGGAGAA+AGG + chr3_1:82127828-82127847 Msa0380480:CDS 40.0%
! TATTCTGGTTAACCACTCCT+TGG - chr3_1:82127867-82127886 Msa0380470:intron 40.0%
TTAACCAGAATAAAAGCCCC+AGG + chr3_1:82127875-82127894 Msa0380480:CDS 40.0%
TAACCAGAATAAAAGCCCCA+GGG + chr3_1:82127876-82127895 Msa0380480:CDS 40.0%
!! TGCAGGATTAGTTGCATACT+GGG - chr3_1:82127944-82127963 Msa0380470:intron 40.0%
GGACTTGACAAATATTGTGC+AGG - chr3_1:82127961-82127980 Msa0380470:intron 40.0%
CATGCAGAAAAAGATGAAGG+TGG + chr3_1:82127994-82128013 Msa0380480:CDS 40.0%
TCATCACCGGAATCAAAACA+TGG + chr3_1:82128018-82128037 Msa0380480:CDS 40.0%
AGAAGAAATCGTTGTTCCCA+CGG + chr3_1:82128049-82128068 Msa0380480:CDS 40.0%
CAAAGAACATCATAACCCGT+GGG - chr3_1:82128068-82128087 Msa0380470:intron 40.0%
ACTCAGATCTCCAAAAGGAT+GGG - chr3_1:82128173-82128192 Msa0380470:intron 40.0%
ATCTGAGTGACTCGAAATGT+TGG + chr3_1:82128185-82128204 Msa0380480:three_prime_UTR 40.0%
! TTGTGTATGGTTTGACGGAT+TGG + chr3_1:82128248-82128267 Msa0380480:three_prime_UTR 40.0%
! CTCACTTGATGGATGGTATA+CGG + chr3_1:82128277-82128296 Msa0380480:three_prime_UTR 40.0%
ACAAATCTTTACACAAGCCG+AGG - chr3_1:82128410-82128429 Msa0380470:intron 40.0%
CACAACTAGTGAACTGTGAA+TGG - chr3_1:82128563-82128582 Msa0380470:intron 40.0%
CATTCACAGTTCACTAGTTG+TGG + chr3_1:82128561-82128580 Msa0380480:three_prime_UTR 40.0%
TTCCGAACATCAACGGTTGA+AGG + chr3_1:82122397-82122416 Msa0380480:five_prime_UTR 45.0%
CACCTTCAACCGTTGATGTT+CGG - chr3_1:82122402-82122421 Msa0380470:intron 45.0%
AGCACAATACTTATCCGCAC+CGG + chr3_1:82122639-82122658 Msa0380480:intron 45.0%
TCACAATTGTGGTTGCGATG+TGG + chr3_1:82122985-82123004 Msa0380480:intron 45.0%
! AATTTCTGAAGAGACGCCAC+TGG + chr3_1:82123737-82123756 Msa0380480:CDS 45.0%
TCTTCAACATGTTCTGCCAG+TGG - chr3_1:82123756-82123775 Msa0380470:intron 45.0%
!! ATGTGGTGGGTTTACCACTT+CGG - chr3_1:82123847-82123866 Msa0380470:intron 45.0%
! TCCACTTAGTAACGGAGAAG+TGG + chr3_1:82123893-82123912 Msa0380480:CDS 45.0%
TCCACTTCTCCGTTACTAAG+TGG - chr3_1:82123897-82123916 Msa0380470:intron 45.0%
TGCTGGTCAGAGATATCTTC+TGG - chr3_1:82124110-82124129 Msa0380470:intron 45.0%
CATCAACCTGCAATTCATGC+TGG - chr3_1:82124127-82124146 Msa0380470:intron 45.0%
ACCTCCATTCGAATCTGTCA+AGG + chr3_1:82124310-82124329 Msa0380480:CDS 45.0%
TCCTTGACAGATTCGAATGG+AGG - chr3_1:82124314-82124333 Msa0380470:intron 45.0%
GCTTCCTTGACAGATTCGAA+TGG - chr3_1:82124317-82124336 Msa0380470:intron 45.0%
! TGGAGGAATTGTCGATTGGA+AGG + chr3_1:82124349-82124368 Msa0380480:CDS 45.0%
AAACAGACCAGACATAGGTC+CGG - chr3_1:82125118-82125137 Msa0380470:intron 45.0%
GTACCAAACAGACCAGACAT+AGG - chr3_1:82125123-82125142 Msa0380470:intron 45.0%
!! CCACTTTTGCACGGTTTTAG+CGG - chr3_1:82125180-82125199 Msa0380470:intron 45.0%
CTAAAACCGTGCAAAAGTGG+CGG + chr3_1:82125180-82125199 Msa0380480:intron 45.0%
! GGATGAGTGAAAGCATACAC+TGG + chr3_1:82125353-82125372 Msa0380480:intron 45.0%
! GTGAAAGCATACACTGGAGA+AGG + chr3_1:82125359-82125378 Msa0380480:intron 45.0%
! CTTCTAGGTTCTAGCCACTA+GGG - chr3_1:82125561-82125580 Msa0380470:intron 45.0%
CAAGGTTCAAAGGTTGGACA+GGG - chr3_1:82125858-82125877 Msa0380470:intron 45.0%
TCAAGGTTCAAAGGTTGGAC+AGG - chr3_1:82125859-82125878 Msa0380470:intron 45.0%
ACATTGAACCAGTGTAGGCA+CGG - chr3_1:82125884-82125903 Msa0380470:intron 45.0%
!!! CGGTCCAGTTTTGATTACCT+TGG + chr3_1:82125905-82125924 Msa0380480:intron 45.0%
! TTTTGCTTCCTGCTGTACTG+AGG + chr3_1:82126131-82126150 Msa0380480:intron 45.0%
CAATTGATCCTCAGTACAGC+AGG - chr3_1:82126142-82126161 Msa0380470:intron 45.0%
CTTCAGTTTGTGCTCTCTCT+AGG - chr3_1:82126397-82126416 Msa0380470:intron 45.0%
AGCACAAACTGAAGAGCAAC+AGG + chr3_1:82126403-82126422 Msa0380480:CDS 45.0%
AAAGCTCAGAGTGGAAGAGA+TGG + chr3_1:82126448-82126467 Msa0380480:CDS 45.0%
AGCTATTAAGAAAGCCGAGG+AGG + chr3_1:82126628-82126647 Msa0380480:CDS 45.0%
!! CACTGACTTCTCTACTTCCT+TGG - chr3_1:82126666-82126685 Msa0380470:intron 45.0%
CAAGGAAGTAGAGAAGTCAG+TGG + chr3_1:82126664-82126683 Msa0380480:CDS 45.0%
CAAATCAAGCAGCAAACCAG+AGG - chr3_1:82126906-82126925 Msa0380470:intron 45.0%
!! TTCCTTTCTGGCTGATTCCA+CGG - chr3_1:82127044-82127063 Msa0380470:intron 45.0%
ATCAGCCAGAAAGGAACTTG+AGG + chr3_1:82127048-82127067 Msa0380480:CDS 45.0%
TACCTCCTCAAGTTCCTTTC+TGG - chr3_1:82127056-82127075 Msa0380470:intron 45.0%
GATTAGGCAAAGAGAGGGAA+TGG + chr3_1:82127177-82127196 Msa0380480:CDS 45.0%
TAGAGATGCAACTGCAATGG+AGG - chr3_1:82127203-82127222 Msa0380470:intron 45.0%
GCTGTTAGTTGCAGCTTCTT+TGG - chr3_1:82127310-82127329 Msa0380470:intron 45.0%
AACAGCTGAAGAGGCTAATC+AGG + chr3_1:82127324-82127343 Msa0380480:CDS 45.0%
GAGTAAGTACCTTGGAAAGC+AGG + chr3_1:82127419-82127438 Msa0380480:CDS 45.0%
TGCAAGTAACCTGCTTTCCA+AGG - chr3_1:82127431-82127450 Msa0380470:intron 45.0%
CAGGTTACTTGCAGCTCAAA+AGG + chr3_1:82127438-82127457 Msa0380480:CDS 45.0%
TGCAGCTCAAAAGGAGATAG+AGG + chr3_1:82127447-82127466 Msa0380480:CDS 45.0%
AAAGGAGATAGAGGCTGCAA+AGG + chr3_1:82127456-82127475 Msa0380480:CDS 45.0%
! CAAAGAAAGTGTAACCCCAC+TGG - chr3_1:82127563-82127582 Msa0380470:intron 45.0%
CAGTGGGGTTACACTTTCTT+TGG + chr3_1:82127561-82127580 Msa0380480:CDS 45.0%
AGCAGCTGCAATCCTTGTAT+TGG - chr3_1:82127635-82127654 Msa0380470:intron 45.0%
CACTTCATCCAACTTCTCGA+AGG - chr3_1:82127698-82127717 Msa0380470:intron 45.0%
GGAATCCTTGAAGATGGCAA+TGG + chr3_1:82127741-82127760 Msa0380480:CDS 45.0%
GGCAATGGAAAAAGCTGAGA+AGG + chr3_1:82127756-82127775 Msa0380480:CDS 45.0%
GGAAAAAGCTGAGAAGGCAA+AGG + chr3_1:82127762-82127781 Msa0380480:CDS 45.0%
AAAGCTGAGAAGGCAAAGGA+AGG + chr3_1:82127766-82127785 Msa0380480:CDS 45.0%
GGAGAGCTGAAAATGAGCAA+CGG + chr3_1:82127821-82127840 Msa0380480:CDS 45.0%
! GATTAGTTGCATACTGGGAC+CGG - chr3_1:82127939-82127958 Msa0380470:intron 45.0%
!! GTGCAGGATTAGTTGCATAC+TGG - chr3_1:82127945-82127964 Msa0380470:intron 45.0%
AGATGAAGGTGGATCATCAC+CGG + chr3_1:82128005-82128024 Msa0380480:CDS 45.0%
GAAGAAATCGTTGTTCCCAC+GGG + chr3_1:82128050-82128069 Msa0380480:CDS 45.0%
GCAAAGAACATCATAACCCG+TGG - chr3_1:82128069-82128088 Msa0380470:intron 45.0%
! TATCTTGCCTCCCATCCTTT+TGG + chr3_1:82128160-82128179 Msa0380480:three_prime_UTR 45.0%
CACTCAGATCTCCAAAAGGA+TGG - chr3_1:82128174-82128193 Msa0380470:intron 45.0%
GAGTCACTCAGATCTCCAAA+AGG - chr3_1:82128178-82128197 Msa0380470:intron 45.0%
! TACTGGCACAGTACAGCTTT+TGG - chr3_1:82128215-82128234 Msa0380470:intron 45.0%
ACAAATCGATCACCGTGTAC+TGG - chr3_1:82128232-82128251 Msa0380470:intron 45.0%
!! CACGGTGATCGATTTGTGTA+TGG + chr3_1:82128235-82128254 Msa0380480:three_prime_UTR 45.0%
! TTCCTGCTCAGTGTTTTGTG+AGG + chr3_1:82128301-82128320 Msa0380480:three_prime_UTR 45.0%
! CACATGTGTGAGTATCGTGC+CGG - chr3_1:82122667-82122686 Msa0380470:intron 50.0%
CTCCATTATAAGGAGGGCTC+GGG - chr3_1:82123475-82123494 Msa0380470:intron 50.0%
CCTCCATTATAAGGAGGGCT+CGG - chr3_1:82123476-82123495 Msa0380470:intron 50.0%
! AGTAACGGAGAAGTGGAGTC+TGG + chr3_1:82123900-82123919 Msa0380480:CDS 50.0%
!! GAGATATCTTCTGGAGCACC+TGG - chr3_1:82124101-82124120 Msa0380470:intron 50.0%
CTCTGACCAGCATGAATTGC+AGG + chr3_1:82124118-82124137 Msa0380480:CDS 50.0%
!! ATCAACCTGCTTGGTTTGGG+CGG - chr3_1:82124264-82124283 Msa0380470:intron 50.0%
GACAGATTCGAATGGAGGTG+TGG - chr3_1:82124309-82124328 Msa0380470:intron 50.0%
TCATCGAATCCAGACTGTGG+AGG + chr3_1:82124373-82124392 Msa0380480:CDS 50.0%
GTAATGAAAACCGGATCGGC+CGG + chr3_1:82125087-82125106 Msa0380480:intron 50.0%
AGACATAGGTCCGGTTCAAC+CGG - chr3_1:82125109-82125128 Msa0380470:intron 50.0%
GGACCTATGTCTGGTCTGTT+TGG + chr3_1:82125117-82125136 Msa0380480:intron 50.0%
TGCCCGGTTTAACAACAGAG+TGG - chr3_1:82125152-82125171 Msa0380470:intron 50.0%
!! GGTTTTAGCGGTTTACTGCC+CGG - chr3_1:82125168-82125187 Msa0380470:intron 50.0%
CCGCTAAAACCGTGCAAAAG+TGG + chr3_1:82125177-82125196 Msa0380480:intron 50.0%
AGTGGTCCAACCTATGGATC+CGG - chr3_1:82125211-82125230 Msa0380470:intron 50.0%
!!! AACGGGGCTTTTGAAGCTTC+CGG + chr3_1:82125261-82125280 Msa0380480:intron 50.0%
GAAAACGCAGAACAAGCTGC+CGG - chr3_1:82125283-82125302 Msa0380470:intron 50.0%
TAACAAGAGAAAGAGCGGGG+AGG + chr3_1:82125332-82125351 Msa0380480:intron 50.0%
ACTGGAGAAGGGAGAAGAAG+AGG + chr3_1:82125371-82125390 Msa0380480:intron 50.0%
GAGAAGGGAGAAGAAGAGGA+GGG + chr3_1:82125375-82125394 Msa0380480:intron 50.0%
AAGAAGAGGAGGGTAGACGT+GGG + chr3_1:82125385-82125404 Msa0380480:intron 50.0%
! CCTTCTAGGTTCTAGCCACT+AGG - chr3_1:82125562-82125581 Msa0380470:intron 50.0%
CCTAGTGGCTAGAACCTAGA+AGG + chr3_1:82125559-82125578 Msa0380480:intron 50.0%
CGGGTTCAAGGTTCAAAGGT+TGG - chr3_1:82125864-82125883 Msa0380470:intron 50.0%
CATTGAACCAGTGTAGGCAC+GGG - chr3_1:82125883-82125902 Msa0380470:intron 50.0%
!! GCCTACACTGGTTCAATGTC+CGG + chr3_1:82125885-82125904 Msa0380480:intron 50.0%
ACCGGACATTGAACCAGTGT+AGG - chr3_1:82125889-82125908 Msa0380470:intron 50.0%
GAGGCGCAATCTAGTAGAAC+AGG + chr3_1:82126244-82126263 Msa0380480:intron 50.0%
TGAAGAGCAACAGGCAAGAC+AGG + chr3_1:82126412-82126431 Msa0380480:CDS 50.0%
GGAACTTGCAAAGCTCAGAG+TGG + chr3_1:82126439-82126458 Msa0380480:CDS 50.0%
AGAGTGGAAGAGATGGAGCA+AGG + chr3_1:82126455-82126474 Msa0380480:CDS 50.0%
AGCAACTTCCAGTTGTGCCT+TGG - chr3_1:82126507-82126526 Msa0380470:intron 50.0%
AGCAGCTGTGAAAGAAGAGC+TGG + chr3_1:82126559-82126578 Msa0380480:CDS 50.0%
AGAGCTGGATGCATTGCGTA+AGG + chr3_1:82126574-82126593 Msa0380480:CDS 50.0%
TCTAAACTGGAAGCAGCCTC+TGG + chr3_1:82126887-82126906 Msa0380480:CDS 50.0%
! GGTGATGATGAACTCTCGCA+AGG + chr3_1:82126971-82126990 Msa0380480:CDS 50.0%
GATGATGAACTCTCGCAAGG+AGG + chr3_1:82126974-82126993 Msa0380480:CDS 50.0%
CACAGATATACAAGCAGCCG+TGG + chr3_1:82127024-82127043 Msa0380480:CDS 50.0%
AGCCAGAAAGGAACTTGAGG+AGG + chr3_1:82127051-82127070 Msa0380480:CDS 50.0%
TGCCTCGATTAGGCAAAGAG+AGG + chr3_1:82127171-82127190 Msa0380480:CDS 50.0%
GCCTCGATTAGGCAAAGAGA+GGG + chr3_1:82127172-82127191 Msa0380480:CDS 50.0%
TCCCTCTCTTTGCCTAATCG+AGG - chr3_1:82127176-82127195 Msa0380470:intron 50.0%
GCTGCAACTAACAGCTGAAG+AGG + chr3_1:82127315-82127334 Msa0380480:CDS 50.0%
AGCTGCTTGAGCAAGCAAGT+TGG - chr3_1:82127350-82127369 Msa0380470:intron 50.0%
! CAAGGTACTTACTCCAGCCT+TGG - chr3_1:82127413-82127432 Msa0380470:intron 50.0%
CAAGGCTGGAGTAAGTACCT+TGG + chr3_1:82127411-82127430 Msa0380480:CDS 50.0%
AAAGTGTAACCCCACTGGAC+GGG - chr3_1:82127558-82127577 Msa0380470:intron 50.0%
! GAAAGTGTAACCCCACTGGA+CGG - chr3_1:82127559-82127578 Msa0380470:intron 50.0%
CAGAAGAGCGAGCCAATACA+AGG + chr3_1:82127620-82127639 Msa0380480:CDS 50.0%
AATGAGCAACGGAGAAAGGC+TGG + chr3_1:82127832-82127851 Msa0380480:CDS 50.0%
! TAGCCCTGGGGCTTTTATTC+TGG - chr3_1:82127882-82127901 Msa0380470:intron 50.0%
CAGATCTCCAAAAGGATGGG+AGG - chr3_1:82128170-82128189 Msa0380470:intron 50.0%
AGCTGTACTGTGCCAGTACA+CGG + chr3_1:82128217-82128236 Msa0380480:three_prime_UTR 50.0%
GTCCTCACAAAACACTGAGC+AGG - chr3_1:82128306-82128325 Msa0380470:intron 50.0%
GTTGTGGACCTTCTGATGCA+TGG + chr3_1:82128577-82128596 Msa0380480:three_prime_UTR 50.0%
TTTCGGGAAGGTTCCTGTTC+TGG + chr3_1:82128655-82128674 Msa0380480:three_prime_UTR 50.0%
! ATACTTATCCGCACCGGCAC+CGG + chr3_1:82122645-82122664 Msa0380480:intron 55.0%
CTCCCGAGCCCTCCTTATAA+TGG + chr3_1:82123470-82123489 Msa0380480:exon 55.0%
CCGAGCCCTCCTTATAATGG+AGG + chr3_1:82123473-82123492 Msa0380480:exon 55.0%
!! TCAACCTGCTTGGTTTGGGC+GGG - chr3_1:82124263-82124282 Msa0380470:intron 55.0%
GGCTCATCGAATCCAGACTG+TGG + chr3_1:82124370-82124389 Msa0380480:CDS 55.0%
TGGCAGTTGCAGTCGTGCTT+TGG + chr3_1:82124645-82124664 Msa0380480:intron 55.0%
CAGTTGCAGTCGTGCTTTGG+TGG + chr3_1:82124648-82124667 Msa0380480:intron 55.0%
GGTTGAACCGGACCTATGTC+TGG + chr3_1:82125108-82125127 Msa0380480:intron 55.0%
AACCGTGCAAAAGTGGCGGT+TGG + chr3_1:82125184-82125203 Msa0380480:intron 55.0%
ACCGTGCAAAAGTGGCGGTT+GGG + chr3_1:82125185-82125204 Msa0380480:intron 55.0%
GGAGAAGGGAGAAGAAGAGG+AGG + chr3_1:82125374-82125393 Msa0380480:intron 55.0%
GAAGAAGAGGAGGGTAGACG+TGG + chr3_1:82125384-82125403 Msa0380480:intron 55.0%
GTGAGAAAACGGTCTGACCC+TGG + chr3_1:82125827-82125846 Msa0380480:intron 55.0%
GGCACGGGTTCAAGGTTCAA+AGG - chr3_1:82125868-82125887 Msa0380470:intron 55.0%
GCAACAGGCAAGACAGGACT+CGG + chr3_1:82126418-82126437 Msa0380480:CDS 55.0%
CGAATCTAGCGTTGCAGCCA+AGG + chr3_1:82126487-82126506 Msa0380480:CDS 55.0%
GGATGCTGTAACTGCCTCCT+CGG - chr3_1:82126645-82126664 Msa0380470:intron 55.0%
GGAGGCAGTTACAGCATCCA+AGG + chr3_1:82126646-82126665 Msa0380480:CDS 55.0%
GACTGCTCATGCTGCACACT+TGG + chr3_1:82126730-82126749 Msa0380480:CDS 55.0%
TGCTGCACACTTGGAAGCAG+AGG + chr3_1:82126739-82126758 Msa0380480:CDS 55.0%
AGCCGTGGAATCAGCCAGAA+AGG + chr3_1:82127039-82127058 Msa0380480:CDS 55.0%
GGCAGAAGCAGAACAAGCCA+AGG + chr3_1:82127393-82127412 Msa0380480:CDS 55.0%
GAAGCAGAACAAGCCAAGGC+TGG + chr3_1:82127397-82127416 Msa0380480:CDS 55.0%
AATGAAGTGGACCCGTCCAG+TGG + chr3_1:82127544-82127563 Msa0380480:CDS 55.0%
ATGAAGTGGACCCGTCCAGT+GGG + chr3_1:82127545-82127564 Msa0380480:CDS 55.0%
GCTTAGCAAACGAGCTCACG+AGG + chr3_1:82127597-82127616 Msa0380480:CDS 55.0%
!!! AAGCCCCAGGGCTAGTTTTG+AGG + chr3_1:82127888-82127907 Msa0380480:CDS 55.0%
!!! AGCCCCAGGGCTAGTTTTGA+GGG + chr3_1:82127889-82127908 Msa0380480:CDS 55.0%
!!! GGCTAGTTTTGAGGGGGGTA+AGG + chr3_1:82127897-82127916 Msa0380480:CDS 55.0%
! TGTGAGTATCGTGCCGGTGC+CGG - chr3_1:82122661-82122680 Msa0380470:intron 60.0%
!!! GCCCAACCGCCACTTTTGCA+CGG - chr3_1:82125189-82125208 Msa0380470:intron 60.0%
TGCAAAAGTGGCGGTTGGGC+CGG + chr3_1:82125189-82125208 Msa0380480:intron 60.0%
GTTGGGCCGGATCCATAGGT+TGG + chr3_1:82125202-82125221 Msa0380480:intron 60.0%
GGTTGGACAGGGTTCGACCA+GGG - chr3_1:82125847-82125866 Msa0380470:intron 60.0%
AGGTTGGACAGGGTTCGACC+AGG - chr3_1:82125848-82125867 Msa0380470:intron 60.0%
CCAGTGTAGGCACGGGTTCA+AGG - chr3_1:82125876-82125895 Msa0380470:intron 60.0%
CCTTGAACCCGTGCCTACAC+TGG + chr3_1:82125873-82125892 Msa0380480:intron 60.0%
CGTTGCAGCCAAGGCACAAC+TGG + chr3_1:82126496-82126515 Msa0380480:CDS 60.0%
TGAAGTGGACCCGTCCAGTG+GGG + chr3_1:82127546-82127565 Msa0380480:CDS 60.0%
CGGAGAAAGGCTGGTGAGTC+TGG + chr3_1:82127841-82127860 Msa0380480:CDS 60.0%
AAGGCTGGTGAGTCTGGCCA+AGG + chr3_1:82127847-82127866 Msa0380480:CDS 60.0%
TGGTGAGTCTGGCCAAGGAG+TGG + chr3_1:82127852-82127871 Msa0380480:CDS 60.0%
!!! GCCCCAGGGCTAGTTTTGAG+GGG + chr3_1:82127890-82127909 Msa0380480:CDS 60.0%
CCCCCTCAAAACTAGCCCTG+GGG - chr3_1:82127894-82127913 Msa0380470:intron 60.0%
!!! CCCCAGGGCTAGTTTTGAGG+GGG + chr3_1:82127891-82127910 Msa0380480:CDS 60.0%
CCCCCCTCAAAACTAGCCCT+GGG - chr3_1:82127895-82127914 Msa0380470:intron 60.0%
!!! CCCAGGGCTAGTTTTGAGGG+GGG + chr3_1:82127892-82127911 Msa0380480:CDS 60.0%
ACCCCCCTCAAAACTAGCCC+TGG - chr3_1:82127896-82127915 Msa0380470:intron 60.0%
!! GGGCTCGGGAGTGCTAACAG+CGG - chr3_1:82123461-82123480 Msa0380470:intron 65.0%
CTCACCCGCCCAAACCAAGC+AGG + chr3_1:82124256-82124275 Msa0380480:CDS 65.0%
ACCGGATCGGCCGGTTGAAC+CGG + chr3_1:82125096-82125115 Msa0380480:intron 65.0%
TCCGGTTCAACCGGCCGATC+CGG - chr3_1:82125100-82125119 Msa0380470:intron 65.0%
!! GTATCGTGCCGGTGCCGGTG+CGG - chr3_1:82122656-82122675 Msa0380470:intron 70.0%
GGCGGTTGGGCCGGATCCAT+AGG + chr3_1:82125198-82125217 Msa0380480:intron 70.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 82122101 82128745 82122101 ID=Msa0380480;Name=Msa0380480
chr3_1 mRNA 82122101 82128745 82122101 ID=Msa0380480-mRNA-1;Parent=Msa0380480;Name=Msa0380480-mRNA-1;_AED=0.25;_eAED=0.25;_QI=358|1|1|1|0.5|0.33|3|623|927
chr3_1 exon 82122101 82122437 82122101 ID=Msa0380480-mRNA-1:exon:20945;Parent=Msa0380480-mRNA-1
chr3_1 exon 82123468 82124394 82123468 ID=Msa0380480-mRNA-1:exon:20946;Parent=Msa0380480-mRNA-1
chr3_1 exon 82126245 82128745 82126245 ID=Msa0380480-mRNA-1:exon:20947;Parent=Msa0380480-mRNA-1
chr3_1 five_prime_UTR 82122101 82122437 82122101 ID=Msa0380480-mRNA-1:five_prime_utr;Parent=Msa0380480-mRNA-1
chr3_1 five_prime_UTR 82123468 82123488 82123468 ID=Msa0380480-mRNA-1:five_prime_utr;Parent=Msa0380480-mRNA-1
chr3_1 CDS 82123489 82124394 82123489 ID=Msa0380480-mRNA-1:cds;Parent=Msa0380480-mRNA-1
chr3_1 CDS 82126245 82128122 82126245 ID=Msa0380480-mRNA-1:cds;Parent=Msa0380480-mRNA-1
chr3_1 three_prime_UTR 82128123 82128745 82128123 ID=Msa0380480-mRNA-1:three_prime_utr;Parent=Msa0380480-mRNA-1
Gene Sequence

>Msa0380480

ATGGAGGATGTTCAAGACAAGTTGCCCTCTGACTCCTCTACAAAAATTGCTGAAGAGACACCACTAGCAGAACATATTGAAGACATATTACCCTCTGAATCCTCTTCAAAAGTTACTGAAGAGATACCACTAGCAGAACATGTTGAAGACATGTTGCCCTCTGATTCTGAATCCTCTTCAAAAGTTACTGAAGAGACACATATGGCTGAACACGTTGAAGACAAGCTACCATCTGAATCCCCTTCAAAAATTTCTGAAGAGACGCCACTGGCAGAACATGTTGAAGACAATCTACTCTCTGAGTGCTCTACAAAAGTTACTGAGACACAACTGATGGAATCCTCTGAAGAAAATACCGAAGTGGTAAACCCACCACATAATCAATCTTCCTCAGAACTTCCAATTCCACTTAGTAACGGAGAAGTGGAGTCTGGCTCTCACTTGACAGTAAATGAGCTCCCTGAATTATCAGTGTTGCCAAATGTTTCTGATGGTCAAACTATAATACAAGATGAGGATGTTTCTGTAGATAATTCAGCTTCAGTTCCAAATGATACAGTGGATGTGACAGAAACAAGCGACCAGCTAAATTTGGTTGAAGATTCTAAACCAGGTGCTCCAGAAGATATCTCTGACCAGCATGAATTGCAGGTTGATGTTACTAATGTCGCTGCAGATAATGAGATTAGACTTTCAGCTTCCTCTTCTGAAACAAAAGATTTGTTAAATGATCTTAATGAAGTAAAGATGTCTTCTGGAGCAGTTGACTCACCCGCCCAAACCAAGCAGGTTGATGTAAAAAGAGGTCTTATTGATACCACACCTCCATTCGAATCTGTCAAGGAAGCTGTTTCTAAGTTTGGAGGAATTGTCGATTGGAAGGCTCATCGAATCCAGACTGTGGAGAGGCGCAATCTAGTAGAACAGGAACTTGATAAAGCAAATGAAGAGATACCAGAATACAGAAAACAAGCAGAGACGGCTGAACAGACGAAAAATCAAGTACTAAAGGAGCTGGACAGCACCAAGAGACTTATAGAAGAGTTAAAGCTTAACCTAGAGAGAGCACAAACTGAAGAGCAACAGGCAAGACAGGACTCGGAACTTGCAAAGCTCAGAGTGGAAGAGATGGAGCAAGGTATTGCAGACGAATCTAGCGTTGCAGCCAAGGCACAACTGGAAGTTGCTAAAGCTAGGTATACGGCAGCTATTACAGATTTAGCAGCTGTGAAAGAAGAGCTGGATGCATTGCGTAAGGAATATGCTTCCTTAGTGACTGATAGAGATGAAGCTATTAAGAAAGCCGAGGAGGCAGTTACAGCATCCAAGGAAGTAGAGAAGTCAGTGGAAGATTTAACTATTGAACTAATAGCCACAAAAGAGTCATTAGAGACTGCTCATGCTGCACACTTGGAAGCAGAGGAACAAAGAATAGGAACAGTCATGGCAAGAGATCAAGATTCACTCAATTGGGAGAAGGAACTTAAACAGGCAGAAGAAGAGCTCCAGAGAATCAATGAGCAAATGTTGTCTGCAAAGGATCTCAAATCTAAACTGGAAGCAGCCTCTGGTTTGCTGCTTGATTTGAAAGCTAAATTAACTGTTTATATGGAATCAAAGTTAAAGCAAGAAGGTGATGATGAACTCTCGCAAGGAGGCCAAGAAGAACCAGAAAAGAAGACACACACAGATATACAAGCAGCCGTGGAATCAGCCAGAAAGGAACTTGAGGAGGTAAAACTAAACATAGAGAAAGCAAATGCTGAGGTTAGTTGCTTGAAGCTAGCTGCTACATCTTTAAAATCAGAACTGGAACAAGAAAAATCATCTCTTGCCTCGATTAGGCAAAGAGAGGGAATGGCCTCCATTGCAGTTGCATCTCTAGAAGCTGAATTGGACAAGACTAGATCAGAAATAGCTTTGGTTCAAATGAAGGAGAAAGAAGCCAAAGAACAAATGACCGAACTTCCAAAGAAGCTGCAACTAACAGCTGAAGAGGCTAATCAGGCCAACTTGCTTGCTCAAGCAGCTCGTGAAGAACTGCAGAAAGTAAAGGCAGAAGCAGAACAAGCCAAGGCTGGAGTAAGTACCTTGGAAAGCAGGTTACTTGCAGCTCAAAAGGAGATAGAGGCTGCAAAGGCTTCTGAAAAGTTGGCAATAGCAGCAATTAAAGCATTGCAAGAGAGTGAAGCAAATAGAAGCAAAAATGAAGTGGACCCGTCCAGTGGGGTTACACTTTCTTTGGATGAGTACTATGAGCTTAGCAAACGAGCTCACGAGGCAGAAGAGCGAGCCAATACAAGGATTGCAGCTGCTAATTCTGAAGTTGAGGTAGCTAAGGAGTCTGAACTGAAATCCTTCGAGAAGTTGGATGAAGTGAATAGAGAGATAGCTGCTAGAAGGGAATCCTTGAAGATGGCAATGGAAAAAGCTGAGAAGGCAAAGGAAGGTAAATTAGGTGTAGAACAAGAACTTAGAAGGTGGAGAGCTGAAAATGAGCAACGGAGAAAGGCTGGTGAGTCTGGCCAAGGAGTGGTTAACCAGAATAAAAGCCCCAGGGCTAGTTTTGAGGGGGGTAAGGAAGCAAATAATTTTGACCGGTCCCAGTATGCAACTAATCCTGCACAATATTTGTCAAGTCCGAAGACTTATATGCATGCAGAAAAAGATGAAGGTGGATCATCACCGGAATCAAAACATGGAAAAAAGAAGAAGAAATCGTTGTTCCCACGGGTTATGATGTTCTTTGCTAGAAGAAAAACACATTCAAACAAGTCAGGGTAA
Protein sequence

>Msa0380480

MEDVQDKLPSDSSTKIAEETPLAEHIEDILPSESSSKVTEEIPLAEHVEDMLPSDSESSSKVTEETHMAEHVEDKLPSESPSKISEETPLAEHVEDNLLSECSTKVTETQLMESSEENTEVVNPPHNQSSSELPIPLSNGEVESGSHLTVNELPELSVLPNVSDGQTIIQDEDVSVDNSASVPNDTVDVTETSDQLNLVEDSKPGAPEDISDQHELQVDVTNVAADNEIRLSASSSETKDLLNDLNEVKMSSGAVDSPAQTKQVDVKRGLIDTTPPFESVKEAVSKFGGIVDWKAHRIQTVERRNLVEQELDKANEEIPEYRKQAETAEQTKNQVLKELDSTKRLIEELKLNLERAQTEEQQARQDSELAKLRVEEMEQGIADESSVAAKAQLEVAKARYTAAITDLAAVKEELDALRKEYASLVTDRDEAIKKAEEAVTASKEVEKSVEDLTIELIATKESLETAHAAHLEAEEQRIGTVMARDQDSLNWEKELKQAEEELQRINEQMLSAKDLKSKLEAASGLLLDLKAKLTVYMESKLKQEGDDELSQGGQEEPEKKTHTDIQAAVESARKELEEVKLNIEKANAEVSCLKLAATSLKSELEQEKSSLASIRQREGMASIAVASLEAELDKTRSEIALVQMKEKEAKEQMTELPKKLQLTAEEANQANLLAQAAREELQKVKAEAEQAKAGVSTLESRLLAAQKEIEAAKASEKLAIAAIKALQESEANRSKNEVDPSSGVTLSLDEYYELSKRAHEAEERANTRIAAANSEVEVAKESELKSFEKLDEVNREIAARRESLKMAMEKAEKAKEGKLGVEQELRRWRAENEQRRKAGESGQGVVNQNKSPRASFEGGKEANNFDRSQYATNPAQYLSSPKTYMHAEKDEGGSSPESKHGKKKKKSLFPRVMMFFARRKTHSNKSG*