AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0500590

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0500590 MtrunA17_Chr3g0133891 95.354 947 24 1 1 927 1 947 0.0 1779
Msa0500590 MtrunA17_Chr1g0153431 66.057 766 236 7 173 927 167 919 0.0 906
Msa0500590 MtrunA17_Chr8g0369191 51.982 681 265 13 256 925 6 635 3.17e-171 512
Msa0500590 MtrunA17_Chr3g0102681 29.412 595 386 8 249 836 4 571 1.45e-33 138
Msa0500590 MtrunA17_Chr4g0013151 34.091 264 169 2 574 836 229 488 1.40e-26 116
Msa0500590 MtrunA17_Chr7g0244501 31.047 277 187 2 575 851 177 449 1.55e-26 115
Msa0500590 MtrunA17_Chr2g0290651 28.718 585 349 14 271 831 22 562 2.24e-26 115
Msa0500590 MtrunA17_Chr5g0446731 28.892 668 414 16 269 921 21 642 3.43e-23 105
Msa0500590 MtrunA17_Chr3g0078801 29.630 594 373 13 269 846 21 585 5.47e-20 95.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0500590 AT2G26570.1 67.311 673 209 3 252 924 146 807 0.0 838
Msa0500590 AT2G26570.2 67.311 673 209 3 252 924 146 807 0.0 838
Msa0500590 AT4G33390.1 61.061 660 226 6 264 922 149 778 0.0 692
Msa0500590 AT5G42880.1 48.817 676 303 7 251 925 118 751 1.38e-175 528
Msa0500590 AT1G45545.1 47.904 668 267 10 270 925 154 752 2.40e-169 512
Msa0500590 AT1G45545.2 47.904 668 267 10 270 925 155 753 2.45e-169 512
Msa0500590 AT5G55860.1 27.697 686 423 15 253 922 6 634 3.71e-21 99.8
Msa0500590 AT2G38370.2 28.173 323 199 5 519 841 113 402 1.33e-15 81.6
Msa0500590 AT2G38370.1 28.173 323 199 5 519 841 96 385 2.21e-15 80.9
Msa0500590 AT1G12150.2 23.902 569 378 8 269 829 19 540 7.67e-11 66.2
Msa0500590 AT1G12150.1 23.902 569 378 8 269 829 19 540 7.67e-11 66.2

Find 233 sgRNAs with CRISPR-Local

Find 452 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TACCTCCTCAAGTTCCTTTC+TGG 0.088150 3_4:+41091474 None:intergenic
CAATGCACATAATTTCAATT+TGG 0.147472 3_4:+41090402 None:intergenic
CACCTGATTAGGAAGTAATT+AGG 0.198633 3_4:+41096288 None:intergenic
AGCTAAATTAACTGTTTATA+TGG 0.204674 3_4:-41091599 Msa0500590:CDS
AACAAGCGACCAGCTAAATT+TGG 0.239282 3_4:-41094473 Msa0500590:CDS
CAGTGGGGTTACACTTTCTT+TGG 0.239820 3_4:-41090966 Msa0500590:CDS
TATCTTGCCTCCCATCCTTT+TGG 0.256194 3_4:-41090367 Msa0500590:three_prime_UTR
GCTGTTAGTTGCAGCTTCTT+TGG 0.261793 3_4:+41091220 None:intergenic
TTTCGGGAAGGTTCCTGTTC+TGG 0.262334 3_4:-41089873 Msa0500590:three_prime_UTR
TCAATCAATATAGTGAGTTT+TGG 0.270356 3_4:+41090018 None:intergenic
CACTGACTTCTCTACTTCCT+TGG 0.274617 3_4:+41091864 None:intergenic
AAGGAAGCTGTTTCTAAGTT+TGG 0.278467 3_4:-41094205 Msa0500590:CDS
TTGTGAGGACTTAAGAAAAT+AGG 0.279719 3_4:-41090212 Msa0500590:three_prime_UTR
CTTGAACATCCTCCATTATA+AGG 0.281721 3_4:+41095052 None:intergenic
AAGTTCGGTCATTTGTTCTT+TGG 0.298214 3_4:+41091243 None:intergenic
TGAGATTGTGGAAAAGTAAA+AGG 0.304092 3_4:+41096387 None:intergenic
CTCACTTGATGGATGGTATA+CGG 0.304973 3_4:-41090251 Msa0500590:three_prime_UTR
CGGAGAAAGGCTGGTGAGTC+TGG 0.309159 3_4:-41090686 Msa0500590:CDS
TTTGGCAACACTGATAATTC+AGG 0.310576 3_4:+41094586 None:intergenic
AATGCACATAATTTCAATTT+GGG 0.317639 3_4:+41090403 None:intergenic
GAGATCAAGATTCACTCAAT+TGG 0.319924 3_4:-41091738 Msa0500590:CDS
TACATCAACCTGCTTGGTTT+GGG 0.329348 3_4:+41094270 None:intergenic
TTACATCAACCTGCTTGGTT+TGG 0.331984 3_4:+41094269 None:intergenic
TGCATCTCTAGAAGCTGAAT+TGG 0.337620 3_4:-41091314 Msa0500590:CDS
CTCTGACCAGCATGAATTGC+AGG 0.342985 3_4:-41094416 Msa0500590:CDS
CTCCCGAGCCCTCCTTATAA+TGG 0.343343 3_4:-41095064 Msa0500590:exon
AATGAAGTAAAGATGTCTTC+TGG 0.344172 3_4:-41094310 Msa0500590:CDS
AAGGCAAAGGAAGGTAAATT+AGG 0.350324 3_4:-41090752 Msa0500590:CDS
AGGAAATTCAAACAGAATAA+TGG 0.351259 3_4:+41089804 None:intergenic
CGTTGCAGCCAAGGCACAAC+TGG 0.354618 3_4:-41092031 Msa0500590:CDS
AACAGCTGAAGAGGCTAATC+AGG 0.354780 3_4:-41091203 Msa0500590:CDS
TCTCCGTTACTAAGTGGAAT+TGG 0.361118 3_4:+41094646 None:intergenic
ACATTTGCTCATTGATTCTC+TGG 0.363605 3_4:+41091683 None:intergenic
GTCACATCCACTGTATCATT+TGG 0.367014 3_4:+41094499 None:intergenic
ACTTCGCAAAACACCTGATT+AGG 0.370968 3_4:+41096277 None:intergenic
GTGCAGGATTAGTTGCATAC+TGG 0.374116 3_4:+41090585 None:intergenic
ATTGGATTATACTCACTTGA+TGG 0.379193 3_4:-41090262 Msa0500590:three_prime_UTR
ATATTGATACTAATTATTAG+AGG 0.380745 3_4:+41096352 None:intergenic
CTTCAGTTTGTGCTCTCTCT+AGG 0.384605 3_4:+41092133 None:intergenic
TAACTCTTCTATAAGTCTCT+TGG 0.385789 3_4:+41092164 None:intergenic
AAAGGATCTCAAATCTAAAC+TGG 0.393667 3_4:-41091653 Msa0500590:CDS
TGCTGGTCAGAGATATCTTC+TGG 0.394578 3_4:+41094427 None:intergenic
TTGCAGCTTCTTTGGAAGTT+CGG 0.399807 3_4:+41091228 None:intergenic
AGCACAAACTGAAGAGCAAC+AGG 0.400039 3_4:-41092124 Msa0500590:CDS
TGCATGGAATATACACATAA+AGG 0.407863 3_4:-41089935 Msa0500590:three_prime_UTR
AGCAGCTGCAATCCTTGTAT+TGG 0.408027 3_4:+41090895 None:intergenic
CACCTTCAACCGTTGATGTT+CGG 0.408491 3_4:+41096169 None:intergenic
CACGGTGATCGATTTGTGTA+TGG 0.409462 3_4:-41090292 Msa0500590:three_prime_UTR
AGCAACTTCCAGTTGTGCCT+TGG 0.410573 3_4:+41092023 None:intergenic
TCCCTAATTACTTCCTAATC+AGG 0.415170 3_4:-41096290 Msa0500590:five_prime_UTR
GTTTGACCATCAGAAACATT+TGG 0.415469 3_4:+41094568 None:intergenic
AAAGAAAAGAAAAGAAAAGA+AGG 0.416352 3_4:+41096417 None:intergenic
ACCTGATTAGGAAGTAATTA+GGG 0.419012 3_4:+41096289 None:intergenic
AATAGCTTTGGTTCAAATGA+AGG 0.419296 3_4:-41091275 Msa0500590:CDS
TACTGGCACAGTACAGCTTT+TGG 0.420919 3_4:+41090315 None:intergenic
GAAAATAGGTTCGTCTATGT+TGG 0.421649 3_4:-41090198 Msa0500590:three_prime_UTR
CACAACTAGTGAACTGTGAA+TGG 0.421857 3_4:+41089968 None:intergenic
AAAACACATTCAAACAAGTC+AGG 0.424040 3_4:-41090431 Msa0500590:CDS
CAGGTTACTTGCAGCTCAAA+AGG 0.424256 3_4:-41091089 Msa0500590:CDS
ATAGAGAGATAGCTGCTAGA+AGG 0.425984 3_4:-41090808 Msa0500590:CDS
TCTGCATGCATATAAGTCTT+CGG 0.426670 3_4:+41090548 None:intergenic
CAAGGTACTTACTCCAGCCT+TGG 0.427633 3_4:+41091117 None:intergenic
GACTGCTCATGCTGCACACT+TGG 0.430032 3_4:-41091797 Msa0500590:CDS
TTGGGAGAAGGAACTTAAAC+AGG 0.433707 3_4:-41091719 Msa0500590:CDS
AATCTTCAACCAAATTTAGC+TGG 0.435466 3_4:+41094464 None:intergenic
ATCATCAAATGATCCAGAAC+AGG 0.443786 3_4:+41089860 None:intergenic
CCTCCATTATAAGGAGGGCT+CGG 0.447164 3_4:+41095061 None:intergenic
TGCAAAGGCTTCTGAAAAGT+TGG 0.447891 3_4:-41091056 Msa0500590:CDS
TTCCTTTCTGGCTGATTCCA+CGG 0.450504 3_4:+41091486 None:intergenic
TATTCTGGTTAACCACTCCT+TGG 0.457248 3_4:+41090663 None:intergenic
AGTTGCTAAAGCTAGGTATA+CGG 0.460121 3_4:-41092007 Msa0500590:CDS
CGAATCTAGCGTTGCAGCCA+AGG 0.460134 3_4:-41092040 Msa0500590:CDS
GACTAGATCAGAAATAGCTT+TGG 0.461244 3_4:-41091287 Msa0500590:CDS
AGATCAAGATTCACTCAATT+GGG 0.461638 3_4:-41091737 Msa0500590:CDS
ACTGAAATCCTTCGAGAAGT+TGG 0.462011 3_4:-41090840 Msa0500590:CDS
TTTGTGTATGGTTTGACGAT+TGG 0.465802 3_4:-41090280 Msa0500590:three_prime_UTR
TGCAGGATTAGTTGCATACT+GGG 0.468145 3_4:+41090586 None:intergenic
AAAATAGGTTCGTCTATGTT+GGG 0.475771 3_4:-41090197 Msa0500590:three_prime_UTR
GTGTAGAACAAGAACTTAGA+AGG 0.477088 3_4:-41090730 Msa0500590:CDS
AATCATCTCTTGCCTCGATT+AGG 0.477119 3_4:-41091366 Msa0500590:CDS
GAAGCTGTTTCTAAGTTTGG+AGG 0.479133 3_4:-41094202 Msa0500590:CDS
ATCAACCTGCTTGGTTTGGG+CGG 0.480255 3_4:+41094273 None:intergenic
GAAGCAGAACAAGCCAAGGC+TGG 0.481127 3_4:-41091130 Msa0500590:CDS
GAGGCGCAATCTAGTAGAAC+AGG 0.482497 3_4:-41092283 Msa0500590:CDS
TACATCTTTAAAATCAGAAC+TGG 0.483592 3_4:-41091398 Msa0500590:CDS
TTCTGAAGTTGAGGTAGCTA+AGG 0.484672 3_4:-41090870 Msa0500590:CDS
TGAAAATGAGCAACGGAGAA+AGG 0.485253 3_4:-41090699 Msa0500590:CDS
GAGTAAGTACCTTGGAAAGC+AGG 0.485484 3_4:-41091108 Msa0500590:CDS
ATCTGAGTGACTCGAAATGT+TGG 0.487709 3_4:-41090342 Msa0500590:three_prime_UTR
TGAAGAGCAACAGGCAAGAC+AGG 0.487822 3_4:-41092115 Msa0500590:CDS
ACATATATACCTCCACAGTC+TGG 0.487953 3_4:+41094152 None:intergenic
TCTAAACTGGAAGCAGCCTC+TGG 0.489857 3_4:-41091640 Msa0500590:CDS
GGACTTGACAAATATTGTGC+AGG 0.492349 3_4:+41090569 None:intergenic
TGCAGCTCAAAAGGAGATAG+AGG 0.495277 3_4:-41091080 Msa0500590:CDS
GTGATTTGAAGCACTTTGAA+TGG 0.495742 3_4:-41090056 Msa0500590:three_prime_UTR
ATGAAATTAAAGTGAGATTG+TGG 0.499806 3_4:+41096375 None:intergenic
AAATCAAGTACTAAAGGAGC+TGG 0.502391 3_4:-41092193 Msa0500590:CDS
CACTCAGATCTCCAAAAGGA+TGG 0.503255 3_4:+41090356 None:intergenic
AGTAACGGAGAAGTGGAGTC+TGG 0.504133 3_4:-41094634 Msa0500590:CDS
TAGAGAGATAGCTGCTAGAA+GGG 0.509873 3_4:-41090807 Msa0500590:CDS
TCAACCTGCTTGGTTTGGGC+GGG 0.510437 3_4:+41094274 None:intergenic
TTCCGAACATCAACGGTTGA+AGG 0.511277 3_4:-41096171 Msa0500590:five_prime_UTR
ACAAATCGATCACCGTGTAC+TGG 0.512599 3_4:+41090298 None:intergenic
TTCATCTCTATCAGTCACTA+AGG 0.513821 3_4:+41091921 None:intergenic
GGAGGCAGTTACAGCATCCA+AGG 0.516525 3_4:-41091881 Msa0500590:CDS
GGAGATGATGGATCTAATCT+GGG 0.516680 3_4:-41096482 None:intergenic
CAGAAGAGCGAGCCAATACA+AGG 0.517906 3_4:-41090907 Msa0500590:CDS
CTCCATTATAAGGAGGGCTC+GGG 0.518464 3_4:+41095062 None:intergenic
AATGAGCAACGGAGAAAGGC+TGG 0.523536 3_4:-41090695 Msa0500590:CDS
GAAGCAGAGGAACAAAGAAT+AGG 0.523697 3_4:-41091775 Msa0500590:CDS
TTGGTTGAAGATTCTAAACC+AGG 0.523832 3_4:-41094454 Msa0500590:CDS
TCACTATATTGATTGATACT+AGG 0.524588 3_4:-41090011 Msa0500590:three_prime_UTR
TGCTGCACACTTGGAAGCAG+AGG 0.524988 3_4:-41091788 Msa0500590:CDS
CATTCACAGTTCACTAGTTG+TGG 0.530459 3_4:-41089967 Msa0500590:three_prime_UTR
TGGAGGAATTGTCGATTGGA+AGG 0.530992 3_4:-41094185 Msa0500590:CDS
GAGATATCTTCTGGAGCACC+TGG 0.532106 3_4:+41094436 None:intergenic
AGTTACTGAAGAGACACATA+TGG 0.533215 3_4:-41094863 Msa0500590:CDS
AGCAGCTGTGAAAGAAGAGC+TGG 0.533861 3_4:-41091968 Msa0500590:CDS
TCCACTTCTCCGTTACTAAG+TGG 0.535969 3_4:+41094640 None:intergenic
TTGGCAACACTGATAATTCA+GGG 0.536150 3_4:+41094587 None:intergenic
ATGTGGTGGGTTTACCACTT+CGG 0.537990 3_4:+41094690 None:intergenic
GAAGAAATCGTTGTTCCCAC+GGG 0.541661 3_4:-41090477 Msa0500590:CDS
AGGAAGATTGATTATGTGGT+GGG 0.543145 3_4:+41094677 None:intergenic
AGAAGAAATCGTTGTTCCCA+CGG 0.544605 3_4:-41090478 Msa0500590:CDS
GATTATACTCACTTGATGGA+TGG 0.544785 3_4:-41090258 Msa0500590:three_prime_UTR
CACTTCATCCAACTTCTCGA+AGG 0.544839 3_4:+41090832 None:intergenic
AGCTGCTAATTCTGAAGTTG+AGG 0.545403 3_4:-41090879 Msa0500590:CDS
AGCCGTGGAATCAGCCAGAA+AGG 0.546535 3_4:-41091488 Msa0500590:CDS
TGTGGAAAAGTAAAAGGAGG+TGG 0.547393 3_4:+41096393 None:intergenic
TGATGGATCTAATCTGGGGT+AGG 0.548716 3_4:-41096477 None:intergenic
TCTGAGGAAGATTGATTATG+TGG 0.549334 3_4:+41094673 None:intergenic
TCCTTGACAGATTCGAATGG+AGG 0.549570 3_4:+41094223 None:intergenic
GGATGCTGTAACTGCCTCCT+CGG 0.551757 3_4:+41091885 None:intergenic
ATGAAGTGGACCCGTCCAGT+GGG 0.555823 3_4:-41090982 Msa0500590:CDS
GCAACAGGCAAGACAGGACT+CGG 0.556999 3_4:-41092109 Msa0500590:CDS
AATACACGAGTGAAAGGAAA+CGG 0.558234 3_4:+41096194 None:intergenic
AAAGTGTAACCCCACTGGAC+GGG 0.558997 3_4:+41090972 None:intergenic
AGTTTGGAGGAATTGTCGAT+TGG 0.559426 3_4:-41094189 Msa0500590:CDS
TGAGCAAATGTTGTCTGCAA+AGG 0.559704 3_4:-41091671 Msa0500590:CDS
GTCCTCACAAAACACTGAGC+AGG 0.559854 3_4:+41090225 None:intergenic
TCCACTTAGTAACGGAGAAG+TGG 0.562086 3_4:-41094641 Msa0500590:CDS
GATTAGTTGCATACTGGGAC+CGG 0.562727 3_4:+41090591 None:intergenic
TGAAGAGGATTCAGAATCAG+AGG 0.565843 3_4:+41094888 None:intergenic
TGAAGAACTGCAGAAAGTAA+AGG 0.567540 3_4:-41091155 Msa0500590:CDS
TCGGAAAATACACGAGTGAA+AGG 0.570436 3_4:+41096188 None:intergenic
ACAACTAGTGAACTGTGAAT+GGG 0.572318 3_4:+41089969 None:intergenic
GATTAGGCAAAGAGAGGGAA+TGG 0.573233 3_4:-41091350 Msa0500590:CDS
TAGAAGGGAATCCTTGAAGA+TGG 0.574172 3_4:-41090792 Msa0500590:CDS
AACATCCTCCATTATAAGGA+GGG 0.578229 3_4:+41095056 None:intergenic
TCTTCAATATGTTCTGCTAG+TGG 0.579090 3_4:+41094985 None:intergenic
GATGGATCTAATCTGGGGTA+GGG 0.581404 3_4:-41096476 None:intergenic
AGATGAAGGTGGATCATCAC+CGG 0.581928 3_4:-41090522 Msa0500590:CDS
TAGAGATGCAACTGCAATGG+AGG 0.583713 3_4:+41091327 None:intergenic
AGCTGCTTGAGCAAGCAAGT+TGG 0.584333 3_4:+41091180 None:intergenic
GAAGAGGATTCAGAATCAGA+GGG 0.585481 3_4:+41094889 None:intergenic
AATTTCTGAAGAGACGCCAC+TGG 0.586404 3_4:-41094797 Msa0500590:CDS
CAAAGAAAGTGTAACCCCAC+TGG 0.586929 3_4:+41090967 None:intergenic
GTTGTGGACCTTCTGATGCA+TGG 0.587074 3_4:-41089951 Msa0500590:three_prime_UTR
CACAGATATACAAGCAGCCG+TGG 0.587150 3_4:-41091503 Msa0500590:CDS
TGTATATTCCATGCATCAGA+AGG 0.587934 3_4:+41089943 None:intergenic
TGCAAGTAACCTGCTTTCCA+AGG 0.587944 3_4:+41091099 None:intergenic
GCTGCAACTAACAGCTGAAG+AGG 0.588648 3_4:-41091212 Msa0500590:CDS
AGAGCTGGATGCATTGCGTA+AGG 0.589983 3_4:-41091953 Msa0500590:CDS
CTCACCCGCCCAAACCAAGC+AGG 0.590022 3_4:-41094278 Msa0500590:CDS
CATCAACCTGCAATTCATGC+TGG 0.590549 3_4:+41094410 None:intergenic
GAGTCACTCAGATCTCCAAA+AGG 0.591878 3_4:+41090352 None:intergenic
TCTTCAACATGTTCTGCTAG+TGG 0.593335 3_4:+41094919 None:intergenic
GAATCAAAGTTAAAGCAAGA+AGG 0.593429 3_4:-41091577 Msa0500590:CDS
GGCAGAAGCAGAACAAGCCA+AGG 0.593446 3_4:-41091134 Msa0500590:CDS
TTAACCAGAATAAAAGCCCC+AGG 0.593700 3_4:-41090652 Msa0500590:CDS
TCTTCAACATGTTCTGCCAG+TGG 0.594746 3_4:+41094781 None:intergenic
ACAAATCTTTACACAAGCCG+AGG 0.596314 3_4:+41090121 None:intergenic
AGTTACTGAGACACAACTGA+TGG 0.596510 3_4:-41094731 Msa0500590:CDS
AGCTGTACTGTGCCAGTACA+CGG 0.596548 3_4:-41090310 Msa0500590:three_prime_UTR
GGAATCCTTGAAGATGGCAA+TGG 0.598116 3_4:-41090786 Msa0500590:CDS
AAAGGAGATAGAGGCTGCAA+AGG 0.598223 3_4:-41091071 Msa0500590:CDS
TCAAACTATAATACAAGATG+AGG 0.599392 3_4:-41094551 Msa0500590:CDS
TTCTAGAGATGCAACTGCAA+TGG 0.599491 3_4:+41091324 None:intergenic
AAAGCTCAGAGTGGAAGAGA+TGG 0.599941 3_4:-41092079 Msa0500590:CDS
TCCCTCTCTTTGCCTAATCG+AGG 0.600136 3_4:+41091354 None:intergenic
CTCTGAAGAAAATACCGAAG+TGG 0.600805 3_4:-41094704 Msa0500590:CDS
ACTCAGATCTCCAAAAGGAT+GGG 0.602523 3_4:+41090357 None:intergenic
AAGGCTGGTGAGTCTGGCCA+AGG 0.604901 3_4:-41090680 Msa0500590:CDS
GAGGAAGATTGATTATGTGG+TGG 0.606655 3_4:+41094676 None:intergenic
AGATTCACTCAATTGGGAGA+AGG 0.607074 3_4:-41091731 Msa0500590:CDS
CTTCCAATTCCACTTAGTAA+CGG 0.607417 3_4:-41094649 Msa0500590:CDS
ATCAGCCAGAAAGGAACTTG+AGG 0.607425 3_4:-41091479 Msa0500590:CDS
AATGAAGTGGACCCGTCCAG+TGG 0.610356 3_4:-41090983 Msa0500590:CDS
CCGAGCCCTCCTTATAATGG+AGG 0.611792 3_4:-41095061 Msa0500590:exon
AAACACATTCAAACAAGTCA+GGG 0.611913 3_4:-41090430 Msa0500590:CDS
GCCTCGATTAGGCAAAGAGA+GGG 0.612208 3_4:-41091355 Msa0500590:CDS
GAAAGTGTAACCCCACTGGA+CGG 0.613134 3_4:+41090971 None:intergenic
GAACATCCTCCATTATAAGG+AGG 0.613704 3_4:+41095055 None:intergenic
ACCTCCATTCGAATCTGTCA+AGG 0.613789 3_4:-41094224 Msa0500590:CDS
ATACAGAAAACAAGCAGAGA+CGG 0.617490 3_4:-41092229 Msa0500590:CDS
CAAGGCTGGAGTAAGTACCT+TGG 0.617948 3_4:-41091116 Msa0500590:CDS
AGTGCTTCAAATCACAAACA+TGG 0.620747 3_4:+41090064 None:intergenic
AGCCAGAAAGGAACTTGAGG+AGG 0.622529 3_4:-41091476 Msa0500590:CDS
AAGTGGAATTGGAAGTTCTG+AGG 0.622609 3_4:+41094657 None:intergenic
TGGTGAGTCTGGCCAAGGAG+TGG 0.623365 3_4:-41090675 Msa0500590:CDS
GCTTCCTTGACAGATTCGAA+TGG 0.625828 3_4:+41094220 None:intergenic
AACTGGAAGTTGCTAAAGCT+AGG 0.628167 3_4:-41092014 Msa0500590:CDS
GCAAAGAACATCATAACCCG+TGG 0.628232 3_4:+41090461 None:intergenic
TCTTCAGATATATTGAACCT+CGG 0.628243 3_4:-41090138 Msa0500590:three_prime_UTR
CAAGGAAGTAGAGAAGTCAG+TGG 0.629489 3_4:-41091863 Msa0500590:CDS
GTGTTGCCAAATGTTTCTGA+TGG 0.631392 3_4:-41094574 Msa0500590:CDS
TAATTAGGGATGAGATTAAG+CGG 0.631548 3_4:+41096303 None:intergenic
GACAGATTCGAATGGAGGTG+TGG 0.633110 3_4:+41094228 None:intergenic
GCTTAGCAAACGAGCTCACG+AGG 0.633240 3_4:-41090930 Msa0500590:CDS
ACAAAGAATAGGAACAGTCA+TGG 0.635786 3_4:-41091764 Msa0500590:CDS
GGTGATGATGAACTCTCGCA+AGG 0.637677 3_4:-41091556 Msa0500590:CDS
AGCTATTAAGAAAGCCGAGG+AGG 0.640981 3_4:-41091899 Msa0500590:CDS
CAGATCTCCAAAAGGATGGG+AGG 0.641222 3_4:+41090360 None:intergenic
TAGAACAAGAACTTAGAAGG+TGG 0.641248 3_4:-41090727 Msa0500590:CDS
AGAGTGGAAGAGATGGAGCA+AGG 0.643532 3_4:-41092072 Msa0500590:CDS
AAAGCTGAGAAGGCAAAGGA+AGG 0.644947 3_4:-41090761 Msa0500590:CDS
GGAGAGCTGAAAATGAGCAA+CGG 0.649631 3_4:-41090706 Msa0500590:CDS
TGAAGCTATTAAGAAAGCCG+AGG 0.649803 3_4:-41091902 Msa0500590:CDS
TGCCTCGATTAGGCAAAGAG+AGG 0.651833 3_4:-41091356 Msa0500590:CDS
CAAATCAAGCAGCAAACCAG+AGG 0.652776 3_4:+41091624 None:intergenic
TCATCACCGGAATCAAAACA+TGG 0.652989 3_4:-41090509 Msa0500590:CDS
GATTGTGGAAAAGTAAAAGG+AGG 0.654254 3_4:+41096390 None:intergenic
GGCTCATCGAATCCAGACTG+TGG 0.664456 3_4:-41094164 Msa0500590:CDS
GGAACTTGCAAAGCTCAGAG+TGG 0.665822 3_4:-41092088 Msa0500590:CDS
CATAGAGAAAGCAAATGCTG+AGG 0.667742 3_4:-41091443 Msa0500590:CDS
TTCAGTTCCAAATGATACAG+TGG 0.670675 3_4:-41094506 Msa0500590:CDS
TCATCGAATCCAGACTGTGG+AGG 0.679040 3_4:-41094161 Msa0500590:intron
CAAAGAACATCATAACCCGT+GGG 0.683684 3_4:+41090462 None:intergenic
TAACCAGAATAAAAGCCCCA+GGG 0.691189 3_4:-41090651 Msa0500590:CDS
GAGATGATGGATCTAATCTG+GGG 0.702539 3_4:-41096481 None:intergenic
GATGATGAACTCTCGCAAGG+AGG 0.713634 3_4:-41091553 Msa0500590:CDS
TGAAGTGGACCCGTCCAGTG+GGG 0.735490 3_4:-41090981 Msa0500590:CDS
GGGCTCGGGAGTGCTAACAG+CGG 0.757037 3_4:+41095076 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTGATATAGTTATAAAATTT+TGG + chr3_4:41093520-41093539 None:intergenic 10.0%
!! ATATTGATACTAATTATTAG+AGG + chr3_4:41089923-41089942 None:intergenic 15.0%
!!! TATTGTTATAATACTTCTTT+TGG - chr3_4:41091119-41091138 Msa0500590:CDS 15.0%
!! AAAAATACTAGTAAAAGAAA+AGG + chr3_4:41092646-41092665 None:intergenic 15.0%
!! TATCTAAAAATGTACTAAAA+CGG - chr3_4:41092988-41093007 Msa0500590:intron 15.0%
!!! ATTAGTAGTAACTTATTTTT+GGG + chr3_4:41093396-41093415 None:intergenic 15.0%
!!! AATTAGTAGTAACTTATTTT+TGG + chr3_4:41093397-41093416 None:intergenic 15.0%
!!! ATAATTTTTAAAGCTGTTTT+CGG - chr3_4:41096382-41096401 Msa0500590:five_prime_UTR 15.0%
!! AAAGAAAAGAAAAGAAAAGA+AGG + chr3_4:41089858-41089877 None:intergenic 20.0%
!! TCGATTTATTATGTATGTTA+TGG - chr3_4:41090266-41090285 Msa0500590:three_prime_UTR 20.0%
!!! CTAAAGTTGATAGATAATTT+GGG + chr3_4:41090742-41090761 None:intergenic 20.0%
!! AGTTAGATGAAATTATTTCA+AGG + chr3_4:41090924-41090943 None:intergenic 20.0%
!!! ATGTGAGTTTTAAATTTAAG+TGG + chr3_4:41091040-41091059 None:intergenic 20.0%
!! TGAAAAGAAATAAGAGTAAT+AGG + chr3_4:41092226-41092245 None:intergenic 20.0%
!!! ATTACTCTTATTTCTTTTCA+AGG - chr3_4:41092226-41092245 Msa0500590:CDS 20.0%
!! GCTTATACAATATCTATTAA+AGG - chr3_4:41092285-41092304 Msa0500590:CDS 20.0%
!! TACAATATCTATTAAAGGAT+AGG - chr3_4:41092290-41092309 Msa0500590:intron 20.0%
!! AGTATCAATTTGATTATAAG+TGG - chr3_4:41092363-41092382 Msa0500590:intron 20.0%
!! ATGTAGCATATAATCAAAAT+TGG - chr3_4:41092550-41092569 Msa0500590:intron 20.0%
!!! GTATTTTTCTATCAATTTTC+TGG - chr3_4:41092658-41092677 Msa0500590:intron 20.0%
!! ATCTAATATCACAAAATTAC+AGG + chr3_4:41092737-41092756 None:intergenic 20.0%
!! TAGATAAAGAAAAATTTGAG+TGG + chr3_4:41092974-41092993 None:intergenic 20.0%
!! ATCTAAAAATGTACTAAAAC+GGG - chr3_4:41092989-41093008 Msa0500590:intron 20.0%
!!! AATAAGTGCTTTTCTTTTAA+TGG + chr3_4:41093348-41093367 None:intergenic 20.0%
!!! TTCGTATATGAAAAAAGTAT+TGG + chr3_4:41093469-41093488 None:intergenic 20.0%
!! GATACTAATTGTAAAATACA+AGG - chr3_4:41093707-41093726 Msa0500590:intron 20.0%
!!! TTTTTTTCTTCTTTTCTTTC+TGG - chr3_4:41093959-41093978 Msa0500590:intron 20.0%
!! AGCTAAATTAACTGTTTATA+TGG - chr3_4:41094673-41094692 Msa0500590:CDS 20.0%
!! AATGCACATAATTTCAATTT+GGG + chr3_4:41095872-41095891 None:intergenic 20.0%
!!! TAATTTTTAAAGCTGTTTTC+GGG - chr3_4:41096383-41096402 Msa0500590:five_prime_UTR 20.0%
! AATTAGAACACAGAAAAACA+CGG + chr3_4:41089829-41089848 None:intergenic 25.0%
! ATGAAATTAAAGTGAGATTG+TGG + chr3_4:41089900-41089919 None:intergenic 25.0%
! TAGTTATAGATTAGTGCTAT+AGG - chr3_4:41090144-41090163 Msa0500590:three_prime_UTR 25.0%
!! CTGGAAATTGCATTTTATTA+TGG - chr3_4:41090298-41090317 Msa0500590:three_prime_UTR 25.0%
!!! GATAGATAATTTGGGTTTTA+AGG + chr3_4:41090734-41090753 None:intergenic 25.0%
!!! CCTAAAGTTGATAGATAATT+TGG + chr3_4:41090743-41090762 None:intergenic 25.0%
! CCAAATTATCTATCAACTTT+AGG - chr3_4:41090740-41090759 Msa0500590:CDS 25.0%
! AAATCAAAACTGAATGTGAA+CGG + chr3_4:41090789-41090808 None:intergenic 25.0%
! TTAAATTGTATGTACCAGTT+AGG + chr3_4:41090982-41091001 None:intergenic 25.0%
!!! TCAATTTGTCTCTTGTTTTT+GGG - chr3_4:41091005-41091024 Msa0500590:CDS 25.0%
!!! GAGTTTTAAATTTAAGTGGA+TGG + chr3_4:41091036-41091055 None:intergenic 25.0%
!! TCTCTTCAGAAATTTTTGAA+GGG + chr3_4:41091469-41091488 None:intergenic 25.0%
! TCAAACTATAATACAAGATG+AGG - chr3_4:41091721-41091740 Msa0500590:CDS 25.0%
!!! AGAGAATTAGGTTGAATATT+GGG - chr3_4:41092249-41092268 Msa0500590:CDS 25.0%
! ACGTGTCAAATTAATTATTC+TGG - chr3_4:41092588-41092607 Msa0500590:intron 25.0%
! TGTGTTACATCATATTAACT+AGG - chr3_4:41092770-41092789 Msa0500590:intron 25.0%
! TTTCATTACCTTGCTTAAAA+CGG + chr3_4:41092814-41092833 None:intergenic 25.0%
! TCTAAAAATGTACTAAAACG+GGG - chr3_4:41092990-41093009 Msa0500590:intron 25.0%
! TGTTATTAGTCATATATCCT+AGG - chr3_4:41093250-41093269 Msa0500590:intron 25.0%
!!! TAACTTATTTTTGGGTATAG+TGG + chr3_4:41093388-41093407 None:intergenic 25.0%
! ATTACCACTATTATATATCC+TGG - chr3_4:41093414-41093433 Msa0500590:intron 25.0%
! TTACCACTATTATATATCCT+GGG - chr3_4:41093415-41093434 Msa0500590:intron 25.0%
!!! TACATCTTTAAAATCAGAAC+TGG - chr3_4:41094874-41094893 Msa0500590:CDS 25.0%
! AAATAGAAGCAAAAATGAAG+TGG - chr3_4:41095276-41095295 Msa0500590:intron 25.0%
!!! TTTTTTCCATGTTTTGATTC+CGG + chr3_4:41095772-41095791 None:intergenic 25.0%
! CAATGCACATAATTTCAATT+TGG + chr3_4:41095873-41095892 None:intergenic 25.0%
!! CAATCAATATAGTGAGTTTT+GGG + chr3_4:41096256-41096275 None:intergenic 25.0%
!! TCAATCAATATAGTGAGTTT+TGG + chr3_4:41096257-41096276 None:intergenic 25.0%
!! TCACTATATTGATTGATACT+AGG - chr3_4:41096261-41096280 Msa0500590:five_prime_UTR 25.0%
TGAGATTGTGGAAAAGTAAA+AGG + chr3_4:41089888-41089907 None:intergenic 30.0%
TAATTAGGGATGAGATTAAG+CGG + chr3_4:41089972-41089991 None:intergenic 30.0%
ACCTGATTAGGAAGTAATTA+GGG + chr3_4:41089986-41090005 None:intergenic 30.0%
TTAGTGCTATAGGTTTAATC+TGG - chr3_4:41090154-41090173 Msa0500590:three_prime_UTR 30.0%
TATGTTATGGTCTTTGTTAC+TGG - chr3_4:41090279-41090298 Msa0500590:three_prime_UTR 30.0%
TTACTTGTAGTTGGAACTTA+AGG - chr3_4:41090553-41090572 Msa0500590:CDS 30.0%
TACTTGTAGTTGGAACTTAA+GGG - chr3_4:41090554-41090573 Msa0500590:CDS 30.0%
!!! AAGGTTTTAAATAGTCGTCA+CGG - chr3_4:41090613-41090632 Msa0500590:CDS 30.0%
!! CATGATTTTGTTGTGATCAT+TGG - chr3_4:41090637-41090656 Msa0500590:CDS 30.0%
ATTACTTGTGATCACAATTG+TGG - chr3_4:41090685-41090704 Msa0500590:CDS 30.0%
ATCCCTACAAAAAAAAGTCT+TGG - chr3_4:41090832-41090851 Msa0500590:CDS 30.0%
!!! GACCAAGACTTTTTTTTGTA+GGG + chr3_4:41090837-41090856 None:intergenic 30.0%
!!! AGACCAAGACTTTTTTTTGT+AGG + chr3_4:41090838-41090857 None:intergenic 30.0%
AAATTCAGACACTGAAAACT+TGG - chr3_4:41090865-41090884 Msa0500590:CDS 30.0%
AATTCAGACACTGAAAACTT+GGG - chr3_4:41090866-41090885 Msa0500590:CDS 30.0%
TTGGGAAACATCATTATTTC+AGG - chr3_4:41090884-41090903 Msa0500590:CDS 30.0%
!! TCACAAACACTACTTTTCTT+TGG + chr3_4:41090948-41090967 None:intergenic 30.0%
TGAAAAGAAAAACACCTAAC+TGG - chr3_4:41090965-41090984 Msa0500590:CDS 30.0%
!!! CTCAATTTGTCTCTTGTTTT+TGG - chr3_4:41091004-41091023 Msa0500590:CDS 30.0%
!! CTCTTCAGAAATTTTTGAAG+GGG + chr3_4:41091468-41091487 None:intergenic 30.0%
! GTCTCTTCAGAAATTTTTGA+AGG + chr3_4:41091470-41091489 None:intergenic 30.0%
AATCTTCAACCAAATTTAGC+TGG + chr3_4:41091811-41091830 None:intergenic 30.0%
!! CAAATCTTTTGTTTCAGAAG+AGG + chr3_4:41091930-41091949 None:intergenic 30.0%
AATGAAGTAAAGATGTCTTC+TGG - chr3_4:41091962-41091981 Msa0500590:CDS 30.0%
!! TTCTTTTCAAGGAGAGAATT+AGG - chr3_4:41092237-41092256 Msa0500590:CDS 30.0%
!! GAGAGAATTAGGTTGAATAT+TGG - chr3_4:41092248-41092267 Msa0500590:CDS 30.0%
!! GAGAATTAGGTTGAATATTG+GGG - chr3_4:41092250-41092269 Msa0500590:CDS 30.0%
TTAGGCCTATAATATGACTT+TGG + chr3_4:41092460-41092479 None:intergenic 30.0%
! CATGCAAGTAATGTGTTATT+AGG + chr3_4:41092478-41092497 None:intergenic 30.0%
TTAAGCAAGGTAATGAAAAC+CGG - chr3_4:41092816-41092835 Msa0500590:intron 30.0%
AAACCATTCTGTTGTTAAAC+CGG - chr3_4:41092891-41092910 Msa0500590:intron 30.0%
TTCTTTAACAAGAGAAAGAG+CGG - chr3_4:41093072-41093091 Msa0500590:intron 30.0%
GGTATTAACAAAAAGACACT+TGG - chr3_4:41093151-41093170 Msa0500590:intron 30.0%
ATAATCTTAAGTGTCCTTCT+AGG + chr3_4:41093321-41093340 None:intergenic 30.0%
TATTATATATCCTGGGAAGT+TGG - chr3_4:41093422-41093441 Msa0500590:intron 30.0%
AAAACCAAGGTAATCAAAAC+TGG + chr3_4:41093657-41093676 None:intergenic 30.0%
ACGTTTAACACTTAAAACCA+AGG + chr3_4:41093670-41093689 None:intergenic 30.0%
ACAAGGAAACTATGATTGTA+TGG - chr3_4:41093724-41093743 Msa0500590:intron 30.0%
AAACCATAAACAGTTTCCTT+GGG + chr3_4:41093755-41093774 None:intergenic 30.0%
AAAACCATAAACAGTTTCCT+TGG + chr3_4:41093756-41093775 None:intergenic 30.0%
AGATACTTTGCATCTCAATA+TGG - chr3_4:41093827-41093846 Msa0500590:intron 30.0%
!! GAACGTTTTATTACATCAGT+AGG + chr3_4:41093855-41093874 None:intergenic 30.0%
! TTTTCTTTCTGGATATACAG+AGG - chr3_4:41093970-41093989 Msa0500590:intron 30.0%
GACGAAAAATCAAGTACTAA+AGG - chr3_4:41094073-41094092 Msa0500590:intron 30.0%
TAACTCTTCTATAAGTCTCT+TGG + chr3_4:41094111-41094130 None:intergenic 30.0%
AGATCAAGATTCACTCAATT+GGG - chr3_4:41094535-41094554 Msa0500590:CDS 30.0%
AAAGGATCTCAAATCTAAAC+TGG - chr3_4:41094619-41094638 Msa0500590:CDS 30.0%
GAATCAAAGTTAAAGCAAGA+AGG - chr3_4:41094695-41094714 Msa0500590:CDS 30.0%
!! AATAGCTTTGGTTCAAATGA+AGG - chr3_4:41094997-41095016 Msa0500590:CDS 30.0%
!! AGGAAGCAAATAATTTTGAC+CGG - chr3_4:41095662-41095681 Msa0500590:intron 30.0%
AAAACACATTCAAACAAGTC+AGG - chr3_4:41095841-41095860 Msa0500590:intron 30.0%
AAACACATTCAAACAAGTCA+GGG - chr3_4:41095842-41095861 Msa0500590:intron 30.0%
ATTGGATTATACTCACTTGA+TGG - chr3_4:41096010-41096029 Msa0500590:intron 30.0%
TTGTGAGGACTTAAGAAAAT+AGG - chr3_4:41096060-41096079 Msa0500590:intron 30.0%
AAAATAGGTTCGTCTATGTT+GGG - chr3_4:41096075-41096094 Msa0500590:intron 30.0%
TCTTCAGATATATTGAACCT+CGG - chr3_4:41096134-41096153 Msa0500590:intron 30.0%
! ACTAGGAAGAATTTTCTCAA+TGG - chr3_4:41096278-41096297 Msa0500590:five_prime_UTR 30.0%
! CTAGGAAGAATTTTCTCAAT+GGG - chr3_4:41096279-41096298 Msa0500590:five_prime_UTR 30.0%
TGCATGGAATATACACATAA+AGG - chr3_4:41096337-41096356 Msa0500590:five_prime_UTR 30.0%
GATTGTGGAAAAGTAAAAGG+AGG + chr3_4:41089885-41089904 None:intergenic 35.0%
TCCCTAATTACTTCCTAATC+AGG - chr3_4:41089982-41090001 Msa0500590:three_prime_UTR 35.0%
CACCTGATTAGGAAGTAATT+AGG + chr3_4:41089987-41090006 None:intergenic 35.0%
AATACACGAGTGAAAGGAAA+CGG + chr3_4:41090081-41090100 None:intergenic 35.0%
! GTGTATTTTCCGAACATCAA+CGG - chr3_4:41090094-41090113 Msa0500590:three_prime_UTR 35.0%
!! AAGGTGTTTTGTCTACGAAA+AGG - chr3_4:41090120-41090139 Msa0500590:three_prime_UTR 35.0%
TGCAGTTACTTACTTGTAGT+TGG - chr3_4:41090544-41090563 Msa0500590:CDS 35.0%
ACTTGTAGTTGGAACTTAAG+GGG - chr3_4:41090555-41090574 Msa0500590:CDS 35.0%
AACTGAATGTGAACGGTTAA+TGG + chr3_4:41090782-41090801 None:intergenic 35.0%
! TTTTCAGTGTCTGAATTTGC+AGG + chr3_4:41090863-41090882 None:intergenic 35.0%
AACATCCTCCATTATAAGGA+GGG + chr3_4:41091219-41091238 None:intergenic 35.0%
CTTGAACATCCTCCATTATA+AGG + chr3_4:41091223-41091242 None:intergenic 35.0%
! ATTTTTGTAGAGGAGTCAGA+GGG + chr3_4:41091254-41091273 None:intergenic 35.0%
! AATTTTTGTAGAGGAGTCAG+AGG + chr3_4:41091255-41091274 None:intergenic 35.0%
! CTCTTCAGCAATTTTTGTAG+AGG + chr3_4:41091264-41091283 None:intergenic 35.0%
TCTTCAATATGTTCTGCTAG+TGG + chr3_4:41091290-41091309 None:intergenic 35.0%
!! ACTTTTGAAGAGGATTCAGA+GGG + chr3_4:41091320-41091339 None:intergenic 35.0%
!! AACTTTTGAAGAGGATTCAG+AGG + chr3_4:41091321-41091340 None:intergenic 35.0%
!! CTCTTCAGTAACTTTTGAAG+AGG + chr3_4:41091330-41091349 None:intergenic 35.0%
!! CTCTTCAGTAACTTTTGAAG+AGG + chr3_4:41091330-41091349 None:intergenic 35.0%
AGTTACTGAAGAGACACATA+TGG - chr3_4:41091409-41091428 Msa0500590:CDS 35.0%
!! ATTTTTGAAGGGGATTCAGA+TGG + chr3_4:41091458-41091477 None:intergenic 35.0%
AGGAAGATTGATTATGTGGT+GGG + chr3_4:41091598-41091617 None:intergenic 35.0%
TCTGAGGAAGATTGATTATG+TGG + chr3_4:41091602-41091621 None:intergenic 35.0%
CTTCCAATTCCACTTAGTAA+CGG - chr3_4:41091623-41091642 Msa0500590:CDS 35.0%
TTGGCAACACTGATAATTCA+GGG + chr3_4:41091688-41091707 None:intergenic 35.0%
TTTGGCAACACTGATAATTC+AGG + chr3_4:41091689-41091708 None:intergenic 35.0%
GTTTGACCATCAGAAACATT+TGG + chr3_4:41091707-41091726 None:intergenic 35.0%
TTCAGTTCCAAATGATACAG+TGG - chr3_4:41091766-41091785 Msa0500590:CDS 35.0%
TTGGTTGAAGATTCTAAACC+AGG - chr3_4:41091818-41091837 Msa0500590:CDS 35.0%
! TCTTTTTACATCAACCTGCT+TGG + chr3_4:41092011-41092030 None:intergenic 35.0%
!! AAGCAGGTTGATGTAAAAAG+AGG - chr3_4:41092010-41092029 Msa0500590:CDS 35.0%
!! AAGGAAGCTGTTTCTAAGTT+TGG - chr3_4:41092067-41092086 Msa0500590:CDS 35.0%
! TTATGCAAGAAGTGTGAAGA+AGG + chr3_4:41092193-41092212 None:intergenic 35.0%
TCTATTAAAGGATAGGCAAG+AGG - chr3_4:41092297-41092316 Msa0500590:intron 35.0%
CAAGAGGCAAATGTTGTTAT+GGG - chr3_4:41092313-41092332 Msa0500590:intron 35.0%
AAGAGGCAAATGTTGTTATG+GGG - chr3_4:41092314-41092333 Msa0500590:intron 35.0%
GCCAACCAAAGTCATATTAT+AGG - chr3_4:41092452-41092471 Msa0500590:intron 35.0%
GCCTATAATATGACTTTGGT+TGG + chr3_4:41092456-41092475 None:intergenic 35.0%
AACCATTCTGTTGTTAAACC+GGG - chr3_4:41092892-41092911 Msa0500590:intron 35.0%
! GTTCTGCGTTTTCTTCTTAA+AGG - chr3_4:41093035-41093054 Msa0500590:intron 35.0%
TCTTTAACAAGAGAAAGAGC+GGG - chr3_4:41093073-41093092 Msa0500590:intron 35.0%
CTTCCCAGGATATATAATAG+TGG + chr3_4:41093421-41093440 None:intergenic 35.0%
AGAGAAGACATGTGAGAAAA+CGG - chr3_4:41093561-41093580 Msa0500590:intron 35.0%
! TGATTGTATGGTTTTTCCCA+AGG - chr3_4:41093736-41093755 Msa0500590:intron 35.0%
TTTCCCAAGGAAACTGTTTA+TGG - chr3_4:41093749-41093768 Msa0500590:intron 35.0%
TCAAAATGCATTGTAAGGCA+AGG + chr3_4:41093780-41093799 None:intergenic 35.0%
GCAGTTCAAAATGCATTGTA+AGG + chr3_4:41093785-41093804 None:intergenic 35.0%
! TACCTTGCTTGATTTTCTGT+TGG - chr3_4:41093917-41093936 Msa0500590:intron 35.0%
!! TCTGCTTGTTTTCTGTATTC+TGG + chr3_4:41094041-41094060 None:intergenic 35.0%
ATACAGAAAACAAGCAGAGA+CGG - chr3_4:41094043-41094062 Msa0500590:intron 35.0%
AAATCAAGTACTAAAGGAGC+TGG - chr3_4:41094079-41094098 Msa0500590:intron 35.0%
AGTTGCTAAAGCTAGGTATA+CGG - chr3_4:41094265-41094284 Msa0500590:CDS 35.0%
TTCATCTCTATCAGTCACTA+AGG + chr3_4:41094354-41094373 None:intergenic 35.0%
! AGTCTCTAATGACTCTTTTG+TGG + chr3_4:41094459-41094478 None:intergenic 35.0%
ACAAAGAATAGGAACAGTCA+TGG - chr3_4:41094508-41094527 Msa0500590:CDS 35.0%
GAGATCAAGATTCACTCAAT+TGG - chr3_4:41094534-41094553 Msa0500590:CDS 35.0%
!! ACATTTGCTCATTGATTCTC+TGG + chr3_4:41094592-41094611 None:intergenic 35.0%
!!! TCTTCTTTTCTGGTTCTTCT+TGG + chr3_4:41094745-41094764 None:intergenic 35.0%
GACTAGATCAGAAATAGCTT+TGG - chr3_4:41094985-41095004 Msa0500590:CDS 35.0%
AAGTTCGGTCATTTGTTCTT+TGG + chr3_4:41095032-41095051 None:intergenic 35.0%
TGAAGAACTGCAGAAAGTAA+AGG - chr3_4:41095117-41095136 Msa0500590:intron 35.0%
! TTTTTCCATTGCCATCTTCA+AGG + chr3_4:41095494-41095513 None:intergenic 35.0%
AAGGCAAAGGAAGGTAAATT+AGG - chr3_4:41095520-41095539 Msa0500590:intron 35.0%
GTGTAGAACAAGAACTTAGA+AGG - chr3_4:41095542-41095561 Msa0500590:intron 35.0%
TAGAACAAGAACTTAGAAGG+TGG - chr3_4:41095545-41095564 Msa0500590:intron 35.0%
TCTGCATGCATATAAGTCTT+CGG + chr3_4:41095727-41095746 None:intergenic 35.0%
ATGCATGCAGAAAAAGATGA+AGG - chr3_4:41095736-41095755 Msa0500590:intron 35.0%
TTTGTGTATGGTTTGACGAT+TGG - chr3_4:41095992-41096011 Msa0500590:intron 35.0%
GATTATACTCACTTGATGGA+TGG - chr3_4:41096014-41096033 Msa0500590:intron 35.0%
GAAAATAGGTTCGTCTATGT+TGG - chr3_4:41096074-41096093 Msa0500590:intron 35.0%
AGTGCTTCAAATCACAAACA+TGG + chr3_4:41096211-41096230 None:intergenic 35.0%
! GTGATTTGAAGCACTTTGAA+TGG - chr3_4:41096216-41096235 Msa0500590:five_prime_UTR 35.0%
ACAACTAGTGAACTGTGAAT+GGG + chr3_4:41096306-41096325 None:intergenic 35.0%
TGTATATTCCATGCATCAGA+AGG + chr3_4:41096332-41096351 None:intergenic 35.0%
!!! TTTTAAAGCTGTTTTCGGGA+AGG - chr3_4:41096387-41096406 Msa0500590:five_prime_UTR 35.0%
ATCATCAAATGATCCAGAAC+AGG + chr3_4:41096415-41096434 None:intergenic 35.0%
AACACAGAAAAACACGGAAG+TGG + chr3_4:41089823-41089842 None:intergenic 40.0%
TGTGGAAAAGTAAAAGGAGG+TGG + chr3_4:41089882-41089901 None:intergenic 40.0%
ACTTCGCAAAACACCTGATT+AGG + chr3_4:41089998-41090017 None:intergenic 40.0%
TCGGAAAATACACGAGTGAA+AGG + chr3_4:41090087-41090106 None:intergenic 40.0%
AATGTGTCAGTGTCGTGTTA+GGG - chr3_4:41090431-41090450 Msa0500590:CDS 40.0%
GAGATCTCTGCATTTGTCAA+AGG - chr3_4:41090594-41090613 Msa0500590:CDS 40.0%
ATTTCAAGGTGTAAGCTCGA+TGG + chr3_4:41090910-41090929 None:intergenic 40.0%
GAACATCCTCCATTATAAGG+AGG + chr3_4:41091220-41091239 None:intergenic 40.0%
TCTTCAACATGTTCTGCTAG+TGG + chr3_4:41091356-41091375 None:intergenic 40.0%
GAAGAGGATTCAGAATCAGA+GGG + chr3_4:41091386-41091405 None:intergenic 40.0%
TGAAGAGGATTCAGAATCAG+AGG + chr3_4:41091387-41091406 None:intergenic 40.0%
AGTTACTGAGACACAACTGA+TGG - chr3_4:41091541-41091560 Msa0500590:CDS 40.0%
! CACTTCGGTATTTTCTTCAG+AGG + chr3_4:41091570-41091589 None:intergenic 40.0%
! CTCTGAAGAAAATACCGAAG+TGG - chr3_4:41091568-41091587 Msa0500590:CDS 40.0%
GAGGAAGATTGATTATGTGG+TGG + chr3_4:41091599-41091618 None:intergenic 40.0%
AAGTGGAATTGGAAGTTCTG+AGG + chr3_4:41091618-41091637 None:intergenic 40.0%
TCTCCGTTACTAAGTGGAAT+TGG + chr3_4:41091629-41091648 None:intergenic 40.0%
! GTGTTGCCAAATGTTTCTGA+TGG - chr3_4:41091698-41091717 Msa0500590:CDS 40.0%
GTCACATCCACTGTATCATT+TGG + chr3_4:41091776-41091795 None:intergenic 40.0%
AACAAGCGACCAGCTAAATT+TGG - chr3_4:41091799-41091818 Msa0500590:CDS 40.0%
TACATCAACCTGCTTGGTTT+GGG + chr3_4:41092005-41092024 None:intergenic 40.0%
TTACATCAACCTGCTTGGTT+TGG + chr3_4:41092006-41092025 None:intergenic 40.0%
!! GAAGCTGTTTCTAAGTTTGG+AGG - chr3_4:41092070-41092089 Msa0500590:CDS 40.0%
AGTTTGGAGGAATTGTCGAT+TGG - chr3_4:41092083-41092102 Msa0500590:CDS 40.0%
ACATATATACCTCCACAGTC+TGG + chr3_4:41092123-41092142 None:intergenic 40.0%
GCAAGAGGCAAATGTTGTTA+TGG - chr3_4:41092312-41092331 Msa0500590:intron 40.0%
!! GCTATGATCCGTTTTAAGCA+AGG - chr3_4:41092803-41092822 Msa0500590:intron 40.0%
CAAGGTAATGAAAACCGGAT+CGG - chr3_4:41092821-41092840 Msa0500590:intron 40.0%
AATTTGAGTGGTCCAACCTA+TGG + chr3_4:41092962-41092981 None:intergenic 40.0%
CTTTAACAAGAGAAAGAGCG+GGG - chr3_4:41093074-41093093 Msa0500590:intron 40.0%
! TGAAAGCATACACTGGAGAA+GGG - chr3_4:41093105-41093124 Msa0500590:intron 40.0%
TTGGAGAATAAGATGTGCAC+AGG - chr3_4:41093170-41093189 Msa0500590:intron 40.0%
TACTACTAGTCGAACTTCCT+AGG + chr3_4:41093270-41093289 None:intergenic 40.0%
AATTAGTCATGAGACCCTAG+TGG - chr3_4:41093289-41093308 Msa0500590:intron 40.0%
AAATCATAGTCCAACTTCCC+AGG + chr3_4:41093435-41093454 None:intergenic 40.0%
! GGGAAGTTGGACTATGATTT+TGG - chr3_4:41093435-41093454 Msa0500590:intron 40.0%
CAAGGTAATCAAAACTGGAC+CGG + chr3_4:41093652-41093671 None:intergenic 40.0%
CTCCAACAGAAAATCAAGCA+AGG + chr3_4:41093922-41093941 None:intergenic 40.0%
AACTGGAAGTTGCTAAAGCT+AGG - chr3_4:41094258-41094277 Msa0500590:CDS 40.0%
TGAAGCTATTAAGAAAGCCG+AGG - chr3_4:41094370-41094389 Msa0500590:CDS 40.0%
GAAGCAGAGGAACAAAGAAT+AGG - chr3_4:41094497-41094516 Msa0500590:CDS 40.0%
AGATTCACTCAATTGGGAGA+AGG - chr3_4:41094541-41094560 Msa0500590:CDS 40.0%
TTGGGAGAAGGAACTTAAAC+AGG - chr3_4:41094553-41094572 Msa0500590:CDS 40.0%
TGAGCAAATGTTGTCTGCAA+AGG - chr3_4:41094601-41094620 Msa0500590:CDS 40.0%
! TCTGTGTGTGTCTTCTTTTC+TGG + chr3_4:41094755-41094774 None:intergenic 40.0%
CATAGAGAAAGCAAATGCTG+AGG - chr3_4:41094829-41094848 Msa0500590:CDS 40.0%
AATCATCTCTTGCCTCGATT+AGG - chr3_4:41094906-41094925 Msa0500590:CDS 40.0%
! TTCTAGAGATGCAACTGCAA+TGG + chr3_4:41094951-41094970 None:intergenic 40.0%
! TGCATCTCTAGAAGCTGAAT+TGG - chr3_4:41094958-41094977 Msa0500590:CDS 40.0%
! TTGCAGCTTCTTTGGAAGTT+CGG + chr3_4:41095047-41095066 None:intergenic 40.0%
! TGCAAAGGCTTCTGAAAAGT+TGG - chr3_4:41095216-41095235 Msa0500590:intron 40.0%
!! AGCTGCTAATTCTGAAGTTG+AGG - chr3_4:41095393-41095412 Msa0500590:intron 40.0%
!! TTCTGAAGTTGAGGTAGCTA+AGG - chr3_4:41095402-41095421 Msa0500590:intron 40.0%
ACTGAAATCCTTCGAGAAGT+TGG - chr3_4:41095432-41095451 Msa0500590:intron 40.0%
ATAGAGAGATAGCTGCTAGA+AGG - chr3_4:41095464-41095483 Msa0500590:intron 40.0%
TAGAGAGATAGCTGCTAGAA+GGG - chr3_4:41095465-41095484 Msa0500590:intron 40.0%
TAGAAGGGAATCCTTGAAGA+TGG - chr3_4:41095480-41095499 Msa0500590:intron 40.0%
TGAAAATGAGCAACGGAGAA+AGG - chr3_4:41095573-41095592 Msa0500590:intron 40.0%
! TATTCTGGTTAACCACTCCT+TGG + chr3_4:41095612-41095631 None:intergenic 40.0%
TTAACCAGAATAAAAGCCCC+AGG - chr3_4:41095620-41095639 Msa0500590:intron 40.0%
TAACCAGAATAAAAGCCCCA+GGG - chr3_4:41095621-41095640 Msa0500590:intron 40.0%
!! TGCAGGATTAGTTGCATACT+GGG + chr3_4:41095689-41095708 None:intergenic 40.0%
GGACTTGACAAATATTGTGC+AGG + chr3_4:41095706-41095725 None:intergenic 40.0%
CATGCAGAAAAAGATGAAGG+TGG - chr3_4:41095739-41095758 Msa0500590:intron 40.0%
TCATCACCGGAATCAAAACA+TGG - chr3_4:41095763-41095782 Msa0500590:intron 40.0%
AGAAGAAATCGTTGTTCCCA+CGG - chr3_4:41095794-41095813 Msa0500590:intron 40.0%
CAAAGAACATCATAACCCGT+GGG + chr3_4:41095813-41095832 None:intergenic 40.0%
ACTCAGATCTCCAAAAGGAT+GGG + chr3_4:41095918-41095937 None:intergenic 40.0%
ATCTGAGTGACTCGAAATGT+TGG - chr3_4:41095930-41095949 Msa0500590:intron 40.0%
! CTCACTTGATGGATGGTATA+CGG - chr3_4:41096021-41096040 Msa0500590:intron 40.0%
ACAAATCTTTACACAAGCCG+AGG + chr3_4:41096154-41096173 None:intergenic 40.0%
CACAACTAGTGAACTGTGAA+TGG + chr3_4:41096307-41096326 None:intergenic 40.0%
CATTCACAGTTCACTAGTTG+TGG - chr3_4:41096305-41096324 Msa0500590:five_prime_UTR 40.0%
TTCCGAACATCAACGGTTGA+AGG - chr3_4:41090101-41090120 Msa0500590:three_prime_UTR 45.0%
CACCTTCAACCGTTGATGTT+CGG + chr3_4:41090106-41090125 None:intergenic 45.0%
AGCACAATACTTATCCGCAC+CGG - chr3_4:41090343-41090362 Msa0500590:three_prime_UTR 45.0%
CAATGTGTCAGTGTCGTGTT+AGG - chr3_4:41090430-41090449 Msa0500590:CDS 45.0%
TCACAATTGTGGTTGCGATG+TGG - chr3_4:41090696-41090715 Msa0500590:CDS 45.0%
! AATTTCTGAAGAGACGCCAC+TGG - chr3_4:41091475-41091494 Msa0500590:CDS 45.0%
TCTTCAACATGTTCTGCCAG+TGG + chr3_4:41091494-41091513 None:intergenic 45.0%
!! ATGTGGTGGGTTTACCACTT+CGG + chr3_4:41091585-41091604 None:intergenic 45.0%
! TCCACTTAGTAACGGAGAAG+TGG - chr3_4:41091631-41091650 Msa0500590:CDS 45.0%
TCCACTTCTCCGTTACTAAG+TGG + chr3_4:41091635-41091654 None:intergenic 45.0%
TGCTGGTCAGAGATATCTTC+TGG + chr3_4:41091848-41091867 None:intergenic 45.0%
CATCAACCTGCAATTCATGC+TGG + chr3_4:41091865-41091884 None:intergenic 45.0%
ACCTCCATTCGAATCTGTCA+AGG - chr3_4:41092048-41092067 Msa0500590:CDS 45.0%
TCCTTGACAGATTCGAATGG+AGG + chr3_4:41092052-41092071 None:intergenic 45.0%
GCTTCCTTGACAGATTCGAA+TGG + chr3_4:41092055-41092074 None:intergenic 45.0%
! TGGAGGAATTGTCGATTGGA+AGG - chr3_4:41092087-41092106 Msa0500590:CDS 45.0%
GTACCAAACAGACCAGACAT+AGG + chr3_4:41092868-41092887 None:intergenic 45.0%
TGCCCGGTTTAACAACAGAA+TGG + chr3_4:41092897-41092916 None:intergenic 45.0%
!! CCACTTTTGCACGGTTTTAG+CGG + chr3_4:41092925-41092944 None:intergenic 45.0%
CTAAAACCGTGCAAAAGTGG+CGG - chr3_4:41092925-41092944 Msa0500590:intron 45.0%
! GGATGAGTGAAAGCATACAC+TGG - chr3_4:41093098-41093117 Msa0500590:intron 45.0%
! GTGAAAGCATACACTGGAGA+AGG - chr3_4:41093104-41093123 Msa0500590:intron 45.0%
! CTTCTAGGTTCTAGCCACTA+GGG + chr3_4:41093306-41093325 None:intergenic 45.0%
CAAGGTTCAAAGGTTGGACA+GGG + chr3_4:41093603-41093622 None:intergenic 45.0%
TCAAGGTTCAAAGGTTGGAC+AGG + chr3_4:41093604-41093623 None:intergenic 45.0%
ACATTGAACCAGTGTAGGCA+CGG + chr3_4:41093629-41093648 None:intergenic 45.0%
!!! CGGTCCAGTTTTGATTACCT+TGG - chr3_4:41093650-41093669 Msa0500590:intron 45.0%
! TTTTGCTTCCTGCTGTACTG+AGG - chr3_4:41093876-41093895 Msa0500590:intron 45.0%
CAATTGATCCTCAGTACAGC+AGG + chr3_4:41093887-41093906 None:intergenic 45.0%
CTTCAGTTTGTGCTCTCTCT+AGG + chr3_4:41094142-41094161 None:intergenic 45.0%
AGCACAAACTGAAGAGCAAC+AGG - chr3_4:41094148-41094167 Msa0500590:intron 45.0%
AAAGCTCAGAGTGGAAGAGA+TGG - chr3_4:41094193-41094212 Msa0500590:CDS 45.0%
AGCTATTAAGAAAGCCGAGG+AGG - chr3_4:41094373-41094392 Msa0500590:CDS 45.0%
!! CACTGACTTCTCTACTTCCT+TGG + chr3_4:41094411-41094430 None:intergenic 45.0%
CAAGGAAGTAGAGAAGTCAG+TGG - chr3_4:41094409-41094428 Msa0500590:CDS 45.0%
CAAATCAAGCAGCAAACCAG+AGG + chr3_4:41094651-41094670 None:intergenic 45.0%
!! TTCCTTTCTGGCTGATTCCA+CGG + chr3_4:41094789-41094808 None:intergenic 45.0%
ATCAGCCAGAAAGGAACTTG+AGG - chr3_4:41094793-41094812 Msa0500590:CDS 45.0%
TACCTCCTCAAGTTCCTTTC+TGG + chr3_4:41094801-41094820 None:intergenic 45.0%
GATTAGGCAAAGAGAGGGAA+TGG - chr3_4:41094922-41094941 Msa0500590:CDS 45.0%
TAGAGATGCAACTGCAATGG+AGG + chr3_4:41094948-41094967 None:intergenic 45.0%
GCTGTTAGTTGCAGCTTCTT+TGG + chr3_4:41095055-41095074 None:intergenic 45.0%
AACAGCTGAAGAGGCTAATC+AGG - chr3_4:41095069-41095088 Msa0500590:five_prime_UTR 45.0%
GAGTAAGTACCTTGGAAAGC+AGG - chr3_4:41095164-41095183 Msa0500590:intron 45.0%
TGCAAGTAACCTGCTTTCCA+AGG + chr3_4:41095176-41095195 None:intergenic 45.0%
CAGGTTACTTGCAGCTCAAA+AGG - chr3_4:41095183-41095202 Msa0500590:intron 45.0%
TGCAGCTCAAAAGGAGATAG+AGG - chr3_4:41095192-41095211 Msa0500590:intron 45.0%
AAAGGAGATAGAGGCTGCAA+AGG - chr3_4:41095201-41095220 Msa0500590:intron 45.0%
! CAAAGAAAGTGTAACCCCAC+TGG + chr3_4:41095308-41095327 None:intergenic 45.0%
CAGTGGGGTTACACTTTCTT+TGG - chr3_4:41095306-41095325 Msa0500590:intron 45.0%
AGCAGCTGCAATCCTTGTAT+TGG + chr3_4:41095380-41095399 None:intergenic 45.0%
CACTTCATCCAACTTCTCGA+AGG + chr3_4:41095443-41095462 None:intergenic 45.0%
GGAATCCTTGAAGATGGCAA+TGG - chr3_4:41095486-41095505 Msa0500590:intron 45.0%
GGCAATGGAAAAAGCTGAGA+AGG - chr3_4:41095501-41095520 Msa0500590:intron 45.0%
GGAAAAAGCTGAGAAGGCAA+AGG - chr3_4:41095507-41095526 Msa0500590:intron 45.0%
AAAGCTGAGAAGGCAAAGGA+AGG - chr3_4:41095511-41095530 Msa0500590:intron 45.0%
GGAGAGCTGAAAATGAGCAA+CGG - chr3_4:41095566-41095585 Msa0500590:intron 45.0%
! GATTAGTTGCATACTGGGAC+CGG + chr3_4:41095684-41095703 None:intergenic 45.0%
!! GTGCAGGATTAGTTGCATAC+TGG + chr3_4:41095690-41095709 None:intergenic 45.0%
AGATGAAGGTGGATCATCAC+CGG - chr3_4:41095750-41095769 Msa0500590:intron 45.0%
GAAGAAATCGTTGTTCCCAC+GGG - chr3_4:41095795-41095814 Msa0500590:intron 45.0%
GCAAAGAACATCATAACCCG+TGG + chr3_4:41095814-41095833 None:intergenic 45.0%
! TATCTTGCCTCCCATCCTTT+TGG - chr3_4:41095905-41095924 Msa0500590:intron 45.0%
CACTCAGATCTCCAAAAGGA+TGG + chr3_4:41095919-41095938 None:intergenic 45.0%
GAGTCACTCAGATCTCCAAA+AGG + chr3_4:41095923-41095942 None:intergenic 45.0%
! TACTGGCACAGTACAGCTTT+TGG + chr3_4:41095960-41095979 None:intergenic 45.0%
ACAAATCGATCACCGTGTAC+TGG + chr3_4:41095977-41095996 None:intergenic 45.0%
!! CACGGTGATCGATTTGTGTA+TGG - chr3_4:41095980-41095999 Msa0500590:intron 45.0%
! TTCCTGCTCAGTGTTTTGTG+AGG - chr3_4:41096045-41096064 Msa0500590:intron 45.0%
! CACATGTGTGAGTATCGTGC+CGG + chr3_4:41090377-41090396 None:intergenic 50.0%
CTCCATTATAAGGAGGGCTC+GGG + chr3_4:41091213-41091232 None:intergenic 50.0%
CCTCCATTATAAGGAGGGCT+CGG + chr3_4:41091214-41091233 None:intergenic 50.0%
! AGTAACGGAGAAGTGGAGTC+TGG - chr3_4:41091638-41091657 Msa0500590:CDS 50.0%
!! GAGATATCTTCTGGAGCACC+TGG + chr3_4:41091839-41091858 None:intergenic 50.0%
CTCTGACCAGCATGAATTGC+AGG - chr3_4:41091856-41091875 Msa0500590:CDS 50.0%
!! ATCAACCTGCTTGGTTTGGG+CGG + chr3_4:41092002-41092021 None:intergenic 50.0%
GACAGATTCGAATGGAGGTG+TGG + chr3_4:41092047-41092066 None:intergenic 50.0%
TCATCGAATCCAGACTGTGG+AGG - chr3_4:41092111-41092130 Msa0500590:CDS 50.0%
GTAATGAAAACCGGATCGGC+CGG - chr3_4:41092825-41092844 Msa0500590:intron 50.0%
GGACCTATGTCTGGTCTGTT+TGG - chr3_4:41092862-41092881 Msa0500590:intron 50.0%
!! GGTTTTAGCGGTTTACTGCC+CGG + chr3_4:41092913-41092932 None:intergenic 50.0%
CCGCTAAAACCGTGCAAAAG+TGG - chr3_4:41092922-41092941 Msa0500590:intron 50.0%
AGTGGTCCAACCTATGGATC+CGG + chr3_4:41092956-41092975 None:intergenic 50.0%
!!! AACGGGGCTTTTGAAGCTTC+CGG - chr3_4:41093006-41093025 Msa0500590:intron 50.0%
GAAAACGCAGAACAAGCTGC+CGG + chr3_4:41093028-41093047 None:intergenic 50.0%
TAACAAGAGAAAGAGCGGGG+AGG - chr3_4:41093077-41093096 Msa0500590:intron 50.0%
ACTGGAGAAGGGAGAAGAAG+AGG - chr3_4:41093116-41093135 Msa0500590:intron 50.0%
GAGAAGGGAGAAGAAGAGGA+GGG - chr3_4:41093120-41093139 Msa0500590:intron 50.0%
AAGAAGAGGAGGGTAGACGT+GGG - chr3_4:41093130-41093149 Msa0500590:intron 50.0%
! CCTTCTAGGTTCTAGCCACT+AGG + chr3_4:41093307-41093326 None:intergenic 50.0%
CCTAGTGGCTAGAACCTAGA+AGG - chr3_4:41093304-41093323 Msa0500590:intron 50.0%
CGGGTTCAAGGTTCAAAGGT+TGG + chr3_4:41093609-41093628 None:intergenic 50.0%
CATTGAACCAGTGTAGGCAC+GGG + chr3_4:41093628-41093647 None:intergenic 50.0%
!! GCCTACACTGGTTCAATGTC+CGG - chr3_4:41093630-41093649 Msa0500590:intron 50.0%
ACCGGACATTGAACCAGTGT+AGG + chr3_4:41093634-41093653 None:intergenic 50.0%
GAGGCGCAATCTAGTAGAAC+AGG - chr3_4:41093989-41094008 Msa0500590:intron 50.0%
TGAAGAGCAACAGGCAAGAC+AGG - chr3_4:41094157-41094176 Msa0500590:intron 50.0%
GGAACTTGCAAAGCTCAGAG+TGG - chr3_4:41094184-41094203 Msa0500590:CDS 50.0%
AGAGTGGAAGAGATGGAGCA+AGG - chr3_4:41094200-41094219 Msa0500590:CDS 50.0%
AGCAACTTCCAGTTGTGCCT+TGG + chr3_4:41094252-41094271 None:intergenic 50.0%
AGCAGCTGTGAAAGAAGAGC+TGG - chr3_4:41094304-41094323 Msa0500590:CDS 50.0%
AGAGCTGGATGCATTGCGTA+AGG - chr3_4:41094319-41094338 Msa0500590:CDS 50.0%
TCTAAACTGGAAGCAGCCTC+TGG - chr3_4:41094632-41094651 Msa0500590:CDS 50.0%
! GGTGATGATGAACTCTCGCA+AGG - chr3_4:41094716-41094735 Msa0500590:CDS 50.0%
GATGATGAACTCTCGCAAGG+AGG - chr3_4:41094719-41094738 Msa0500590:CDS 50.0%
CACAGATATACAAGCAGCCG+TGG - chr3_4:41094769-41094788 Msa0500590:CDS 50.0%
AGCCAGAAAGGAACTTGAGG+AGG - chr3_4:41094796-41094815 Msa0500590:CDS 50.0%
TGCCTCGATTAGGCAAAGAG+AGG - chr3_4:41094916-41094935 Msa0500590:CDS 50.0%
GCCTCGATTAGGCAAAGAGA+GGG - chr3_4:41094917-41094936 Msa0500590:CDS 50.0%
TCCCTCTCTTTGCCTAATCG+AGG + chr3_4:41094921-41094940 None:intergenic 50.0%
GCTGCAACTAACAGCTGAAG+AGG - chr3_4:41095060-41095079 Msa0500590:exon 50.0%
AGCTGCTTGAGCAAGCAAGT+TGG + chr3_4:41095095-41095114 None:intergenic 50.0%
! CAAGGTACTTACTCCAGCCT+TGG + chr3_4:41095158-41095177 None:intergenic 50.0%
CAAGGCTGGAGTAAGTACCT+TGG - chr3_4:41095156-41095175 Msa0500590:intron 50.0%
AAAGTGTAACCCCACTGGAC+GGG + chr3_4:41095303-41095322 None:intergenic 50.0%
! GAAAGTGTAACCCCACTGGA+CGG + chr3_4:41095304-41095323 None:intergenic 50.0%
CAGAAGAGCGAGCCAATACA+AGG - chr3_4:41095365-41095384 Msa0500590:intron 50.0%
AATGAGCAACGGAGAAAGGC+TGG - chr3_4:41095577-41095596 Msa0500590:intron 50.0%
! TAGCCCTGGGGCTTTTATTC+TGG + chr3_4:41095627-41095646 None:intergenic 50.0%
CAGATCTCCAAAAGGATGGG+AGG + chr3_4:41095915-41095934 None:intergenic 50.0%
AGCTGTACTGTGCCAGTACA+CGG - chr3_4:41095962-41095981 Msa0500590:intron 50.0%
GTCCTCACAAAACACTGAGC+AGG + chr3_4:41096050-41096069 None:intergenic 50.0%
GTTGTGGACCTTCTGATGCA+TGG - chr3_4:41096321-41096340 Msa0500590:five_prime_UTR 50.0%
TTTCGGGAAGGTTCCTGTTC+TGG - chr3_4:41096399-41096418 Msa0500590:five_prime_UTR 50.0%
! ATACTTATCCGCACCGGCAC+CGG - chr3_4:41090349-41090368 Msa0500590:three_prime_UTR 55.0%
CTCCCGAGCCCTCCTTATAA+TGG - chr3_4:41091208-41091227 Msa0500590:CDS 55.0%
CCGAGCCCTCCTTATAATGG+AGG - chr3_4:41091211-41091230 Msa0500590:CDS 55.0%
!! TCAACCTGCTTGGTTTGGGC+GGG + chr3_4:41092001-41092020 None:intergenic 55.0%
GGCTCATCGAATCCAGACTG+TGG - chr3_4:41092108-41092127 Msa0500590:CDS 55.0%
TGGCAGTTGCAGTCGTGCTT+TGG - chr3_4:41092383-41092402 Msa0500590:intron 55.0%
CAGTTGCAGTCGTGCTTTGG+TGG - chr3_4:41092386-41092405 Msa0500590:intron 55.0%
CCAGACATAGGTCCAGTTCC+CGG + chr3_4:41092856-41092875 None:intergenic 55.0%
AACCGTGCAAAAGTGGCGGT+TGG - chr3_4:41092929-41092948 Msa0500590:intron 55.0%
ACCGTGCAAAAGTGGCGGTT+GGG - chr3_4:41092930-41092949 Msa0500590:intron 55.0%
GGAGAAGGGAGAAGAAGAGG+AGG - chr3_4:41093119-41093138 Msa0500590:intron 55.0%
GAAGAAGAGGAGGGTAGACG+TGG - chr3_4:41093129-41093148 Msa0500590:intron 55.0%
GTGAGAAAACGGTCTGACCC+TGG - chr3_4:41093572-41093591 Msa0500590:intron 55.0%
GGCACGGGTTCAAGGTTCAA+AGG + chr3_4:41093613-41093632 None:intergenic 55.0%
GCAACAGGCAAGACAGGACT+CGG - chr3_4:41094163-41094182 Msa0500590:CDS 55.0%
CGAATCTAGCGTTGCAGCCA+AGG - chr3_4:41094232-41094251 Msa0500590:CDS 55.0%
GGATGCTGTAACTGCCTCCT+CGG + chr3_4:41094390-41094409 None:intergenic 55.0%
GGAGGCAGTTACAGCATCCA+AGG - chr3_4:41094391-41094410 Msa0500590:CDS 55.0%
GACTGCTCATGCTGCACACT+TGG - chr3_4:41094475-41094494 Msa0500590:CDS 55.0%
TGCTGCACACTTGGAAGCAG+AGG - chr3_4:41094484-41094503 Msa0500590:CDS 55.0%
AGCCGTGGAATCAGCCAGAA+AGG - chr3_4:41094784-41094803 Msa0500590:CDS 55.0%
GGCAGAAGCAGAACAAGCCA+AGG - chr3_4:41095138-41095157 Msa0500590:intron 55.0%
GAAGCAGAACAAGCCAAGGC+TGG - chr3_4:41095142-41095161 Msa0500590:intron 55.0%
AATGAAGTGGACCCGTCCAG+TGG - chr3_4:41095289-41095308 Msa0500590:intron 55.0%
ATGAAGTGGACCCGTCCAGT+GGG - chr3_4:41095290-41095309 Msa0500590:intron 55.0%
GCTTAGCAAACGAGCTCACG+AGG - chr3_4:41095342-41095361 Msa0500590:intron 55.0%
!!! AAGCCCCAGGGCTAGTTTTG+AGG - chr3_4:41095633-41095652 Msa0500590:intron 55.0%
!!! AGCCCCAGGGCTAGTTTTGA+GGG - chr3_4:41095634-41095653 Msa0500590:intron 55.0%
!!! GGCTAGTTTTGAGGGGGGTA+AGG - chr3_4:41095642-41095661 Msa0500590:intron 55.0%
! TGTGAGTATCGTGCCGGTGC+CGG + chr3_4:41090371-41090390 None:intergenic 60.0%
GGTCCAGTTCCCGGTTCAAC+CGG + chr3_4:41092847-41092866 None:intergenic 60.0%
CCGGGAACTGGACCTATGTC+TGG - chr3_4:41092853-41092872 Msa0500590:intron 60.0%
!!! GCCCAACCGCCACTTTTGCA+CGG + chr3_4:41092934-41092953 None:intergenic 60.0%
TGCAAAAGTGGCGGTTGGGC+CGG - chr3_4:41092934-41092953 Msa0500590:intron 60.0%
GTTGGGCCGGATCCATAGGT+TGG - chr3_4:41092947-41092966 Msa0500590:intron 60.0%
GGTTGGACAGGGTTCGACCA+GGG + chr3_4:41093592-41093611 None:intergenic 60.0%
AGGTTGGACAGGGTTCGACC+AGG + chr3_4:41093593-41093612 None:intergenic 60.0%
CCAGTGTAGGCACGGGTTCA+AGG + chr3_4:41093621-41093640 None:intergenic 60.0%
CCTTGAACCCGTGCCTACAC+TGG - chr3_4:41093618-41093637 Msa0500590:intron 60.0%
CGTTGCAGCCAAGGCACAAC+TGG - chr3_4:41094241-41094260 Msa0500590:CDS 60.0%
TGAAGTGGACCCGTCCAGTG+GGG - chr3_4:41095291-41095310 Msa0500590:intron 60.0%
CGGAGAAAGGCTGGTGAGTC+TGG - chr3_4:41095586-41095605 Msa0500590:intron 60.0%
AAGGCTGGTGAGTCTGGCCA+AGG - chr3_4:41095592-41095611 Msa0500590:intron 60.0%
TGGTGAGTCTGGCCAAGGAG+TGG - chr3_4:41095597-41095616 Msa0500590:intron 60.0%
!!! GCCCCAGGGCTAGTTTTGAG+GGG - chr3_4:41095635-41095654 Msa0500590:intron 60.0%
CCCCCTCAAAACTAGCCCTG+GGG + chr3_4:41095639-41095658 None:intergenic 60.0%
!!! CCCCAGGGCTAGTTTTGAGG+GGG - chr3_4:41095636-41095655 Msa0500590:intron 60.0%
CCCCCCTCAAAACTAGCCCT+GGG + chr3_4:41095640-41095659 None:intergenic 60.0%
!!! CCCAGGGCTAGTTTTGAGGG+GGG - chr3_4:41095637-41095656 Msa0500590:intron 60.0%
ACCCCCCTCAAAACTAGCCC+TGG + chr3_4:41095641-41095660 None:intergenic 60.0%
!! GGGCTCGGGAGTGCTAACAG+CGG + chr3_4:41091199-41091218 None:intergenic 65.0%
CTCACCCGCCCAAACCAAGC+AGG - chr3_4:41091994-41092013 Msa0500590:CDS 65.0%
ACCGGATCGGCCGGTTGAAC+CGG - chr3_4:41092834-41092853 Msa0500590:intron 65.0%
!! TATCGTGCCGGTGCCGGTGC+CGG + chr3_4:41090365-41090384 None:intergenic 70.0%
CCCGGTTCAACCGGCCGATC+CGG + chr3_4:41092838-41092857 None:intergenic 70.0%
CCGGATCGGCCGGTTGAACC+GGG - chr3_4:41092835-41092854 Msa0500590:intron 70.0%
CGGCCGGTTGAACCGGGAAC+TGG - chr3_4:41092841-41092860 Msa0500590:intron 70.0%
GGCGGTTGGGCCGGATCCAT+AGG - chr3_4:41092943-41092962 Msa0500590:intron 70.0%
!! ATCCGCACCGGCACCGGCAC+CGG - chr3_4:41090355-41090374 Msa0500590:three_prime_UTR 75.0%
!!! TGCCGGTGCCGGTGCCGGTG+CGG + chr3_4:41090360-41090379 None:intergenic 80.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 41089805 41096489 41089805 ID=Msa0500590;Name=Msa0500590
chr3_4 mRNA 41089805 41096489 41089805 ID=Msa0500590-mRNA-1;Parent=Msa0500590;Name=Msa0500590-mRNA-1;_AED=0.00;_eAED=0.00;_QI=375|1|1|1|0.5|0.33|3|622|927
chr3_4 exon 41089805 41092304 41089805 ID=Msa0500590-mRNA-1:exon:8502;Parent=Msa0500590-mRNA-1
chr3_4 exon 41094162 41095105 41094162 ID=Msa0500590-mRNA-1:exon:8501;Parent=Msa0500590-mRNA-1
chr3_4 exon 41096153 41096489 41096153 ID=Msa0500590-mRNA-1:exon:8500;Parent=Msa0500590-mRNA-1
chr3_4 five_prime_UTR 41096153 41096489 41096153 ID=Msa0500590-mRNA-1:five_prime_utr;Parent=Msa0500590-mRNA-1
chr3_4 five_prime_UTR 41095068 41095105 41095068 ID=Msa0500590-mRNA-1:five_prime_utr;Parent=Msa0500590-mRNA-1
chr3_4 CDS 41094162 41095067 41094162 ID=Msa0500590-mRNA-1:cds;Parent=Msa0500590-mRNA-1
chr3_4 CDS 41090427 41092304 41090427 ID=Msa0500590-mRNA-1:cds;Parent=Msa0500590-mRNA-1
chr3_4 three_prime_UTR 41089805 41090426 41089805 ID=Msa0500590-mRNA-1:three_prime_utr;Parent=Msa0500590-mRNA-1
Gene Sequence

>Msa0500590

ATGGAGGATGTTCAAGACAAGTTGCCCTCTGACTCCTCTACAAAAATTGCTGAAGAGACACCACTAGCAGAACATATTGAAGACATATTACCCTCTGAATCCTCTTCAAAAGTTACTGAAGAGATACCACTAGCAGAACATGTTGAAGACATGTTGCCCTCTGATTCTGAATCCTCTTCAAAAGTTACTGAAGAGACACATATGGCTGAACACGTTGAAGACAAGCTACCATCTGAATCCCCTTCAAAAATTTCTGAAGAGACGCCACTGGCAGAACATGTTGAAGACAATCTACTCTCTGAGTGCTCTACAAAAGTTACTGAGACACAACTGATGGAATCCTCTGAAGAAAATACCGAAGTGGTAAACCCACCACATAATCAATCTTCCTCAGAACTTCCAATTCCACTTAGTAACGGAGAAGTGGAGTCTGGCTCTCACTTGACAGTAAATGAGCTCCCTGAATTATCAGTGTTGCCAAATGTTTCTGATGGTCAAACTATAATACAAGATGAGGATGTTTCTGTAGATAATTCAGCTTCAGTTCCAAATGATACAGTGGATGTGACAGAAACAAGCGACCAGCTAAATTTGGTTGAAGATTCTAAACCAGGTGCTCCAGAAGATATCTCTGACCAGCATGAATTGCAGGTTGATGTTACTAATGTCGCTGCAGATAATGAGATTAGACTTTCAGCTTCCTCTTCTGAAACAAAAGATTTGTTAAATGATCTTAATGAAGTAAAGATGTCTTCTGGAGCAGTTGACTCACCCGCCCAAACCAAGCAGGTTGATGTAAAAAGAGGTCTTATTGATACCACACCTCCATTCGAATCTGTCAAGGAAGCTGTTTCTAAGTTTGGAGGAATTGTCGATTGGAAGGCTCATCGAATCCAGACTGTGGAGAGGCGCAATCTAGTAGAACAGGAACTTGATAAAGCAAATGAAGAGATACCAGAATACAGAAAACAAGCAGAGACGGCTGAACAGACGAAAAATCAAGTACTAAAGGAGCTGGACAGCACCAAGAGACTTATAGAAGAGTTAAAGCTTAACCTAGAGAGAGCACAAACTGAAGAGCAACAGGCAAGACAGGACTCGGAACTTGCAAAGCTCAGAGTGGAAGAGATGGAGCAAGGTATTGCAGACGAATCTAGCGTTGCAGCCAAGGCACAACTGGAAGTTGCTAAAGCTAGGTATACGGCAGCTATTACAGATTTAGCAGCTGTGAAAGAAGAGCTGGATGCATTGCGTAAGGAATATGCTTCCTTAGTGACTGATAGAGATGAAGCTATTAAGAAAGCCGAGGAGGCAGTTACAGCATCCAAGGAAGTAGAGAAGTCAGTGGAAGATTTAACTATTGAACTAATAGCCACAAAAGAGTCATTAGAGACTGCTCATGCTGCACACTTGGAAGCAGAGGAACAAAGAATAGGAACAGTCATGGCAAGAGATCAAGATTCACTCAATTGGGAGAAGGAACTTAAACAGGCAGAAGAAGAGCTCCAGAGAATCAATGAGCAAATGTTGTCTGCAAAGGATCTCAAATCTAAACTGGAAGCAGCCTCTGGTTTGCTGCTTGATTTGAAAGCTAAATTAACTGTTTATATGGAATCAAAGTTAAAGCAAGAAGGTGATGATGAACTCTCGCAAGGAGGCCAAGAAGAACCAGAAAAGAAGACACACACAGATATACAAGCAGCCGTGGAATCAGCCAGAAAGGAACTTGAGGAGGTAAAACTAAACATAGAGAAAGCAAATGCTGAGGTTAGTTGCTTGAAGCTAGCTGCTACATCTTTAAAATCAGAACTGGAACAAGAAAAATCATCTCTTGCCTCGATTAGGCAAAGAGAGGGAATGGCCTCCATTGCAGTTGCATCTCTAGAAGCTGAATTGGACAAGACTAGATCAGAAATAGCTTTGGTTCAAATGAAGGAGAAAGAAGCCAAAGAACAAATGACCGAACTTCCAAAGAAGCTGCAACTAACAGCTGAAGAGGCTAATCAGGCCAACTTGCTTGCTCAAGCAGCTCGTGAAGAACTGCAGAAAGTAAAGGCAGAAGCAGAACAAGCCAAGGCTGGAGTAAGTACCTTGGAAAGCAGGTTACTTGCAGCTCAAAAGGAGATAGAGGCTGCAAAGGCTTCTGAAAAGTTGGCAATAGCAGCAATTAAAGCATTGCAAGAGAGTGAAGCAAATAGAAGCAAAAATGAAGTGGACCCGTCCAGTGGGGTTACACTTTCTTTGGATGAGTACTATGAGCTTAGCAAACGAGCTCACGAGGCAGAAGAGCGAGCCAATACAAGGATTGCAGCTGCTAATTCTGAAGTTGAGGTAGCTAAGGAGTCTGAACTGAAATCCTTCGAGAAGTTGGATGAAGTGAATAGAGAGATAGCTGCTAGAAGGGAATCCTTGAAGATGGCAATGGAAAAAGCTGAGAAGGCAAAGGAAGGTAAATTAGGTGTAGAACAAGAACTTAGAAGGTGGAGAGCTGAAAATGAGCAACGGAGAAAGGCTGGTGAGTCTGGCCAAGGAGTGGTTAACCAGAATAAAAGCCCCAGGGCTAGTTTTGAGGGGGGTAAGGAAGCAAATAATTTTGACCGGTCCCAGTATGCAACTAATCCTGCACAATATTTGTCAAGTCCGAAGACTTATATGCATGCAGAAAAAGATGAAGGTGGATCATCACCGGAATCAAAACATGGAAAAAAGAAGAAGAAATCGTTGTTCCCACGGGTTATGATGTTCTTTGCTAGAAGAAAAACACATTCAAACAAGTCAGGGTAA
Protein sequence

>Msa0500590

MEDVQDKLPSDSSTKIAEETPLAEHIEDILPSESSSKVTEEIPLAEHVEDMLPSDSESSSKVTEETHMAEHVEDKLPSESPSKISEETPLAEHVEDNLLSECSTKVTETQLMESSEENTEVVNPPHNQSSSELPIPLSNGEVESGSHLTVNELPELSVLPNVSDGQTIIQDEDVSVDNSASVPNDTVDVTETSDQLNLVEDSKPGAPEDISDQHELQVDVTNVAADNEIRLSASSSETKDLLNDLNEVKMSSGAVDSPAQTKQVDVKRGLIDTTPPFESVKEAVSKFGGIVDWKAHRIQTVERRNLVEQELDKANEEIPEYRKQAETAEQTKNQVLKELDSTKRLIEELKLNLERAQTEEQQARQDSELAKLRVEEMEQGIADESSVAAKAQLEVAKARYTAAITDLAAVKEELDALRKEYASLVTDRDEAIKKAEEAVTASKEVEKSVEDLTIELIATKESLETAHAAHLEAEEQRIGTVMARDQDSLNWEKELKQAEEELQRINEQMLSAKDLKSKLEAASGLLLDLKAKLTVYMESKLKQEGDDELSQGGQEEPEKKTHTDIQAAVESARKELEEVKLNIEKANAEVSCLKLAATSLKSELEQEKSSLASIRQREGMASIAVASLEAELDKTRSEIALVQMKEKEAKEQMTELPKKLQLTAEEANQANLLAQAAREELQKVKAEAEQAKAGVSTLESRLLAAQKEIEAAKASEKLAIAAIKALQESEANRSKNEVDPSSGVTLSLDEYYELSKRAHEAEERANTRIAAANSEVEVAKESELKSFEKLDEVNREIAARRESLKMAMEKAEKAKEGKLGVEQELRRWRAENEQRRKAGESGQGVVNQNKSPRASFEGGKEANNFDRSQYATNPAQYLSSPKTYMHAEKDEGGSSPESKHGKKKKKSLFPRVMMFFARRKTHSNKSG*