AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0380860

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0380860 MtrunA17_Chr3g0134551 98.205 390 7 0 1 390 1 390 0.0 801
Msa0380860 MtrunA17_Chr3g0082001 97.949 390 8 0 1 390 1 390 0.0 800
Msa0380860 MtrunA17_Chr3g0134561 82.821 390 67 0 1 390 1 390 0.0 703
Msa0380860 MtrunA17_Chr3g0134571 80.902 377 71 1 14 390 3 378 0.0 651
Msa0380860 MtrunA17_Chr1g0152831 72.494 389 105 2 1 388 34 421 0.0 602
Msa0380860 MtrunA17_Chr1g0152811 70.513 390 113 2 1 390 38 425 0.0 578
Msa0380860 MtrunA17_Chr1g0152791 71.498 207 58 1 184 390 2 207 4.92e-108 316
Msa0380860 MtrunA17_Chr4g0036961 43.351 376 194 9 26 390 5 372 4.06e-98 296
Msa0380860 MtrunA17_Chr4g0068121 42.328 378 191 9 28 390 7 372 3.53e-96 291
Msa0380860 MtrunA17_Chr4g0068141 41.799 378 193 9 28 390 7 372 4.93e-96 291
Msa0380860 MtrunA17_Chr3g0104611 41.344 387 198 13 20 390 4 377 1.48e-86 267
Msa0380860 MtrunA17_Chr1g0152801 64.000 125 45 0 68 192 10 134 1.23e-53 174
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0380860 AT4G24220.1 71.026 390 111 2 1 390 1 388 0.0 599
Msa0380860 AT4G24220.2 70.769 390 111 3 1 390 1 387 0.0 592
Msa0380860 AT5G58750.2 38.947 380 207 15 26 390 8 377 8.72e-75 237
Msa0380860 AT5G58750.1 38.384 396 213 16 10 390 6 385 1.05e-74 237

Find 134 sgRNAs with CRISPR-Local

Find 317 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAATTTGGGATTGATGAGTA+TGG 0.223312 3_1:+82835745 Msa0380860:CDS
CCCGCCGTCCACGACCTTCT+TGG 0.232378 3_1:+82835050 Msa0380860:CDS
GCTTTAGTCGTTGGCGTAAC+TGG 0.238597 3_1:+82834950 Msa0380860:CDS
TGATTGCAGAGCAACATATT+TGG 0.240104 3_1:+82835629 Msa0380860:CDS
CCAATTGATAAGCGAATTCT+TGG 0.244988 3_1:-82835980 None:intergenic
CATAGACCACTTCTCATCTT+TGG 0.251994 3_1:+82835466 Msa0380860:CDS
CGCTTATCAATTGGATTGAT+AGG 0.266346 3_1:+82835989 Msa0380860:CDS
TTGTGTTAAGCATGTGTATT+TGG 0.282705 3_1:-82834686 None:intergenic
TATTACTTTGCAGAAGAAAC+TGG 0.333028 3_1:+82834892 Msa0380860:intron
GGTGTTCCGTTGAGATTTCC+AGG 0.337111 3_1:+82835559 Msa0380860:CDS
GCTACGTTCTGGAAGCTTCT+TGG 0.337550 3_1:-82834929 None:intergenic
TGGTGGTGGTCTGGTGCTAT+TGG 0.337632 3_1:+82834789 Msa0380860:CDS
CCAAGAATTCGCTTATCAAT+TGG 0.337633 3_1:+82835980 Msa0380860:CDS
CATAATGCTTGCCGCCGGTT+TGG 0.342780 3_1:-82835291 None:intergenic
TGGTTTGCAGATGCTTGTTT+TGG 0.344545 3_1:+82835892 Msa0380860:CDS
ATCGGTGAGGACGGAGAGTT+TGG 0.345552 3_1:-82835134 None:intergenic
TGGGTTAAATATGCTGGTTT+AGG 0.350682 3_1:+82836376 Msa0380860:three_prime_UTR
GTTGGGCCCTTTGAGTCTTT+CGG 0.351274 3_1:+82835313 Msa0380860:CDS
AGGTTATCGCGGAACAATTT+GGG 0.354578 3_1:+82835731 Msa0380860:CDS
TGGCGGAGATTCGGAGCGTT+TGG 0.356685 3_1:-82835259 None:intergenic
GATTGCAGAGCAACATATTT+GGG 0.360846 3_1:+82835630 Msa0380860:CDS
AAGGTTATCGCGGAACAATT+TGG 0.372868 3_1:+82835730 Msa0380860:CDS
AACGCTTCATTCTTAGCATA+AGG 0.373398 3_1:-82835664 None:intergenic
TACTAATAATGTTGTTGTAC+TGG 0.376077 3_1:+82836211 Msa0380860:three_prime_UTR
GGCGGTAGATGGAAGGTTTA+CGG 0.384626 3_1:+82835022 Msa0380860:CDS
TTTATTTGGGTTAAATATGC+TGG 0.391678 3_1:+82836370 Msa0380860:three_prime_UTR
CACCGAGGATATGCCACGTT+TGG 0.392545 3_1:+82835363 Msa0380860:CDS
CACACGTCTTCTACGTCTGC+TGG 0.394964 3_1:+82835161 Msa0380860:CDS
TGAAGGATAAGGGTCCTGTT+TGG 0.400714 3_1:+82835809 Msa0380860:CDS
GAGATAAGAAAGTGACAAGT+AGG 0.402102 3_1:-82834728 None:intergenic
CAGACACACCAGGCGGTAGA+TGG 0.403455 3_1:+82835011 Msa0380860:CDS
TGTGAAGGAGAATGGGTTGC+AGG 0.417786 3_1:+82835840 Msa0380860:CDS
TTAGTTCCATTACATTAGAA+TGG 0.419247 3_1:+82836279 Msa0380860:three_prime_UTR
TAGTTCCATTACATTAGAAT+GGG 0.423923 3_1:+82836280 Msa0380860:three_prime_UTR
ATTCATCTACCCAAATCTAT+AGG 0.430900 3_1:+82834652 None:intergenic
GGCGGAGATTCGGAGCGTTT+GGG 0.432770 3_1:-82835258 None:intergenic
TTCCAGGGACTAAGTTAGCT+TGG 0.433800 3_1:+82835575 Msa0380860:CDS
TCCAGGGACTAAGTTAGCTT+GGG 0.436133 3_1:+82835576 Msa0380860:CDS
CCTCGGTGTATGGTGGTTCA+TGG 0.444550 3_1:-82835348 None:intergenic
TTCACAATCTCATCCCAAAC+AGG 0.445292 3_1:-82835823 None:intergenic
AGGTCCTCGTTTGAAGTTAA+CGG 0.445908 3_1:+82835780 Msa0380860:CDS
ACTATGAGCTGGTGGTGGTC+TGG 0.446263 3_1:+82834780 Msa0380860:exon
ATTGAGACATGGCGGAGATT+CGG 0.455047 3_1:-82835268 None:intergenic
AACGGAGTTGATGAAGGATA+AGG 0.464931 3_1:+82835798 Msa0380860:CDS
GAAGGATAAGGGTCCTGTTT+GGG 0.466201 3_1:+82835810 Msa0380860:CDS
CGCCGGTTTGGATTGAGACA+TGG 0.468188 3_1:-82835279 None:intergenic
CTCAGCAACTTCTTCCAGCT+TGG 0.469169 3_1:-82835866 None:intergenic
ACCGGCGGCAAGCATTATGT+TGG 0.479546 3_1:+82835295 Msa0380860:CDS
TACAGTATGATGAATATCAT+TGG 0.480772 3_1:+82835499 Msa0380860:CDS
CGTGGCATATCCTCGGTGTA+TGG 0.483163 3_1:-82835358 None:intergenic
TGAACCCCATTCTAATGTAA+TGG 0.485889 3_1:-82836285 None:intergenic
CGCTGCAATTTGTAAGCATG+AGG 0.489083 3_1:+82835537 Msa0380860:CDS
ATGATATTCATCATACTGTA+AGG 0.490885 3_1:-82835496 None:intergenic
CGCCATGTCTCAATCCAAAC+CGG 0.492347 3_1:+82835277 Msa0380860:CDS
GAAGTTAACGGAGTTGATGA+AGG 0.493606 3_1:+82835792 Msa0380860:CDS
CCAAGAAGGTCGTGGACGGC+GGG 0.494278 3_1:-82835050 None:intergenic
TGGTGCTATTGGTGCTGCCA+AGG 0.502349 3_1:+82834800 Msa0380860:CDS
CCGGCGGCAAGCATTATGTT+GGG 0.504932 3_1:+82835296 Msa0380860:CDS
GATGAGATTGTGAAGGAGAA+TGG 0.506930 3_1:+82835832 Msa0380860:CDS
GGTGGTGGTGTCCTTTAGAT+CGG 0.510658 3_1:-82835113 None:intergenic
AATTTGGGATTGATGAGTAT+GGG 0.510731 3_1:+82835746 Msa0380860:CDS
AGGCACAATCTTGTAAGCTC+TGG 0.514865 3_1:-82836013 None:intergenic
TGGGTTGCAGGTGACCAAGC+TGG 0.516254 3_1:+82835852 Msa0380860:CDS
CAGAACGTAGCTTTAGTCGT+TGG 0.524219 3_1:+82834941 Msa0380860:CDS
AATTGCAGCGTAAACACAAA+TGG 0.531807 3_1:-82835524 None:intergenic
TCCCAAGCTAACTTAGTCCC+TGG 0.532880 3_1:-82835577 None:intergenic
TCCAAGAAGGTCGTGGACGG+CGG 0.533828 3_1:-82835051 None:intergenic
GAAGAAACAGGGAAGAAAGA+AGG 0.534377 3_1:+82835427 Msa0380860:CDS
GATCTTGCCGAAAGACTCAA+AGG 0.535462 3_1:-82835320 None:intergenic
ATGAACAAGTCGAAAGAGCA+TGG 0.537267 3_1:+82835937 Msa0380860:CDS
ATGCGACATCACCGATCTAA+AGG 0.545012 3_1:+82835102 Msa0380860:CDS
ATCCAAACGTGGCATATCCT+CGG 0.545879 3_1:-82835365 None:intergenic
ACGGAGTTGATGAAGGATAA+GGG 0.545911 3_1:+82835799 Msa0380860:CDS
CCCAACATAATGCTTGCCGC+CGG 0.546768 3_1:-82835296 None:intergenic
ACACGTCTTCTACGTCTGCT+GGG 0.548690 3_1:+82835162 Msa0380860:CDS
TCGCATTGGACGTATTCCAC+AGG 0.552292 3_1:-82835085 None:intergenic
ATGAGATTGTGAAGGAGAAT+GGG 0.554010 3_1:+82835833 Msa0380860:CDS
TCTGAATCTCAACTATGAGC+TGG 0.557759 3_1:+82834769 Msa0380860:exon
GCAACATATTTGGGCTGCAG+TGG 0.558473 3_1:+82835639 Msa0380860:CDS
AGCTTGGGAGAATTACTACA+TGG 0.558994 3_1:+82835591 Msa0380860:CDS
TAAACCTTCCATCTACCGCC+TGG 0.565249 3_1:-82835019 None:intergenic
CAGGTGGAAGCAATTGTGGA+AGG 0.568535 3_1:+82835711 Msa0380860:CDS
ACTAATAATGTTGTTGTACT+GGG 0.569247 3_1:+82836212 Msa0380860:three_prime_UTR
GAGTATGGGTTCGACGAGGA+AGG 0.569325 3_1:+82835760 Msa0380860:CDS
GTAGAAGACGTGTGTGACAT+CGG 0.569903 3_1:-82835152 None:intergenic
CAACGACTAAAGCTACGTTC+TGG 0.570536 3_1:-82834940 None:intergenic
AAAGTAGAACGATACTAAGT+CGG 0.570557 3_1:-82836061 None:intergenic
GGTGAGGACGGAGAGTTTGG+TGG 0.571288 3_1:-82835131 None:intergenic
AGATAAGAAAGTGACAAGTA+GGG 0.573997 3_1:-82834727 None:intergenic
CGTTCCAAGAAGGTCGTGGA+CGG 0.577568 3_1:-82835054 None:intergenic
GGGTGATCTGCGTTCCAAGA+AGG 0.580299 3_1:-82835064 None:intergenic
GAAAATCCAAAGATGAGAAG+TGG 0.581784 3_1:-82835472 None:intergenic
GGAAGAAAGAAGGTGTGAGT+TGG 0.582552 3_1:+82835437 Msa0380860:CDS
GAAGCGTTCAATTGTAGCAA+TGG 0.584136 3_1:+82835679 Msa0380860:CDS
TCTAGAATAAGTAAGATTCG+AGG 0.585976 3_1:+82836109 Msa0380860:three_prime_UTR
CTAGAATAAGTAAGATTCGA+GGG 0.586889 3_1:+82836110 Msa0380860:three_prime_UTR
TTAGATCGGTGATGTCGCAT+TGG 0.589199 3_1:-82835099 None:intergenic
GAGGACGGAGAGTTTGGTGG+TGG 0.598145 3_1:-82835128 None:intergenic
CGCATTGGACGTATTCCACA+GGG 0.599054 3_1:-82835084 None:intergenic
ATCTTGCCGAAAGACTCAAA+GGG 0.602975 3_1:-82835319 None:intergenic
CCGCCTGGTGTGTCTGCTAG+AGG 0.604279 3_1:-82835004 None:intergenic
TCTGCGTTCCAAGAAGGTCG+TGG 0.605244 3_1:-82835058 None:intergenic
TCTCAACTATGAGCTGGTGG+TGG 0.607226 3_1:+82834775 Msa0380860:exon
GGCATATCCTCGGTGTATGG+TGG 0.609968 3_1:-82835355 None:intergenic
CTACCTCTAGCAGACACACC+AGG 0.613410 3_1:+82835001 Msa0380860:CDS
GTGTTCCGTTGAGATTTCCA+GGG 0.614181 3_1:+82835560 Msa0380860:CDS
GTGTGTGACATCGGTGAGGA+CGG 0.615222 3_1:-82835143 None:intergenic
GTTGGCGTAACTGGCATCGT+CGG 0.617661 3_1:+82834959 Msa0380860:CDS
TTAGTCCCTGGAAATCTCAA+CGG 0.621975 3_1:-82835565 None:intergenic
CACACCAGGCGGTAGATGGA+AGG 0.626092 3_1:+82835015 Msa0380860:CDS
TGAACAAGTCGAAAGAGCAT+GGG 0.628727 3_1:+82835938 Msa0380860:CDS
AGTTCCATTACATTAGAATG+GGG 0.629086 3_1:+82836281 Msa0380860:three_prime_UTR
ATTCGATATTCACTCACTCA+AGG 0.633093 3_1:-82836033 None:intergenic
GAATCTCAACTATGAGCTGG+TGG 0.639383 3_1:+82834772 Msa0380860:exon
TGGAAGAAGTTGCTGAGTGG+TGG 0.642132 3_1:+82835872 Msa0380860:CDS
GCAGAAAACTGTGAAATCAA+CGG 0.652460 3_1:+82835202 Msa0380860:CDS
GCTGCAATTTGTAAGCATGA+GGG 0.652717 3_1:+82835538 Msa0380860:CDS
CAAAACTGCAACTACACACG+AGG 0.662799 3_1:-82836400 None:intergenic
TGGAACTAACTAGATAGCTG+AGG 0.664455 3_1:-82836265 None:intergenic
GCAATTGTGGAAGGTTATCG+CGG 0.668471 3_1:+82835720 Msa0380860:CDS
TACTTTGCAGAAGAAACTGG+AGG 0.672832 3_1:+82834895 Msa0380860:intron
CATGTCTCAATCCAAACCGG+CGG 0.688004 3_1:+82835280 Msa0380860:CDS
TGTTTGGGATGAGATTGTGA+AGG 0.709911 3_1:+82835825 Msa0380860:CDS
AACTCCGTTAACTTCAAACG+AGG 0.714416 3_1:-82835784 None:intergenic
CGGTTTGGATTGAGACATGG+CGG 0.724287 3_1:-82835276 None:intergenic
AAATTATGATAATCCAAACG+TGG 0.724823 3_1:-82835376 None:intergenic
AGACGTGTGTGACATCGGTG+AGG 0.730340 3_1:-82835147 None:intergenic
AGCTGGAAGAAGTTGCTGAG+TGG 0.740024 3_1:+82835869 Msa0380860:CDS
TTGGAACGCAGATCACCCTG+TGG 0.740880 3_1:+82835069 Msa0380860:CDS
TGATGAGTATGGGTTCGACG+AGG 0.742697 3_1:+82835756 Msa0380860:CDS
CGTTTGGGATAACTGCAGTG+AGG 0.764252 3_1:-82835243 None:intergenic
CCTCTAGCAGACACACCAGG+CGG 0.780203 3_1:+82835004 Msa0380860:CDS
CCATGAACCACCATACACCG+AGG 0.787424 3_1:+82835348 Msa0380860:CDS
CTAGAGGTAGAATTTCAGCG+AGG 0.802486 3_1:-82834988 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAAAACTTGTAAATTTATT+TGG + chr3_1:82836356-82836375 Msa0380860:three_prime_UTR 10.0%
!! AAAAACTTGTAAATTTATTT+GGG + chr3_1:82836357-82836376 Msa0380860:three_prime_UTR 10.0%
!! TAAAAACTTGTAAATTTATT+TGG + chr3_1:82836356-82836375 Msa0380860:three_prime_UTR 10.0%
!! AAAAACTTGTAAATTTATTT+GGG + chr3_1:82836357-82836376 Msa0380860:three_prime_UTR 10.0%
!!! TTTTATATACCTATAGATTT+GGG - chr3_1:82834664-82834683 None:intergenic 15.0%
!!! TTTTATATACCTATAGATTT+GGG - chr3_1:82834664-82834683 None:intergenic 15.0%
!!! GTTTTATATACCTATAGATT+TGG - chr3_1:82834665-82834684 None:intergenic 20.0%
!!! GTTTTATATACCTATAGATT+TGG - chr3_1:82834665-82834684 None:intergenic 20.0%
! AGAAAAAAGAAGAAGAAGAA+GGG - chr3_1:82834843-82834862 None:intergenic 25.0%
! TAGAAAAAAGAAGAAGAAGA+AGG - chr3_1:82834844-82834863 None:intergenic 25.0%
! AAATTATGATAATCCAAACG+TGG - chr3_1:82835379-82835398 None:intergenic 25.0%
!!! ATGTTTTGTTTGAAGAAACA+GGG + chr3_1:82835416-82835435 Msa0380860:CDS 25.0%
! ATGATATTCATCATACTGTA+AGG - chr3_1:82835499-82835518 None:intergenic 25.0%
! TACAGTATGATGAATATCAT+TGG + chr3_1:82835499-82835518 Msa0380860:CDS 25.0%
! TACTAATAATGTTGTTGTAC+TGG + chr3_1:82836211-82836230 Msa0380860:three_prime_UTR 25.0%
! ACTAATAATGTTGTTGTACT+GGG + chr3_1:82836212-82836231 Msa0380860:three_prime_UTR 25.0%
! TTAGTTCCATTACATTAGAA+TGG + chr3_1:82836279-82836298 Msa0380860:three_prime_UTR 25.0%
! TAGTTCCATTACATTAGAAT+GGG + chr3_1:82836280-82836299 Msa0380860:three_prime_UTR 25.0%
!! TTTATTTGGGTTAAATATGC+TGG + chr3_1:82836370-82836389 Msa0380860:three_prime_UTR 25.0%
! AGAAAAAAGAAGAAGAAGAA+GGG - chr3_1:82834843-82834862 None:intergenic 25.0%
! TAGAAAAAAGAAGAAGAAGA+AGG - chr3_1:82834844-82834863 None:intergenic 25.0%
! AAATTATGATAATCCAAACG+TGG - chr3_1:82835379-82835398 None:intergenic 25.0%
!!! ATGTTTTGTTTGAAGAAACA+GGG + chr3_1:82835416-82835435 Msa0380860:CDS 25.0%
! ATGATATTCATCATACTGTA+AGG - chr3_1:82835499-82835518 None:intergenic 25.0%
! TACAGTATGATGAATATCAT+TGG + chr3_1:82835499-82835518 Msa0380860:CDS 25.0%
! TACTAATAATGTTGTTGTAC+TGG + chr3_1:82836211-82836230 Msa0380860:three_prime_UTR 25.0%
! ACTAATAATGTTGTTGTACT+GGG + chr3_1:82836212-82836231 Msa0380860:three_prime_UTR 25.0%
! TTAGTTCCATTACATTAGAA+TGG + chr3_1:82836279-82836298 Msa0380860:three_prime_UTR 25.0%
! TAGTTCCATTACATTAGAAT+GGG + chr3_1:82836280-82836299 Msa0380860:three_prime_UTR 25.0%
!! TTTATTTGGGTTAAATATGC+TGG + chr3_1:82836370-82836389 Msa0380860:three_prime_UTR 25.0%
TTGTGTTAAGCATGTGTATT+TGG - chr3_1:82834689-82834708 None:intergenic 30.0%
AGATAAGAAAGTGACAAGTA+GGG - chr3_1:82834730-82834749 None:intergenic 30.0%
GAAATTGAGATAGTATACCT+TGG - chr3_1:82834820-82834839 None:intergenic 30.0%
GAAAAAAGAAGAAGAAGAAG+GGG - chr3_1:82834842-82834861 None:intergenic 30.0%
TATTACTTTGCAGAAGAAAC+TGG + chr3_1:82834892-82834911 Msa0380860:intron 30.0%
!!! GATGTTTTGTTTGAAGAAAC+AGG + chr3_1:82835415-82835434 Msa0380860:CDS 30.0%
! AATTTGGGATTGATGAGTAT+GGG + chr3_1:82835746-82835765 Msa0380860:CDS 30.0%
AAAGTAGAACGATACTAAGT+CGG - chr3_1:82836064-82836083 None:intergenic 30.0%
! TCTAGAATAAGTAAGATTCG+AGG + chr3_1:82836109-82836128 Msa0380860:three_prime_UTR 30.0%
CTAGAATAAGTAAGATTCGA+GGG + chr3_1:82836110-82836129 Msa0380860:three_prime_UTR 30.0%
AGTTCCATTACATTAGAATG+GGG + chr3_1:82836281-82836300 Msa0380860:three_prime_UTR 30.0%
TTGTGTTAAGCATGTGTATT+TGG - chr3_1:82834689-82834708 None:intergenic 30.0%
AGATAAGAAAGTGACAAGTA+GGG - chr3_1:82834730-82834749 None:intergenic 30.0%
GAAATTGAGATAGTATACCT+TGG - chr3_1:82834820-82834839 None:intergenic 30.0%
GAAAAAAGAAGAAGAAGAAG+GGG - chr3_1:82834842-82834861 None:intergenic 30.0%
TATTACTTTGCAGAAGAAAC+TGG + chr3_1:82834892-82834911 Msa0380860:intron 30.0%
!!! GATGTTTTGTTTGAAGAAAC+AGG + chr3_1:82835415-82835434 Msa0380860:CDS 30.0%
! AATTTGGGATTGATGAGTAT+GGG + chr3_1:82835746-82835765 Msa0380860:CDS 30.0%
AAAGTAGAACGATACTAAGT+CGG - chr3_1:82836064-82836083 None:intergenic 30.0%
! TCTAGAATAAGTAAGATTCG+AGG + chr3_1:82836109-82836128 Msa0380860:three_prime_UTR 30.0%
CTAGAATAAGTAAGATTCGA+GGG + chr3_1:82836110-82836129 Msa0380860:three_prime_UTR 30.0%
AGTTCCATTACATTAGAATG+GGG + chr3_1:82836281-82836300 Msa0380860:three_prime_UTR 30.0%
GAGATAAGAAAGTGACAAGT+AGG - chr3_1:82834731-82834750 None:intergenic 35.0%
! GATTTCACAGTTTTCTGCTT+CGG - chr3_1:82835200-82835219 None:intergenic 35.0%
GCAGAAAACTGTGAAATCAA+CGG + chr3_1:82835202-82835221 Msa0380860:CDS 35.0%
GAAAATCCAAAGATGAGAAG+TGG - chr3_1:82835475-82835494 None:intergenic 35.0%
AATTGCAGCGTAAACACAAA+TGG - chr3_1:82835527-82835546 None:intergenic 35.0%
TGATTGCAGAGCAACATATT+TGG + chr3_1:82835629-82835648 Msa0380860:CDS 35.0%
GATTGCAGAGCAACATATTT+GGG + chr3_1:82835630-82835649 Msa0380860:CDS 35.0%
AACGCTTCATTCTTAGCATA+AGG - chr3_1:82835667-82835686 None:intergenic 35.0%
! CAATTTGGGATTGATGAGTA+TGG + chr3_1:82835745-82835764 Msa0380860:CDS 35.0%
ATGAGATTGTGAAGGAGAAT+GGG + chr3_1:82835833-82835852 Msa0380860:CDS 35.0%
CCAATTGATAAGCGAATTCT+TGG - chr3_1:82835983-82836002 None:intergenic 35.0%
CCAAGAATTCGCTTATCAAT+TGG + chr3_1:82835980-82835999 Msa0380860:CDS 35.0%
CGCTTATCAATTGGATTGAT+AGG + chr3_1:82835989-82836008 Msa0380860:CDS 35.0%
ATTCGATATTCACTCACTCA+AGG - chr3_1:82836036-82836055 None:intergenic 35.0%
TGAACCCCATTCTAATGTAA+TGG - chr3_1:82836288-82836307 None:intergenic 35.0%
!! TGGGTTAAATATGCTGGTTT+AGG + chr3_1:82836376-82836395 Msa0380860:three_prime_UTR 35.0%
TACCTATAGATTTGGGTAGA+TGG - chr3_1:82834657-82834676 None:intergenic 35.0%
GAGATAAGAAAGTGACAAGT+AGG - chr3_1:82834731-82834750 None:intergenic 35.0%
! GATTTCACAGTTTTCTGCTT+CGG - chr3_1:82835200-82835219 None:intergenic 35.0%
GCAGAAAACTGTGAAATCAA+CGG + chr3_1:82835202-82835221 Msa0380860:CDS 35.0%
GAAAATCCAAAGATGAGAAG+TGG - chr3_1:82835475-82835494 None:intergenic 35.0%
AATTGCAGCGTAAACACAAA+TGG - chr3_1:82835527-82835546 None:intergenic 35.0%
TGATTGCAGAGCAACATATT+TGG + chr3_1:82835629-82835648 Msa0380860:CDS 35.0%
GATTGCAGAGCAACATATTT+GGG + chr3_1:82835630-82835649 Msa0380860:CDS 35.0%
AACGCTTCATTCTTAGCATA+AGG - chr3_1:82835667-82835686 None:intergenic 35.0%
! CAATTTGGGATTGATGAGTA+TGG + chr3_1:82835745-82835764 Msa0380860:CDS 35.0%
ATGAGATTGTGAAGGAGAAT+GGG + chr3_1:82835833-82835852 Msa0380860:CDS 35.0%
CCAATTGATAAGCGAATTCT+TGG - chr3_1:82835983-82836002 None:intergenic 35.0%
CCAAGAATTCGCTTATCAAT+TGG + chr3_1:82835980-82835999 Msa0380860:CDS 35.0%
CGCTTATCAATTGGATTGAT+AGG + chr3_1:82835989-82836008 Msa0380860:CDS 35.0%
ATTCGATATTCACTCACTCA+AGG - chr3_1:82836036-82836055 None:intergenic 35.0%
TGAACCCCATTCTAATGTAA+TGG - chr3_1:82836288-82836307 None:intergenic 35.0%
!! TGGGTTAAATATGCTGGTTT+AGG + chr3_1:82836376-82836395 Msa0380860:three_prime_UTR 35.0%
TCTGAATCTCAACTATGAGC+TGG + chr3_1:82834769-82834788 Msa0380860:exon 40.0%
TACTTTGCAGAAGAAACTGG+AGG + chr3_1:82834895-82834914 Msa0380860:intron 40.0%
ATCTTGCCGAAAGACTCAAA+GGG - chr3_1:82835322-82835341 None:intergenic 40.0%
GAAGAAACAGGGAAGAAAGA+AGG + chr3_1:82835427-82835446 Msa0380860:CDS 40.0%
CATAGACCACTTCTCATCTT+TGG + chr3_1:82835466-82835485 Msa0380860:CDS 40.0%
GCTGCAATTTGTAAGCATGA+GGG + chr3_1:82835538-82835557 Msa0380860:CDS 40.0%
TTAGTCCCTGGAAATCTCAA+CGG - chr3_1:82835568-82835587 None:intergenic 40.0%
AGCTTGGGAGAATTACTACA+TGG + chr3_1:82835591-82835610 Msa0380860:CDS 40.0%
! GAAGCGTTCAATTGTAGCAA+TGG + chr3_1:82835679-82835698 Msa0380860:CDS 40.0%
!! GTAGCAATGGTGATGTTTTC+AGG + chr3_1:82835692-82835711 Msa0380860:CDS 40.0%
!!! TTTTCAGGTGGAAGCAATTG+TGG + chr3_1:82835707-82835726 Msa0380860:CDS 40.0%
AAGGTTATCGCGGAACAATT+TGG + chr3_1:82835730-82835749 Msa0380860:CDS 40.0%
AGGTTATCGCGGAACAATTT+GGG + chr3_1:82835731-82835750 Msa0380860:CDS 40.0%
! AGGTCCTCGTTTGAAGTTAA+CGG + chr3_1:82835780-82835799 Msa0380860:CDS 40.0%
AACTCCGTTAACTTCAAACG+AGG - chr3_1:82835787-82835806 None:intergenic 40.0%
!! GAAGTTAACGGAGTTGATGA+AGG + chr3_1:82835792-82835811 Msa0380860:CDS 40.0%
!! AACGGAGTTGATGAAGGATA+AGG + chr3_1:82835798-82835817 Msa0380860:CDS 40.0%
!! ACGGAGTTGATGAAGGATAA+GGG + chr3_1:82835799-82835818 Msa0380860:CDS 40.0%
TTCACAATCTCATCCCAAAC+AGG - chr3_1:82835826-82835845 None:intergenic 40.0%
! TGTTTGGGATGAGATTGTGA+AGG + chr3_1:82835825-82835844 Msa0380860:CDS 40.0%
GATGAGATTGTGAAGGAGAA+TGG + chr3_1:82835832-82835851 Msa0380860:CDS 40.0%
!! TGGTTTGCAGATGCTTGTTT+TGG + chr3_1:82835892-82835911 Msa0380860:CDS 40.0%
!!! TTTGCAGATGCTTGTTTTGG+AGG + chr3_1:82835895-82835914 Msa0380860:CDS 40.0%
!!! TTGCAGATGCTTGTTTTGGA+GGG + chr3_1:82835896-82835915 Msa0380860:CDS 40.0%
!!! ATGCTTGTTTTGGAGGGAAT+GGG + chr3_1:82835902-82835921 Msa0380860:CDS 40.0%
!! TTTTGGAGGGAATGGGTTTA+CGG + chr3_1:82835909-82835928 Msa0380860:CDS 40.0%
ATGAACAAGTCGAAAGAGCA+TGG + chr3_1:82835937-82835956 Msa0380860:CDS 40.0%
! TGAACAAGTCGAAAGAGCAT+GGG + chr3_1:82835938-82835957 Msa0380860:CDS 40.0%
!! TCGAAAGAGCATGGGTTTTT+GGG + chr3_1:82835946-82835965 Msa0380860:CDS 40.0%
TGGAACTAACTAGATAGCTG+AGG - chr3_1:82836268-82836287 None:intergenic 40.0%
TCTGAATCTCAACTATGAGC+TGG + chr3_1:82834769-82834788 Msa0380860:exon 40.0%
TACTTTGCAGAAGAAACTGG+AGG + chr3_1:82834895-82834914 Msa0380860:intron 40.0%
ATCTTGCCGAAAGACTCAAA+GGG - chr3_1:82835322-82835341 None:intergenic 40.0%
GAAGAAACAGGGAAGAAAGA+AGG + chr3_1:82835427-82835446 Msa0380860:CDS 40.0%
CATAGACCACTTCTCATCTT+TGG + chr3_1:82835466-82835485 Msa0380860:CDS 40.0%
GCTGCAATTTGTAAGCATGA+GGG + chr3_1:82835538-82835557 Msa0380860:CDS 40.0%
TTAGTCCCTGGAAATCTCAA+CGG - chr3_1:82835568-82835587 None:intergenic 40.0%
AGCTTGGGAGAATTACTACA+TGG + chr3_1:82835591-82835610 Msa0380860:CDS 40.0%
! GAAGCGTTCAATTGTAGCAA+TGG + chr3_1:82835679-82835698 Msa0380860:CDS 40.0%
!! GTAGCAATGGTGATGTTTTC+AGG + chr3_1:82835692-82835711 Msa0380860:CDS 40.0%
!!! TTTTCAGGTGGAAGCAATTG+TGG + chr3_1:82835707-82835726 Msa0380860:CDS 40.0%
AAGGTTATCGCGGAACAATT+TGG + chr3_1:82835730-82835749 Msa0380860:CDS 40.0%
AGGTTATCGCGGAACAATTT+GGG + chr3_1:82835731-82835750 Msa0380860:CDS 40.0%
! AGGTCCTCGTTTGAAGTTAA+CGG + chr3_1:82835780-82835799 Msa0380860:CDS 40.0%
AACTCCGTTAACTTCAAACG+AGG - chr3_1:82835787-82835806 None:intergenic 40.0%
!! GAAGTTAACGGAGTTGATGA+AGG + chr3_1:82835792-82835811 Msa0380860:CDS 40.0%
!! AACGGAGTTGATGAAGGATA+AGG + chr3_1:82835798-82835817 Msa0380860:CDS 40.0%
!! ACGGAGTTGATGAAGGATAA+GGG + chr3_1:82835799-82835818 Msa0380860:CDS 40.0%
TTCACAATCTCATCCCAAAC+AGG - chr3_1:82835826-82835845 None:intergenic 40.0%
! TGTTTGGGATGAGATTGTGA+AGG + chr3_1:82835825-82835844 Msa0380860:CDS 40.0%
GATGAGATTGTGAAGGAGAA+TGG + chr3_1:82835832-82835851 Msa0380860:CDS 40.0%
!! TGGTTTGCAGATGCTTGTTT+TGG + chr3_1:82835892-82835911 Msa0380860:CDS 40.0%
!!! TTTGCAGATGCTTGTTTTGG+AGG + chr3_1:82835895-82835914 Msa0380860:CDS 40.0%
!!! TTGCAGATGCTTGTTTTGGA+GGG + chr3_1:82835896-82835915 Msa0380860:CDS 40.0%
!!! ATGCTTGTTTTGGAGGGAAT+GGG + chr3_1:82835902-82835921 Msa0380860:CDS 40.0%
!! TTTTGGAGGGAATGGGTTTA+CGG + chr3_1:82835909-82835928 Msa0380860:CDS 40.0%
ATGAACAAGTCGAAAGAGCA+TGG + chr3_1:82835937-82835956 Msa0380860:CDS 40.0%
! TGAACAAGTCGAAAGAGCAT+GGG + chr3_1:82835938-82835957 Msa0380860:CDS 40.0%
!! TCGAAAGAGCATGGGTTTTT+GGG + chr3_1:82835946-82835965 Msa0380860:CDS 40.0%
TGGAACTAACTAGATAGCTG+AGG - chr3_1:82836268-82836287 None:intergenic 40.0%
GAATCTCAACTATGAGCTGG+TGG + chr3_1:82834772-82834791 Msa0380860:exon 45.0%
CAACGACTAAAGCTACGTTC+TGG - chr3_1:82834943-82834962 None:intergenic 45.0%
!! CAGAACGTAGCTTTAGTCGT+TGG + chr3_1:82834941-82834960 Msa0380860:CDS 45.0%
CTAGAGGTAGAATTTCAGCG+AGG - chr3_1:82834991-82835010 None:intergenic 45.0%
TTAGATCGGTGATGTCGCAT+TGG - chr3_1:82835102-82835121 None:intergenic 45.0%
ATGCGACATCACCGATCTAA+AGG + chr3_1:82835102-82835121 Msa0380860:CDS 45.0%
GTAGAAGACGTGTGTGACAT+CGG - chr3_1:82835155-82835174 None:intergenic 45.0%
! TCACAGTTTTCTGCTTCGGT+GGG - chr3_1:82835196-82835215 None:intergenic 45.0%
! TTCACAGTTTTCTGCTTCGG+TGG - chr3_1:82835197-82835216 None:intergenic 45.0%
! ATTGAGACATGGCGGAGATT+CGG - chr3_1:82835271-82835290 None:intergenic 45.0%
GATCTTGCCGAAAGACTCAA+AGG - chr3_1:82835323-82835342 None:intergenic 45.0%
ATCCAAACGTGGCATATCCT+CGG - chr3_1:82835368-82835387 None:intergenic 45.0%
! GGAAGAAAGAAGGTGTGAGT+TGG + chr3_1:82835437-82835456 Msa0380860:CDS 45.0%
CGCTGCAATTTGTAAGCATG+AGG + chr3_1:82835537-82835556 Msa0380860:CDS 45.0%
GTGTTCCGTTGAGATTTCCA+GGG + chr3_1:82835560-82835579 Msa0380860:CDS 45.0%
TTCCAGGGACTAAGTTAGCT+TGG + chr3_1:82835575-82835594 Msa0380860:CDS 45.0%
! TCCAGGGACTAAGTTAGCTT+GGG + chr3_1:82835576-82835595 Msa0380860:CDS 45.0%
!! GCAATGGTGATGTTTTCAGG+TGG + chr3_1:82835695-82835714 Msa0380860:CDS 45.0%
GCAATTGTGGAAGGTTATCG+CGG + chr3_1:82835720-82835739 Msa0380860:CDS 45.0%
TGAAGGATAAGGGTCCTGTT+TGG + chr3_1:82835809-82835828 Msa0380860:CDS 45.0%
GAAGGATAAGGGTCCTGTTT+GGG + chr3_1:82835810-82835829 Msa0380860:CDS 45.0%
!!! GATGCTTGTTTTGGAGGGAA+TGG + chr3_1:82835901-82835920 Msa0380860:CDS 45.0%
!! GTCGAAAGAGCATGGGTTTT+TGG + chr3_1:82835945-82835964 Msa0380860:CDS 45.0%
!!! AGCATGGGTTTTTGGGATTC+AGG + chr3_1:82835953-82835972 Msa0380860:CDS 45.0%
AGGCACAATCTTGTAAGCTC+TGG - chr3_1:82836016-82836035 None:intergenic 45.0%
GAATCTCAACTATGAGCTGG+TGG + chr3_1:82834772-82834791 Msa0380860:exon 45.0%
CAACGACTAAAGCTACGTTC+TGG - chr3_1:82834943-82834962 None:intergenic 45.0%
!! CAGAACGTAGCTTTAGTCGT+TGG + chr3_1:82834941-82834960 Msa0380860:CDS 45.0%
CTAGAGGTAGAATTTCAGCG+AGG - chr3_1:82834991-82835010 None:intergenic 45.0%
TTAGATCGGTGATGTCGCAT+TGG - chr3_1:82835102-82835121 None:intergenic 45.0%
ATGCGACATCACCGATCTAA+AGG + chr3_1:82835102-82835121 Msa0380860:CDS 45.0%
GTAGAAGACGTGTGTGACAT+CGG - chr3_1:82835155-82835174 None:intergenic 45.0%
! TCACAGTTTTCTGCTTCGGT+GGG - chr3_1:82835196-82835215 None:intergenic 45.0%
! TTCACAGTTTTCTGCTTCGG+TGG - chr3_1:82835197-82835216 None:intergenic 45.0%
! ATTGAGACATGGCGGAGATT+CGG - chr3_1:82835271-82835290 None:intergenic 45.0%
GATCTTGCCGAAAGACTCAA+AGG - chr3_1:82835323-82835342 None:intergenic 45.0%
ATCCAAACGTGGCATATCCT+CGG - chr3_1:82835368-82835387 None:intergenic 45.0%
! GGAAGAAAGAAGGTGTGAGT+TGG + chr3_1:82835437-82835456 Msa0380860:CDS 45.0%
CGCTGCAATTTGTAAGCATG+AGG + chr3_1:82835537-82835556 Msa0380860:CDS 45.0%
GTGTTCCGTTGAGATTTCCA+GGG + chr3_1:82835560-82835579 Msa0380860:CDS 45.0%
TTCCAGGGACTAAGTTAGCT+TGG + chr3_1:82835575-82835594 Msa0380860:CDS 45.0%
! TCCAGGGACTAAGTTAGCTT+GGG + chr3_1:82835576-82835595 Msa0380860:CDS 45.0%
!! GCAATGGTGATGTTTTCAGG+TGG + chr3_1:82835695-82835714 Msa0380860:CDS 45.0%
GCAATTGTGGAAGGTTATCG+CGG + chr3_1:82835720-82835739 Msa0380860:CDS 45.0%
TGAAGGATAAGGGTCCTGTT+TGG + chr3_1:82835809-82835828 Msa0380860:CDS 45.0%
GAAGGATAAGGGTCCTGTTT+GGG + chr3_1:82835810-82835829 Msa0380860:CDS 45.0%
!!! GATGCTTGTTTTGGAGGGAA+TGG + chr3_1:82835901-82835920 Msa0380860:CDS 45.0%
!! GTCGAAAGAGCATGGGTTTT+TGG + chr3_1:82835945-82835964 Msa0380860:CDS 45.0%
!!! AGCATGGGTTTTTGGGATTC+AGG + chr3_1:82835953-82835972 Msa0380860:CDS 45.0%
AGGCACAATCTTGTAAGCTC+TGG - chr3_1:82836016-82836035 None:intergenic 45.0%
!! TTGTAAAAAATAATAATAAT+AGG - chr3_1:82836320-82836339 None:intergenic 5.0%
!! TTGTAAAAAATAATAATAAT+AGG - chr3_1:82836320-82836339 None:intergenic 5.0%
TCTCAACTATGAGCTGGTGG+TGG + chr3_1:82834775-82834794 Msa0380860:exon 50.0%
!! GCTACGTTCTGGAAGCTTCT+TGG - chr3_1:82834932-82834951 None:intergenic 50.0%
GCTTTAGTCGTTGGCGTAAC+TGG + chr3_1:82834950-82834969 Msa0380860:CDS 50.0%
TAAACCTTCCATCTACCGCC+TGG - chr3_1:82835022-82835041 None:intergenic 50.0%
GGCGGTAGATGGAAGGTTTA+CGG + chr3_1:82835022-82835041 Msa0380860:CDS 50.0%
CGCATTGGACGTATTCCACA+GGG - chr3_1:82835087-82835106 None:intergenic 50.0%
TCGCATTGGACGTATTCCAC+AGG - chr3_1:82835088-82835107 None:intergenic 50.0%
! GGTGGTGGTGTCCTTTAGAT+CGG - chr3_1:82835116-82835135 None:intergenic 50.0%
ACACGTCTTCTACGTCTGCT+GGG + chr3_1:82835162-82835181 Msa0380860:CDS 50.0%
! AGTTTTCTGCTTCGGTGGGA+CGG - chr3_1:82835192-82835211 None:intergenic 50.0%
! CGTTTGGGATAACTGCAGTG+AGG - chr3_1:82835246-82835265 None:intergenic 50.0%
! CGGTTTGGATTGAGACATGG+CGG - chr3_1:82835279-82835298 None:intergenic 50.0%
CGCCATGTCTCAATCCAAAC+CGG + chr3_1:82835277-82835296 Msa0380860:CDS 50.0%
CATGTCTCAATCCAAACCGG+CGG + chr3_1:82835280-82835299 Msa0380860:CDS 50.0%
GTTGGGCCCTTTGAGTCTTT+CGG + chr3_1:82835313-82835332 Msa0380860:CDS 50.0%
GGTGTTCCGTTGAGATTTCC+AGG + chr3_1:82835559-82835578 Msa0380860:CDS 50.0%
TCCCAAGCTAACTTAGTCCC+TGG - chr3_1:82835580-82835599 None:intergenic 50.0%
GCAACATATTTGGGCTGCAG+TGG + chr3_1:82835639-82835658 Msa0380860:CDS 50.0%
CAGGTGGAAGCAATTGTGGA+AGG + chr3_1:82835711-82835730 Msa0380860:CDS 50.0%
TGATGAGTATGGGTTCGACG+AGG + chr3_1:82835756-82835775 Msa0380860:CDS 50.0%
!! TGTGAAGGAGAATGGGTTGC+AGG + chr3_1:82835840-82835859 Msa0380860:CDS 50.0%
CTCAGCAACTTCTTCCAGCT+TGG - chr3_1:82835869-82835888 None:intergenic 50.0%
AGCTGGAAGAAGTTGCTGAG+TGG + chr3_1:82835869-82835888 Msa0380860:CDS 50.0%
TGGAAGAAGTTGCTGAGTGG+TGG + chr3_1:82835872-82835891 Msa0380860:CDS 50.0%
TCTCAACTATGAGCTGGTGG+TGG + chr3_1:82834775-82834794 Msa0380860:exon 50.0%
!! GCTACGTTCTGGAAGCTTCT+TGG - chr3_1:82834932-82834951 None:intergenic 50.0%
GCTTTAGTCGTTGGCGTAAC+TGG + chr3_1:82834950-82834969 Msa0380860:CDS 50.0%
TAAACCTTCCATCTACCGCC+TGG - chr3_1:82835022-82835041 None:intergenic 50.0%
GGCGGTAGATGGAAGGTTTA+CGG + chr3_1:82835022-82835041 Msa0380860:CDS 50.0%
CGCATTGGACGTATTCCACA+GGG - chr3_1:82835087-82835106 None:intergenic 50.0%
TCGCATTGGACGTATTCCAC+AGG - chr3_1:82835088-82835107 None:intergenic 50.0%
! GGTGGTGGTGTCCTTTAGAT+CGG - chr3_1:82835116-82835135 None:intergenic 50.0%
ACACGTCTTCTACGTCTGCT+GGG + chr3_1:82835162-82835181 Msa0380860:CDS 50.0%
! AGTTTTCTGCTTCGGTGGGA+CGG - chr3_1:82835192-82835211 None:intergenic 50.0%
! CGTTTGGGATAACTGCAGTG+AGG - chr3_1:82835246-82835265 None:intergenic 50.0%
! CGGTTTGGATTGAGACATGG+CGG - chr3_1:82835279-82835298 None:intergenic 50.0%
CGCCATGTCTCAATCCAAAC+CGG + chr3_1:82835277-82835296 Msa0380860:CDS 50.0%
CATGTCTCAATCCAAACCGG+CGG + chr3_1:82835280-82835299 Msa0380860:CDS 50.0%
GTTGGGCCCTTTGAGTCTTT+CGG + chr3_1:82835313-82835332 Msa0380860:CDS 50.0%
GGTGTTCCGTTGAGATTTCC+AGG + chr3_1:82835559-82835578 Msa0380860:CDS 50.0%
TCCCAAGCTAACTTAGTCCC+TGG - chr3_1:82835580-82835599 None:intergenic 50.0%
GCAACATATTTGGGCTGCAG+TGG + chr3_1:82835639-82835658 Msa0380860:CDS 50.0%
CAGGTGGAAGCAATTGTGGA+AGG + chr3_1:82835711-82835730 Msa0380860:CDS 50.0%
TGATGAGTATGGGTTCGACG+AGG + chr3_1:82835756-82835775 Msa0380860:CDS 50.0%
!! TGTGAAGGAGAATGGGTTGC+AGG + chr3_1:82835840-82835859 Msa0380860:CDS 50.0%
CTCAGCAACTTCTTCCAGCT+TGG - chr3_1:82835869-82835888 None:intergenic 50.0%
AGCTGGAAGAAGTTGCTGAG+TGG + chr3_1:82835869-82835888 Msa0380860:CDS 50.0%
TGGAAGAAGTTGCTGAGTGG+TGG + chr3_1:82835872-82835891 Msa0380860:CDS 50.0%
!! ACTATGAGCTGGTGGTGGTC+TGG + chr3_1:82834780-82834799 Msa0380860:exon 55.0%
!! TGGTGGTGGTCTGGTGCTAT+TGG + chr3_1:82834789-82834808 Msa0380860:CDS 55.0%
!! TGGTGCTATTGGTGCTGCCA+AGG + chr3_1:82834800-82834819 Msa0380860:CDS 55.0%
GTTGGCGTAACTGGCATCGT+CGG + chr3_1:82834959-82834978 Msa0380860:CDS 55.0%
CTACCTCTAGCAGACACACC+AGG + chr3_1:82835001-82835020 Msa0380860:CDS 55.0%
CGTTCCAAGAAGGTCGTGGA+CGG - chr3_1:82835057-82835076 None:intergenic 55.0%
TCTGCGTTCCAAGAAGGTCG+TGG - chr3_1:82835061-82835080 None:intergenic 55.0%
GGGTGATCTGCGTTCCAAGA+AGG - chr3_1:82835067-82835086 None:intergenic 55.0%
TTGGAACGCAGATCACCCTG+TGG + chr3_1:82835069-82835088 Msa0380860:CDS 55.0%
ATCGGTGAGGACGGAGAGTT+TGG - chr3_1:82835137-82835156 None:intergenic 55.0%
GTGTGTGACATCGGTGAGGA+CGG - chr3_1:82835146-82835165 None:intergenic 55.0%
AGACGTGTGTGACATCGGTG+AGG - chr3_1:82835150-82835169 None:intergenic 55.0%
CACACGTCTTCTACGTCTGC+TGG + chr3_1:82835161-82835180 Msa0380860:CDS 55.0%
!! CGCCGGTTTGGATTGAGACA+TGG - chr3_1:82835282-82835301 None:intergenic 55.0%
! CATAATGCTTGCCGCCGGTT+TGG - chr3_1:82835294-82835313 None:intergenic 55.0%
ACCGGCGGCAAGCATTATGT+TGG + chr3_1:82835295-82835314 Msa0380860:CDS 55.0%
CCCAACATAATGCTTGCCGC+CGG - chr3_1:82835299-82835318 None:intergenic 55.0%
CCGGCGGCAAGCATTATGTT+GGG + chr3_1:82835296-82835315 Msa0380860:CDS 55.0%
! CCTCGGTGTATGGTGGTTCA+TGG - chr3_1:82835351-82835370 None:intergenic 55.0%
CCATGAACCACCATACACCG+AGG + chr3_1:82835348-82835367 Msa0380860:CDS 55.0%
! GGCATATCCTCGGTGTATGG+TGG - chr3_1:82835358-82835377 None:intergenic 55.0%
! CGTGGCATATCCTCGGTGTA+TGG - chr3_1:82835361-82835380 None:intergenic 55.0%
CACCGAGGATATGCCACGTT+TGG + chr3_1:82835363-82835382 Msa0380860:CDS 55.0%
GAGTATGGGTTCGACGAGGA+AGG + chr3_1:82835760-82835779 Msa0380860:CDS 55.0%
!! ACTATGAGCTGGTGGTGGTC+TGG + chr3_1:82834780-82834799 Msa0380860:exon 55.0%
!! TGGTGGTGGTCTGGTGCTAT+TGG + chr3_1:82834789-82834808 Msa0380860:CDS 55.0%
!! TGGTGCTATTGGTGCTGCCA+AGG + chr3_1:82834800-82834819 Msa0380860:CDS 55.0%
GTTGGCGTAACTGGCATCGT+CGG + chr3_1:82834959-82834978 Msa0380860:CDS 55.0%
CTACCTCTAGCAGACACACC+AGG + chr3_1:82835001-82835020 Msa0380860:CDS 55.0%
CGTTCCAAGAAGGTCGTGGA+CGG - chr3_1:82835057-82835076 None:intergenic 55.0%
TCTGCGTTCCAAGAAGGTCG+TGG - chr3_1:82835061-82835080 None:intergenic 55.0%
GGGTGATCTGCGTTCCAAGA+AGG - chr3_1:82835067-82835086 None:intergenic 55.0%
TTGGAACGCAGATCACCCTG+TGG + chr3_1:82835069-82835088 Msa0380860:CDS 55.0%
ATCGGTGAGGACGGAGAGTT+TGG - chr3_1:82835137-82835156 None:intergenic 55.0%
GTGTGTGACATCGGTGAGGA+CGG - chr3_1:82835146-82835165 None:intergenic 55.0%
AGACGTGTGTGACATCGGTG+AGG - chr3_1:82835150-82835169 None:intergenic 55.0%
CACACGTCTTCTACGTCTGC+TGG + chr3_1:82835161-82835180 Msa0380860:CDS 55.0%
!! CGCCGGTTTGGATTGAGACA+TGG - chr3_1:82835282-82835301 None:intergenic 55.0%
! CATAATGCTTGCCGCCGGTT+TGG - chr3_1:82835294-82835313 None:intergenic 55.0%
ACCGGCGGCAAGCATTATGT+TGG + chr3_1:82835295-82835314 Msa0380860:CDS 55.0%
CCCAACATAATGCTTGCCGC+CGG - chr3_1:82835299-82835318 None:intergenic 55.0%
CCGGCGGCAAGCATTATGTT+GGG + chr3_1:82835296-82835315 Msa0380860:CDS 55.0%
! CCTCGGTGTATGGTGGTTCA+TGG - chr3_1:82835351-82835370 None:intergenic 55.0%
CCATGAACCACCATACACCG+AGG + chr3_1:82835348-82835367 Msa0380860:CDS 55.0%
! GGCATATCCTCGGTGTATGG+TGG - chr3_1:82835358-82835377 None:intergenic 55.0%
! CGTGGCATATCCTCGGTGTA+TGG - chr3_1:82835361-82835380 None:intergenic 55.0%
CACCGAGGATATGCCACGTT+TGG + chr3_1:82835363-82835382 Msa0380860:CDS 55.0%
GAGTATGGGTTCGACGAGGA+AGG + chr3_1:82835760-82835779 Msa0380860:CDS 55.0%
CCTCTAGCAGACACACCAGG+CGG + chr3_1:82835004-82835023 Msa0380860:CDS 60.0%
CAGACACACCAGGCGGTAGA+TGG + chr3_1:82835011-82835030 Msa0380860:CDS 60.0%
CACACCAGGCGGTAGATGGA+AGG + chr3_1:82835015-82835034 Msa0380860:CDS 60.0%
TCCAAGAAGGTCGTGGACGG+CGG - chr3_1:82835054-82835073 None:intergenic 60.0%
! GAGGACGGAGAGTTTGGTGG+TGG - chr3_1:82835131-82835150 None:intergenic 60.0%
GGTGAGGACGGAGAGTTTGG+TGG - chr3_1:82835134-82835153 None:intergenic 60.0%
! GGCGGAGATTCGGAGCGTTT+GGG - chr3_1:82835261-82835280 None:intergenic 60.0%
! TGGCGGAGATTCGGAGCGTT+TGG - chr3_1:82835262-82835281 None:intergenic 60.0%
TGGGTTGCAGGTGACCAAGC+TGG + chr3_1:82835852-82835871 Msa0380860:CDS 60.0%
CCTCTAGCAGACACACCAGG+CGG + chr3_1:82835004-82835023 Msa0380860:CDS 60.0%
CAGACACACCAGGCGGTAGA+TGG + chr3_1:82835011-82835030 Msa0380860:CDS 60.0%
CACACCAGGCGGTAGATGGA+AGG + chr3_1:82835015-82835034 Msa0380860:CDS 60.0%
TCCAAGAAGGTCGTGGACGG+CGG - chr3_1:82835054-82835073 None:intergenic 60.0%
! GAGGACGGAGAGTTTGGTGG+TGG - chr3_1:82835131-82835150 None:intergenic 60.0%
GGTGAGGACGGAGAGTTTGG+TGG - chr3_1:82835134-82835153 None:intergenic 60.0%
! GGCGGAGATTCGGAGCGTTT+GGG - chr3_1:82835261-82835280 None:intergenic 60.0%
! TGGCGGAGATTCGGAGCGTT+TGG - chr3_1:82835262-82835281 None:intergenic 60.0%
TGGGTTGCAGGTGACCAAGC+TGG + chr3_1:82835852-82835871 Msa0380860:CDS 60.0%
CCGCCTGGTGTGTCTGCTAG+AGG - chr3_1:82835007-82835026 None:intergenic 65.0%
CCAAGAAGGTCGTGGACGGC+GGG - chr3_1:82835053-82835072 None:intergenic 65.0%
CCGCCTGGTGTGTCTGCTAG+AGG - chr3_1:82835007-82835026 None:intergenic 65.0%
CCAAGAAGGTCGTGGACGGC+GGG - chr3_1:82835053-82835072 None:intergenic 65.0%
CCCGCCGTCCACGACCTTCT+TGG + chr3_1:82835050-82835069 Msa0380860:CDS 70.0%
CCCGCCGTCCACGACCTTCT+TGG + chr3_1:82835050-82835069 Msa0380860:CDS 70.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 82834655 82836415 82834655 ID=Msa0380860;Name=Msa0380860
chr3_1 mRNA 82834655 82836415 82834655 ID=Msa0380860-mRNA-1;Parent=Msa0380860;Name=Msa0380860-mRNA-1;_AED=0.32;_eAED=0.32;_QI=128|1|1|1|1|1|2|377|390
chr3_1 exon 82834655 82834821 82834655 ID=Msa0380860-mRNA-1:exon:21190;Parent=Msa0380860-mRNA-1
chr3_1 exon 82834905 82836415 82834905 ID=Msa0380860-mRNA-1:exon:21191;Parent=Msa0380860-mRNA-1
chr3_1 five_prime_UTR 82834655 82834782 82834655 ID=Msa0380860-mRNA-1:five_prime_utr;Parent=Msa0380860-mRNA-1
chr3_1 CDS 82834783 82834821 82834783 ID=Msa0380860-mRNA-1:cds;Parent=Msa0380860-mRNA-1
chr3_1 CDS 82834905 82836038 82834905 ID=Msa0380860-mRNA-1:cds;Parent=Msa0380860-mRNA-1
chr3_1 three_prime_UTR 82836039 82836415 82836039 ID=Msa0380860-mRNA-1:three_prime_utr;Parent=Msa0380860-mRNA-1
Gene Sequence

>Msa0380860

ATGAGCTGGTGGTGGTCTGGTGCTATTGGTGCTGCCAAGAAGAAACTGGAGGAAGATGAAGCACCAAGAAGCTTCCAGAACGTAGCTTTAGTCGTTGGCGTAACTGGCATCGTCGGCAACAGCCTCGCTGAAATTCTACCTCTAGCAGACACACCAGGCGGTAGATGGAAGGTTTACGGCGTTGCCCGCCGTCCACGACCTTCTTGGAACGCAGATCACCCTGTGGAATACGTCCAATGCGACATCACCGATCTAAAGGACACCACCACCAAACTCTCCGTCCTCACCGATGTCACACACGTCTTCTACGTCTGCTGGGCTAGCCGTCCCACCGAAGCAGAAAACTGTGAAATCAACGGCGCTATGCTCAAAAACGTCCTCACTGCAGTTATCCCAAACGCTCCGAATCTCCGCCATGTCTCAATCCAAACCGGCGGCAAGCATTATGTTGGGCCCTTTGAGTCTTTCGGCAAGATCAAGTACCATGAACCACCATACACCGAGGATATGCCACGTTTGGATTATCATAATTTCTATTATACACTTGAAGATGTTTTGTTTGAAGAAACAGGGAAGAAAGAAGGTGTGAGTTGGTCTGTTCATAGACCACTTCTCATCTTTGGATTTTCACCTTACAGTATGATGAATATCATTGGCACCATTTGTGTTTACGCTGCAATTTGTAAGCATGAGGGTGTTCCGTTGAGATTTCCAGGGACTAAGTTAGCTTGGGAGAATTACTACATGGCTTCTGATGCAGATTTGATTGCAGAGCAACATATTTGGGCTGCAGTGGATCCTTATGCTAAGAATGAAGCGTTCAATTGTAGCAATGGTGATGTTTTCAGGTGGAAGCAATTGTGGAAGGTTATCGCGGAACAATTTGGGATTGATGAGTATGGGTTCGACGAGGAAGGTCCTCGTTTGAAGTTAACGGAGTTGATGAAGGATAAGGGTCCTGTTTGGGATGAGATTGTGAAGGAGAATGGGTTGCAGGTGACCAAGCTGGAAGAAGTTGCTGAGTGGTGGTTTGCAGATGCTTGTTTTGGAGGGAATGGGTTTACGGATAGCATGAACAAGTCGAAAGAGCATGGGTTTTTGGGATTCAGGAACACCAAGAATTCGCTTATCAATTGGATTGATAGGACCAGAGCTTACAAGATTGTGCCTTGA
Protein sequence

>Msa0380860

MSWWWSGAIGAAKKKLEEDEAPRSFQNVALVVGVTGIVGNSLAEILPLADTPGGRWKVYGVARRPRPSWNADHPVEYVQCDITDLKDTTTKLSVLTDVTHVFYVCWASRPTEAENCEINGAMLKNVLTAVIPNAPNLRHVSIQTGGKHYVGPFESFGKIKYHEPPYTEDMPRLDYHNFYYTLEDVLFEETGKKEGVSWSVHRPLLIFGFSPYSMMNIIGTICVYAAICKHEGVPLRFPGTKLAWENYYMASDADLIAEQHIWAAVDPYAKNEAFNCSNGDVFRWKQLWKVIAEQFGIDEYGFDEEGPRLKLTELMKDKGPVWDEIVKENGLQVTKLEEVAEWWFADACFGGNGFTDSMNKSKEHGFLGFRNTKNSLINWIDRTRAYKIVP*