AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0371170

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0371170 MtrunA17_Chr3g0117601 98.810 336 4 0 1 336 1 336 0.0 690
Msa0371170 MtrunA17_Chr3g0127201 34.615 312 142 15 43 324 8 287 7.81e-39 139
Msa0371170 MtrunA17_Chr4g0030051 55.039 129 42 3 39 159 21 141 4.24e-36 132
Msa0371170 MtrunA17_Chr2g0326001 54.331 127 45 4 38 155 19 141 9.38e-36 131
Msa0371170 MtrunA17_Chr8g0346551 52.800 125 44 4 45 158 10 130 1.52e-35 130
Msa0371170 MtrunA17_Chr4g0031411 58.491 106 37 3 44 142 55 160 2.30e-34 128
Msa0371170 MtrunA17_Chr2g0328021 72.603 73 18 1 50 122 51 121 6.87e-34 126
Msa0371170 MtrunA17_Chr1g0188851 53.125 128 46 5 41 163 25 143 1.22e-33 125
Msa0371170 MtrunA17_Chr8g0374251 66.197 71 24 0 61 131 68 138 2.90e-31 120
Msa0371170 MtrunA17_Chr4g0010151 69.333 75 20 2 44 115 62 136 9.85e-31 119
Msa0371170 MtrunA17_Chr7g0237921 60.870 92 29 3 27 115 43 130 3.89e-30 117
Msa0371170 MtrunA17_Chr7g0223311 56.122 98 27 3 34 115 34 131 8.09e-30 117
Msa0371170 MtrunA17_Chr8g0367161 67.164 67 22 0 50 116 21 87 8.37e-30 116
Msa0371170 MtrunA17_Chr3g0126201 71.875 64 18 0 52 115 42 105 8.42e-30 116
Msa0371170 MtrunA17_Chr2g0282441 77.049 61 14 0 52 112 16 76 1.33e-29 115
Msa0371170 MtrunA17_Chr4g0047001 81.818 55 10 0 62 116 56 110 1.81e-29 116
Msa0371170 MtrunA17_Chr8g0374111 55.319 94 35 2 52 141 16 106 1.11e-28 110
Msa0371170 MtrunA17_Chr5g0411951 78.571 56 12 0 56 111 38 93 1.22e-28 113
Msa0371170 MtrunA17_Chr1g0177251 71.212 66 19 0 59 124 10 75 2.35e-28 111
Msa0371170 MtrunA17_Chr8g0341671 74.603 63 16 0 56 118 15 77 6.54e-28 108
Msa0371170 MtrunA17_Chr4g0061761 84.314 51 8 0 61 111 40 90 6.13e-27 108
Msa0371170 MtrunA17_Chr2g0282511 84.000 50 8 0 60 109 44 93 4.02e-26 105
Msa0371170 MtrunA17_Chr2g0308011 82.353 51 9 0 59 109 35 85 6.36e-26 102
Msa0371170 MtrunA17_Chr3g0092111 66.667 69 22 1 50 118 126 193 1.08e-25 107
Msa0371170 MtrunA17_Chr2g0282051 47.458 118 42 5 1 116 1 100 2.04e-25 103
Msa0371170 MtrunA17_Chr4g0047761 76.786 56 12 1 61 116 72 126 6.42e-25 102
Msa0371170 MtrunA17_Chr7g0217581 43.697 119 59 2 25 136 190 307 3.45e-24 103
Msa0371170 MtrunA17_Chr4g0042481 60.870 69 26 1 50 118 112 179 4.43e-24 102
Msa0371170 MtrunA17_Chr6g0453321 44.545 110 54 1 30 132 98 207 5.64e-24 102
Msa0371170 MtrunA17_Chr7g0254161 42.342 111 58 2 20 130 66 170 1.04e-23 100
Msa0371170 MtrunA17_Chr6g0460721 42.478 113 57 4 7 119 43 147 2.41e-23 98.6
Msa0371170 MtrunA17_Chr8g0355261 53.333 75 34 1 41 115 99 172 4.83e-23 99.0
Msa0371170 MtrunA17_Chr6g0460731 55.714 70 30 1 50 119 86 154 7.19e-23 97.8
Msa0371170 MtrunA17_Chr5g0417571 41.600 125 55 3 12 118 71 195 2.81e-22 95.5
Msa0371170 MtrunA17_Chr2g0283811 66.667 54 18 0 61 114 47 100 3.48e-22 91.3
Msa0371170 MtrunA17_Chr5g0417601 63.793 58 21 0 57 114 136 193 1.43e-20 91.7
Msa0371170 MtrunA17_Chr5g0417561 45.161 93 47 1 26 114 80 172 3.19e-20 90.1
Msa0371170 MtrunA17_Chr5g0417551 68.519 54 17 0 61 114 127 180 6.85e-20 89.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0371170 AT5G62940.1 42.748 393 145 23 1 334 1 372 1.27e-55 186
Msa0371170 AT5G60200.1 66.292 89 27 3 33 121 30 115 2.49e-35 129
Msa0371170 AT1G51700.1 47.656 128 54 2 56 170 28 155 7.09e-33 121
Msa0371170 AT2G28510.1 56.364 110 35 2 63 160 50 158 5.21e-32 121
Msa0371170 AT3G45610.1 43.373 166 68 7 54 212 32 178 2.41e-31 118
Msa0371170 AT4G24060.1 50.000 122 46 2 50 156 42 163 2.72e-31 120
Msa0371170 AT5G02460.1 70.667 75 19 2 44 115 75 149 5.15e-31 121
Msa0371170 AT3G55370.1 65.000 80 25 2 43 119 55 134 7.19e-31 119
Msa0371170 AT3G55370.2 65.000 80 25 2 43 119 55 134 8.81e-31 119
Msa0371170 AT3G55370.3 65.000 80 25 2 43 119 100 179 1.30e-30 119
Msa0371170 AT2G37590.1 64.474 76 24 1 44 116 69 144 1.74e-30 118
Msa0371170 AT1G07640.1 69.444 72 19 1 47 115 4 75 6.32e-30 115
Msa0371170 AT5G60850.1 66.234 77 20 1 50 120 34 110 6.70e-30 116
Msa0371170 AT1G07640.2 69.444 72 19 1 47 115 60 131 1.09e-29 116
Msa0371170 AT1G07640.3 69.444 72 19 1 47 115 68 139 1.21e-29 116
Msa0371170 AT1G64620.1 52.672 131 47 3 45 164 33 159 1.76e-29 116
Msa0371170 AT3G61850.2 65.753 73 23 1 46 118 49 119 3.49e-29 114
Msa0371170 AT3G61850.3 65.753 73 23 1 46 118 49 119 3.49e-29 114
Msa0371170 AT5G65590.1 62.963 81 25 1 35 115 20 95 3.83e-29 114
Msa0371170 AT3G61850.1 65.753 73 23 1 46 118 61 131 3.89e-29 114
Msa0371170 AT3G61850.5 65.753 73 23 1 46 118 49 119 5.87e-29 114
Msa0371170 AT3G61850.4 65.753 73 23 1 46 118 61 131 6.09e-29 114
Msa0371170 AT3G52440.1 68.182 66 21 0 58 123 22 87 1.03e-28 111
Msa0371170 AT1G28310.1 82.143 56 10 0 61 116 27 82 1.39e-28 112
Msa0371170 AT3G52440.2 68.182 66 21 0 58 123 41 106 2.02e-28 111
Msa0371170 AT1G28310.2 82.143 56 10 0 61 116 51 106 2.16e-28 112
Msa0371170 AT1G21340.1 69.444 72 19 1 63 134 40 108 3.01e-28 110
Msa0371170 AT3G21270.1 54.717 106 42 3 61 164 29 130 4.88e-28 108
Msa0371170 AT4G21050.1 59.551 89 33 2 54 142 19 104 5.91e-28 108
Msa0371170 AT2G28810.2 65.152 66 22 1 47 112 64 128 5.95e-28 111
Msa0371170 AT2G28810.1 65.152 66 22 1 47 112 81 145 1.06e-27 111
Msa0371170 AT4G00940.1 53.398 103 31 2 63 151 70 169 8.91e-27 107
Msa0371170 AT4G00940.3 53.398 103 31 2 63 151 70 169 8.91e-27 107
Msa0371170 AT4G00940.2 53.398 103 31 2 63 151 70 169 8.91e-27 107
Msa0371170 AT2G46590.1 55.682 88 36 2 22 108 30 115 2.59e-26 107
Msa0371170 AT4G38000.1 60.256 78 30 1 41 117 21 98 2.62e-26 105
Msa0371170 AT2G46590.2 55.682 88 36 2 22 108 42 127 2.97e-26 107
Msa0371170 AT3G50410.1 75.439 57 14 0 61 117 30 86 7.29e-26 104
Msa0371170 AT5G66940.1 70.968 62 18 0 61 122 32 93 1.06e-25 103
Msa0371170 AT1G47655.1 73.684 57 13 1 55 109 21 77 5.92e-25 100
Msa0371170 AT3G47500.1 63.235 68 24 1 51 118 101 167 4.87e-24 102
Msa0371170 AT5G62430.1 46.087 115 48 3 50 164 44 144 6.02e-24 100
Msa0371170 AT5G39660.3 63.768 69 24 1 50 118 128 195 9.95e-24 101
Msa0371170 AT5G39660.1 63.768 69 24 1 50 118 128 195 9.95e-24 101
Msa0371170 AT5G39660.2 63.768 69 24 1 50 118 128 195 9.95e-24 101
Msa0371170 AT1G69570.1 64.516 62 21 1 53 114 125 185 3.91e-23 99.4
Msa0371170 AT1G29160.1 60.000 70 26 1 45 114 48 115 4.48e-23 94.7
Msa0371170 AT2G34140.1 47.253 91 36 1 24 114 33 111 1.46e-22 93.2
Msa0371170 AT4G21040.1 57.971 69 29 0 63 131 27 95 4.59e-22 93.6
Msa0371170 AT1G26790.1 53.333 75 35 0 58 132 108 182 8.63e-22 95.1
Msa0371170 AT4G21080.1 56.000 75 30 1 63 134 27 101 4.24e-21 91.3
Msa0371170 AT4G21030.1 55.556 63 25 1 50 112 13 72 6.51e-15 72.8

Find 116 sgRNAs with CRISPR-Local

Find 298 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TACTTGTTCTCCATGAAATT+AGG 0.146876 3_1:-69228117 None:intergenic
AGTAAGTTAGAAGGCATAAT+TGG 0.168612 3_1:+69228192 Msa0371170:CDS
TCTCACCTAAGTAACTTATT+TGG 0.188613 3_1:+69228072 Msa0371170:CDS
TAGCAATGGTGCTTATTTAA+TGG 0.193039 3_1:+69228374 Msa0371170:CDS
AAAGAAAGCTGAAGATCTTT+AGG 0.209545 3_1:-69228033 None:intergenic
CATTCAAGTGACAATAGTTT+AGG 0.231938 3_1:-69228474 None:intergenic
TGCCTTGGTGTGTTTCCTTT+TGG 0.256108 3_1:+69228850 Msa0371170:three_prime_UTR
ACTTGTTCTCCATGAAATTA+GGG 0.276978 3_1:-69228116 None:intergenic
GATATGATGAATGGACAAAA+TGG 0.284919 3_1:+69228294 Msa0371170:CDS
TTTGGAGCTAATGGAGCATT+AGG 0.302981 3_1:+69228090 Msa0371170:CDS
TGATCATATGAATATGAATA+TGG 0.304551 3_1:+69228254 Msa0371170:CDS
AGTAACTTATTTGGAGCTAA+TGG 0.308114 3_1:+69228081 Msa0371170:CDS
GTTCCTAAGTGTTCCTCCTT+TGG 0.313562 3_1:-69227890 None:intergenic
TTCTCTTCACGTCTGCAATA+TGG 0.315298 3_1:+69227124 Msa0371170:CDS
ATTCAAGTGACAATAGTTTA+GGG 0.332848 3_1:-69228473 None:intergenic
AAGAAAGCTGAAGATCTTTA+GGG 0.336634 3_1:-69228032 None:intergenic
ACACACCAAGGCAGTAGATT+TGG 0.347710 3_1:-69228840 None:intergenic
ATGAATATGGGTGTTGGGAT+TGG 0.368536 3_1:+69228267 Msa0371170:CDS
GCATAATTGGGAGTAGTTCT+AGG 0.373441 3_1:+69228205 Msa0371170:CDS
CTTTCCATCATGAAGTCAAT+AGG 0.377139 3_1:-69228171 None:intergenic
GTTGTTGTAATAGCAGAATT+TGG 0.387536 3_1:-69227815 None:intergenic
TTTCTACAGCCTCCACCAAC+AGG 0.392353 3_1:-69227916 None:intergenic
AAAGGTCAGTCATTTGGATA+TGG 0.392934 3_1:+69228528 Msa0371170:CDS
GCAAGACTTGTAGAAGGTAT+TGG 0.393470 3_1:+69227866 Msa0371170:CDS
AAAGTGATTGATTAGGTCAT+TGG 0.395429 3_1:-69228641 None:intergenic
GCTGGAAAAGGTCAGTCATT+TGG 0.395618 3_1:+69228522 Msa0371170:CDS
ATTAGGAAACCCTAATTTCA+TGG 0.397565 3_1:+69228107 Msa0371170:CDS
CGACACGTCATGGAAGCTTT+AGG 0.404008 3_1:+69228903 Msa0371170:three_prime_UTR
AGTGACAATAGTTTAGGGTT+TGG 0.405871 3_1:-69228468 None:intergenic
GTTGTGTTGTGGTTGCTACA+TGG 0.420708 3_1:-69226888 None:intergenic
TTTGGTGGAATGTCATTTGA+TGG 0.425628 3_1:+69228342 Msa0371170:CDS
TCCTCATCATTAGCATCATA+TGG 0.425855 3_1:-69228420 None:intergenic
GTAAGTTAGAAGGCATAATT+GGG 0.426365 3_1:+69228193 Msa0371170:CDS
GCGTTTCTTTCTATAAATCA+AGG 0.427761 3_1:+69228751 Msa0371170:three_prime_UTR
TGTTAAGTGAGAAGAGATAG+AGG 0.437368 3_1:-69226946 None:intergenic
TATGAAGAAAGTGATTGATT+AGG 0.437988 3_1:-69228648 None:intergenic
TAGCTCCAAATAAGTTACTT+AGG 0.442973 3_1:-69228077 None:intergenic
AGGTGAGAGAATTGCACATC+AGG 0.445358 3_1:-69228057 None:intergenic
ATCTGCAGATCATTGGTTGC+AGG 0.446436 3_1:+69227151 Msa0371170:CDS
ATGTAACATCGAGGAAGATA+TGG 0.449127 3_1:+69228942 Msa0371170:three_prime_UTR
ATATACATAAAGTCTTTGTA+TGG 0.454485 3_1:+69228686 Msa0371170:three_prime_UTR
TCTTAGCCTCCTCTCTATCA+TGG 0.458753 3_1:-69227743 None:intergenic
GATCAAGGTTGCTCTGATGC+TGG 0.462649 3_1:+69228504 Msa0371170:CDS
ATGATGGAAAGTAAGTTAGA+AGG 0.467778 3_1:+69228183 Msa0371170:CDS
TGGAATCATCTGCAGATCAT+TGG 0.469488 3_1:+69227144 Msa0371170:CDS
GAGCTTAGCCGTTGATCAAA+GGG 0.477519 3_1:-69228596 None:intergenic
AGTGGTATGATGAATGGTTA+TGG 0.480178 3_1:+69228558 Msa0371170:CDS
TTCACACTCGACCCATCTCT+TGG 0.480929 3_1:-69228801 None:intergenic
AATATGGGTGTTGGGATTGG+AGG 0.481246 3_1:+69228270 Msa0371170:CDS
CTTCTCTCTTTGCAATGCAA+TGG 0.481948 3_1:+69227004 Msa0371170:five_prime_UTR
GGTTGCTCTGATGCTGGAAA+AGG 0.482324 3_1:+69228510 Msa0371170:CDS
GGCACAATTCACGATGAGTC+AGG 0.484101 3_1:+69227664 Msa0371170:CDS
AGAAGAGAAGAAAATGAAAG+AGG 0.486968 3_1:-69226986 None:intergenic
GATTCATCTTCACCAATGTC+TGG 0.489933 3_1:+69227691 Msa0371170:CDS
CATAAAGTCTTTGTATGGGA+GGG 0.490896 3_1:+69228691 Msa0371170:three_prime_UTR
CTTGATCACAACTCTGAGCT+TGG 0.491446 3_1:+69227083 Msa0371170:five_prime_UTR
GAGAACAAGTATAGCAATGT+TGG 0.493849 3_1:+69228129 Msa0371170:CDS
CTCCTCTCTATCATGGATGA+TGG 0.495201 3_1:-69227736 None:intergenic
ACTTCTGCAAGACTTGTAGA+AGG 0.495701 3_1:+69227860 Msa0371170:CDS
AGAGCTTAGCCGTTGATCAA+AGG 0.500555 3_1:-69228597 None:intergenic
CTAAACTATTGTCACTTGAA+TGG 0.500804 3_1:+69228475 Msa0371170:CDS
CTTGAATGGCAGCAAGATCA+AGG 0.502791 3_1:+69228489 Msa0371170:CDS
ATGAATATGAATATGGGTGT+TGG 0.503188 3_1:+69228261 Msa0371170:CDS
AGTCATTTGGATATGGATCA+TGG 0.505387 3_1:+69228535 Msa0371170:CDS
GTGACATGCTAACATGTTCA+AGG 0.508689 3_1:+69227713 Msa0371170:CDS
TCTTTGTGTGCGACACGTCA+TGG 0.513722 3_1:+69228893 Msa0371170:three_prime_UTR
TGAATATGAATATGGGTGTT+GGG 0.514370 3_1:+69228262 Msa0371170:CDS
ATCATGAAGTCAATAGGCCT+AGG 0.516098 3_1:-69228165 None:intergenic
ACATATTTATATAATCCAAA+AGG 0.528989 3_1:-69228865 None:intergenic
TTGTGATCAAGCAGTGTAGT+TGG 0.535204 3_1:-69227071 None:intergenic
CGTTTCTTTCTATAAATCAA+GGG 0.539763 3_1:+69228752 Msa0371170:three_prime_UTR
TTGTGTTGTGGTTGCTACAT+GGG 0.541396 3_1:-69226887 None:intergenic
CTACTGAATTAACCAAGAGA+TGG 0.548579 3_1:+69228789 Msa0371170:three_prime_UTR
CTTAGGAACATCCCTGTTGG+TGG 0.550577 3_1:+69227904 Msa0371170:CDS
CAAGTCTTGCAGAAGTACCT+TGG 0.558008 3_1:-69227853 None:intergenic
AGGAACATCCCTGTTGGTGG+AGG 0.558859 3_1:+69227907 Msa0371170:CDS
TATACATAAAGTCTTTGTAT+GGG 0.559157 3_1:+69228687 Msa0371170:three_prime_UTR
CATGTGTTTGTGTTGTGTTG+TGG 0.559484 3_1:-69226899 None:intergenic
AGAGTCCAAATCTACTGCCT+TGG 0.559695 3_1:+69228835 Msa0371170:three_prime_UTR
TACTGAATTAACCAAGAGAT+GGG 0.562851 3_1:+69228790 Msa0371170:three_prime_UTR
ACAACAAACCCTTTGATCAA+CGG 0.565654 3_1:+69228588 Msa0371170:CDS
ATATGATGAATGGACAAAAT+GGG 0.566744 3_1:+69228295 Msa0371170:CDS
ATTGGAGGAGATATGATGAA+TGG 0.570060 3_1:+69228285 Msa0371170:CDS
ACATAAAGTCTTTGTATGGG+AGG 0.575556 3_1:+69228690 Msa0371170:three_prime_UTR
ACCTATCCCTAAAATGTCCA+AGG 0.579764 3_1:+69227776 Msa0371170:CDS
GATCATATGAATATGAATAT+GGG 0.580380 3_1:+69228255 Msa0371170:CDS
TAGGCCTATTGACTTCATGA+TGG 0.581168 3_1:+69228167 Msa0371170:CDS
TCATGGAGTGGTATGATGAA+TGG 0.582721 3_1:+69228552 Msa0371170:CDS
TTGTGGTTGCTACATGGGAC+GGG 0.587904 3_1:-69226882 None:intergenic
TGTAGAAGGTATTGGACCAA+AGG 0.594254 3_1:+69227874 Msa0371170:CDS
AATTCACGATGAGTCAGGAA+TGG 0.596611 3_1:+69227669 Msa0371170:CDS
GGACCAAAGGAGGAACACTT+AGG 0.599656 3_1:+69227887 Msa0371170:CDS
AATGCATGATGAAAATTCTG+AGG 0.599697 3_1:-69228321 None:intergenic
AGGAAGGTACATGATGTGGT+TGG 0.607867 3_1:-69227999 None:intergenic
GGTGGAATGTCATTTGATGG+AGG 0.611132 3_1:+69228345 Msa0371170:CDS
TCATGAAGTCAATAGGCCTA+GGG 0.612063 3_1:-69228164 None:intergenic
GGCCATCATCCATGATAGAG+AGG 0.614387 3_1:+69227734 Msa0371170:CDS
GATGGAGGAAACAATAGCAA+TGG 0.614470 3_1:+69228360 Msa0371170:CDS
GTTTCTTTCTATAAATCAAG+GGG 0.615214 3_1:+69228753 Msa0371170:three_prime_UTR
GGTGAGAGAATTGCACATCA+GGG 0.615522 3_1:-69228056 None:intergenic
GTTGTGGTTGCTACATGGGA+CGG 0.616180 3_1:-69226883 None:intergenic
TTGGCATGCTTGAAAACCCT+AGG 0.618350 3_1:+69228148 Msa0371170:CDS
AGAAGGTATTGGACCAAAGG+AGG 0.622045 3_1:+69227877 Msa0371170:CDS
GTTAGCATGTCACCAGACAT+TGG 0.624948 3_1:-69227703 None:intergenic
TTCTACAGCCTCCACCAACA+GGG 0.626747 3_1:-69227915 None:intergenic
TGGTAGGAAGGTACATGATG+TGG 0.632743 3_1:-69228003 None:intergenic
ACACTTAGGAACATCCCTGT+TGG 0.646210 3_1:+69227901 Msa0371170:CDS
TTTGGATATGGATCATGGAG+TGG 0.646639 3_1:+69228540 Msa0371170:CDS
GTTGATCAAAGGGTTTGTTG+TGG 0.647747 3_1:-69228586 None:intergenic
TTTAGGGATAGGTCATGTGG+TGG 0.663306 3_1:-69227766 None:intergenic
ACTACAGTCTCTCTCAGCCA+AGG 0.663924 3_1:+69227836 Msa0371170:CDS
GTGTGAGTTGAATCACACCT+TGG 0.665322 3_1:-69227793 None:intergenic
TCCATATGATGCTAATGATG+AGG 0.665364 3_1:+69228419 Msa0371170:CDS
CATCATCCATGATAGAGAGG+AGG 0.679330 3_1:+69227737 Msa0371170:CDS
ATCCAAAAGGAAACACACCA+AGG 0.706145 3_1:-69228852 None:intergenic
TATGCTGTAATGTAACATCG+AGG 0.752266 3_1:+69228933 Msa0371170:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AGGAATTTTGATAATTATTT+TGG + chr3_1:69228225-69228244 Msa0371170:CDS 15.0%
!! ACATATTTATATAATCCAAA+AGG - chr3_1:69228868-69228887 None:intergenic 15.0%
!!! AGGAATTTTGATAATTATTT+TGG + chr3_1:69228225-69228244 Msa0371170:CDS 15.0%
!! ACATATTTATATAATCCAAA+AGG - chr3_1:69228868-69228887 None:intergenic 15.0%
!! TAAACAAAATGAAAGGAAAA+TGG - chr3_1:69227201-69227220 None:intergenic 20.0%
!! AACATGATAAACAAAATGAA+AGG - chr3_1:69227208-69227227 None:intergenic 20.0%
!! ACATGCATTAATCAAATTAA+TGG + chr3_1:69227242-69227261 Msa0371170:intron 20.0%
!! AAGCTAAGAAAAACAAAATT+AGG + chr3_1:69227490-69227509 Msa0371170:intron 20.0%
!! AGCTAAGAAAAACAAAATTA+GGG + chr3_1:69227491-69227510 Msa0371170:intron 20.0%
!!! TTCTTTTATACAAAATTGTC+AGG + chr3_1:69227642-69227661 Msa0371170:intron 20.0%
!!! TCTTTTATACAAAATTGTCA+GGG + chr3_1:69227643-69227662 Msa0371170:intron 20.0%
!!! TAAGTGATCATTTGATTTTT+TGG - chr3_1:69227959-69227978 None:intergenic 20.0%
!! TGATCATATGAATATGAATA+TGG + chr3_1:69228254-69228273 Msa0371170:CDS 20.0%
!! GATCATATGAATATGAATAT+GGG + chr3_1:69228255-69228274 Msa0371170:CDS 20.0%
!! ATATACATAAAGTCTTTGTA+TGG + chr3_1:69228686-69228705 Msa0371170:three_prime_UTR 20.0%
!! TATACATAAAGTCTTTGTAT+GGG + chr3_1:69228687-69228706 Msa0371170:three_prime_UTR 20.0%
!! TAAACAAAATGAAAGGAAAA+TGG - chr3_1:69227201-69227220 None:intergenic 20.0%
!! AACATGATAAACAAAATGAA+AGG - chr3_1:69227208-69227227 None:intergenic 20.0%
!! ACATGCATTAATCAAATTAA+TGG + chr3_1:69227242-69227261 Msa0371170:intron 20.0%
!! AAGCTAAGAAAAACAAAATT+AGG + chr3_1:69227490-69227509 Msa0371170:intron 20.0%
!! AGCTAAGAAAAACAAAATTA+GGG + chr3_1:69227491-69227510 Msa0371170:intron 20.0%
!!! TTCTTTTATACAAAATTGTC+AGG + chr3_1:69227642-69227661 Msa0371170:intron 20.0%
!!! TCTTTTATACAAAATTGTCA+GGG + chr3_1:69227643-69227662 Msa0371170:intron 20.0%
!!! TAAGTGATCATTTGATTTTT+TGG - chr3_1:69227959-69227978 None:intergenic 20.0%
!! TGATCATATGAATATGAATA+TGG + chr3_1:69228254-69228273 Msa0371170:CDS 20.0%
!! GATCATATGAATATGAATAT+GGG + chr3_1:69228255-69228274 Msa0371170:CDS 20.0%
!! ATATACATAAAGTCTTTGTA+TGG + chr3_1:69228686-69228705 Msa0371170:three_prime_UTR 20.0%
!! TATACATAAAGTCTTTGTAT+GGG + chr3_1:69228687-69228706 Msa0371170:three_prime_UTR 20.0%
! AAATTAATGGTGTAGTAGTT+TGG + chr3_1:69227255-69227274 Msa0371170:intron 25.0%
!! GAAAAGAGAATTTTATGCTT+AGG + chr3_1:69227277-69227296 Msa0371170:intron 25.0%
!!! TTCACTTTTAATCATGAGAT+CGG - chr3_1:69227445-69227464 None:intergenic 25.0%
!!! TGGAATTGGATTATTTTACA+TGG - chr3_1:69227562-69227581 None:intergenic 25.0%
!!! TTAATTTGTCTTGTTGGAAT+TGG - chr3_1:69227576-69227595 None:intergenic 25.0%
!!! AATGTGTTAATTTGTCTTGT+TGG - chr3_1:69227582-69227601 None:intergenic 25.0%
! ATATGATGAATGGACAAAAT+GGG + chr3_1:69228295-69228314 Msa0371170:CDS 25.0%
! ATTCAAGTGACAATAGTTTA+GGG - chr3_1:69228476-69228495 None:intergenic 25.0%
! TATGAAGAAAGTGATTGATT+AGG - chr3_1:69228651-69228670 None:intergenic 25.0%
! CGTTTCTTTCTATAAATCAA+GGG + chr3_1:69228752-69228771 Msa0371170:three_prime_UTR 25.0%
! GTTTCTTTCTATAAATCAAG+GGG + chr3_1:69228753-69228772 Msa0371170:three_prime_UTR 25.0%
!!! ATTTTTTGTCTCTATGTTTG+TGG + chr3_1:69229027-69229046 Msa0371170:three_prime_UTR 25.0%
!!! TTTTTTGTCTCTATGTTTGT+GGG + chr3_1:69229028-69229047 Msa0371170:three_prime_UTR 25.0%
! AAATTAATGGTGTAGTAGTT+TGG + chr3_1:69227255-69227274 Msa0371170:intron 25.0%
!! GAAAAGAGAATTTTATGCTT+AGG + chr3_1:69227277-69227296 Msa0371170:intron 25.0%
!!! TTCACTTTTAATCATGAGAT+CGG - chr3_1:69227445-69227464 None:intergenic 25.0%
!!! TGGAATTGGATTATTTTACA+TGG - chr3_1:69227562-69227581 None:intergenic 25.0%
!!! TTAATTTGTCTTGTTGGAAT+TGG - chr3_1:69227576-69227595 None:intergenic 25.0%
!!! AATGTGTTAATTTGTCTTGT+TGG - chr3_1:69227582-69227601 None:intergenic 25.0%
! ATATGATGAATGGACAAAAT+GGG + chr3_1:69228295-69228314 Msa0371170:CDS 25.0%
! ATTCAAGTGACAATAGTTTA+GGG - chr3_1:69228476-69228495 None:intergenic 25.0%
! TATGAAGAAAGTGATTGATT+AGG - chr3_1:69228651-69228670 None:intergenic 25.0%
! CGTTTCTTTCTATAAATCAA+GGG + chr3_1:69228752-69228771 Msa0371170:three_prime_UTR 25.0%
! GTTTCTTTCTATAAATCAAG+GGG + chr3_1:69228753-69228772 Msa0371170:three_prime_UTR 25.0%
!!! ATTTTTTGTCTCTATGTTTG+TGG + chr3_1:69229027-69229046 Msa0371170:three_prime_UTR 25.0%
!!! TTTTTTGTCTCTATGTTTGT+GGG + chr3_1:69229028-69229047 Msa0371170:three_prime_UTR 25.0%
AGAAGAGAAGAAAATGAAAG+AGG - chr3_1:69226989-69227008 None:intergenic 30.0%
AAAATGGTATACAATGTGCA+TGG - chr3_1:69227185-69227204 None:intergenic 30.0%
CATGATCATTTGAATTGCTA+TGG + chr3_1:69227352-69227371 Msa0371170:intron 30.0%
GATCTCATGATTAAAAGTGA+AGG + chr3_1:69227444-69227463 Msa0371170:intron 30.0%
GTTGTTGTAATAGCAGAATT+TGG - chr3_1:69227818-69227837 None:intergenic 30.0%
AAGAAAGCTGAAGATCTTTA+GGG - chr3_1:69228035-69228054 None:intergenic 30.0%
AAAGAAAGCTGAAGATCTTT+AGG - chr3_1:69228036-69228055 None:intergenic 30.0%
TCTCACCTAAGTAACTTATT+TGG + chr3_1:69228072-69228091 Msa0371170:CDS 30.0%
TAGCTCCAAATAAGTTACTT+AGG - chr3_1:69228080-69228099 None:intergenic 30.0%
! AGTAACTTATTTGGAGCTAA+TGG + chr3_1:69228081-69228100 Msa0371170:CDS 30.0%
ATTAGGAAACCCTAATTTCA+TGG + chr3_1:69228107-69228126 Msa0371170:CDS 30.0%
ACTTGTTCTCCATGAAATTA+GGG - chr3_1:69228119-69228138 None:intergenic 30.0%
TACTTGTTCTCCATGAAATT+AGG - chr3_1:69228120-69228139 None:intergenic 30.0%
! ATGATGGAAAGTAAGTTAGA+AGG + chr3_1:69228183-69228202 Msa0371170:CDS 30.0%
! AGTAAGTTAGAAGGCATAAT+TGG + chr3_1:69228192-69228211 Msa0371170:CDS 30.0%
! GTAAGTTAGAAGGCATAATT+GGG + chr3_1:69228193-69228212 Msa0371170:CDS 30.0%
ATGAATATGAATATGGGTGT+TGG + chr3_1:69228261-69228280 Msa0371170:CDS 30.0%
TGAATATGAATATGGGTGTT+GGG + chr3_1:69228262-69228281 Msa0371170:CDS 30.0%
GATATGATGAATGGACAAAA+TGG + chr3_1:69228294-69228313 Msa0371170:CDS 30.0%
AATGCATGATGAAAATTCTG+AGG - chr3_1:69228324-69228343 None:intergenic 30.0%
! CAGAATTTTCATCATGCATT+TGG + chr3_1:69228324-69228343 Msa0371170:CDS 30.0%
! AATTTTCATCATGCATTTGG+TGG + chr3_1:69228327-69228346 Msa0371170:CDS 30.0%
TAGCAATGGTGCTTATTTAA+TGG + chr3_1:69228374-69228393 Msa0371170:CDS 30.0%
CATTCAAGTGACAATAGTTT+AGG - chr3_1:69228477-69228496 None:intergenic 30.0%
! CTAAACTATTGTCACTTGAA+TGG + chr3_1:69228475-69228494 Msa0371170:CDS 30.0%
AAAGTGATTGATTAGGTCAT+TGG - chr3_1:69228644-69228663 None:intergenic 30.0%
GCGTTTCTTTCTATAAATCA+AGG + chr3_1:69228751-69228770 Msa0371170:three_prime_UTR 30.0%
TACTGAATTAACCAAGAGAT+GGG + chr3_1:69228790-69228809 Msa0371170:three_prime_UTR 30.0%
! TTTTTGTCTCTATGTTTGTG+GGG + chr3_1:69229029-69229048 Msa0371170:three_prime_UTR 30.0%
AGAAGAGAAGAAAATGAAAG+AGG - chr3_1:69226989-69227008 None:intergenic 30.0%
AAAATGGTATACAATGTGCA+TGG - chr3_1:69227185-69227204 None:intergenic 30.0%
CATGATCATTTGAATTGCTA+TGG + chr3_1:69227352-69227371 Msa0371170:intron 30.0%
GATCTCATGATTAAAAGTGA+AGG + chr3_1:69227444-69227463 Msa0371170:intron 30.0%
GTTGTTGTAATAGCAGAATT+TGG - chr3_1:69227818-69227837 None:intergenic 30.0%
AAGAAAGCTGAAGATCTTTA+GGG - chr3_1:69228035-69228054 None:intergenic 30.0%
AAAGAAAGCTGAAGATCTTT+AGG - chr3_1:69228036-69228055 None:intergenic 30.0%
TCTCACCTAAGTAACTTATT+TGG + chr3_1:69228072-69228091 Msa0371170:CDS 30.0%
TAGCTCCAAATAAGTTACTT+AGG - chr3_1:69228080-69228099 None:intergenic 30.0%
! AGTAACTTATTTGGAGCTAA+TGG + chr3_1:69228081-69228100 Msa0371170:CDS 30.0%
ATTAGGAAACCCTAATTTCA+TGG + chr3_1:69228107-69228126 Msa0371170:CDS 30.0%
ACTTGTTCTCCATGAAATTA+GGG - chr3_1:69228119-69228138 None:intergenic 30.0%
TACTTGTTCTCCATGAAATT+AGG - chr3_1:69228120-69228139 None:intergenic 30.0%
! ATGATGGAAAGTAAGTTAGA+AGG + chr3_1:69228183-69228202 Msa0371170:CDS 30.0%
! AGTAAGTTAGAAGGCATAAT+TGG + chr3_1:69228192-69228211 Msa0371170:CDS 30.0%
! GTAAGTTAGAAGGCATAATT+GGG + chr3_1:69228193-69228212 Msa0371170:CDS 30.0%
ATGAATATGAATATGGGTGT+TGG + chr3_1:69228261-69228280 Msa0371170:CDS 30.0%
TGAATATGAATATGGGTGTT+GGG + chr3_1:69228262-69228281 Msa0371170:CDS 30.0%
GATATGATGAATGGACAAAA+TGG + chr3_1:69228294-69228313 Msa0371170:CDS 30.0%
AATGCATGATGAAAATTCTG+AGG - chr3_1:69228324-69228343 None:intergenic 30.0%
! CAGAATTTTCATCATGCATT+TGG + chr3_1:69228324-69228343 Msa0371170:CDS 30.0%
! AATTTTCATCATGCATTTGG+TGG + chr3_1:69228327-69228346 Msa0371170:CDS 30.0%
TAGCAATGGTGCTTATTTAA+TGG + chr3_1:69228374-69228393 Msa0371170:CDS 30.0%
CATTCAAGTGACAATAGTTT+AGG - chr3_1:69228477-69228496 None:intergenic 30.0%
! CTAAACTATTGTCACTTGAA+TGG + chr3_1:69228475-69228494 Msa0371170:CDS 30.0%
AAAGTGATTGATTAGGTCAT+TGG - chr3_1:69228644-69228663 None:intergenic 30.0%
GCGTTTCTTTCTATAAATCA+AGG + chr3_1:69228751-69228770 Msa0371170:three_prime_UTR 30.0%
TACTGAATTAACCAAGAGAT+GGG + chr3_1:69228790-69228809 Msa0371170:three_prime_UTR 30.0%
! TTTTTGTCTCTATGTTTGTG+GGG + chr3_1:69229029-69229048 Msa0371170:three_prime_UTR 30.0%
TGTTAAGTGAGAAGAGATAG+AGG - chr3_1:69226949-69226968 None:intergenic 35.0%
! ATCACACCTTGGACATTTTA+GGG - chr3_1:69227785-69227804 None:intergenic 35.0%
! AATCACACCTTGGACATTTT+AGG - chr3_1:69227786-69227805 None:intergenic 35.0%
!!! ATCTTTAGGGTTTTGATGGT+AGG - chr3_1:69228022-69228041 None:intergenic 35.0%
!!! GAAGATCTTTAGGGTTTTGA+TGG - chr3_1:69228026-69228045 None:intergenic 35.0%
GAGAACAAGTATAGCAATGT+TGG + chr3_1:69228129-69228148 Msa0371170:CDS 35.0%
CTTTCCATCATGAAGTCAAT+AGG - chr3_1:69228174-69228193 None:intergenic 35.0%
ATTGGAGGAGATATGATGAA+TGG + chr3_1:69228285-69228304 Msa0371170:CDS 35.0%
! TTTGGTGGAATGTCATTTGA+TGG + chr3_1:69228342-69228361 Msa0371170:CDS 35.0%
TCCATATGATGCTAATGATG+AGG + chr3_1:69228419-69228438 Msa0371170:CDS 35.0%
TCCTCATCATTAGCATCATA+TGG - chr3_1:69228423-69228442 None:intergenic 35.0%
! AGTGACAATAGTTTAGGGTT+TGG - chr3_1:69228471-69228490 None:intergenic 35.0%
AAAGGTCAGTCATTTGGATA+TGG + chr3_1:69228528-69228547 Msa0371170:CDS 35.0%
AGTCATTTGGATATGGATCA+TGG + chr3_1:69228535-69228554 Msa0371170:CDS 35.0%
AGTGGTATGATGAATGGTTA+TGG + chr3_1:69228558-69228577 Msa0371170:CDS 35.0%
ACAACAAACCCTTTGATCAA+CGG + chr3_1:69228588-69228607 Msa0371170:CDS 35.0%
ACATAAAGTCTTTGTATGGG+AGG + chr3_1:69228690-69228709 Msa0371170:three_prime_UTR 35.0%
CATAAAGTCTTTGTATGGGA+GGG + chr3_1:69228691-69228710 Msa0371170:three_prime_UTR 35.0%
CTACTGAATTAACCAAGAGA+TGG + chr3_1:69228789-69228808 Msa0371170:three_prime_UTR 35.0%
TATGCTGTAATGTAACATCG+AGG + chr3_1:69228933-69228952 Msa0371170:three_prime_UTR 35.0%
ATGTAACATCGAGGAAGATA+TGG + chr3_1:69228942-69228961 Msa0371170:three_prime_UTR 35.0%
TGTTAAGTGAGAAGAGATAG+AGG - chr3_1:69226949-69226968 None:intergenic 35.0%
! ATCACACCTTGGACATTTTA+GGG - chr3_1:69227785-69227804 None:intergenic 35.0%
! AATCACACCTTGGACATTTT+AGG - chr3_1:69227786-69227805 None:intergenic 35.0%
!!! ATCTTTAGGGTTTTGATGGT+AGG - chr3_1:69228022-69228041 None:intergenic 35.0%
!!! GAAGATCTTTAGGGTTTTGA+TGG - chr3_1:69228026-69228045 None:intergenic 35.0%
GAGAACAAGTATAGCAATGT+TGG + chr3_1:69228129-69228148 Msa0371170:CDS 35.0%
CTTTCCATCATGAAGTCAAT+AGG - chr3_1:69228174-69228193 None:intergenic 35.0%
ATTGGAGGAGATATGATGAA+TGG + chr3_1:69228285-69228304 Msa0371170:CDS 35.0%
! TTTGGTGGAATGTCATTTGA+TGG + chr3_1:69228342-69228361 Msa0371170:CDS 35.0%
TCCATATGATGCTAATGATG+AGG + chr3_1:69228419-69228438 Msa0371170:CDS 35.0%
TCCTCATCATTAGCATCATA+TGG - chr3_1:69228423-69228442 None:intergenic 35.0%
! AGTGACAATAGTTTAGGGTT+TGG - chr3_1:69228471-69228490 None:intergenic 35.0%
AAAGGTCAGTCATTTGGATA+TGG + chr3_1:69228528-69228547 Msa0371170:CDS 35.0%
AGTCATTTGGATATGGATCA+TGG + chr3_1:69228535-69228554 Msa0371170:CDS 35.0%
AGTGGTATGATGAATGGTTA+TGG + chr3_1:69228558-69228577 Msa0371170:CDS 35.0%
ACAACAAACCCTTTGATCAA+CGG + chr3_1:69228588-69228607 Msa0371170:CDS 35.0%
ACATAAAGTCTTTGTATGGG+AGG + chr3_1:69228690-69228709 Msa0371170:three_prime_UTR 35.0%
CATAAAGTCTTTGTATGGGA+GGG + chr3_1:69228691-69228710 Msa0371170:three_prime_UTR 35.0%
CTACTGAATTAACCAAGAGA+TGG + chr3_1:69228789-69228808 Msa0371170:three_prime_UTR 35.0%
TATGCTGTAATGTAACATCG+AGG + chr3_1:69228933-69228952 Msa0371170:three_prime_UTR 35.0%
ATGTAACATCGAGGAAGATA+TGG + chr3_1:69228942-69228961 Msa0371170:three_prime_UTR 35.0%
TTGTGTTGTGGTTGCTACAT+GGG - chr3_1:69226890-69226909 None:intergenic 40.0%
CATGTGTTTGTGTTGTGTTG+TGG - chr3_1:69226902-69226921 None:intergenic 40.0%
CTTCTCTCTTTGCAATGCAA+TGG + chr3_1:69227004-69227023 Msa0371170:five_prime_UTR 40.0%
TTGTGATCAAGCAGTGTAGT+TGG - chr3_1:69227074-69227093 None:intergenic 40.0%
!! TCTGAGCTTGGCTTTTGAAT+GGG + chr3_1:69227095-69227114 Msa0371170:exon 40.0%
TTCTCTTCACGTCTGCAATA+TGG + chr3_1:69227124-69227143 Msa0371170:CDS 40.0%
TGGAATCATCTGCAGATCAT+TGG + chr3_1:69227144-69227163 Msa0371170:CDS 40.0%
AATTCACGATGAGTCAGGAA+TGG + chr3_1:69227669-69227688 Msa0371170:CDS 40.0%
GATTCATCTTCACCAATGTC+TGG + chr3_1:69227691-69227710 Msa0371170:CDS 40.0%
GTGACATGCTAACATGTTCA+AGG + chr3_1:69227713-69227732 Msa0371170:CDS 40.0%
!! CATTTTAGGGATAGGTCATG+TGG - chr3_1:69227772-69227791 None:intergenic 40.0%
ACCTATCCCTAAAATGTCCA+AGG + chr3_1:69227776-69227795 Msa0371170:CDS 40.0%
!! ACCTTGGACATTTTAGGGAT+AGG - chr3_1:69227780-69227799 None:intergenic 40.0%
ACTTCTGCAAGACTTGTAGA+AGG + chr3_1:69227860-69227879 Msa0371170:CDS 40.0%
! GCAAGACTTGTAGAAGGTAT+TGG + chr3_1:69227866-69227885 Msa0371170:CDS 40.0%
!! TGTAGAAGGTATTGGACCAA+AGG + chr3_1:69227874-69227893 Msa0371170:CDS 40.0%
!! TTAGGGTTTTGATGGTAGGA+AGG - chr3_1:69228018-69228037 None:intergenic 40.0%
! TTTGGAGCTAATGGAGCATT+AGG + chr3_1:69228090-69228109 Msa0371170:CDS 40.0%
TCATGAAGTCAATAGGCCTA+GGG - chr3_1:69228167-69228186 None:intergenic 40.0%
ATCATGAAGTCAATAGGCCT+AGG - chr3_1:69228168-69228187 None:intergenic 40.0%
!! TAGGCCTATTGACTTCATGA+TGG + chr3_1:69228167-69228186 Msa0371170:CDS 40.0%
GCATAATTGGGAGTAGTTCT+AGG + chr3_1:69228205-69228224 Msa0371170:CDS 40.0%
!! ATGAATATGGGTGTTGGGAT+TGG + chr3_1:69228267-69228286 Msa0371170:CDS 40.0%
GATGGAGGAAACAATAGCAA+TGG + chr3_1:69228360-69228379 Msa0371170:CDS 40.0%
TTTGGATATGGATCATGGAG+TGG + chr3_1:69228540-69228559 Msa0371170:CDS 40.0%
TCATGGAGTGGTATGATGAA+TGG + chr3_1:69228552-69228571 Msa0371170:CDS 40.0%
!! GTTGATCAAAGGGTTTGTTG+TGG - chr3_1:69228589-69228608 None:intergenic 40.0%
ATCCAAAAGGAAACACACCA+AGG - chr3_1:69228855-69228874 None:intergenic 40.0%
TTGTGTTGTGGTTGCTACAT+GGG - chr3_1:69226890-69226909 None:intergenic 40.0%
CATGTGTTTGTGTTGTGTTG+TGG - chr3_1:69226902-69226921 None:intergenic 40.0%
CTTCTCTCTTTGCAATGCAA+TGG + chr3_1:69227004-69227023 Msa0371170:five_prime_UTR 40.0%
TTGTGATCAAGCAGTGTAGT+TGG - chr3_1:69227074-69227093 None:intergenic 40.0%
!! TCTGAGCTTGGCTTTTGAAT+GGG + chr3_1:69227095-69227114 Msa0371170:exon 40.0%
TTCTCTTCACGTCTGCAATA+TGG + chr3_1:69227124-69227143 Msa0371170:CDS 40.0%
TGGAATCATCTGCAGATCAT+TGG + chr3_1:69227144-69227163 Msa0371170:CDS 40.0%
AATTCACGATGAGTCAGGAA+TGG + chr3_1:69227669-69227688 Msa0371170:CDS 40.0%
GATTCATCTTCACCAATGTC+TGG + chr3_1:69227691-69227710 Msa0371170:CDS 40.0%
GTGACATGCTAACATGTTCA+AGG + chr3_1:69227713-69227732 Msa0371170:CDS 40.0%
!! CATTTTAGGGATAGGTCATG+TGG - chr3_1:69227772-69227791 None:intergenic 40.0%
ACCTATCCCTAAAATGTCCA+AGG + chr3_1:69227776-69227795 Msa0371170:CDS 40.0%
!! ACCTTGGACATTTTAGGGAT+AGG - chr3_1:69227780-69227799 None:intergenic 40.0%
ACTTCTGCAAGACTTGTAGA+AGG + chr3_1:69227860-69227879 Msa0371170:CDS 40.0%
! GCAAGACTTGTAGAAGGTAT+TGG + chr3_1:69227866-69227885 Msa0371170:CDS 40.0%
!! TGTAGAAGGTATTGGACCAA+AGG + chr3_1:69227874-69227893 Msa0371170:CDS 40.0%
!! TTAGGGTTTTGATGGTAGGA+AGG - chr3_1:69228018-69228037 None:intergenic 40.0%
! TTTGGAGCTAATGGAGCATT+AGG + chr3_1:69228090-69228109 Msa0371170:CDS 40.0%
TCATGAAGTCAATAGGCCTA+GGG - chr3_1:69228167-69228186 None:intergenic 40.0%
ATCATGAAGTCAATAGGCCT+AGG - chr3_1:69228168-69228187 None:intergenic 40.0%
!! TAGGCCTATTGACTTCATGA+TGG + chr3_1:69228167-69228186 Msa0371170:CDS 40.0%
GCATAATTGGGAGTAGTTCT+AGG + chr3_1:69228205-69228224 Msa0371170:CDS 40.0%
!! ATGAATATGGGTGTTGGGAT+TGG + chr3_1:69228267-69228286 Msa0371170:CDS 40.0%
GATGGAGGAAACAATAGCAA+TGG + chr3_1:69228360-69228379 Msa0371170:CDS 40.0%
TTTGGATATGGATCATGGAG+TGG + chr3_1:69228540-69228559 Msa0371170:CDS 40.0%
TCATGGAGTGGTATGATGAA+TGG + chr3_1:69228552-69228571 Msa0371170:CDS 40.0%
!! GTTGATCAAAGGGTTTGTTG+TGG - chr3_1:69228589-69228608 None:intergenic 40.0%
ATCCAAAAGGAAACACACCA+AGG - chr3_1:69228855-69228874 None:intergenic 40.0%
GTTGTGTTGTGGTTGCTACA+TGG - chr3_1:69226891-69226910 None:intergenic 45.0%
CTTGATCACAACTCTGAGCT+TGG + chr3_1:69227083-69227102 Msa0371170:five_prime_UTR 45.0%
!! CTCTGAGCTTGGCTTTTGAA+TGG + chr3_1:69227094-69227113 Msa0371170:exon 45.0%
! ATCTGCAGATCATTGGTTGC+AGG + chr3_1:69227151-69227170 Msa0371170:CDS 45.0%
GTTAGCATGTCACCAGACAT+TGG - chr3_1:69227706-69227725 None:intergenic 45.0%
CTCCTCTCTATCATGGATGA+TGG - chr3_1:69227739-69227758 None:intergenic 45.0%
CATCATCCATGATAGAGAGG+AGG + chr3_1:69227737-69227756 Msa0371170:CDS 45.0%
TCTTAGCCTCCTCTCTATCA+TGG - chr3_1:69227746-69227765 None:intergenic 45.0%
TTTAGGGATAGGTCATGTGG+TGG - chr3_1:69227769-69227788 None:intergenic 45.0%
! GTGTGAGTTGAATCACACCT+TGG - chr3_1:69227796-69227815 None:intergenic 45.0%
!! CAAGTCTTGCAGAAGTACCT+TGG - chr3_1:69227856-69227875 None:intergenic 45.0%
!! AGAAGGTATTGGACCAAAGG+AGG + chr3_1:69227877-69227896 Msa0371170:CDS 45.0%
GTTCCTAAGTGTTCCTCCTT+TGG - chr3_1:69227893-69227912 None:intergenic 45.0%
ACACTTAGGAACATCCCTGT+TGG + chr3_1:69227901-69227920 Msa0371170:CDS 45.0%
! AGGAAGGTACATGATGTGGT+TGG - chr3_1:69228002-69228021 None:intergenic 45.0%
! TGGTAGGAAGGTACATGATG+TGG - chr3_1:69228006-69228025 None:intergenic 45.0%
GGTGAGAGAATTGCACATCA+GGG - chr3_1:69228059-69228078 None:intergenic 45.0%
AGGTGAGAGAATTGCACATC+AGG - chr3_1:69228060-69228079 None:intergenic 45.0%
TTGGCATGCTTGAAAACCCT+AGG + chr3_1:69228148-69228167 Msa0371170:CDS 45.0%
!! AATATGGGTGTTGGGATTGG+AGG + chr3_1:69228270-69228289 Msa0371170:CDS 45.0%
! GGTGGAATGTCATTTGATGG+AGG + chr3_1:69228345-69228364 Msa0371170:CDS 45.0%
CTTGAATGGCAGCAAGATCA+AGG + chr3_1:69228489-69228508 Msa0371170:CDS 45.0%
GCTGGAAAAGGTCAGTCATT+TGG + chr3_1:69228522-69228541 Msa0371170:CDS 45.0%
GAGCTTAGCCGTTGATCAAA+GGG - chr3_1:69228599-69228618 None:intergenic 45.0%
AGAGCTTAGCCGTTGATCAA+AGG - chr3_1:69228600-69228619 None:intergenic 45.0%
AGAGTCCAAATCTACTGCCT+TGG + chr3_1:69228835-69228854 Msa0371170:three_prime_UTR 45.0%
ACACACCAAGGCAGTAGATT+TGG - chr3_1:69228843-69228862 None:intergenic 45.0%
!! TGCCTTGGTGTGTTTCCTTT+TGG + chr3_1:69228850-69228869 Msa0371170:three_prime_UTR 45.0%
GTTGTGTTGTGGTTGCTACA+TGG - chr3_1:69226891-69226910 None:intergenic 45.0%
CTTGATCACAACTCTGAGCT+TGG + chr3_1:69227083-69227102 Msa0371170:five_prime_UTR 45.0%
!! CTCTGAGCTTGGCTTTTGAA+TGG + chr3_1:69227094-69227113 Msa0371170:exon 45.0%
! ATCTGCAGATCATTGGTTGC+AGG + chr3_1:69227151-69227170 Msa0371170:CDS 45.0%
GTTAGCATGTCACCAGACAT+TGG - chr3_1:69227706-69227725 None:intergenic 45.0%
CTCCTCTCTATCATGGATGA+TGG - chr3_1:69227739-69227758 None:intergenic 45.0%
CATCATCCATGATAGAGAGG+AGG + chr3_1:69227737-69227756 Msa0371170:CDS 45.0%
TCTTAGCCTCCTCTCTATCA+TGG - chr3_1:69227746-69227765 None:intergenic 45.0%
TTTAGGGATAGGTCATGTGG+TGG - chr3_1:69227769-69227788 None:intergenic 45.0%
! GTGTGAGTTGAATCACACCT+TGG - chr3_1:69227796-69227815 None:intergenic 45.0%
!! CAAGTCTTGCAGAAGTACCT+TGG - chr3_1:69227856-69227875 None:intergenic 45.0%
!! AGAAGGTATTGGACCAAAGG+AGG + chr3_1:69227877-69227896 Msa0371170:CDS 45.0%
GTTCCTAAGTGTTCCTCCTT+TGG - chr3_1:69227893-69227912 None:intergenic 45.0%
ACACTTAGGAACATCCCTGT+TGG + chr3_1:69227901-69227920 Msa0371170:CDS 45.0%
! AGGAAGGTACATGATGTGGT+TGG - chr3_1:69228002-69228021 None:intergenic 45.0%
! TGGTAGGAAGGTACATGATG+TGG - chr3_1:69228006-69228025 None:intergenic 45.0%
GGTGAGAGAATTGCACATCA+GGG - chr3_1:69228059-69228078 None:intergenic 45.0%
AGGTGAGAGAATTGCACATC+AGG - chr3_1:69228060-69228079 None:intergenic 45.0%
TTGGCATGCTTGAAAACCCT+AGG + chr3_1:69228148-69228167 Msa0371170:CDS 45.0%
!! AATATGGGTGTTGGGATTGG+AGG + chr3_1:69228270-69228289 Msa0371170:CDS 45.0%
! GGTGGAATGTCATTTGATGG+AGG + chr3_1:69228345-69228364 Msa0371170:CDS 45.0%
CTTGAATGGCAGCAAGATCA+AGG + chr3_1:69228489-69228508 Msa0371170:CDS 45.0%
GCTGGAAAAGGTCAGTCATT+TGG + chr3_1:69228522-69228541 Msa0371170:CDS 45.0%
GAGCTTAGCCGTTGATCAAA+GGG - chr3_1:69228599-69228618 None:intergenic 45.0%
AGAGCTTAGCCGTTGATCAA+AGG - chr3_1:69228600-69228619 None:intergenic 45.0%
AGAGTCCAAATCTACTGCCT+TGG + chr3_1:69228835-69228854 Msa0371170:three_prime_UTR 45.0%
ACACACCAAGGCAGTAGATT+TGG - chr3_1:69228843-69228862 None:intergenic 45.0%
!! TGCCTTGGTGTGTTTCCTTT+TGG + chr3_1:69228850-69228869 Msa0371170:three_prime_UTR 45.0%
!! AAAAAAAAAAAAAAAATACA+TGG - chr3_1:69228725-69228744 None:intergenic 5.0%
!! AAAAAAAAAAAAAAAATACA+TGG - chr3_1:69228725-69228744 None:intergenic 5.0%
TTGTGGTTGCTACATGGGAC+GGG - chr3_1:69226885-69226904 None:intergenic 50.0%
GTTGTGGTTGCTACATGGGA+CGG - chr3_1:69226886-69226905 None:intergenic 50.0%
GGCACAATTCACGATGAGTC+AGG + chr3_1:69227664-69227683 Msa0371170:CDS 50.0%
GGCCATCATCCATGATAGAG+AGG + chr3_1:69227734-69227753 Msa0371170:CDS 50.0%
ACTACAGTCTCTCTCAGCCA+AGG + chr3_1:69227836-69227855 Msa0371170:CDS 50.0%
GGACCAAAGGAGGAACACTT+AGG + chr3_1:69227887-69227906 Msa0371170:CDS 50.0%
CTTAGGAACATCCCTGTTGG+TGG + chr3_1:69227904-69227923 Msa0371170:CDS 50.0%
TTCTACAGCCTCCACCAACA+GGG - chr3_1:69227918-69227937 None:intergenic 50.0%
TTTCTACAGCCTCCACCAAC+AGG - chr3_1:69227919-69227938 None:intergenic 50.0%
GATCAAGGTTGCTCTGATGC+TGG + chr3_1:69228504-69228523 Msa0371170:CDS 50.0%
GGTTGCTCTGATGCTGGAAA+AGG + chr3_1:69228510-69228529 Msa0371170:CDS 50.0%
TTCACACTCGACCCATCTCT+TGG - chr3_1:69228804-69228823 None:intergenic 50.0%
TCTTTGTGTGCGACACGTCA+TGG + chr3_1:69228893-69228912 Msa0371170:three_prime_UTR 50.0%
CGACACGTCATGGAAGCTTT+AGG + chr3_1:69228903-69228922 Msa0371170:three_prime_UTR 50.0%
TTGTGGTTGCTACATGGGAC+GGG - chr3_1:69226885-69226904 None:intergenic 50.0%
GTTGTGGTTGCTACATGGGA+CGG - chr3_1:69226886-69226905 None:intergenic 50.0%
GGCACAATTCACGATGAGTC+AGG + chr3_1:69227664-69227683 Msa0371170:CDS 50.0%
GGCCATCATCCATGATAGAG+AGG + chr3_1:69227734-69227753 Msa0371170:CDS 50.0%
ACTACAGTCTCTCTCAGCCA+AGG + chr3_1:69227836-69227855 Msa0371170:CDS 50.0%
GGACCAAAGGAGGAACACTT+AGG + chr3_1:69227887-69227906 Msa0371170:CDS 50.0%
CTTAGGAACATCCCTGTTGG+TGG + chr3_1:69227904-69227923 Msa0371170:CDS 50.0%
TTCTACAGCCTCCACCAACA+GGG - chr3_1:69227918-69227937 None:intergenic 50.0%
TTTCTACAGCCTCCACCAAC+AGG - chr3_1:69227919-69227938 None:intergenic 50.0%
GATCAAGGTTGCTCTGATGC+TGG + chr3_1:69228504-69228523 Msa0371170:CDS 50.0%
GGTTGCTCTGATGCTGGAAA+AGG + chr3_1:69228510-69228529 Msa0371170:CDS 50.0%
TTCACACTCGACCCATCTCT+TGG - chr3_1:69228804-69228823 None:intergenic 50.0%
TCTTTGTGTGCGACACGTCA+TGG + chr3_1:69228893-69228912 Msa0371170:three_prime_UTR 50.0%
CGACACGTCATGGAAGCTTT+AGG + chr3_1:69228903-69228922 Msa0371170:three_prime_UTR 50.0%
! AGGAACATCCCTGTTGGTGG+AGG + chr3_1:69227907-69227926 Msa0371170:CDS 55.0%
! AGGAACATCCCTGTTGGTGG+AGG + chr3_1:69227907-69227926 Msa0371170:CDS 55.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 69226877 69229068 69226877 ID=Msa0371170;Name=Msa0371170
chr3_1 mRNA 69226877 69229068 69226877 ID=Msa0371170-mRNA-1;Parent=Msa0371170;Name=Msa0371170-mRNA-1;_AED=0.00;_eAED=0.00;_QI=236|1|1|1|1|1|2|454|336
chr3_1 exon 69226877 69227172 69226877 ID=Msa0371170-mRNA-1:exon:14704;Parent=Msa0371170-mRNA-1
chr3_1 exon 69227664 69229068 69227664 ID=Msa0371170-mRNA-1:exon:14705;Parent=Msa0371170-mRNA-1
chr3_1 five_prime_UTR 69226877 69227112 69226877 ID=Msa0371170-mRNA-1:five_prime_utr;Parent=Msa0371170-mRNA-1
chr3_1 CDS 69227113 69227172 69227113 ID=Msa0371170-mRNA-1:cds;Parent=Msa0371170-mRNA-1
chr3_1 CDS 69227664 69228614 69227664 ID=Msa0371170-mRNA-1:cds;Parent=Msa0371170-mRNA-1
chr3_1 three_prime_UTR 69228615 69229068 69228615 ID=Msa0371170-mRNA-1:three_prime_utr;Parent=Msa0371170-mRNA-1
Gene Sequence

>Msa0371170

ATGGGTTTATCTTCTCTTCACGTCTGCAATATGGAATCATCTGCAGATCATTGGTTGCAGGGCACAATTCACGATGAGTCAGGAATGGATTCATCTTCACCAATGTCTGGTGACATGCTAACATGTTCAAGGCCATCATCCATGATAGAGAGGAGGCTAAGACCACCACATGACCTATCCCTAAAATGTCCAAGGTGTGATTCAACTCACACCAAATTCTGCTATTACAACAACTACAGTCTCTCTCAGCCAAGGTACTTCTGCAAGACTTGTAGAAGGTATTGGACCAAAGGAGGAACACTTAGGAACATCCCTGTTGGTGGAGGCTGTAGAAAAAACAAAAAAGTTTCTTCCAAAAAATCAAATGATCACTTAGCTAATAATAATATTCAAAACCAACCACATCATGTACCTTCCTACCATCAAAACCCTAAAGATCTTCAGCTTTCTTTCCCTGATGTGCAATTCTCTCACCTAAGTAACTTATTTGGAGCTAATGGAGCATTAGGAAACCCTAATTTCATGGAGAACAAGTATAGCAATGTTGGCATGCTTGAAAACCCTAGGCCTATTGACTTCATGATGGAAAGTAAGTTAGAAGGCATAATTGGGAGTAGTTCTAGGAATTTTGATAATTATTTTGGAAATAGTGATCATATGAATATGAATATGGGTGTTGGGATTGGAGGAGATATGATGAATGGACAAAATGGGTTGCCTCAGAATTTTCATCATGCATTTGGTGGAATGTCATTTGATGGAGGAAACAATAGCAATGGTGCTTATTTAATGGATTCTTGTCAAAGACTTATGCTTCCATATGATGCTAATGATGAGGATCATAATGCTTCAATTGATGTGAAGCCAAACCCTAAACTATTGTCACTTGAATGGCAGCAAGATCAAGGTTGCTCTGATGCTGGAAAAGGTCAGTCATTTGGATATGGATCATGGAGTGGTATGATGAATGGTTATGGATCTTCCACAACAAACCCTTTGATCAACGGCTAA
Protein sequence

>Msa0371170

MGLSSLHVCNMESSADHWLQGTIHDESGMDSSSPMSGDMLTCSRPSSMIERRLRPPHDLSLKCPRCDSTHTKFCYYNNYSLSQPRYFCKTCRRYWTKGGTLRNIPVGGGCRKNKKVSSKKSNDHLANNNIQNQPHHVPSYHQNPKDLQLSFPDVQFSHLSNLFGANGALGNPNFMENKYSNVGMLENPRPIDFMMESKLEGIIGSSSRNFDNYFGNSDHMNMNMGVGIGGDMMNGQNGLPQNFHHAFGGMSFDGGNNSNGAYLMDSCQRLMLPYDANDEDHNASIDVKPNPKLLSLEWQQDQGCSDAGKGQSFGYGSWSGMMNGYGSSTTNPLING*