AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0300270

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0300270 MtrunA17_Chr2g0325101 91.534 189 3 1 1 176 1 189 4.28e-124 349
Msa0300270 MtrunA17_Chr4g0037021 79.592 196 27 1 1 183 1 196 1.85e-113 322
Msa0300270 MtrunA17_Chr6g0486041 72.000 200 38 2 1 182 1 200 1.48e-103 298
Msa0300270 MtrunA17_Chr8g0371501 80.337 178 22 1 1 165 1 178 2.11e-103 297
Msa0300270 MtrunA17_Chr5g0405791 79.213 178 24 1 1 165 1 178 4.88e-102 293
Msa0300270 MtrunA17_Chr3g0117931 72.340 188 39 1 2 176 4 191 9.38e-101 291
Msa0300270 MtrunA17_Chr4g0046211 85.315 143 8 1 1 130 1 143 7.80e-84 246
Msa0300270 MtrunA17_Chr7g0265001 33.533 167 104 4 8 168 18 183 2.88e-27 103
Msa0300270 MtrunA17_Chr8g0384311 32.934 167 104 5 8 168 15 179 3.31e-25 98.2
Msa0300270 MtrunA17_Chr1g0212521 34.177 158 96 5 6 157 15 170 2.85e-24 95.9
Msa0300270 MtrunA17_Chr3g0130271 31.548 168 106 5 8 168 14 179 5.50e-24 95.1
Msa0300270 MtrunA17_Chr4g0030911 34.177 158 96 5 6 157 15 170 6.41e-24 95.1
Msa0300270 MtrunA17_Chr1g0182321 34.177 158 96 5 6 157 15 170 7.68e-24 94.7
Msa0300270 MtrunA17_Chr1g0182301 34.177 158 96 5 6 157 15 170 1.23e-23 94.4
Msa0300270 MtrunA17_Chr7g0263071 33.544 158 97 5 6 157 15 170 1.57e-23 94.0
Msa0300270 MtrunA17_Chr1g0159481 32.335 167 105 5 8 168 19 183 2.37e-23 93.6
Msa0300270 MtrunA17_Chr6g0458081 29.231 195 123 6 1 190 1 185 1.07e-22 91.7
Msa0300270 MtrunA17_Chr2g0290891 32.099 162 103 5 1 157 1 160 1.13e-22 91.7
Msa0300270 MtrunA17_Chr1g0180291 32.934 167 103 6 8 167 16 180 2.57e-22 90.5
Msa0300270 MtrunA17_Chr8g0335471 33.129 163 99 6 8 162 10 170 1.08e-20 86.3
Msa0300270 MtrunA17_Chr8g0349711 29.630 162 107 5 1 157 1 160 1.15e-20 86.3
Msa0300270 MtrunA17_Chr1g0199331 33.333 168 102 7 7 167 32 196 1.64e-20 85.5
Msa0300270 MtrunA17_Chr4g0055081 34.839 155 94 5 8 157 11 163 6.78e-20 84.0
Msa0300270 MtrunA17_Chr7g0250531 31.613 155 99 5 8 157 10 162 7.78e-20 84.0
Msa0300270 MtrunA17_Chr1g0174281 34.839 155 94 6 8 157 17 169 1.62e-19 83.6
Msa0300270 MtrunA17_Chr2g0327911 31.285 179 113 6 6 176 15 191 2.10e-19 83.2
Msa0300270 MtrunA17_Chr4g0055651 30.323 155 101 5 8 157 10 162 2.37e-19 82.4
Msa0300270 MtrunA17_Chr3g0112681 34.395 157 92 5 8 157 14 166 6.34e-19 81.6
Msa0300270 MtrunA17_Chr1g0197331 30.058 173 113 5 8 173 17 188 1.04e-18 81.3
Msa0300270 MtrunA17_Chr2g0276931 30.968 155 100 5 8 157 11 163 1.15e-18 80.9
Msa0300270 MtrunA17_Chr2g0319951 30.994 171 113 5 8 174 15 184 1.62e-18 80.9
Msa0300270 MtrunA17_Chr8g0381841 34.194 155 95 5 8 157 19 171 2.19e-18 80.5
Msa0300270 MtrunA17_Chr5g0400131 34.194 155 95 5 8 157 11 163 2.38e-18 80.1
Msa0300270 MtrunA17_Chr8g0346421 37.719 114 68 3 8 119 28 140 3.27e-18 80.1
Msa0300270 MtrunA17_Chr4g0032201 32.258 155 98 5 8 157 14 166 3.33e-18 79.7
Msa0300270 MtrunA17_Chr8g0392931 30.682 176 117 4 8 179 16 190 3.86e-18 79.7
Msa0300270 MtrunA17_Chr3g0123971 33.548 155 96 5 8 157 11 163 4.76e-18 79.3
Msa0300270 MtrunA17_Chr8g0349681 28.395 162 109 5 1 157 8 167 4.84e-18 82.4
Msa0300270 MtrunA17_Chr8g0349681 28.395 162 109 5 1 157 379 538 7.57e-18 81.6
Msa0300270 MtrunA17_Chr8g0349681 27.160 162 111 5 1 157 170 329 4.31e-17 79.7
Msa0300270 MtrunA17_Chr7g0231131 32.258 155 98 5 8 157 17 169 5.48e-18 79.3
Msa0300270 MtrunA17_Chr7g0234201 31.361 169 109 5 8 171 15 181 6.66e-18 79.0
Msa0300270 MtrunA17_Chr3g0123821 32.903 155 97 5 8 157 18 170 7.40e-18 79.0
Msa0300270 MtrunA17_Chr8g0382221 32.903 155 97 5 8 157 11 163 1.08e-17 78.2
Msa0300270 MtrunA17_Chr7g0275991 32.258 155 98 5 8 157 22 174 1.15e-17 78.6
Msa0300270 MtrunA17_Chr7g0214241 30.178 169 111 5 8 171 17 183 1.20e-17 78.6
Msa0300270 MtrunA17_Chr8g0390561 31.613 155 99 5 8 157 11 163 1.32e-17 77.8
Msa0300270 MtrunA17_Chr2g0276941 32.298 161 98 5 8 161 17 173 2.78e-17 77.4
Msa0300270 MtrunA17_Chr1g0201121 29.348 184 116 6 1 171 1 183 5.07e-17 76.6
Msa0300270 MtrunA17_Chr2g0315551 32.468 154 99 5 8 157 15 167 5.20e-17 76.6
Msa0300270 MtrunA17_Chr8g0351861 31.613 155 99 5 8 157 18 170 8.67e-17 76.3
Msa0300270 MtrunA17_Chr4g0040781 36.842 114 69 3 8 119 15 127 1.56e-16 75.5
Msa0300270 MtrunA17_Chr2g0283131 35.965 114 70 3 8 119 15 127 1.77e-16 75.1
Msa0300270 MtrunA17_Chr4g0046261 35.965 114 70 3 8 119 15 127 1.96e-16 75.1
Msa0300270 MtrunA17_Chr1g0189361 31.481 162 104 5 8 164 16 175 4.32e-16 74.3
Msa0300270 MtrunA17_Chr8g0383261 29.070 172 110 4 6 166 12 182 4.47e-16 73.9
Msa0300270 MtrunA17_Chr6g0466301 28.249 177 115 5 6 171 8 183 4.94e-16 73.9
Msa0300270 MtrunA17_Chr6g0465491 28.249 177 115 5 6 171 8 183 4.94e-16 73.9
Msa0300270 MtrunA17_Chr3g0109721 30.769 156 99 5 8 157 12 164 6.17e-16 73.6
Msa0300270 MtrunA17_Chr2g0331691 28.652 178 115 5 6 172 10 186 8.88e-16 73.2
Msa0300270 MtrunA17_Chr5g0433561 29.762 168 112 5 8 170 12 178 3.49e-15 71.2
Msa0300270 MtrunA17_Chr4g0034871 28.090 178 116 5 6 172 8 184 4.21e-15 71.2
Msa0300270 MtrunA17_Chr4g0004661 28.108 185 119 6 1 172 57 240 4.39e-15 72.4
Msa0300270 MtrunA17_Chr2g0325091 34.646 127 80 3 8 132 13 138 2.41e-14 69.3
Msa0300270 MtrunA17_Chr6g0482721 30.519 154 102 4 8 157 14 166 3.52e-14 68.9
Msa0300270 MtrunA17_Chr4g0046221 78.378 37 8 0 129 165 10 46 5.61e-14 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0300270 AT4G35020.1 81.215 181 21 1 1 168 1 181 5.82e-108 309
Msa0300270 AT4G35020.2 81.215 181 21 1 1 168 1 181 5.82e-108 309
Msa0300270 AT4G35020.3 81.215 181 21 1 1 168 1 181 5.82e-108 309
Msa0300270 AT5G45970.1 82.682 179 18 1 1 166 1 179 3.26e-106 305
Msa0300270 AT1G75840.1 82.022 178 19 1 1 165 1 178 3.26e-105 302
Msa0300270 AT1G20090.1 84.000 175 15 1 4 165 3 177 4.62e-105 301
Msa0300270 AT3G51300.1 80.899 178 21 1 1 165 1 178 3.63e-104 299
Msa0300270 AT2G17800.2 80.899 178 21 1 1 165 1 178 1.34e-103 298
Msa0300270 AT2G17800.1 80.899 178 21 1 1 165 1 178 1.34e-103 298
Msa0300270 AT4G35950.1 79.775 178 23 1 1 165 1 178 2.02e-102 295
Msa0300270 AT4G28950.1 69.082 207 52 2 1 195 1 207 7.10e-102 294
Msa0300270 AT2G44690.1 75.000 184 33 1 6 176 18 201 1.69e-99 288
Msa0300270 AT3G48040.1 75.978 179 30 1 2 167 4 182 1.76e-98 285
Msa0300270 AT5G62880.1 75.419 179 31 1 2 167 4 182 5.02e-98 284
Msa0300270 AT5G62880.2 73.256 172 29 2 2 160 4 171 3.44e-89 261
Msa0300270 AT3G48040.2 74.847 163 28 1 2 151 4 166 4.12e-88 258
Msa0300270 AT4G35020.4 90.083 121 12 0 1 121 1 121 2.40e-81 239
Msa0300270 AT4G35020.5 90.083 121 12 0 1 121 1 121 2.40e-81 239
Msa0300270 AT3G51290.2 79.310 145 17 1 34 165 635 779 9.35e-75 241
Msa0300270 AT1G43890.3 33.533 167 103 5 8 168 15 179 8.41e-25 97.4
Msa0300270 AT1G43890.1 33.533 167 103 5 8 168 15 179 8.41e-25 97.4
Msa0300270 AT1G43890.2 33.533 167 103 5 8 168 15 179 8.41e-25 97.4
Msa0300270 AT3G46060.2 34.177 158 96 5 6 157 15 170 1.13e-23 94.7
Msa0300270 AT3G46060.3 34.177 158 96 5 6 157 15 170 1.13e-23 94.7
Msa0300270 AT3G46060.1 34.177 158 96 5 6 157 15 170 1.13e-23 94.7
Msa0300270 AT4G35860.1 32.164 171 109 5 1 166 1 169 1.99e-23 94.0
Msa0300270 AT3G53610.2 32.335 167 105 5 6 166 15 179 6.54e-23 92.8
Msa0300270 AT3G53610.3 32.335 167 105 5 6 166 15 179 6.54e-23 92.8
Msa0300270 AT3G53610.1 32.335 167 105 5 6 166 15 179 6.54e-23 92.8
Msa0300270 AT4G17170.1 32.099 162 103 5 1 157 1 160 9.23e-23 92.0
Msa0300270 AT5G59840.1 32.335 167 105 5 6 166 15 179 1.35e-22 92.0
Msa0300270 AT3G54840.1 32.934 167 104 5 7 167 34 198 8.07e-22 89.4
Msa0300270 AT1G18200.1 35.503 169 102 6 8 171 15 181 1.38e-21 89.4
Msa0300270 AT3G54840.3 32.927 164 102 5 10 167 3 164 1.63e-21 87.8
Msa0300270 AT3G54840.2 33.544 158 97 5 7 158 34 189 2.06e-21 88.2
Msa0300270 AT5G03530.2 31.548 168 106 6 8 168 15 180 4.76e-21 87.8
Msa0300270 AT5G03530.1 31.548 168 106 6 8 168 15 180 4.76e-21 87.8
Msa0300270 AT4G17160.1 30.864 162 105 5 1 157 1 160 8.38e-21 87.0
Msa0300270 AT3G09900.1 34.132 167 102 5 6 166 15 179 3.01e-20 85.9
Msa0300270 AT4G17530.1 32.000 175 107 7 8 172 10 182 5.50e-20 84.7
Msa0300270 AT3G11730.1 30.968 155 100 5 8 157 10 162 6.23e-20 84.7
Msa0300270 AT4G19640.1 33.548 155 96 5 8 157 12 164 1.02e-19 84.0
Msa0300270 AT2G43130.1 30.588 170 111 5 8 172 14 181 1.04e-19 84.3
Msa0300270 AT5G47200.1 32.353 170 103 7 8 167 10 177 1.26e-19 83.6
Msa0300270 AT1G02130.1 32.484 157 99 5 8 159 10 164 1.50e-19 83.6
Msa0300270 AT4G39890.1 34.375 160 96 6 4 157 8 164 1.53e-19 83.6
Msa0300270 AT3G12160.1 34.839 155 94 6 8 157 17 169 1.92e-19 83.6
Msa0300270 AT5G03520.1 34.132 167 102 5 6 166 15 179 2.82e-19 83.2
Msa0300270 AT5G45130.1 31.285 179 113 6 8 181 12 185 2.89e-19 82.8
Msa0300270 AT2G31680.1 31.176 170 110 5 8 172 14 181 3.15e-19 83.2
Msa0300270 AT1G16920.1 30.899 178 116 5 6 178 13 188 3.37e-19 82.8
Msa0300270 AT5G45130.2 31.073 177 112 6 10 181 22 193 6.83e-19 82.0
Msa0300270 AT1G73640.1 33.728 169 105 5 8 171 15 181 1.13e-18 82.0
Msa0300270 AT2G22290.1 35.484 155 93 5 8 157 11 163 1.14e-18 81.3
Msa0300270 AT4G18800.1 30.286 175 117 5 8 178 15 188 1.34e-18 81.3
Msa0300270 AT5G64990.1 35.484 155 93 5 8 157 9 161 1.87e-18 80.5
Msa0300270 AT5G10260.1 34.194 155 95 5 8 157 11 163 1.99e-18 80.5
Msa0300270 AT1G09630.1 32.749 171 104 5 8 171 14 180 2.46e-18 80.5
Msa0300270 AT5G45750.1 33.117 154 98 5 8 157 15 167 3.16e-18 80.1
Msa0300270 AT1G06400.1 33.333 156 99 5 6 157 13 167 3.40e-18 80.1
Msa0300270 AT2G44610.1 33.548 155 96 5 8 157 11 163 5.61e-18 79.3
Msa0300270 AT1G22740.1 30.435 184 114 6 1 171 1 183 5.65e-18 79.3
Msa0300270 AT5G59150.1 30.769 169 110 5 8 171 14 180 5.80e-18 79.7
Msa0300270 AT1G05810.1 32.075 159 101 5 8 161 14 170 6.42e-18 79.3
Msa0300270 AT5G65270.1 33.548 155 96 5 8 157 19 171 6.96e-18 79.7
Msa0300270 AT1G05810.2 32.075 159 101 5 8 161 60 216 1.10e-17 79.7
Msa0300270 AT3G15060.1 29.545 176 119 4 8 179 15 189 1.84e-17 78.2
Msa0300270 AT1G07410.1 30.178 169 111 5 8 171 14 180 2.06e-17 78.2
Msa0300270 AT2G33870.1 35.659 129 80 3 8 134 15 142 3.63e-17 77.4
Msa0300270 AT3G46830.1 31.613 155 99 5 8 157 14 166 4.56e-17 77.0
Msa0300270 AT3G46830.2 31.613 155 99 5 8 157 14 166 4.56e-17 77.0
Msa0300270 AT4G18430.1 33.117 154 98 4 8 157 15 167 7.63e-17 76.6
Msa0300270 AT4G19640.2 35.088 114 71 3 8 119 12 124 1.14e-16 74.7
Msa0300270 AT5G47960.1 34.211 114 72 3 8 119 17 129 1.18e-16 76.3
Msa0300270 AT5G47520.1 30.864 162 105 5 8 164 16 175 1.82e-16 75.5
Msa0300270 AT4G19640.3 35.088 114 71 3 8 119 12 124 1.91e-16 75.1
Msa0300270 AT2G21880.1 26.601 203 132 6 6 197 9 205 2.33e-16 75.1
Msa0300270 AT1G28550.1 34.884 129 81 3 8 134 15 142 2.45e-16 75.1
Msa0300270 AT3G18820.1 28.652 178 115 5 6 172 8 184 2.79e-16 74.7
Msa0300270 AT3G07410.1 29.586 169 112 5 8 171 14 180 2.84e-16 75.1
Msa0300270 AT4G39990.1 30.769 156 101 5 8 158 19 172 3.47e-16 75.1
Msa0300270 AT5G60860.1 29.167 168 114 4 8 171 15 181 3.83e-16 74.7
Msa0300270 AT1G01200.1 35.115 131 78 4 8 132 30 159 4.62e-16 74.7
Msa0300270 AT4G35860.2 32.258 124 78 4 47 166 2 123 2.64e-15 71.2
Msa0300270 AT3G16100.1 28.649 185 118 6 1 172 1 184 7.89e-15 70.9
Msa0300270 AT1G52280.1 29.143 175 110 6 1 162 1 174 1.71e-14 70.1
Msa0300270 AT4G09720.1 28.652 178 113 6 1 165 1 177 2.85e-14 69.3
Msa0300270 AT3G09910.3 28.743 167 110 6 8 167 15 179 3.84e-14 68.9
Msa0300270 AT3G09910.1 28.743 167 110 6 8 167 15 179 3.84e-14 68.9
Msa0300270 AT3G09910.2 28.743 167 110 6 8 167 15 179 3.84e-14 68.9
Msa0300270 AT3G09910.5 29.448 163 106 6 8 163 15 175 7.97e-14 68.2
Msa0300270 AT3G09910.4 29.448 163 106 6 8 163 15 175 7.97e-14 68.2
Msa0300270 AT1G49300.2 28.834 163 104 5 6 157 8 169 1.65e-13 67.4
Msa0300270 AT1G49300.1 28.834 163 104 5 6 157 8 169 1.65e-13 67.4
Msa0300270 AT5G03520.2 34.400 125 75 4 47 166 47 169 2.15e-13 67.0
Msa0300270 AT4G09720.4 26.455 189 120 5 1 171 1 188 8.54e-13 65.5
Msa0300270 AT5G39620.1 27.586 174 116 4 7 170 6 179 1.47e-12 64.7
Msa0300270 AT5G27540.1 22.807 171 125 2 3 167 14 183 6.57e-12 64.7
Msa0300270 AT5G27540.2 22.807 171 125 2 3 167 14 183 6.57e-12 64.7
Msa0300270 AT4G09720.3 25.641 195 120 5 1 171 1 194 7.70e-12 62.8
Msa0300270 AT3G63150.1 29.167 168 110 5 7 167 15 180 2.84e-11 62.8
Msa0300270 AT5G59150.2 29.457 129 85 4 47 171 3 129 4.21e-11 60.1

Find 58 sgRNAs with CRISPR-Local

Find 279 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTAGCTTTCTGTTTCTTTA+AGG 0.156260 2_3:-55635714 None:intergenic
GCACAGTTAATCTTGGATTA+TGG 0.198843 2_3:+55636260 Msa0300270:CDS
TCAATACAAGCAGGAGAATT+TGG 0.242087 2_3:+55638075 Msa0300270:three_prime_UTR
TGCTGTGACATTTGATTTCA+TGG 0.261322 2_3:+55637876 Msa0300270:CDS
CAAACATGAATACCGATTAA+AGG 0.301861 2_3:-55637845 None:intergenic
TTTAGAGATATTCTCATAAC+TGG 0.310909 2_3:-55636667 None:intergenic
TTATGAGAATATCTCTAAAA+AGG 0.315067 2_3:+55636671 Msa0300270:CDS
TGTTTAGCTCCTACCAAGTT+TGG 0.332301 2_3:-55636837 None:intergenic
GGGAAGTGAAGCATTTAATA+AGG 0.341130 2_3:-55635792 None:intergenic
TTAGCTTTCTGTTTCTTTAA+GGG 0.348554 2_3:-55635713 None:intergenic
CTTTAATCGGTATTCATGTT+TGG 0.355137 2_3:+55637846 Msa0300270:CDS
CACAGTTAATCTTGGATTAT+GGG 0.369623 2_3:+55636261 Msa0300270:CDS
TGTTCCTAGTTATATGTAAC+TGG 0.376841 2_3:+55637979 Msa0300270:three_prime_UTR
AGTGCAAATGTTGTGGTTGA+TGG 0.385099 2_3:+55636235 Msa0300270:CDS
TTGGAATACATTTGTTCAAA+AGG 0.391256 2_3:-55637904 None:intergenic
AGTGTAGTGTTAAGAAAGAA+AGG 0.396830 2_3:-55635852 None:intergenic
CAGGACAAGAGGATTATAAC+AGG 0.405871 2_3:+55636580 Msa0300270:intron
CTTAGGCCTTTGAGCTATAG+AGG 0.408891 2_3:+55636603 Msa0300270:CDS
GATGGCAGCACAGTTAATCT+TGG 0.412892 2_3:+55636253 Msa0300270:CDS
GGAGCATAATGTCTCAGTTC+AGG 0.421519 2_3:-55636788 None:intergenic
TTGGTTCCCACAAGTACAAT+TGG 0.428473 2_3:-55636818 None:intergenic
GAAGAGCTGAAGAGGGCAAT+TGG 0.442300 2_3:+55637536 Msa0300270:CDS
TTCATCAAATGTGTTACTGT+TGG 0.452151 2_3:+55636028 Msa0300270:CDS
GTACTTGTGGGAACCAAACT+TGG 0.487335 2_3:+55636824 Msa0300270:CDS
AAGAGGATTATAACAGGCTT+AGG 0.490120 2_3:+55636586 Msa0300270:CDS
TGTGTTTGATGCTGCAATCA+AGG 0.491064 2_3:+55637765 Msa0300270:CDS
AACTGAAAGAAAGTAGAGCT+TGG 0.498823 2_3:-55637923 None:intergenic
CTTGTTTGGTGTTGTAGTAG+TGG 0.499810 2_3:-55635657 None:intergenic
ACAAGTACAATTGGCACAGT+TGG 0.513226 2_3:-55636809 None:intergenic
AGGAGCAGATGTGTTCTTGT+TGG 0.514278 2_3:+55636623 Msa0300270:CDS
ATTTAATAAGGCAAGTCCTA+TGG 0.517827 2_3:-55635780 None:intergenic
GGCTCTGCTGAGTAGTGAAA+AGG 0.521685 2_3:-55636646 None:intergenic
TTTCTGTTTCTTTAAGGGGA+AGG 0.524640 2_3:-55635708 None:intergenic
AACTGTGCCAATTGTACTTG+TGG 0.525586 2_3:+55636811 Msa0300270:CDS
TGCAATATTTCAGAATGTGA+AGG 0.527117 2_3:+55637741 Msa0300270:intron
GTGTTAAGAAAGAAAGGGAG+AGG 0.529191 2_3:-55635846 None:intergenic
TATCAATCGTCAATACAAGC+AGG 0.530556 2_3:+55638066 Msa0300270:three_prime_UTR
TAGCTTTCTGTTTCTTTAAG+GGG 0.533652 2_3:-55635712 None:intergenic
CTTATCACAAAATTTATCCA+TGG 0.538708 2_3:-55638006 None:intergenic
TACAAGCAGGAGAATTTGGT+TGG 0.540898 2_3:+55638079 Msa0300270:three_prime_UTR
CACACTAAAGTTGGTGCCAT+AGG 0.549969 2_3:+55635764 Msa0300270:five_prime_UTR
TGTTAAGAAAGAAAGGGAGA+GGG 0.559477 2_3:-55635845 None:intergenic
TACAGCTATAACTACTGCCC+AGG 0.559919 2_3:+55637279 Msa0300270:CDS
GTGTAGTGTTAAGAAAGAAA+GGG 0.562203 2_3:-55635851 None:intergenic
GTTAAGAAAGAAAGGGAGAG+GGG 0.563343 2_3:-55635844 None:intergenic
ATGCAGCTCAAAGACTCAGC+AGG 0.566907 2_3:+55637577 Msa0300270:CDS
CTTGGATTATGGGACACTGC+TGG 0.569014 2_3:+55636271 Msa0300270:CDS
GGCAGGGTGAAGAGCTGAAG+AGG 0.570105 2_3:+55637528 Msa0300270:intron
CAGTGATGAAAACAACAAAA+CGG 0.589997 2_3:+55635942 Msa0300270:five_prime_UTR
ACTGTGCCAATTGTACTTGT+GGG 0.592943 2_3:+55636812 Msa0300270:CDS
ATATCCAGTTACATATAACT+AGG 0.598387 2_3:-55637983 None:intergenic
TATATGTAACTGGATATCCA+TGG 0.598619 2_3:+55637989 Msa0300270:three_prime_UTR
CACAAGCAATACATTCCCTA+CGG 0.607441 2_3:+55636090 Msa0300270:CDS
ACTGTTGGAGATGGTGCTGT+TGG 0.608648 2_3:+55636043 Msa0300270:CDS
TAACTTCAGTGCAAATGTTG+TGG 0.625689 2_3:+55636228 Msa0300270:CDS
TCTGCTCCTCTATAGCTCAA+AGG 0.639148 2_3:-55636609 None:intergenic
AAATGTGTTACTGTTGGAGA+TGG 0.644647 2_3:+55636034 Msa0300270:CDS
GCAGGGTGAAGAGCTGAAGA+GGG 0.664533 2_3:+55637529 Msa0300270:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAATTTTTTCATAAAAATTC+AGG + chr2_3:55636561-55636580 Msa0300270:intron 10.0%
!! TAAACATATATAACTTAATT+GGG + chr2_3:55636854-55636873 Msa0300270:intron 10.0%
!! ACAAATAATGTAAAATTTAT+GGG + chr2_3:55637507-55637526 Msa0300270:intron 10.0%
!!! TAATTTTTTCATAAAAATTC+AGG + chr2_3:55636561-55636580 Msa0300270:intron 10.0%
!! TAAACATATATAACTTAATT+GGG + chr2_3:55636854-55636873 Msa0300270:intron 10.0%
!! ACAAATAATGTAAAATTTAT+GGG + chr2_3:55637507-55637526 Msa0300270:intron 10.0%
!!! ATTTGAATTTTGAATTGAAA+AGG - chr2_3:55635819-55635838 None:intergenic 15.0%
!!! TAACAAATTTAGTTTATGTT+TGG + chr2_3:55636145-55636164 Msa0300270:intron 15.0%
!! ATGAAAAAATTAGTAAATCT+TGG - chr2_3:55636553-55636572 None:intergenic 15.0%
!! CTAAACATATATAACTTAAT+TGG + chr2_3:55636853-55636872 Msa0300270:intron 15.0%
!! CACAAATAATGTAAAATTTA+TGG + chr2_3:55637506-55637525 Msa0300270:intron 15.0%
!! TTAACATAATCAGAAATTAT+TGG + chr2_3:55637645-55637664 Msa0300270:intron 15.0%
!!! ATTTGAATTTTGAATTGAAA+AGG - chr2_3:55635819-55635838 None:intergenic 15.0%
!!! TAACAAATTTAGTTTATGTT+TGG + chr2_3:55636145-55636164 Msa0300270:intron 15.0%
!! ATGAAAAAATTAGTAAATCT+TGG - chr2_3:55636553-55636572 None:intergenic 15.0%
!! CTAAACATATATAACTTAAT+TGG + chr2_3:55636853-55636872 Msa0300270:intron 15.0%
!! CACAAATAATGTAAAATTTA+TGG + chr2_3:55637506-55637525 Msa0300270:intron 15.0%
!! TTAACATAATCAGAAATTAT+TGG + chr2_3:55637645-55637664 Msa0300270:intron 15.0%
!!! TTATGAGAATATCTCTAAAA+AGG + chr2_3:55636671-55636690 Msa0300270:CDS 20.0%
!!! TTCACTTGTGAATTTTTATA+TGG + chr2_3:55636714-55636733 Msa0300270:intron 20.0%
!! AAGTTAGTAGTATTAATTAG+GGG - chr2_3:55637029-55637048 None:intergenic 20.0%
!! CAAGTTAGTAGTATTAATTA+GGG - chr2_3:55637030-55637049 None:intergenic 20.0%
!! ACAAGTTAGTAGTATTAATT+AGG - chr2_3:55637031-55637050 None:intergenic 20.0%
!! TTTAATACACATACAAACAA+AGG + chr2_3:55637072-55637091 Msa0300270:intron 20.0%
!! ATTCCAAATAGTATTTAAGT+TGG + chr2_3:55637387-55637406 Msa0300270:intron 20.0%
!! CATATATAGTTATATACTCA+TGG + chr2_3:55637617-55637636 Msa0300270:intron 20.0%
!!! ATCATGTATTTTCCTTTAAT+CGG + chr2_3:55637833-55637852 Msa0300270:CDS 20.0%
!!! TTCTTGTATTTTTTTGTTGA+TGG + chr2_3:55637946-55637965 Msa0300270:CDS 20.0%
!!! TTATGAGAATATCTCTAAAA+AGG + chr2_3:55636671-55636690 Msa0300270:CDS 20.0%
!!! TTCACTTGTGAATTTTTATA+TGG + chr2_3:55636714-55636733 Msa0300270:intron 20.0%
!! AAGTTAGTAGTATTAATTAG+GGG - chr2_3:55637029-55637048 None:intergenic 20.0%
!! CAAGTTAGTAGTATTAATTA+GGG - chr2_3:55637030-55637049 None:intergenic 20.0%
!! ACAAGTTAGTAGTATTAATT+AGG - chr2_3:55637031-55637050 None:intergenic 20.0%
!! TTTAATACACATACAAACAA+AGG + chr2_3:55637072-55637091 Msa0300270:intron 20.0%
!! ATTCCAAATAGTATTTAAGT+TGG + chr2_3:55637387-55637406 Msa0300270:intron 20.0%
!! CATATATAGTTATATACTCA+TGG + chr2_3:55637617-55637636 Msa0300270:intron 20.0%
!!! ATCATGTATTTTCCTTTAAT+CGG + chr2_3:55637833-55637852 Msa0300270:CDS 20.0%
!!! TTCTTGTATTTTTTTGTTGA+TGG + chr2_3:55637946-55637965 Msa0300270:CDS 20.0%
!!! AGTTTTTAGATCAGCAAAAA+AGG - chr2_3:55635684-55635703 None:intergenic 25.0%
!! TTAGCTTTCTGTTTCTTTAA+GGG - chr2_3:55635716-55635735 None:intergenic 25.0%
!!! TTTAGCTTTCTGTTTCTTTA+AGG - chr2_3:55635717-55635736 None:intergenic 25.0%
!! GAATTTTGAATTGAAAAGGA+GGG - chr2_3:55635815-55635834 None:intergenic 25.0%
!! TGAATTTTGAATTGAAAAGG+AGG - chr2_3:55635816-55635835 None:intergenic 25.0%
!!! GTTCAAATATTTTCTAGTGA+AGG + chr2_3:55635901-55635920 Msa0300270:five_prime_UTR 25.0%
!!! CTTGTTCTTGTTTTTTTTGA+AGG + chr2_3:55636183-55636202 Msa0300270:intron 25.0%
! TAAGTAGCAAAGACATTTAA+CGG + chr2_3:55636360-55636379 Msa0300270:intron 25.0%
! TTTAGAGATATTCTCATAAC+TGG - chr2_3:55636670-55636689 None:intergenic 25.0%
!!! GGAAGTATTAAATTACTACA+AGG - chr2_3:55636910-55636929 None:intergenic 25.0%
! AGGGACAAAAATAATCAAAT+GGG - chr2_3:55636950-55636969 None:intergenic 25.0%
! TAGGGACAAAAATAATCAAA+TGG - chr2_3:55636951-55636970 None:intergenic 25.0%
! AGCATCTAGTAATTTGAAAA+GGG - chr2_3:55636983-55637002 None:intergenic 25.0%
! AAGCATCTAGTAATTTGAAA+AGG - chr2_3:55636984-55637003 None:intergenic 25.0%
!! TATTAATTAGGGGTATGTTT+AGG - chr2_3:55637019-55637038 None:intergenic 25.0%
! AAGAAATGTGAAAAATGCAA+AGG + chr2_3:55637154-55637173 Msa0300270:intron 25.0%
! AGAAATGTGAAAAATGCAAA+GGG + chr2_3:55637155-55637174 Msa0300270:intron 25.0%
! TCATACAAATTTGTAGGAAT+TGG + chr2_3:55637306-55637325 Msa0300270:intron 25.0%
! ATGCCAACTTAAATACTATT+TGG - chr2_3:55637393-55637412 None:intergenic 25.0%
! ATAATGTAAAATTTATGGGC+AGG + chr2_3:55637511-55637530 Msa0300270:intron 25.0%
! TAATGTAAAATTTATGGGCA+GGG + chr2_3:55637512-55637531 Msa0300270:intron 25.0%
!!! CTTTCTTTTTTCTTTTGCTT+AGG - chr2_3:55637805-55637824 None:intergenic 25.0%
! TTGGAATACATTTGTTCAAA+AGG - chr2_3:55637907-55637926 None:intergenic 25.0%
! ATATCCAGTTACATATAACT+AGG - chr2_3:55637986-55638005 None:intergenic 25.0%
! CTTATCACAAAATTTATCCA+TGG - chr2_3:55638009-55638028 None:intergenic 25.0%
!!! AGTTTTTAGATCAGCAAAAA+AGG - chr2_3:55635684-55635703 None:intergenic 25.0%
!! TTAGCTTTCTGTTTCTTTAA+GGG - chr2_3:55635716-55635735 None:intergenic 25.0%
!!! TTTAGCTTTCTGTTTCTTTA+AGG - chr2_3:55635717-55635736 None:intergenic 25.0%
!! GAATTTTGAATTGAAAAGGA+GGG - chr2_3:55635815-55635834 None:intergenic 25.0%
!! TGAATTTTGAATTGAAAAGG+AGG - chr2_3:55635816-55635835 None:intergenic 25.0%
!!! GTTCAAATATTTTCTAGTGA+AGG + chr2_3:55635901-55635920 Msa0300270:five_prime_UTR 25.0%
!!! CTTGTTCTTGTTTTTTTTGA+AGG + chr2_3:55636183-55636202 Msa0300270:intron 25.0%
! TAAGTAGCAAAGACATTTAA+CGG + chr2_3:55636360-55636379 Msa0300270:intron 25.0%
! TTTAGAGATATTCTCATAAC+TGG - chr2_3:55636670-55636689 None:intergenic 25.0%
!!! GGAAGTATTAAATTACTACA+AGG - chr2_3:55636910-55636929 None:intergenic 25.0%
! AGGGACAAAAATAATCAAAT+GGG - chr2_3:55636950-55636969 None:intergenic 25.0%
! TAGGGACAAAAATAATCAAA+TGG - chr2_3:55636951-55636970 None:intergenic 25.0%
! AGCATCTAGTAATTTGAAAA+GGG - chr2_3:55636983-55637002 None:intergenic 25.0%
! AAGCATCTAGTAATTTGAAA+AGG - chr2_3:55636984-55637003 None:intergenic 25.0%
!! TATTAATTAGGGGTATGTTT+AGG - chr2_3:55637019-55637038 None:intergenic 25.0%
! AAGAAATGTGAAAAATGCAA+AGG + chr2_3:55637154-55637173 Msa0300270:intron 25.0%
! AGAAATGTGAAAAATGCAAA+GGG + chr2_3:55637155-55637174 Msa0300270:intron 25.0%
! TCATACAAATTTGTAGGAAT+TGG + chr2_3:55637306-55637325 Msa0300270:intron 25.0%
! ATGCCAACTTAAATACTATT+TGG - chr2_3:55637393-55637412 None:intergenic 25.0%
! ATAATGTAAAATTTATGGGC+AGG + chr2_3:55637511-55637530 Msa0300270:intron 25.0%
! TAATGTAAAATTTATGGGCA+GGG + chr2_3:55637512-55637531 Msa0300270:intron 25.0%
!!! CTTTCTTTTTTCTTTTGCTT+AGG - chr2_3:55637805-55637824 None:intergenic 25.0%
! TTGGAATACATTTGTTCAAA+AGG - chr2_3:55637907-55637926 None:intergenic 25.0%
! ATATCCAGTTACATATAACT+AGG - chr2_3:55637986-55638005 None:intergenic 25.0%
! CTTATCACAAAATTTATCCA+TGG - chr2_3:55638009-55638028 None:intergenic 25.0%
! TAGCTTTCTGTTTCTTTAAG+GGG - chr2_3:55635715-55635734 None:intergenic 30.0%
AAAAAGAGTCACACTAAAGT+TGG + chr2_3:55635755-55635774 Msa0300270:five_prime_UTR 30.0%
ATTTAATAAGGCAAGTCCTA+TGG - chr2_3:55635783-55635802 None:intergenic 30.0%
GTGTAGTGTTAAGAAAGAAA+GGG - chr2_3:55635854-55635873 None:intergenic 30.0%
AGTGTAGTGTTAAGAAAGAA+AGG - chr2_3:55635855-55635874 None:intergenic 30.0%
CAGTGATGAAAACAACAAAA+CGG + chr2_3:55635942-55635961 Msa0300270:five_prime_UTR 30.0%
!! CTTTGCTTTGAAAGAAAAAC+AGG + chr2_3:55635974-55635993 Msa0300270:five_prime_UTR 30.0%
! TTCATCAAATGTGTTACTGT+TGG + chr2_3:55636028-55636047 Msa0300270:CDS 30.0%
CTGAAGTTATCAAAAACTGT+AGG - chr2_3:55636217-55636236 None:intergenic 30.0%
CACAGTTAATCTTGGATTAT+GGG + chr2_3:55636261-55636280 Msa0300270:CDS 30.0%
! TGCTGGTAAGAATTTTCTTT+AGG + chr2_3:55636288-55636307 Msa0300270:intron 30.0%
! TGGTAAGAATTTTCTTTAGG+TGG + chr2_3:55636291-55636310 Msa0300270:intron 30.0%
CACAAAAACAACATTCTATC+TGG - chr2_3:55636454-55636473 None:intergenic 30.0%
ACTATTAATTACACACAGAG+AGG - chr2_3:55636520-55636539 None:intergenic 30.0%
TCATAAAAATTCAGGACAAG+AGG + chr2_3:55636569-55636588 Msa0300270:intron 30.0%
GACAAAAATAATCAAATGGG+TGG - chr2_3:55636947-55636966 None:intergenic 30.0%
CATCTAGTAATTTGAAAAGG+GGG - chr2_3:55636981-55637000 None:intergenic 30.0%
GCATCTAGTAATTTGAAAAG+GGG - chr2_3:55636982-55637001 None:intergenic 30.0%
CATACAAACAAAGGACAATT+TGG + chr2_3:55637081-55637100 Msa0300270:intron 30.0%
GAAATGTGAAAAATGCAAAG+GGG + chr2_3:55637156-55637175 Msa0300270:intron 30.0%
AAATGTGAAAAATGCAAAGG+GGG + chr2_3:55637157-55637176 Msa0300270:intron 30.0%
!! ATTATTGACTTGCAGATTTG+AGG + chr2_3:55637222-55637241 Msa0300270:intron 30.0%
!! TTATTGACTTGCAGATTTGA+GGG + chr2_3:55637223-55637242 Msa0300270:intron 30.0%
CAAATTTGTATGACTTACCT+GGG - chr2_3:55637299-55637318 None:intergenic 30.0%
ACAAATTTGTATGACTTACC+TGG - chr2_3:55637300-55637319 None:intergenic 30.0%
GGTAAGTCATACAAATTTGT+AGG + chr2_3:55637300-55637319 Msa0300270:intron 30.0%
TTAGTACAAAGCTAATAGTG+TGG - chr2_3:55637707-55637726 None:intergenic 30.0%
TGCAATATTTCAGAATGTGA+AGG + chr2_3:55637741-55637760 Msa0300270:intron 30.0%
!!! TCTTTTTTCTTTTGCTTAGG+AGG - chr2_3:55637802-55637821 None:intergenic 30.0%
! CAAACATGAATACCGATTAA+AGG - chr2_3:55637848-55637867 None:intergenic 30.0%
CTTTAATCGGTATTCATGTT+TGG + chr2_3:55637846-55637865 Msa0300270:CDS 30.0%
TGTTCCTAGTTATATGTAAC+TGG + chr2_3:55637979-55637998 Msa0300270:three_prime_UTR 30.0%
TATATGTAACTGGATATCCA+TGG + chr2_3:55637989-55638008 Msa0300270:three_prime_UTR 30.0%
! TAGCTTTCTGTTTCTTTAAG+GGG - chr2_3:55635715-55635734 None:intergenic 30.0%
AAAAAGAGTCACACTAAAGT+TGG + chr2_3:55635755-55635774 Msa0300270:five_prime_UTR 30.0%
ATTTAATAAGGCAAGTCCTA+TGG - chr2_3:55635783-55635802 None:intergenic 30.0%
GTGTAGTGTTAAGAAAGAAA+GGG - chr2_3:55635854-55635873 None:intergenic 30.0%
AGTGTAGTGTTAAGAAAGAA+AGG - chr2_3:55635855-55635874 None:intergenic 30.0%
CAGTGATGAAAACAACAAAA+CGG + chr2_3:55635942-55635961 Msa0300270:five_prime_UTR 30.0%
!! CTTTGCTTTGAAAGAAAAAC+AGG + chr2_3:55635974-55635993 Msa0300270:five_prime_UTR 30.0%
! TTCATCAAATGTGTTACTGT+TGG + chr2_3:55636028-55636047 Msa0300270:CDS 30.0%
CTGAAGTTATCAAAAACTGT+AGG - chr2_3:55636217-55636236 None:intergenic 30.0%
CACAGTTAATCTTGGATTAT+GGG + chr2_3:55636261-55636280 Msa0300270:CDS 30.0%
! TGCTGGTAAGAATTTTCTTT+AGG + chr2_3:55636288-55636307 Msa0300270:intron 30.0%
! TGGTAAGAATTTTCTTTAGG+TGG + chr2_3:55636291-55636310 Msa0300270:intron 30.0%
CACAAAAACAACATTCTATC+TGG - chr2_3:55636454-55636473 None:intergenic 30.0%
ACTATTAATTACACACAGAG+AGG - chr2_3:55636520-55636539 None:intergenic 30.0%
TCATAAAAATTCAGGACAAG+AGG + chr2_3:55636569-55636588 Msa0300270:intron 30.0%
GACAAAAATAATCAAATGGG+TGG - chr2_3:55636947-55636966 None:intergenic 30.0%
CATCTAGTAATTTGAAAAGG+GGG - chr2_3:55636981-55637000 None:intergenic 30.0%
GCATCTAGTAATTTGAAAAG+GGG - chr2_3:55636982-55637001 None:intergenic 30.0%
CATACAAACAAAGGACAATT+TGG + chr2_3:55637081-55637100 Msa0300270:intron 30.0%
GAAATGTGAAAAATGCAAAG+GGG + chr2_3:55637156-55637175 Msa0300270:intron 30.0%
AAATGTGAAAAATGCAAAGG+GGG + chr2_3:55637157-55637176 Msa0300270:intron 30.0%
!! ATTATTGACTTGCAGATTTG+AGG + chr2_3:55637222-55637241 Msa0300270:intron 30.0%
!! TTATTGACTTGCAGATTTGA+GGG + chr2_3:55637223-55637242 Msa0300270:intron 30.0%
CAAATTTGTATGACTTACCT+GGG - chr2_3:55637299-55637318 None:intergenic 30.0%
ACAAATTTGTATGACTTACC+TGG - chr2_3:55637300-55637319 None:intergenic 30.0%
GGTAAGTCATACAAATTTGT+AGG + chr2_3:55637300-55637319 Msa0300270:intron 30.0%
TTAGTACAAAGCTAATAGTG+TGG - chr2_3:55637707-55637726 None:intergenic 30.0%
TGCAATATTTCAGAATGTGA+AGG + chr2_3:55637741-55637760 Msa0300270:intron 30.0%
!!! TCTTTTTTCTTTTGCTTAGG+AGG - chr2_3:55637802-55637821 None:intergenic 30.0%
! CAAACATGAATACCGATTAA+AGG - chr2_3:55637848-55637867 None:intergenic 30.0%
CTTTAATCGGTATTCATGTT+TGG + chr2_3:55637846-55637865 Msa0300270:CDS 30.0%
TGTTCCTAGTTATATGTAAC+TGG + chr2_3:55637979-55637998 Msa0300270:three_prime_UTR 30.0%
TATATGTAACTGGATATCCA+TGG + chr2_3:55637989-55638008 Msa0300270:three_prime_UTR 30.0%
! TCAGCAAAAAAGGACTTGTT+TGG - chr2_3:55635674-55635693 None:intergenic 35.0%
! TTTCTGTTTCTTTAAGGGGA+AGG - chr2_3:55635711-55635730 None:intergenic 35.0%
! GGGAAGTGAAGCATTTAATA+AGG - chr2_3:55635795-55635814 None:intergenic 35.0%
TGTTAAGAAAGAAAGGGAGA+GGG - chr2_3:55635848-55635867 None:intergenic 35.0%
!! TGCTTTGAAAGAAAAACAGG+AGG + chr2_3:55635977-55635996 Msa0300270:five_prime_UTR 35.0%
! AAATGTGTTACTGTTGGAGA+TGG + chr2_3:55636034-55636053 Msa0300270:CDS 35.0%
! TGTGTTGTTATCATACCGTA+GGG - chr2_3:55636108-55636127 None:intergenic 35.0%
! ATGTGTTGTTATCATACCGT+AGG - chr2_3:55636109-55636128 None:intergenic 35.0%
TAACTTCAGTGCAAATGTTG+TGG + chr2_3:55636228-55636247 Msa0300270:CDS 35.0%
GCACAGTTAATCTTGGATTA+TGG + chr2_3:55636260-55636279 Msa0300270:CDS 35.0%
AAGAGGATTATAACAGGCTT+AGG + chr2_3:55636586-55636605 Msa0300270:CDS 35.0%
! CACTAGCTAATTTTATGCAG+TGG + chr2_3:55636762-55636781 Msa0300270:intron 35.0%
CAAATGGGTGGTTACATTAA+GGG - chr2_3:55636935-55636954 None:intergenic 35.0%
TCAAATGGGTGGTTACATTA+AGG - chr2_3:55636936-55636955 None:intergenic 35.0%
TGAAAAGGGGGTTACATTTA+GGG - chr2_3:55636969-55636988 None:intergenic 35.0%
TTGAAAAGGGGGTTACATTT+AGG - chr2_3:55636970-55636989 None:intergenic 35.0%
AATGTGAAAAATGCAAAGGG+GGG + chr2_3:55637158-55637177 Msa0300270:intron 35.0%
CAGTATTTGATTGATCATCC+AGG + chr2_3:55637253-55637272 Msa0300270:intron 35.0%
! CACGCTATCAAGGTTTTTAT+AGG + chr2_3:55637471-55637490 Msa0300270:intron 35.0%
! TGCTGTGACATTTGATTTCA+TGG + chr2_3:55637876-55637895 Msa0300270:CDS 35.0%
AACTGAAAGAAAGTAGAGCT+TGG - chr2_3:55637926-55637945 None:intergenic 35.0%
TATCAATCGTCAATACAAGC+AGG + chr2_3:55638066-55638085 Msa0300270:three_prime_UTR 35.0%
TCAATACAAGCAGGAGAATT+TGG + chr2_3:55638075-55638094 Msa0300270:three_prime_UTR 35.0%
! TCAGCAAAAAAGGACTTGTT+TGG - chr2_3:55635674-55635693 None:intergenic 35.0%
! TTTCTGTTTCTTTAAGGGGA+AGG - chr2_3:55635711-55635730 None:intergenic 35.0%
! GGGAAGTGAAGCATTTAATA+AGG - chr2_3:55635795-55635814 None:intergenic 35.0%
TGTTAAGAAAGAAAGGGAGA+GGG - chr2_3:55635848-55635867 None:intergenic 35.0%
!! TGCTTTGAAAGAAAAACAGG+AGG + chr2_3:55635977-55635996 Msa0300270:five_prime_UTR 35.0%
! AAATGTGTTACTGTTGGAGA+TGG + chr2_3:55636034-55636053 Msa0300270:CDS 35.0%
! TGTGTTGTTATCATACCGTA+GGG - chr2_3:55636108-55636127 None:intergenic 35.0%
! ATGTGTTGTTATCATACCGT+AGG - chr2_3:55636109-55636128 None:intergenic 35.0%
TAACTTCAGTGCAAATGTTG+TGG + chr2_3:55636228-55636247 Msa0300270:CDS 35.0%
GCACAGTTAATCTTGGATTA+TGG + chr2_3:55636260-55636279 Msa0300270:CDS 35.0%
AAGAGGATTATAACAGGCTT+AGG + chr2_3:55636586-55636605 Msa0300270:CDS 35.0%
! CACTAGCTAATTTTATGCAG+TGG + chr2_3:55636762-55636781 Msa0300270:intron 35.0%
CAAATGGGTGGTTACATTAA+GGG - chr2_3:55636935-55636954 None:intergenic 35.0%
TCAAATGGGTGGTTACATTA+AGG - chr2_3:55636936-55636955 None:intergenic 35.0%
TGAAAAGGGGGTTACATTTA+GGG - chr2_3:55636969-55636988 None:intergenic 35.0%
TTGAAAAGGGGGTTACATTT+AGG - chr2_3:55636970-55636989 None:intergenic 35.0%
AATGTGAAAAATGCAAAGGG+GGG + chr2_3:55637158-55637177 Msa0300270:intron 35.0%
CAGTATTTGATTGATCATCC+AGG + chr2_3:55637253-55637272 Msa0300270:intron 35.0%
! CACGCTATCAAGGTTTTTAT+AGG + chr2_3:55637471-55637490 Msa0300270:intron 35.0%
! TGCTGTGACATTTGATTTCA+TGG + chr2_3:55637876-55637895 Msa0300270:CDS 35.0%
AACTGAAAGAAAGTAGAGCT+TGG - chr2_3:55637926-55637945 None:intergenic 35.0%
TATCAATCGTCAATACAAGC+AGG + chr2_3:55638066-55638085 Msa0300270:three_prime_UTR 35.0%
TCAATACAAGCAGGAGAATT+TGG + chr2_3:55638075-55638094 Msa0300270:three_prime_UTR 35.0%
GTTAAGAAAGAAAGGGAGAG+GGG - chr2_3:55635847-55635866 None:intergenic 40.0%
GTGTTAAGAAAGAAAGGGAG+AGG - chr2_3:55635849-55635868 None:intergenic 40.0%
CACAAGCAATACATTCCCTA+CGG + chr2_3:55636090-55636109 Msa0300270:CDS 40.0%
AGTGCAAATGTTGTGGTTGA+TGG + chr2_3:55636235-55636254 Msa0300270:CDS 40.0%
CAGGACAAGAGGATTATAAC+AGG + chr2_3:55636580-55636599 Msa0300270:intron 40.0%
ACAAGTACAATTGGCACAGT+TGG - chr2_3:55636812-55636831 None:intergenic 40.0%
AACTGTGCCAATTGTACTTG+TGG + chr2_3:55636811-55636830 Msa0300270:CDS 40.0%
ACTGTGCCAATTGTACTTGT+GGG + chr2_3:55636812-55636831 Msa0300270:CDS 40.0%
TTGGTTCCCACAAGTACAAT+TGG - chr2_3:55636821-55636840 None:intergenic 40.0%
! TGTTTAGCTCCTACCAAGTT+TGG - chr2_3:55636840-55636859 None:intergenic 40.0%
AATTGAGAGATCTCAGTCGT+TGG - chr2_3:55637436-55637455 None:intergenic 40.0%
ATTGCGTTAACACGCTATCA+AGG + chr2_3:55637461-55637480 Msa0300270:intron 40.0%
TGTGTTTGATGCTGCAATCA+AGG + chr2_3:55637765-55637784 Msa0300270:CDS 40.0%
TACAAGCAGGAGAATTTGGT+TGG + chr2_3:55638079-55638098 Msa0300270:three_prime_UTR 40.0%
GTTAAGAAAGAAAGGGAGAG+GGG - chr2_3:55635847-55635866 None:intergenic 40.0%
GTGTTAAGAAAGAAAGGGAG+AGG - chr2_3:55635849-55635868 None:intergenic 40.0%
CACAAGCAATACATTCCCTA+CGG + chr2_3:55636090-55636109 Msa0300270:CDS 40.0%
AGTGCAAATGTTGTGGTTGA+TGG + chr2_3:55636235-55636254 Msa0300270:CDS 40.0%
CAGGACAAGAGGATTATAAC+AGG + chr2_3:55636580-55636599 Msa0300270:intron 40.0%
ACAAGTACAATTGGCACAGT+TGG - chr2_3:55636812-55636831 None:intergenic 40.0%
AACTGTGCCAATTGTACTTG+TGG + chr2_3:55636811-55636830 Msa0300270:CDS 40.0%
ACTGTGCCAATTGTACTTGT+GGG + chr2_3:55636812-55636831 Msa0300270:CDS 40.0%
TTGGTTCCCACAAGTACAAT+TGG - chr2_3:55636821-55636840 None:intergenic 40.0%
! TGTTTAGCTCCTACCAAGTT+TGG - chr2_3:55636840-55636859 None:intergenic 40.0%
AATTGAGAGATCTCAGTCGT+TGG - chr2_3:55637436-55637455 None:intergenic 40.0%
ATTGCGTTAACACGCTATCA+AGG + chr2_3:55637461-55637480 Msa0300270:intron 40.0%
TGTGTTTGATGCTGCAATCA+AGG + chr2_3:55637765-55637784 Msa0300270:CDS 40.0%
!! CACACTAAAGTTGGTGCCAT+AGG + chr2_3:55635764-55635783 Msa0300270:five_prime_UTR 45.0%
GATGGCAGCACAGTTAATCT+TGG + chr2_3:55636253-55636272 Msa0300270:CDS 45.0%
CTTAGGCCTTTGAGCTATAG+AGG + chr2_3:55636603-55636622 Msa0300270:CDS 45.0%
TCTGCTCCTCTATAGCTCAA+AGG - chr2_3:55636612-55636631 None:intergenic 45.0%
AGGAGCAGATGTGTTCTTGT+TGG + chr2_3:55636623-55636642 Msa0300270:CDS 45.0%
GGAGCATAATGTCTCAGTTC+AGG - chr2_3:55636791-55636810 None:intergenic 45.0%
GTACTTGTGGGAACCAAACT+TGG + chr2_3:55636824-55636843 Msa0300270:CDS 45.0%
TTGTGGGAACCAAACTTGGT+AGG + chr2_3:55636828-55636847 Msa0300270:intron 45.0%
TGGGTGGTTACATTAAGGGA+CGG - chr2_3:55636931-55636950 None:intergenic 45.0%
TGCAAAGGGGGGTTACATTA+AGG + chr2_3:55637169-55637188 Msa0300270:intron 45.0%
GCAAAGGGGGGTTACATTAA+GGG + chr2_3:55637170-55637189 Msa0300270:intron 45.0%
CTTGCAGATTTGAGGGAGAT+AGG + chr2_3:55637230-55637249 Msa0300270:intron 45.0%
GTAGTTATAGCTGTAGCTCC+TGG - chr2_3:55637274-55637293 None:intergenic 45.0%
TACAGCTATAACTACTGCCC+AGG + chr2_3:55637279-55637298 Msa0300270:CDS 45.0%
CAGATTTCAGCCGCTAATGA+TGG + chr2_3:55637351-55637370 Msa0300270:intron 45.0%
AGTCGTCTAGCCATCATTAG+CGG - chr2_3:55637364-55637383 None:intergenic 45.0%
!! CACACTAAAGTTGGTGCCAT+AGG + chr2_3:55635764-55635783 Msa0300270:five_prime_UTR 45.0%
GATGGCAGCACAGTTAATCT+TGG + chr2_3:55636253-55636272 Msa0300270:CDS 45.0%
CTTAGGCCTTTGAGCTATAG+AGG + chr2_3:55636603-55636622 Msa0300270:CDS 45.0%
TCTGCTCCTCTATAGCTCAA+AGG - chr2_3:55636612-55636631 None:intergenic 45.0%
AGGAGCAGATGTGTTCTTGT+TGG + chr2_3:55636623-55636642 Msa0300270:CDS 45.0%
GGAGCATAATGTCTCAGTTC+AGG - chr2_3:55636791-55636810 None:intergenic 45.0%
GTACTTGTGGGAACCAAACT+TGG + chr2_3:55636824-55636843 Msa0300270:CDS 45.0%
TTGTGGGAACCAAACTTGGT+AGG + chr2_3:55636828-55636847 Msa0300270:intron 45.0%
TGGGTGGTTACATTAAGGGA+CGG - chr2_3:55636931-55636950 None:intergenic 45.0%
TGCAAAGGGGGGTTACATTA+AGG + chr2_3:55637169-55637188 Msa0300270:intron 45.0%
GCAAAGGGGGGTTACATTAA+GGG + chr2_3:55637170-55637189 Msa0300270:intron 45.0%
CTTGCAGATTTGAGGGAGAT+AGG + chr2_3:55637230-55637249 Msa0300270:intron 45.0%
GTAGTTATAGCTGTAGCTCC+TGG - chr2_3:55637274-55637293 None:intergenic 45.0%
TACAGCTATAACTACTGCCC+AGG + chr2_3:55637279-55637298 Msa0300270:CDS 45.0%
CAGATTTCAGCCGCTAATGA+TGG + chr2_3:55637351-55637370 Msa0300270:intron 45.0%
AGTCGTCTAGCCATCATTAG+CGG - chr2_3:55637364-55637383 None:intergenic 45.0%
!! ACTGTTGGAGATGGTGCTGT+TGG + chr2_3:55636043-55636062 Msa0300270:CDS 50.0%
CTTGGATTATGGGACACTGC+TGG + chr2_3:55636271-55636290 Msa0300270:CDS 50.0%
GGCTCTGCTGAGTAGTGAAA+AGG - chr2_3:55636649-55636668 None:intergenic 50.0%
AGGGGGGTTACATTAAGGGA+CGG + chr2_3:55637174-55637193 Msa0300270:intron 50.0%
GGGTTACATTAAGGGACGGA+GGG + chr2_3:55637178-55637197 Msa0300270:intron 50.0%
GAAGAGCTGAAGAGGGCAAT+TGG + chr2_3:55637536-55637555 Msa0300270:CDS 50.0%
ATGCAGCTCAAAGACTCAGC+AGG + chr2_3:55637577-55637596 Msa0300270:CDS 50.0%
!! ACTGTTGGAGATGGTGCTGT+TGG + chr2_3:55636043-55636062 Msa0300270:CDS 50.0%
CTTGGATTATGGGACACTGC+TGG + chr2_3:55636271-55636290 Msa0300270:CDS 50.0%
GGCTCTGCTGAGTAGTGAAA+AGG - chr2_3:55636649-55636668 None:intergenic 50.0%
AGGGGGGTTACATTAAGGGA+CGG + chr2_3:55637174-55637193 Msa0300270:intron 50.0%
GGGTTACATTAAGGGACGGA+GGG + chr2_3:55637178-55637197 Msa0300270:intron 50.0%
GAAGAGCTGAAGAGGGCAAT+TGG + chr2_3:55637536-55637555 Msa0300270:CDS 50.0%
ATGCAGCTCAAAGACTCAGC+AGG + chr2_3:55637577-55637596 Msa0300270:CDS 50.0%
GGGGTTACATTAAGGGACGG+AGG + chr2_3:55637177-55637196 Msa0300270:intron 55.0%
GCAGGGTGAAGAGCTGAAGA+GGG + chr2_3:55637529-55637548 Msa0300270:intron 55.0%
GGGGTTACATTAAGGGACGG+AGG + chr2_3:55637177-55637196 Msa0300270:intron 55.0%
GCAGGGTGAAGAGCTGAAGA+GGG + chr2_3:55637529-55637548 Msa0300270:intron 55.0%
GGCAGGGTGAAGAGCTGAAG+AGG + chr2_3:55637528-55637547 Msa0300270:intron 60.0%
GGCAGGGTGAAGAGCTGAAG+AGG + chr2_3:55637528-55637547 Msa0300270:intron 60.0%
Chromosome Type Strat End Strand Name
chr2_3 gene 55635660 55638101 55635660 ID=Msa0300270;Name=Msa0300270
chr2_3 mRNA 55635660 55638101 55635660 ID=Msa0300270-mRNA-1;Parent=Msa0300270;Name=Msa0300270-mRNA-1;_AED=0.13;_eAED=0.13;_QI=353|0.83|0.85|1|1|1|7|123|225
chr2_3 exon 55635660 55636111 55635660 ID=Msa0300270-mRNA-1:exon:17783;Parent=Msa0300270-mRNA-1
chr2_3 exon 55636205 55636292 55636205 ID=Msa0300270-mRNA-1:exon:17784;Parent=Msa0300270-mRNA-1
chr2_3 exon 55636583 55636692 55636583 ID=Msa0300270-mRNA-1:exon:17785;Parent=Msa0300270-mRNA-1
chr2_3 exon 55636782 55636845 55636782 ID=Msa0300270-mRNA-1:exon:17786;Parent=Msa0300270-mRNA-1
chr2_3 exon 55637275 55637300 55637275 ID=Msa0300270-mRNA-1:exon:17787;Parent=Msa0300270-mRNA-1
chr2_3 exon 55637533 55637598 55637533 ID=Msa0300270-mRNA-1:exon:17788;Parent=Msa0300270-mRNA-1
chr2_3 exon 55637754 55638101 55637754 ID=Msa0300270-mRNA-1:exon:17789;Parent=Msa0300270-mRNA-1
chr2_3 five_prime_UTR 55635660 55636012 55635660 ID=Msa0300270-mRNA-1:five_prime_utr;Parent=Msa0300270-mRNA-1
chr2_3 CDS 55636013 55636111 55636013 ID=Msa0300270-mRNA-1:cds;Parent=Msa0300270-mRNA-1
chr2_3 CDS 55636205 55636292 55636205 ID=Msa0300270-mRNA-1:cds;Parent=Msa0300270-mRNA-1
chr2_3 CDS 55636583 55636692 55636583 ID=Msa0300270-mRNA-1:cds;Parent=Msa0300270-mRNA-1
chr2_3 CDS 55636782 55636845 55636782 ID=Msa0300270-mRNA-1:cds;Parent=Msa0300270-mRNA-1
chr2_3 CDS 55637275 55637300 55637275 ID=Msa0300270-mRNA-1:cds;Parent=Msa0300270-mRNA-1
chr2_3 CDS 55637533 55637598 55637533 ID=Msa0300270-mRNA-1:cds;Parent=Msa0300270-mRNA-1
chr2_3 CDS 55637754 55637978 55637754 ID=Msa0300270-mRNA-1:cds;Parent=Msa0300270-mRNA-1
chr2_3 three_prime_UTR 55637979 55638101 55637979 ID=Msa0300270-mRNA-1:three_prime_utr;Parent=Msa0300270-mRNA-1
Gene Sequence

>Msa0300270

ATGAGTACAGCAAGATTCATCAAATGTGTTACTGTTGGAGATGGTGCTGTTGGAAAGACTTGTATGCTTATCTCTTACACAAGCAATACATTCCCTACGGATTATGTGCCTACAGTTTTTGATAACTTCAGTGCAAATGTTGTGGTTGATGGCAGCACAGTTAATCTTGGATTATGGGACACTGCTGGACAAGAGGATTATAACAGGCTTAGGCCTTTGAGCTATAGAGGAGCAGATGTGTTCTTGTTGGCCTTTTCACTACTCAGCAGAGCCAGTTATGAGAATATCTCTAAAAAGTGGATTCCTGAACTGAGACATTATGCTCCAACTGTGCCAATTGTACTTGTGGGAACCAAACTTGGAGCTACAGCTATAACTACTGCCCAGGGTGAAGAGCTGAAGAGGGCAATTGGTGCAGCAGTGTACTTAGAATGCAGCTCAAAGACTCAGCAGAATGTGAAGGCTGTGTTTGATGCTGCAATCAAGGTTGTTTTGCAGCCTCCTAAGCAAAAGAAAAAAGAAAGAAGAACAGATCATGTATTTTCCTTTAATCGGTATTCATGTTTGGTGTTTGATGCTGTGACATTTGATTTCATGGTTCAGCCTTTTGAACAAATGTATTCCAAGCTCTACTTTCTTTCAGTTTTCTTGTATTTTTTTGTTGATGGATTCAAATGA
Protein sequence

>Msa0300270

MSTARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLLSRASYENISKKWIPELRHYAPTVPIVLVGTKLGATAITTAQGEELKRAIGAAVYLECSSKTQQNVKAVFDAAIKVVLQPPKQKKKERRTDHVFSFNRYSCLVFDAVTFDFMVQPFEQMYSKLYFLSVFLYFFVDGFK*