Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0380990 | XP_013461777.1 | 95.601 | 341 | 15 | 0 | 1 | 341 | 1 | 341 | 0.0 | 657 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0380990 | sp|O22193|PUB4_ARATH | 45.181 | 332 | 169 | 4 | 13 | 336 | 497 | 823 | 3.57e-78 | 258 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0380990 | A0A072V1W3 | 95.601 | 341 | 15 | 0 | 1 | 341 | 1 | 341 | 0.0 | 657 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0380990 | Msa0381090 | 0.976017 | 5.004340e-141 | -8.615850e-47 |
| Msa0380990 | Msa0430860 | 0.926029 | 8.214662e-91 | -8.615850e-47 |
| Msa0380990 | Msa0430960 | 0.906886 | 9.180253e-81 | -8.615850e-47 |
| Msa0380990 | Msa0590640 | 0.817019 | 4.096504e-52 | -8.615850e-47 |
| Msa0380990 | Msa0597770 | 0.816185 | 6.299613e-52 | -8.615850e-47 |
| Msa0380990 | Msa0630940 | 0.810515 | 1.109336e-50 | -8.615850e-47 |
| Msa0380990 | Msa0669180 | 0.815917 | 7.228975e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0380990 | MtrunA17_Chr3g0134761 | 95.601 | 341 | 15 | 0 | 1 | 341 | 1 | 341 | 0.0 | 657 |
| Msa0380990 | MtrunA17_Chr1g0152561 | 76.737 | 331 | 70 | 4 | 5 | 334 | 16 | 340 | 3.71e-178 | 497 |
| Msa0380990 | MtrunA17_Chr2g0290151 | 49.020 | 306 | 140 | 3 | 44 | 337 | 156 | 457 | 2.62e-83 | 259 |
| Msa0380990 | MtrunA17_Chr1g0183781 | 49.477 | 287 | 140 | 2 | 51 | 337 | 440 | 721 | 5.19e-80 | 258 |
| Msa0380990 | MtrunA17_Chr3g0106931 | 51.748 | 286 | 133 | 2 | 51 | 336 | 553 | 833 | 1.96e-77 | 253 |
| Msa0380990 | MtrunA17_Chr7g0261371 | 46.809 | 282 | 145 | 2 | 51 | 332 | 514 | 790 | 1.90e-70 | 234 |
| Msa0380990 | MtrunA17_Chr4g0044411 | 45.357 | 280 | 149 | 1 | 51 | 330 | 373 | 648 | 1.58e-67 | 223 |
| Msa0380990 | MtrunA17_Chr4g0031431 | 43.262 | 282 | 156 | 1 | 51 | 332 | 353 | 630 | 2.00e-61 | 207 |
| Msa0380990 | MtrunA17_Chr7g0248251 | 40.794 | 277 | 160 | 1 | 54 | 330 | 370 | 642 | 2.52e-61 | 207 |
| Msa0380990 | MtrunA17_Chr1g0199321 | 45.714 | 280 | 148 | 1 | 51 | 330 | 345 | 620 | 1.65e-60 | 204 |
| Msa0380990 | MtrunA17_Chr7g0237931 | 41.581 | 291 | 155 | 4 | 43 | 328 | 325 | 605 | 1.28e-58 | 199 |
| Msa0380990 | MtrunA17_Chr5g0437411 | 39.655 | 290 | 162 | 6 | 54 | 334 | 408 | 693 | 7.00e-47 | 168 |
| Msa0380990 | MtrunA17_Chr5g0429231 | 35.379 | 277 | 170 | 5 | 58 | 329 | 41 | 313 | 6.12e-38 | 138 |
| Msa0380990 | MtrunA17_Chr7g0275081 | 36.170 | 282 | 168 | 7 | 53 | 326 | 171 | 448 | 8.79e-35 | 132 |
| Msa0380990 | MtrunA17_Chr2g0284461 | 37.329 | 292 | 169 | 9 | 54 | 339 | 399 | 682 | 1.31e-33 | 131 |
| Msa0380990 | MtrunA17_Chr7g0234671 | 32.616 | 279 | 183 | 4 | 55 | 330 | 175 | 451 | 2.24e-31 | 122 |
| Msa0380990 | MtrunA17_Chr5g0435041 | 33.803 | 284 | 177 | 6 | 51 | 329 | 20 | 297 | 4.96e-29 | 115 |
| Msa0380990 | MtrunA17_Chr1g0189811 | 34.375 | 288 | 183 | 5 | 51 | 334 | 157 | 442 | 8.84e-27 | 110 |
| Msa0380990 | MtrunA17_Chr3g0118001 | 26.882 | 279 | 195 | 3 | 54 | 329 | 214 | 486 | 8.75e-26 | 107 |
| Msa0380990 | MtrunA17_Chr6g0449461 | 30.479 | 292 | 184 | 8 | 52 | 333 | 3 | 285 | 2.92e-25 | 103 |
| Msa0380990 | MtrunA17_Chr3g0111451 | 34.708 | 291 | 176 | 7 | 51 | 333 | 41 | 325 | 1.77e-24 | 102 |
| Msa0380990 | MtrunA17_Chr8g0377151 | 31.985 | 272 | 178 | 6 | 72 | 338 | 449 | 718 | 6.37e-24 | 102 |
| Msa0380990 | MtrunA17_Chr4g0013091 | 30.690 | 290 | 185 | 8 | 50 | 330 | 416 | 698 | 1.11e-20 | 93.2 |
| Msa0380990 | MtrunA17_Chr4g0059201 | 29.412 | 306 | 198 | 10 | 42 | 339 | 417 | 712 | 7.16e-20 | 90.9 |
| Msa0380990 | MtrunA17_Chr6g0451581 | 25.822 | 213 | 153 | 2 | 116 | 325 | 299 | 509 | 1.17e-17 | 84.0 |
| Msa0380990 | MtrunA17_Chr1g0149941 | 27.931 | 290 | 190 | 9 | 53 | 329 | 175 | 458 | 1.74e-17 | 83.6 |
| Msa0380990 | MtrunA17_Chr3g0122721 | 28.947 | 266 | 181 | 6 | 72 | 332 | 448 | 710 | 2.33e-17 | 83.2 |
| Msa0380990 | MtrunA17_Chr3g0137061 | 27.491 | 291 | 193 | 7 | 51 | 329 | 110 | 394 | 4.72e-17 | 82.0 |
| Msa0380990 | MtrunA17_Chr3g0117851 | 27.586 | 290 | 160 | 8 | 47 | 330 | 378 | 623 | 7.25e-16 | 78.6 |
| Msa0380990 | MtrunA17_Chr4g0048811 | 30.882 | 204 | 134 | 6 | 129 | 329 | 121 | 320 | 1.85e-15 | 76.3 |
| Msa0380990 | MtrunA17_Chr1g0199031 | 39.496 | 119 | 55 | 1 | 132 | 250 | 18 | 119 | 2.40e-15 | 72.0 |
| Msa0380990 | MtrunA17_Chr8g0350681 | 28.251 | 223 | 146 | 7 | 91 | 309 | 238 | 450 | 8.49e-15 | 75.5 |
| Msa0380990 | MtrunA17_Chr2g0280671 | 29.008 | 262 | 166 | 9 | 75 | 329 | 131 | 379 | 2.67e-13 | 70.1 |
| Msa0380990 | MtrunA17_Chr7g0259851 | 25.214 | 234 | 163 | 3 | 58 | 291 | 276 | 497 | 3.56e-11 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0380990 | AT3G01400.1 | 73.824 | 340 | 78 | 7 | 5 | 341 | 21 | 352 | 1.13e-170 | 479 |
| Msa0380990 | AT5G58680.1 | 69.277 | 332 | 91 | 6 | 4 | 332 | 18 | 341 | 1.25e-158 | 448 |
| Msa0380990 | AT4G16490.1 | 50.505 | 297 | 141 | 2 | 38 | 332 | 172 | 464 | 1.10e-83 | 261 |
| Msa0380990 | AT2G23140.3 | 45.181 | 332 | 169 | 4 | 13 | 336 | 308 | 634 | 7.91e-81 | 258 |
| Msa0380990 | AT2G23140.5 | 45.181 | 332 | 169 | 4 | 13 | 336 | 308 | 634 | 7.91e-81 | 258 |
| Msa0380990 | AT2G23140.2 | 45.181 | 332 | 169 | 4 | 13 | 336 | 497 | 823 | 3.63e-79 | 258 |
| Msa0380990 | AT2G23140.4 | 45.181 | 332 | 169 | 4 | 13 | 336 | 497 | 823 | 3.63e-79 | 258 |
| Msa0380990 | AT2G23140.1 | 45.181 | 332 | 169 | 4 | 13 | 336 | 500 | 826 | 4.17e-79 | 258 |
| Msa0380990 | AT5G67340.1 | 48.252 | 286 | 142 | 3 | 51 | 335 | 423 | 703 | 9.41e-74 | 241 |
| Msa0380990 | AT5G67340.2 | 48.252 | 286 | 142 | 3 | 51 | 335 | 423 | 703 | 9.41e-74 | 241 |
| Msa0380990 | AT3G54790.2 | 48.057 | 283 | 141 | 3 | 53 | 334 | 440 | 717 | 3.77e-70 | 232 |
| Msa0380990 | AT3G54790.3 | 48.057 | 283 | 141 | 3 | 53 | 334 | 476 | 753 | 1.35e-69 | 231 |
| Msa0380990 | AT3G54790.1 | 48.057 | 283 | 141 | 3 | 53 | 334 | 476 | 753 | 1.35e-69 | 231 |
| Msa0380990 | AT1G23030.1 | 45.035 | 282 | 150 | 2 | 50 | 330 | 332 | 609 | 1.08e-68 | 226 |
| Msa0380990 | AT1G71020.2 | 45.907 | 281 | 148 | 2 | 51 | 330 | 195 | 472 | 1.21e-68 | 223 |
| Msa0380990 | AT1G71020.1 | 45.907 | 281 | 148 | 2 | 51 | 330 | 343 | 620 | 1.54e-67 | 223 |
| Msa0380990 | AT3G54850.1 | 47.518 | 282 | 142 | 3 | 50 | 330 | 346 | 622 | 1.11e-62 | 211 |
| Msa0380990 | AT3G46510.1 | 42.391 | 276 | 155 | 1 | 51 | 326 | 354 | 625 | 1.67e-61 | 208 |
| Msa0380990 | AT2G28830.1 | 40.942 | 276 | 159 | 2 | 51 | 325 | 285 | 557 | 7.54e-59 | 199 |
| Msa0380990 | AT5G42340.1 | 39.310 | 290 | 172 | 1 | 39 | 328 | 369 | 654 | 3.93e-52 | 182 |
| Msa0380990 | AT3G07360.5 | 33.681 | 288 | 181 | 8 | 49 | 330 | 34 | 317 | 2.66e-35 | 131 |
| Msa0380990 | AT3G07360.3 | 33.681 | 288 | 181 | 8 | 49 | 330 | 34 | 317 | 2.66e-35 | 131 |
| Msa0380990 | AT3G07360.9 | 33.681 | 288 | 181 | 8 | 49 | 330 | 34 | 317 | 2.66e-35 | 131 |
| Msa0380990 | AT3G07360.6 | 33.681 | 288 | 181 | 8 | 49 | 330 | 34 | 317 | 2.66e-35 | 131 |
| Msa0380990 | AT3G07360.2 | 33.681 | 288 | 181 | 8 | 49 | 330 | 34 | 317 | 2.66e-35 | 131 |
| Msa0380990 | AT3G07360.8 | 33.681 | 288 | 181 | 8 | 49 | 330 | 34 | 317 | 2.66e-35 | 131 |
| Msa0380990 | AT3G07360.10 | 33.681 | 288 | 181 | 8 | 49 | 330 | 34 | 317 | 2.66e-35 | 131 |
| Msa0380990 | AT3G07360.7 | 33.681 | 288 | 181 | 8 | 49 | 330 | 34 | 317 | 2.66e-35 | 131 |
| Msa0380990 | AT3G07360.4 | 33.681 | 288 | 181 | 8 | 49 | 330 | 34 | 317 | 2.66e-35 | 131 |
| Msa0380990 | AT3G07360.1 | 33.681 | 288 | 181 | 8 | 49 | 330 | 169 | 452 | 3.61e-34 | 130 |
| Msa0380990 | AT3G03440.1 | 31.307 | 329 | 215 | 6 | 17 | 339 | 32 | 355 | 1.97e-33 | 128 |
| Msa0380990 | AT4G12710.1 | 33.557 | 298 | 184 | 8 | 50 | 337 | 46 | 339 | 1.49e-30 | 120 |
| Msa0380990 | AT1G29340.1 | 34.568 | 324 | 196 | 9 | 24 | 340 | 381 | 695 | 3.55e-27 | 112 |
| Msa0380990 | AT1G67530.2 | 31.321 | 265 | 176 | 5 | 72 | 332 | 447 | 709 | 3.10e-23 | 101 |
| Msa0380990 | AT1G67530.1 | 31.321 | 265 | 176 | 5 | 72 | 332 | 447 | 709 | 3.10e-23 | 101 |
| Msa0380990 | AT1G67530.4 | 31.321 | 265 | 176 | 5 | 72 | 332 | 447 | 709 | 3.10e-23 | 101 |
| Msa0380990 | AT5G18320.1 | 26.351 | 296 | 175 | 7 | 60 | 330 | 171 | 448 | 2.74e-22 | 97.8 |
| Msa0380990 | AT5G62560.1 | 28.159 | 277 | 188 | 6 | 58 | 329 | 243 | 513 | 4.02e-22 | 97.8 |
| Msa0380990 | AT5G40140.1 | 27.402 | 281 | 192 | 5 | 54 | 329 | 233 | 506 | 2.67e-21 | 95.1 |
| Msa0380990 | AT1G24330.1 | 29.924 | 264 | 178 | 5 | 73 | 332 | 448 | 708 | 4.11e-21 | 95.1 |
| Msa0380990 | AT1G24330.2 | 29.924 | 264 | 178 | 5 | 73 | 332 | 448 | 708 | 4.11e-21 | 95.1 |
| Msa0380990 | AT5G01830.1 | 30.686 | 277 | 173 | 8 | 62 | 330 | 380 | 645 | 7.31e-19 | 88.2 |
| Msa0380990 | AT1G27910.1 | 28.625 | 269 | 187 | 5 | 72 | 337 | 445 | 711 | 7.32e-19 | 88.2 |
| Msa0380990 | AT4G31890.3 | 29.180 | 305 | 184 | 11 | 49 | 329 | 132 | 428 | 2.57e-18 | 86.3 |
| Msa0380990 | AT4G31890.2 | 29.180 | 305 | 184 | 11 | 49 | 329 | 132 | 428 | 2.57e-18 | 86.3 |
| Msa0380990 | AT4G31890.1 | 29.180 | 305 | 184 | 11 | 49 | 329 | 132 | 428 | 2.57e-18 | 86.3 |
| Msa0380990 | AT5G65200.1 | 25.352 | 284 | 195 | 5 | 58 | 330 | 233 | 510 | 3.58e-17 | 82.8 |
| Msa0380990 | AT2G25130.1 | 27.985 | 268 | 179 | 7 | 72 | 329 | 132 | 395 | 1.09e-16 | 81.3 |
| Msa0380990 | AT4G21350.1 | 33.645 | 214 | 132 | 5 | 76 | 287 | 121 | 326 | 3.46e-16 | 79.3 |
| Msa0380990 | AT5G14510.1 | 30.108 | 279 | 180 | 8 | 58 | 329 | 9 | 279 | 4.49e-16 | 78.6 |
| Msa0380990 | AT3G47820.1 | 29.515 | 227 | 150 | 5 | 111 | 329 | 263 | 487 | 5.59e-16 | 79.3 |
| Msa0380990 | AT1G10560.1 | 29.258 | 229 | 148 | 7 | 68 | 287 | 407 | 630 | 2.52e-13 | 71.2 |
| Msa0380990 | AT5G13060.1 | 24.088 | 274 | 170 | 4 | 54 | 293 | 272 | 541 | 4.38e-13 | 70.9 |
| Msa0380990 | AT3G20170.1 | 27.530 | 247 | 166 | 7 | 84 | 328 | 144 | 379 | 1.46e-12 | 68.9 |
| Msa0380990 | AT1G77460.2 | 29.070 | 258 | 152 | 9 | 87 | 331 | 467 | 706 | 2.39e-12 | 68.9 |
| Msa0380990 | AT1G77460.3 | 29.070 | 258 | 152 | 9 | 87 | 331 | 467 | 706 | 2.39e-12 | 68.9 |
| Msa0380990 | AT1G77460.4 | 29.070 | 258 | 152 | 9 | 87 | 331 | 467 | 706 | 2.39e-12 | 68.9 |
| Msa0380990 | AT1G77460.1 | 29.070 | 258 | 152 | 9 | 87 | 331 | 467 | 706 | 2.39e-12 | 68.9 |
| Msa0380990 | AT3G60350.1 | 31.875 | 160 | 98 | 3 | 89 | 245 | 599 | 750 | 1.71e-11 | 65.9 |
| Msa0380990 | AT3G60350.2 | 31.875 | 160 | 98 | 3 | 89 | 245 | 599 | 750 | 1.71e-11 | 65.9 |
| Msa0380990 | AT5G18330.1 | 29.947 | 187 | 117 | 4 | 47 | 221 | 142 | 326 | 2.87e-11 | 64.7 |
Find 100 sgRNAs with CRISPR-Local
Find 174 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAAGCCTTTGGTTGAATTAA+TGG | 0.174563 | 3_1:-82920495 | Msa0380990:CDS |
| TGAACGTGGAAAAGAGATTT+TGG | 0.221914 | 3_1:+82921259 | None:intergenic |
| CCGGCGACGGTGATGATAAA+AGG | 0.253012 | 3_1:+82920861 | None:intergenic |
| AAAGAGATTATCACTTCTTC+TGG | 0.285237 | 3_1:-82920770 | Msa0380990:CDS |
| AATGAGAAGGCGTTGGATTC+TGG | 0.288615 | 3_1:+82921060 | None:intergenic |
| TAACAGCGATACATAGTTAA+TGG | 0.292630 | 3_1:-82918145 | Msa0380990:three_prime_UTR |
| GGTTGAATTAATGGCGGATT+TGG | 0.298923 | 3_1:-82920486 | Msa0380990:CDS |
| TTGGTGGAGATTGTGGAGGT+TGG | 0.310557 | 3_1:-82920365 | Msa0380990:CDS |
| AAGGCGTTGGATTCTGGTTT+CGG | 0.334331 | 3_1:+82921066 | None:intergenic |
| TGGAAGATGTGGAGCAATTC+CGG | 0.336516 | 3_1:-82920636 | Msa0380990:CDS |
| GAAGAGAATAAAGGAGCAAT+TGG | 0.355932 | 3_1:-82920656 | Msa0380990:CDS |
| TGAAGGTGCTATTCCTCCTT+TGG | 0.356535 | 3_1:-82920258 | Msa0380990:CDS |
| TTGTAAACTAACCTTGTCTT+TGG | 0.375974 | 3_1:+82920205 | None:intergenic |
| CAAGTATATATGTTGATTAG+AGG | 0.381732 | 3_1:+82921210 | None:intergenic |
| TGGTGAGCACAAAGGATATC+TGG | 0.396238 | 3_1:+82918184 | None:intergenic |
| CGGTTTAATAGCGCCGGCTT+TGG | 0.400784 | 3_1:+82920892 | None:intergenic |
| ATCATCACCGTCGCCGGGGA+TGG | 0.404318 | 3_1:-82920855 | Msa0380990:CDS |
| ATGTATCGCTGTTAGATTGT+TGG | 0.419071 | 3_1:+82918154 | None:intergenic |
| GTCTTTGGCGCGAATGGTAC+CGG | 0.420372 | 3_1:+82920220 | None:intergenic |
| TTCTGGTGCGATTAAACCTA+TGG | 0.424118 | 3_1:-82920753 | Msa0380990:CDS |
| AAAATTAGAGCGGTGAAAGC+TGG | 0.424978 | 3_1:-82920524 | Msa0380990:CDS |
| TGGTGGAGATTGTGGAGGTT+GGG | 0.434537 | 3_1:-82920364 | Msa0380990:CDS |
| GGTGGAGGAAGGAGGGATTC+CGG | 0.437700 | 3_1:-82920390 | Msa0380990:CDS |
| TCGAGAAGGTTCACCAATGC+CGG | 0.444467 | 3_1:+82920617 | None:intergenic |
| TCACAGACAGAAGAGAATAA+AGG | 0.451466 | 3_1:-82920665 | Msa0380990:CDS |
| TTCGGTTGTAGTGGTGAATT+CGG | 0.452339 | 3_1:+82921084 | None:intergenic |
| GGAAGCGAGGACGGCGTTGG+TGG | 0.454845 | 3_1:-82920408 | Msa0380990:CDS |
| TCCGGTGTTGGTGGAGATTG+TGG | 0.459535 | 3_1:-82920372 | Msa0380990:CDS |
| GAGCGTGTTGGTGACGGTTG+TGG | 0.461714 | 3_1:-82920429 | Msa0380990:CDS |
| TTGGTTTCTCTTTCTCAGTC+CGG | 0.462112 | 3_1:-82920239 | Msa0380990:CDS |
| ACAGTGGCATTGCTAGATCT+TGG | 0.468286 | 3_1:+82918238 | None:intergenic |
| AGCGAGGACGGCGTTGGTGG+AGG | 0.468776 | 3_1:-82920405 | Msa0380990:CDS |
| AACCTTGTCTTTGGCGCGAA+TGG | 0.469160 | 3_1:+82920214 | None:intergenic |
| GGAAGGAGGGATTCCGGTGT+TGG | 0.479242 | 3_1:-82920384 | Msa0380990:CDS |
| GAGTTCGTCGGAATAATTAT+CGG | 0.485596 | 3_1:+82921027 | None:intergenic |
| AGCTGGGATAATGAAGCCTT+TGG | 0.485681 | 3_1:-82920507 | Msa0380990:CDS |
| GCTGCATTCTCCTTCGCAGT+TGG | 0.494828 | 3_1:+82920707 | None:intergenic |
| AGACACTAATAGAGCTTCTA+CGG | 0.497235 | 3_1:-82918264 | Msa0380990:CDS |
| GGCGGATTTGGATTCGTACA+TGG | 0.497248 | 3_1:-82920474 | Msa0380990:CDS |
| GGTTTATGTTGATATTTATG+AGG | 0.498706 | 3_1:+82918210 | None:intergenic |
| GTCTTCAAAGCTTTCACCAT+AGG | 0.500526 | 3_1:+82920737 | None:intergenic |
| TATCGTAACGAATTACGTAA+TGG | 0.507898 | 3_1:-82921173 | Msa0380990:exon |
| CGGCGACGGTGATGATAAAA+GGG | 0.510450 | 3_1:+82920862 | None:intergenic |
| ACGGCGTTGGTGGAGGAAGG+AGG | 0.512484 | 3_1:-82920398 | Msa0380990:CDS |
| ATGTGGAGCAATTCCGGCAT+TGG | 0.515544 | 3_1:-82920630 | Msa0380990:CDS |
| AAATTAGAGCGGTGAAAGCT+GGG | 0.520695 | 3_1:-82920523 | Msa0380990:CDS |
| TTGGTGAACCTTCTCGAAAA+CGG | 0.521459 | 3_1:-82920611 | Msa0380990:CDS |
| AATGAAGATCGAGAATCAAC+CGG | 0.523414 | 3_1:+82920999 | None:intergenic |
| CGAGTAATGGTCTGCCGTGA+AGG | 0.523826 | 3_1:-82920275 | Msa0380990:CDS |
| TGTGGAAGCGAGGACGGCGT+TGG | 0.525083 | 3_1:-82920411 | Msa0380990:CDS |
| GACGGTTGTGGAAGCGAGGA+CGG | 0.527350 | 3_1:-82920417 | Msa0380990:CDS |
| CGTCTCAGAATCGCCAAAGC+CGG | 0.529146 | 3_1:-82920905 | Msa0380990:CDS |
| CGGCGTTGGTGGAGGAAGGA+GGG | 0.530478 | 3_1:-82920397 | Msa0380990:CDS |
| AAGGAGGAATAGCACCTTCA+CGG | 0.530668 | 3_1:+82920261 | None:intergenic |
| GCAGTCACTGAAAGCGGAAG+AGG | 0.534106 | 3_1:+82921123 | None:intergenic |
| AAAGGAGCAATTGGAAGATG+TGG | 0.538963 | 3_1:-82920647 | Msa0380990:CDS |
| AGGACGGCGTTGGTGGAGGA+AGG | 0.544626 | 3_1:-82920401 | Msa0380990:CDS |
| AGGAGGGATTCCGGTGTTGG+TGG | 0.550459 | 3_1:-82920381 | Msa0380990:CDS |
| ATGGTGAAAGCTTTGAAGAC+AGG | 0.551125 | 3_1:-82920734 | Msa0380990:CDS |
| TGTGATGAGCGTGTTGGTGA+CGG | 0.551202 | 3_1:-82920435 | Msa0380990:CDS |
| TGCAGTTGAAGATCCATCCC+CGG | 0.553429 | 3_1:+82920842 | None:intergenic |
| TAGTATAAATTATGCTAGCT+TGG | 0.553785 | 3_1:-82918046 | Msa0380990:three_prime_UTR |
| TCCGCCATTAATTCAACCAA+AGG | 0.559491 | 3_1:+82920491 | None:intergenic |
| TGAAGATCCATCCCCGGCGA+CGG | 0.564290 | 3_1:+82920848 | None:intergenic |
| TCGAAAACGGAGGAATCCGC+GGG | 0.567283 | 3_1:-82920598 | Msa0380990:CDS |
| ACAAAGCTTCTTCGTTACAA+AGG | 0.569110 | 3_1:+82918079 | None:intergenic |
| TCCACAATCTCCACCAACAC+CGG | 0.569993 | 3_1:+82920371 | None:intergenic |
| TACCATTCGCGCCAAAGACA+AGG | 0.571154 | 3_1:-82920216 | Msa0380990:intron |
| AATCAACGGTTTAATAGCGC+CGG | 0.573314 | 3_1:+82920886 | None:intergenic |
| CTCGAAAACGGAGGAATCCG+CGG | 0.580066 | 3_1:-82920599 | Msa0380990:CDS |
| GATTCTGGTTTCGGTTGTAG+TGG | 0.584774 | 3_1:+82921075 | None:intergenic |
| GAGCACAAAGGATATCTGGT+AGG | 0.585677 | 3_1:+82918188 | None:intergenic |
| GGTTGTAGTGGTGAATTCGG+TGG | 0.586585 | 3_1:+82921087 | None:intergenic |
| GCCTTTGGTTGAATTAATGG+CGG | 0.592649 | 3_1:-82920492 | Msa0380990:CDS |
| GAATATGAGTTATCGAGTAA+TGG | 0.593225 | 3_1:-82920288 | Msa0380990:CDS |
| CGGAAGCGCATGTAATGAGA+AGG | 0.594684 | 3_1:+82921047 | None:intergenic |
| GTTAGATTGTTGGAGTACAT+TGG | 0.596753 | 3_1:+82918164 | None:intergenic |
| ACTGTCGCAGTCACTGAAAG+CGG | 0.601709 | 3_1:+82921117 | None:intergenic |
| CGCATGTAATGAGAAGGCGT+TGG | 0.608908 | 3_1:+82921053 | None:intergenic |
| GGTTGGGACGCAGAGACAGA+AGG | 0.611749 | 3_1:-82920348 | Msa0380990:CDS |
| AGCACAAAGGATATCTGGTA+GGG | 0.612741 | 3_1:+82918189 | None:intergenic |
| GTAACGAATTACGTAATGGA+AGG | 0.615430 | 3_1:-82921169 | Msa0380990:exon |
| ATTCCGACGAACTCATTCGC+CGG | 0.620409 | 3_1:-82921018 | Msa0380990:CDS |
| GACAGGCACTCCAACTGCGA+AGG | 0.621740 | 3_1:-82920717 | Msa0380990:CDS |
| GTTGATTAGAGGAAAAGTGA+TGG | 0.624006 | 3_1:+82921221 | None:intergenic |
| GACTGAGAAAGAGAAACCAA+AGG | 0.629876 | 3_1:+82920242 | None:intergenic |
| TATTTATGAGGCACGTACAG+TGG | 0.637169 | 3_1:+82918222 | None:intergenic |
| GATGATAAAAGGGAAATCAA+CGG | 0.645026 | 3_1:+82920872 | None:intergenic |
| GCAGAGACAGAAGGAAATTG+CGG | 0.654422 | 3_1:-82920339 | Msa0380990:CDS |
| CAACCGGCGAATGAGTTCGT+CGG | 0.657343 | 3_1:+82921015 | None:intergenic |
| GAGTACATTGGTGAGCACAA+AGG | 0.660268 | 3_1:+82918176 | None:intergenic |
| TGGTGACGGTTGTGGAAGCG+AGG | 0.674684 | 3_1:-82920421 | Msa0380990:CDS |
| GAGACAGAAGGAAATTGCGG+CGG | 0.675465 | 3_1:-82920336 | Msa0380990:CDS |
| GGTGTTGGTGGAGATTGTGG+AGG | 0.676028 | 3_1:-82920369 | Msa0380990:CDS |
| GAAAGAGAACAAAATTAGAG+CGG | 0.684942 | 3_1:-82920534 | Msa0380990:CDS |
| GGATTTGGATTCGTACATGG+TGG | 0.694539 | 3_1:-82920471 | Msa0380990:CDS |
| AGCGTATGTGATGAGCGTGT+TGG | 0.695671 | 3_1:-82920441 | Msa0380990:CDS |
| TGAGAAAGAGAAACCAAAGG+AGG | 0.707414 | 3_1:+82920245 | None:intergenic |
| TCTATATTATAAAGTGAACG+TGG | 0.709631 | 3_1:+82921245 | None:intergenic |
| GTGAACCTTCTCGAAAACGG+AGG | 0.712449 | 3_1:-82920608 | Msa0380990:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAATATATTTTTTTTTGACA+TGG | - | chr3_1:82920835-82920854 | Msa0380990:CDS | 10.0% |
| !!! | AATATATTTTTTTTTGACAT+GGG | - | chr3_1:82920836-82920855 | Msa0380990:CDS | 10.0% |
| !!! | AAATTTTACTTTTACTGTAT+TGG | - | chr3_1:82919278-82919297 | Msa0380990:intron | 15.0% |
| !!! | TTTCTTTTTTAAAGATTTGA+TGG | - | chr3_1:82919356-82919375 | Msa0380990:intron | 15.0% |
| !!! | TTCTTTTTTAAAGATTTGAT+GGG | - | chr3_1:82919357-82919376 | Msa0380990:intron | 15.0% |
| !! | AAAAGTAATTAAAACTCAAA+TGG | - | chr3_1:82919698-82919717 | Msa0380990:intron | 15.0% |
| !!! | TAATAATATTCTTTTTTTGG+TGG | - | chr3_1:82919808-82919827 | Msa0380990:intron | 15.0% |
| !!! | TCTAAATATTATTTTCCTAA+GGG | - | chr3_1:82920036-82920055 | Msa0380990:intron | 15.0% |
| !!! | CATTTTGAAACAAATTTTTT+TGG | + | chr3_1:82920133-82920152 | None:intergenic | 15.0% |
| !! | AAATTATCTTAATCAACTAT+TGG | + | chr3_1:82920270-82920289 | None:intergenic | 15.0% |
| !! | AATAGTTGATTAAGATAATT+TGG | - | chr3_1:82920269-82920288 | Msa0380990:CDS | 15.0% |
| !!! | TTTACATCATTTTTTTTGAA+AGG | + | chr3_1:82920582-82920601 | None:intergenic | 15.0% |
| !!! | TGATATTTTCTTTTCATCAA+TGG | - | chr3_1:82919320-82919339 | Msa0380990:intron | 20.0% |
| !!! | TCTTTTTTAAAGATTTGATG+GGG | - | chr3_1:82919358-82919377 | Msa0380990:intron | 20.0% |
| !!! | TTATAAAGTGTGTTTTATTG+AGG | - | chr3_1:82919557-82919576 | Msa0380990:intron | 20.0% |
| !! | ATATGTAACGTATACATATA+TGG | - | chr3_1:82919722-82919741 | Msa0380990:intron | 20.0% |
| !! | ATTATGTAGAATTGATGTTT+GGG | - | chr3_1:82920011-82920030 | Msa0380990:intron | 20.0% |
| !!! | GTCTAAATATTATTTTCCTA+AGG | - | chr3_1:82920035-82920054 | Msa0380990:intron | 20.0% |
| !! | GTAACATAGTATTAATTGAA+GGG | + | chr3_1:82920207-82920226 | None:intergenic | 20.0% |
| !! | TGTAACATAGTATTAATTGA+AGG | + | chr3_1:82920208-82920227 | None:intergenic | 20.0% |
| !! | TGATTATGTTAAACTTACAA+AGG | + | chr3_1:82920467-82920486 | None:intergenic | 20.0% |
| ! | TCTATATTATAAAGTGAACG+TGG | + | chr3_1:82917999-82918018 | None:intergenic | 25.0% |
| !! | CAAGTATATATGTTGATTAG+AGG | + | chr3_1:82918034-82918053 | None:intergenic | 25.0% |
| !! | TTTTTGTTGATCAATAGAAG+AGG | + | chr3_1:82918268-82918287 | None:intergenic | 25.0% |
| !!! | ACGATTTTCTGATTTGTTTT+TGG | + | chr3_1:82918319-82918338 | None:intergenic | 25.0% |
| !!! | ATTTTATACGGTGTTGAATA+AGG | + | chr3_1:82919638-82919657 | None:intergenic | 25.0% |
| ! | GACAATGCATAATATATTCA+AGG | + | chr3_1:82919855-82919874 | None:intergenic | 25.0% |
| ! | CATTATGTAGAATTGATGTT+TGG | - | chr3_1:82920010-82920029 | Msa0380990:intron | 25.0% |
| !! | TATTATTTTCCTAAGGGTTA+AGG | - | chr3_1:82920042-82920061 | Msa0380990:intron | 25.0% |
| !!! | AAACGACACTCATTTTAAAA+CGG | + | chr3_1:82920107-82920126 | None:intergenic | 25.0% |
| ! | GAAAATTGATCTACTCTAAA+TGG | - | chr3_1:82920419-82920438 | Msa0380990:CDS | 25.0% |
| ! | GTCAAAAAAATTATGCAAAG+TGG | + | chr3_1:82920614-82920633 | None:intergenic | 25.0% |
| !!! | CTTTGCATAATTTTTTTGAC+AGG | - | chr3_1:82920614-82920633 | Msa0380990:CDS | 25.0% |
| !!! | TATTTTGATTTCGTGTCTAA+TGG | - | chr3_1:82920881-82920900 | Msa0380990:CDS | 25.0% |
| ! | GGTTTATGTTGATATTTATG+AGG | + | chr3_1:82921034-82921053 | None:intergenic | 25.0% |
| !!! | TATACAAGTTGATGCTTTTA+GGG | + | chr3_1:82921138-82921157 | None:intergenic | 25.0% |
| !!! | ATATACAAGTTGATGCTTTT+AGG | + | chr3_1:82921139-82921158 | None:intergenic | 25.0% |
| ! | TAGTATAAATTATGCTAGCT+TGG | - | chr3_1:82921195-82921214 | Msa0380990:five_prime_UTR | 25.0% |
| TATCGTAACGAATTACGTAA+TGG | - | chr3_1:82918068-82918087 | Msa0380990:three_prime_UTR | 30.0% | |
| TCAACAAAAACAAGCTACAA+TGG | - | chr3_1:82918278-82918297 | Msa0380990:intron | 30.0% | |
| GATGATAAAAGGGAAATCAA+CGG | + | chr3_1:82918372-82918391 | None:intergenic | 30.0% | |
| AAAGAGATTATCACTTCTTC+TGG | - | chr3_1:82918471-82918490 | Msa0380990:intron | 30.0% | |
| GAAAGAGAACAAAATTAGAG+CGG | - | chr3_1:82918707-82918726 | Msa0380990:intron | 30.0% | |
| GAATATGAGTTATCGAGTAA+TGG | - | chr3_1:82918953-82918972 | Msa0380990:intron | 30.0% | |
| TTGTAAACTAACCTTGTCTT+TGG | + | chr3_1:82919039-82919058 | None:intergenic | 30.0% | |
| CATAATATATTCAAGGTCTG+AGG | + | chr3_1:82919848-82919867 | None:intergenic | 30.0% | |
| !! | TTTAAAACGGAGAGAGTATT+TGG | + | chr3_1:82920094-82920113 | None:intergenic | 30.0% |
| !! | TTCCTTAATTTGTGTGCAAT+TGG | - | chr3_1:82920326-82920345 | Msa0380990:CDS | 30.0% |
| AACCAATTGCACACAAATTA+AGG | + | chr3_1:82920331-82920350 | None:intergenic | 30.0% | |
| TAACAGCGATACATAGTTAA+TGG | - | chr3_1:82921096-82921115 | Msa0380990:CDS | 30.0% | |
| ! | TGAACGTGGAAAAGAGATTT+TGG | + | chr3_1:82917985-82918004 | None:intergenic | 35.0% |
| GTTGATTAGAGGAAAAGTGA+TGG | + | chr3_1:82918023-82918042 | None:intergenic | 35.0% | |
| ! | GTAACGAATTACGTAATGGA+AGG | - | chr3_1:82918072-82918091 | Msa0380990:three_prime_UTR | 35.0% |
| GAGTTCGTCGGAATAATTAT+CGG | + | chr3_1:82918217-82918236 | None:intergenic | 35.0% | |
| AATGAAGATCGAGAATCAAC+CGG | + | chr3_1:82918245-82918264 | None:intergenic | 35.0% | |
| ! | TATTTTCATCGCATAGTGAG+AGG | + | chr3_1:82918452-82918471 | None:intergenic | 35.0% |
| TCACAGACAGAAGAGAATAA+AGG | - | chr3_1:82918576-82918595 | Msa0380990:intron | 35.0% | |
| GAAGAGAATAAAGGAGCAAT+TGG | - | chr3_1:82918585-82918604 | Msa0380990:intron | 35.0% | |
| GAAGCCTTTGGTTGAATTAA+TGG | - | chr3_1:82918746-82918765 | Msa0380990:intron | 35.0% | |
| TACAACTCTTCATGTTTACG+CGG | - | chr3_1:82919054-82919073 | Msa0380990:intron | 35.0% | |
| TGCAATTTGCAATTGCAAGA+TGG | + | chr3_1:82919107-82919126 | None:intergenic | 35.0% | |
| !!! | ATTCTTTTTTTGGTGGTGTC+CGG | - | chr3_1:82919815-82919834 | Msa0380990:intron | 35.0% |
| !! | AAGCGACACTCATTTTGAAA+CGG | - | chr3_1:82920352-82920371 | Msa0380990:CDS | 35.0% |
| ! | TTGTTGATTGTTCCTCTTCA+TGG | - | chr3_1:82920942-82920961 | Msa0380990:CDS | 35.0% |
| ! | TGTTGATTGTTCCTCTTCAT+GGG | - | chr3_1:82920943-82920962 | Msa0380990:CDS | 35.0% |
| AGACACTAATAGAGCTTCTA+CGG | - | chr3_1:82920977-82920996 | Msa0380990:CDS | 35.0% | |
| GTTAGATTGTTGGAGTACAT+TGG | + | chr3_1:82921080-82921099 | None:intergenic | 35.0% | |
| ATGTATCGCTGTTAGATTGT+TGG | + | chr3_1:82921090-82921109 | None:intergenic | 35.0% | |
| ACAAAGCTTCTTCGTTACAA+AGG | + | chr3_1:82921165-82921184 | None:intergenic | 35.0% | |
| !! | CTTAGTATGCTTTGCTTTTC+TGG | - | chr3_1:82921226-82921245 | Msa0380990:five_prime_UTR | 35.0% |
| TTCGGTTGTAGTGGTGAATT+CGG | + | chr3_1:82918160-82918179 | None:intergenic | 40.0% | |
| AATCAACGGTTTAATAGCGC+CGG | + | chr3_1:82918358-82918377 | None:intergenic | 40.0% | |
| TTCTGGTGCGATTAAACCTA+TGG | - | chr3_1:82918488-82918507 | Msa0380990:intron | 40.0% | |
| GTCTTCAAAGCTTTCACCAT+AGG | + | chr3_1:82918507-82918526 | None:intergenic | 40.0% | |
| !! | ATGGTGAAAGCTTTGAAGAC+AGG | - | chr3_1:82918507-82918526 | Msa0380990:intron | 40.0% |
| AAAGGAGCAATTGGAAGATG+TGG | - | chr3_1:82918594-82918613 | Msa0380990:intron | 40.0% | |
| TTGGTGAACCTTCTCGAAAA+CGG | - | chr3_1:82918630-82918649 | Msa0380990:intron | 40.0% | |
| AAAATTAGAGCGGTGAAAGC+TGG | - | chr3_1:82918717-82918736 | Msa0380990:intron | 40.0% | |
| AAATTAGAGCGGTGAAAGCT+GGG | - | chr3_1:82918718-82918737 | Msa0380990:intron | 40.0% | |
| GCCTTTGGTTGAATTAATGG+CGG | - | chr3_1:82918749-82918768 | Msa0380990:intron | 40.0% | |
| TCCGCCATTAATTCAACCAA+AGG | + | chr3_1:82918753-82918772 | None:intergenic | 40.0% | |
| !! | GGTTGAATTAATGGCGGATT+TGG | - | chr3_1:82918755-82918774 | Msa0380990:intron | 40.0% |
| TGAGAAAGAGAAACCAAAGG+AGG | + | chr3_1:82918999-82919018 | None:intergenic | 40.0% | |
| GACTGAGAAAGAGAAACCAA+AGG | + | chr3_1:82919002-82919021 | None:intergenic | 40.0% | |
| TTGGTTTCTCTTTCTCAGTC+CGG | - | chr3_1:82919002-82919021 | Msa0380990:intron | 40.0% | |
| TGGAAGAATTACTGCTGACA+TGG | + | chr3_1:82919087-82919106 | None:intergenic | 40.0% | |
| ATTTGGATGAGCACAATGCA+TGG | + | chr3_1:82920077-82920096 | None:intergenic | 40.0% | |
| !!! | GACACTCATTTTGAAACGGA+GGG | - | chr3_1:82920356-82920375 | Msa0380990:CDS | 40.0% |
| TGATTTCGTGTCTAATGGTG+TGG | - | chr3_1:82920886-82920905 | Msa0380990:CDS | 40.0% | |
| GTTGATTGTTCCTCTTCATG+GGG | - | chr3_1:82920944-82920963 | Msa0380990:CDS | 40.0% | |
| TATTTATGAGGCACGTACAG+TGG | + | chr3_1:82921022-82921041 | None:intergenic | 40.0% | |
| AGCACAAAGGATATCTGGTA+GGG | + | chr3_1:82921055-82921074 | None:intergenic | 40.0% | |
| !!! | CAAGTTGATGCTTTTAGGGT+GGG | + | chr3_1:82921134-82921153 | None:intergenic | 40.0% |
| !!! | ACAAGTTGATGCTTTTAGGG+TGG | + | chr3_1:82921135-82921154 | None:intergenic | 40.0% |
| !! | GATTCTGGTTTCGGTTGTAG+TGG | + | chr3_1:82918169-82918188 | None:intergenic | 45.0% |
| !! | AAGGCGTTGGATTCTGGTTT+CGG | + | chr3_1:82918178-82918197 | None:intergenic | 45.0% |
| !! | AATGAGAAGGCGTTGGATTC+TGG | + | chr3_1:82918184-82918203 | None:intergenic | 45.0% |
| TGGAAGATGTGGAGCAATTC+CGG | - | chr3_1:82918605-82918624 | Msa0380990:intron | 45.0% | |
| !!! | TTGACGCATCTTTTTTCCCG+CGG | + | chr3_1:82918662-82918681 | None:intergenic | 45.0% |
| CGGGAAAAAAGATGCGTCAA+CGG | - | chr3_1:82918662-82918681 | Msa0380990:intron | 45.0% | |
| AGCTGGGATAATGAAGCCTT+TGG | - | chr3_1:82918734-82918753 | Msa0380990:intron | 45.0% | |
| GGATTTGGATTCGTACATGG+TGG | - | chr3_1:82918770-82918789 | Msa0380990:intron | 45.0% | |
| GCAGAGACAGAAGGAAATTG+CGG | - | chr3_1:82918902-82918921 | Msa0380990:intron | 45.0% | |
| AAGGAGGAATAGCACCTTCA+CGG | + | chr3_1:82918983-82919002 | None:intergenic | 45.0% | |
| !! | TGAAGGTGCTATTCCTCCTT+TGG | - | chr3_1:82918983-82919002 | Msa0380990:intron | 45.0% |
| !!! | TTTTTGGTGGTGTCCGGATT+CGG | - | chr3_1:82919821-82919840 | Msa0380990:intron | 45.0% |
| TTACCAACTGAGCTAGCTCA+CGG | - | chr3_1:82919876-82919895 | Msa0380990:intron | 45.0% | |
| AAGGACATGCCTTAACCCTT+AGG | + | chr3_1:82920054-82920073 | None:intergenic | 45.0% | |
| !!! | CGACACTCATTTTGAAACGG+AGG | - | chr3_1:82920355-82920374 | Msa0380990:CDS | 45.0% |
| ACAGTGGCATTGCTAGATCT+TGG | + | chr3_1:82921006-82921025 | None:intergenic | 45.0% | |
| GAGCACAAAGGATATCTGGT+AGG | + | chr3_1:82921056-82921075 | None:intergenic | 45.0% | |
| TGGTGAGCACAAAGGATATC+TGG | + | chr3_1:82921060-82921079 | None:intergenic | 45.0% | |
| GAGTACATTGGTGAGCACAA+AGG | + | chr3_1:82921068-82921087 | None:intergenic | 45.0% | |
| !!! | TATAAATAACATATTTTATA+CGG | + | chr3_1:82919650-82919669 | None:intergenic | 5.0% |
| !!! | TTTTAATAATATTCTTTTTT+TGG | - | chr3_1:82919805-82919824 | Msa0380990:intron | 5.0% |
| !! | ATTAAAGAAAAAATAATATT+TGG | + | chr3_1:82920237-82920256 | None:intergenic | 5.0% |
| !! | AAATAAATAAATCTAATAAA+AGG | + | chr3_1:82920520-82920539 | None:intergenic | 5.0% |
| ACTGTCGCAGTCACTGAAAG+CGG | + | chr3_1:82918127-82918146 | None:intergenic | 50.0% | |
| GGTTGTAGTGGTGAATTCGG+TGG | + | chr3_1:82918157-82918176 | None:intergenic | 50.0% | |
| ! | CGCATGTAATGAGAAGGCGT+TGG | + | chr3_1:82918191-82918210 | None:intergenic | 50.0% |
| ! | CGGAAGCGCATGTAATGAGA+AGG | + | chr3_1:82918197-82918216 | None:intergenic | 50.0% |
| ATTCCGACGAACTCATTCGC+CGG | - | chr3_1:82918223-82918242 | Msa0380990:exon | 50.0% | |
| CGGCGACGGTGATGATAAAA+GGG | + | chr3_1:82918382-82918401 | None:intergenic | 50.0% | |
| ! | CCTTTTATCATCACCGTCGC+CGG | - | chr3_1:82918380-82918399 | Msa0380990:intron | 50.0% |
| ! | CTTTTATCATCACCGTCGCC+GGG | - | chr3_1:82918381-82918400 | Msa0380990:intron | 50.0% |
| ! | TTTTATCATCACCGTCGCCG+GGG | - | chr3_1:82918382-82918401 | Msa0380990:intron | 50.0% |
| TGCAGTTGAAGATCCATCCC+CGG | + | chr3_1:82918402-82918421 | None:intergenic | 50.0% | |
| ATGTGGAGCAATTCCGGCAT+TGG | - | chr3_1:82918611-82918630 | Msa0380990:intron | 50.0% | |
| TCGAGAAGGTTCACCAATGC+CGG | + | chr3_1:82918627-82918646 | None:intergenic | 50.0% | |
| GTGAACCTTCTCGAAAACGG+AGG | - | chr3_1:82918633-82918652 | Msa0380990:intron | 50.0% | |
| !! | GGATTCCTCCGTTTTCGAGA+AGG | + | chr3_1:82918641-82918660 | None:intergenic | 50.0% |
| ! | GGCGGATTTGGATTCGTACA+TGG | - | chr3_1:82918767-82918786 | Msa0380990:intron | 50.0% |
| AGCGTATGTGATGAGCGTGT+TGG | - | chr3_1:82918800-82918819 | Msa0380990:intron | 50.0% | |
| ! | TGTGATGAGCGTGTTGGTGA+CGG | - | chr3_1:82918806-82918825 | Msa0380990:intron | 50.0% |
| TCCACAATCTCCACCAACAC+CGG | + | chr3_1:82918873-82918892 | None:intergenic | 50.0% | |
| TTGGTGGAGATTGTGGAGGT+TGG | - | chr3_1:82918876-82918895 | Msa0380990:intron | 50.0% | |
| TGGTGGAGATTGTGGAGGTT+GGG | - | chr3_1:82918877-82918896 | Msa0380990:intron | 50.0% | |
| GAGACAGAAGGAAATTGCGG+CGG | - | chr3_1:82918905-82918924 | Msa0380990:intron | 50.0% | |
| TACCATTCGCGCCAAAGACA+AGG | - | chr3_1:82919025-82919044 | Msa0380990:intron | 50.0% | |
| AACCTTGTCTTTGGCGCGAA+TGG | + | chr3_1:82919030-82919049 | None:intergenic | 50.0% | |
| ! | GTGAGCTAGCTCAGTTGGTA+AGG | + | chr3_1:82919877-82919896 | None:intergenic | 50.0% |
| GGATGAGCACAATGCATGGA+AGG | + | chr3_1:82920073-82920092 | None:intergenic | 50.0% | |
| GCAGTCACTGAAAGCGGAAG+AGG | + | chr3_1:82918121-82918140 | None:intergenic | 55.0% | |
| CAACCGGCGAATGAGTTCGT+CGG | + | chr3_1:82918229-82918248 | None:intergenic | 55.0% | |
| CGTCTCAGAATCGCCAAAGC+CGG | - | chr3_1:82918336-82918355 | Msa0380990:intron | 55.0% | |
| !! | CGGTTTAATAGCGCCGGCTT+TGG | + | chr3_1:82918352-82918371 | None:intergenic | 55.0% |
| CCGGCGACGGTGATGATAAA+AGG | + | chr3_1:82918383-82918402 | None:intergenic | 55.0% | |
| GCTGCATTCTCCTTCGCAGT+TGG | + | chr3_1:82918537-82918556 | None:intergenic | 55.0% | |
| CTCGAAAACGGAGGAATCCG+CGG | - | chr3_1:82918642-82918661 | Msa0380990:intron | 55.0% | |
| TCGAAAACGGAGGAATCCGC+GGG | - | chr3_1:82918643-82918662 | Msa0380990:intron | 55.0% | |
| !! | TCCGGTGTTGGTGGAGATTG+TGG | - | chr3_1:82918869-82918888 | Msa0380990:intron | 55.0% |
| !! | GGTGTTGGTGGAGATTGTGG+AGG | - | chr3_1:82918872-82918891 | Msa0380990:intron | 55.0% |
| CGAGTAATGGTCTGCCGTGA+AGG | - | chr3_1:82918966-82918985 | Msa0380990:intron | 55.0% | |
| GTCTTTGGCGCGAATGGTAC+CGG | + | chr3_1:82919024-82919043 | None:intergenic | 55.0% | |
| ! | CAAGGTCTGAGGTCCGAATC+CGG | + | chr3_1:82919837-82919856 | None:intergenic | 55.0% |
| TCTCCGTGAGCTAGCTCAGT+TGG | + | chr3_1:82919882-82919901 | None:intergenic | 55.0% | |
| GTTCCTCTTCATGGGGACAC+AGG | - | chr3_1:82920951-82920970 | Msa0380990:CDS | 55.0% | |
| CTACCTGTGTCCCCATGAAG+AGG | + | chr3_1:82920957-82920976 | None:intergenic | 55.0% | |
| TGAAGATCCATCCCCGGCGA+CGG | + | chr3_1:82918396-82918415 | None:intergenic | 60.0% | |
| GACAGGCACTCCAACTGCGA+AGG | - | chr3_1:82918524-82918543 | Msa0380990:intron | 60.0% | |
| !! | GAGCGTGTTGGTGACGGTTG+TGG | - | chr3_1:82918812-82918831 | Msa0380990:intron | 60.0% |
| !! | TGGTGACGGTTGTGGAAGCG+AGG | - | chr3_1:82918820-82918839 | Msa0380990:intron | 60.0% |
| GACGGTTGTGGAAGCGAGGA+CGG | - | chr3_1:82918824-82918843 | Msa0380990:intron | 60.0% | |
| GGTGGAGGAAGGAGGGATTC+CGG | - | chr3_1:82918851-82918870 | Msa0380990:intron | 60.0% | |
| GGAAGGAGGGATTCCGGTGT+TGG | - | chr3_1:82918857-82918876 | Msa0380990:intron | 60.0% | |
| ! | AGGAGGGATTCCGGTGTTGG+TGG | - | chr3_1:82918860-82918879 | Msa0380990:intron | 60.0% |
| GGTTGGGACGCAGAGACAGA+AGG | - | chr3_1:82918893-82918912 | Msa0380990:intron | 60.0% | |
| ATCATCACCGTCGCCGGGGA+TGG | - | chr3_1:82918386-82918405 | Msa0380990:intron | 65.0% | |
| TGTGGAAGCGAGGACGGCGT+TGG | - | chr3_1:82918830-82918849 | Msa0380990:intron | 65.0% | |
| !! | AGGACGGCGTTGGTGGAGGA+AGG | - | chr3_1:82918840-82918859 | Msa0380990:intron | 65.0% |
| !! | ACGGCGTTGGTGGAGGAAGG+AGG | - | chr3_1:82918843-82918862 | Msa0380990:intron | 65.0% |
| !! | CGGCGTTGGTGGAGGAAGGA+GGG | - | chr3_1:82918844-82918863 | Msa0380990:intron | 65.0% |
| ! | GGAAGCGAGGACGGCGTTGG+TGG | - | chr3_1:82918833-82918852 | Msa0380990:intron | 70.0% |
| !! | AGCGAGGACGGCGTTGGTGG+AGG | - | chr3_1:82918836-82918855 | Msa0380990:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 82917982 | 82921281 | 82917982 | ID=Msa0380990;Name=Msa0380990 |
| chr3_1 | mRNA | 82917982 | 82921281 | 82917982 | ID=Msa0380990-mRNA-1;Parent=Msa0380990;Name=Msa0380990-mRNA-1;_AED=0.02;_eAED=0.02;_QI=105|1|1|1|1|1|2|243|341 |
| chr3_1 | exon | 82917982 | 82918290 | 82917982 | ID=Msa0380990-mRNA-1:exon:21209;Parent=Msa0380990-mRNA-1 |
| chr3_1 | exon | 82920217 | 82921281 | 82920217 | ID=Msa0380990-mRNA-1:exon:21208;Parent=Msa0380990-mRNA-1 |
| chr3_1 | five_prime_UTR | 82921177 | 82921281 | 82921177 | ID=Msa0380990-mRNA-1:five_prime_utr;Parent=Msa0380990-mRNA-1 |
| chr3_1 | CDS | 82920217 | 82921176 | 82920217 | ID=Msa0380990-mRNA-1:cds;Parent=Msa0380990-mRNA-1 |
| chr3_1 | CDS | 82918225 | 82918290 | 82918225 | ID=Msa0380990-mRNA-1:cds;Parent=Msa0380990-mRNA-1 |
| chr3_1 | three_prime_UTR | 82917982 | 82918224 | 82917982 | ID=Msa0380990-mRNA-1:three_prime_utr;Parent=Msa0380990-mRNA-1 |
| Gene Sequence |
| Protein sequence |
